Query 025657
Match_columns 249
No_of_seqs 183 out of 1282
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:08:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025657.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025657hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0538 Glycolate oxidase [Ene 100.0 9.1E-83 2E-87 565.3 20.7 243 7-249 1-244 (363)
2 PLN02493 probable peroxisomal 100.0 1.2E-76 2.6E-81 548.3 24.1 244 6-249 2-245 (367)
3 PLN02535 glycolate oxidase 100.0 1.3E-73 2.9E-78 528.3 24.2 242 5-249 3-244 (364)
4 PRK11197 lldD L-lactate dehydr 100.0 1.3E-73 2.9E-78 530.6 23.6 243 6-249 2-266 (381)
5 cd04736 MDH_FMN Mandelate dehy 100.0 7.3E-73 1.6E-77 522.5 22.4 238 11-249 1-257 (361)
6 cd03332 LMO_FMN L-Lactate 2-mo 100.0 8.6E-71 1.9E-75 512.5 23.7 242 7-249 18-274 (383)
7 TIGR02708 L_lactate_ox L-lacta 100.0 1.4E-70 3.1E-75 508.2 23.3 239 4-249 10-249 (367)
8 cd04737 LOX_like_FMN L-Lactate 100.0 5.5E-69 1.2E-73 496.3 22.4 238 6-249 4-242 (351)
9 cd02922 FCB2_FMN Flavocytochro 100.0 1.1E-65 2.3E-70 474.0 23.7 232 11-249 1-234 (344)
10 PF01070 FMN_dh: FMN-dependent 100.0 2.6E-64 5.6E-69 467.0 19.8 233 17-249 1-246 (356)
11 PLN02979 glycolate oxidase 100.0 1.9E-60 4.1E-65 438.0 19.8 202 48-249 43-244 (366)
12 COG1304 idi Isopentenyl diphos 100.0 1E-49 2.3E-54 368.6 14.4 235 10-249 1-239 (360)
13 cd02809 alpha_hydroxyacid_oxid 100.0 2.4E-41 5.1E-46 307.0 21.5 193 11-249 1-193 (299)
14 cd02811 IDI-2_FMN Isopentenyl- 99.7 8.2E-17 1.8E-21 148.2 12.3 163 41-249 17-202 (326)
15 PRK05437 isopentenyl pyrophosp 99.7 5.6E-16 1.2E-20 144.1 12.9 163 44-249 28-210 (352)
16 TIGR02151 IPP_isom_2 isopenten 99.6 1.4E-14 3.1E-19 133.7 14.4 162 45-249 22-203 (333)
17 TIGR01306 GMP_reduct_2 guanosi 99.4 1.1E-12 2.3E-17 120.4 9.2 149 45-249 3-158 (321)
18 PRK05458 guanosine 5'-monophos 99.2 4.8E-11 1E-15 109.8 9.2 145 45-249 6-161 (326)
19 PRK08649 inosine 5-monophospha 98.8 6.3E-08 1.4E-12 90.8 13.2 178 45-249 17-208 (368)
20 TIGR01305 GMP_reduct_1 guanosi 98.7 1.2E-07 2.7E-12 87.2 12.1 150 45-249 9-171 (343)
21 cd00381 IMPDH IMPDH: The catal 98.5 1.8E-06 3.8E-11 79.8 12.0 147 45-249 3-156 (325)
22 TIGR01304 IMP_DH_rel_2 IMP deh 98.4 2.8E-06 6E-11 79.7 11.6 180 44-249 13-209 (369)
23 PRK06843 inosine 5-monophospha 98.1 1.9E-05 4E-10 74.9 10.1 69 45-121 11-81 (404)
24 cd04728 ThiG Thiazole synthase 97.5 0.0005 1.1E-08 61.0 8.0 100 126-249 90-197 (248)
25 cd02808 GltS_FMN Glutamate syn 97.3 0.005 1.1E-07 58.4 13.0 49 72-122 75-123 (392)
26 PRK07259 dihydroorotate dehydr 97.3 0.0058 1.3E-07 55.5 13.0 37 213-249 142-182 (301)
27 cd02940 DHPD_FMN Dihydropyrimi 97.2 0.0096 2.1E-07 54.2 13.4 90 126-249 100-193 (299)
28 TIGR01037 pyrD_sub1_fam dihydr 97.2 0.011 2.3E-07 53.7 13.5 142 64-249 1-182 (300)
29 TIGR01302 IMP_dehydrog inosine 97.1 0.0051 1.1E-07 59.3 11.5 34 216-249 252-286 (450)
30 PRK00208 thiG thiazole synthas 97.1 0.0023 5E-08 56.9 7.9 100 126-249 90-197 (250)
31 PTZ00314 inosine-5'-monophosph 97.1 0.0098 2.1E-07 58.1 12.9 109 45-161 19-135 (495)
32 cd04740 DHOD_1B_like Dihydroor 97.0 0.014 3.1E-07 52.7 12.6 84 126-249 90-179 (296)
33 cd04739 DHOD_like Dihydroorota 96.8 0.065 1.4E-06 49.5 15.5 34 216-249 151-188 (325)
34 PRK05567 inosine 5'-monophosph 96.8 0.0053 1.1E-07 59.7 8.4 107 45-159 10-124 (486)
35 cd02810 DHOD_DHPD_FMN Dihydroo 96.6 0.045 9.8E-07 49.2 12.9 85 126-249 99-189 (289)
36 PRK07565 dihydroorotate dehydr 96.5 0.048 1E-06 50.4 12.7 23 63-85 2-24 (334)
37 KOG2335 tRNA-dihydrouridine sy 96.4 0.038 8.2E-07 51.5 10.9 81 125-247 141-223 (358)
38 PRK11840 bifunctional sulfur c 96.4 0.0091 2E-07 55.1 6.6 101 125-249 163-271 (326)
39 TIGR00737 nifR3_yhdG putative 96.4 0.032 6.9E-07 51.2 10.2 88 70-164 3-100 (319)
40 PLN02274 inosine-5'-monophosph 96.3 0.0099 2.2E-07 58.2 6.9 35 215-249 275-310 (505)
41 PF00478 IMPDH: IMP dehydrogen 96.1 0.1 2.2E-06 48.9 11.9 148 45-249 4-170 (352)
42 PRK06801 hypothetical protein; 96.0 0.2 4.3E-06 45.7 13.1 37 213-249 188-226 (286)
43 PLN02495 oxidoreductase, actin 95.9 0.13 2.7E-06 48.9 12.0 23 60-82 7-29 (385)
44 PLN02826 dihydroorotate dehydr 95.8 0.4 8.6E-06 45.9 14.8 87 34-133 46-133 (409)
45 PRK05096 guanosine 5'-monophos 95.7 0.41 9E-06 44.6 14.0 148 45-249 10-172 (346)
46 cd02810 DHOD_DHPD_FMN Dihydroo 95.6 0.23 5E-06 44.6 12.3 148 74-249 98-265 (289)
47 PRK10415 tRNA-dihydrouridine s 95.6 0.5 1.1E-05 43.6 14.6 170 70-248 5-215 (321)
48 PRK05286 dihydroorotate dehydr 95.6 0.15 3.2E-06 47.5 11.1 97 126-249 212-311 (344)
49 cd04739 DHOD_like Dihydroorota 95.4 0.41 8.9E-06 44.2 13.0 143 74-249 99-259 (325)
50 cd04722 TIM_phosphate_binding 95.4 0.27 5.9E-06 40.1 10.8 158 92-249 13-192 (200)
51 COG0042 tRNA-dihydrouridine sy 95.2 0.11 2.4E-06 48.1 8.9 138 89-248 77-219 (323)
52 PRK07998 gatY putative fructos 95.0 0.36 7.8E-06 44.0 11.3 37 213-249 184-222 (283)
53 cd04738 DHOD_2_like Dihydrooro 95.0 0.63 1.4E-05 43.0 13.1 68 35-109 9-77 (327)
54 PRK08318 dihydropyrimidine deh 94.9 0.11 2.4E-06 49.4 8.2 104 125-249 168-275 (420)
55 PRK05286 dihydroorotate dehydr 94.7 1.1 2.3E-05 41.8 14.0 67 35-109 15-87 (344)
56 PF05690 ThiG: Thiazole biosyn 94.7 0.12 2.6E-06 45.9 7.1 100 126-249 90-197 (247)
57 TIGR00736 nifR3_rel_arch TIM-b 94.6 0.33 7.2E-06 42.9 9.8 35 215-249 177-213 (231)
58 PRK07565 dihydroorotate dehydr 94.6 0.89 1.9E-05 42.0 13.1 144 73-249 100-261 (334)
59 PF01207 Dus: Dihydrouridine s 94.6 0.22 4.9E-06 45.6 9.1 36 213-248 168-204 (309)
60 cd04738 DHOD_2_like Dihydrooro 94.5 0.23 5.1E-06 45.8 9.0 97 126-249 203-302 (327)
61 CHL00162 thiG thiamin biosynth 94.4 0.11 2.4E-06 46.5 6.3 100 126-249 104-211 (267)
62 cd04740 DHOD_1B_like Dihydroor 94.4 0.42 9.1E-06 43.1 10.2 147 73-249 88-253 (296)
63 cd02940 DHPD_FMN Dihydropyrimi 94.3 0.36 7.7E-06 43.9 9.7 103 126-249 169-274 (299)
64 PRK07259 dihydroorotate dehydr 94.3 0.46 1E-05 43.1 10.4 147 73-249 90-256 (301)
65 TIGR01858 tag_bisphos_ald clas 94.3 0.89 1.9E-05 41.4 12.0 149 94-249 30-223 (282)
66 PRK06806 fructose-bisphosphate 94.3 1 2.3E-05 40.9 12.5 147 95-249 65-223 (281)
67 PRK01033 imidazole glycerol ph 94.2 0.33 7.1E-06 43.3 8.9 145 95-246 65-215 (258)
68 PRK08318 dihydropyrimidine deh 94.1 0.67 1.5E-05 44.1 11.5 20 62-81 2-21 (420)
69 PRK07107 inosine 5-monophospha 94.0 0.14 3E-06 50.3 6.5 32 218-249 272-305 (502)
70 PRK12738 kbaY tagatose-bisphos 93.9 0.95 2.1E-05 41.3 11.5 149 94-249 32-225 (286)
71 PRK02506 dihydroorotate dehydr 93.8 0.9 2E-05 41.7 11.2 41 63-109 1-41 (310)
72 PRK10550 tRNA-dihydrouridine s 93.7 0.87 1.9E-05 41.9 10.9 35 214-248 180-215 (312)
73 TIGR01037 pyrD_sub1_fam dihydr 93.6 0.42 9.2E-06 43.2 8.7 99 125-249 157-256 (300)
74 PRK09195 gatY tagatose-bisphos 93.4 0.72 1.6E-05 42.0 9.8 151 92-249 30-225 (284)
75 COG2022 ThiG Uncharacterized e 93.4 0.81 1.8E-05 40.6 9.6 128 98-249 63-204 (262)
76 cd04730 NPD_like 2-Nitropropan 93.2 0.62 1.3E-05 40.3 8.9 163 74-249 2-178 (236)
77 PRK12857 fructose-1,6-bisphosp 93.2 1.7 3.7E-05 39.6 11.9 149 94-249 32-225 (284)
78 cd02801 DUS_like_FMN Dihydrour 93.1 0.79 1.7E-05 39.4 9.2 35 214-248 169-204 (231)
79 TIGR03151 enACPred_II putative 92.9 1.7 3.8E-05 39.8 11.7 34 216-249 149-183 (307)
80 PRK07315 fructose-bisphosphate 92.6 3.7 8.1E-05 37.5 13.3 37 213-249 186-225 (293)
81 PRK10550 tRNA-dihydrouridine s 92.6 1.7 3.8E-05 39.9 11.2 83 75-164 1-100 (312)
82 TIGR00167 cbbA ketose-bisphosp 92.5 3.6 7.8E-05 37.5 13.1 149 94-249 32-229 (288)
83 PRK13585 1-(5-phosphoribosyl)- 92.4 0.86 1.9E-05 39.7 8.6 36 214-249 179-215 (241)
84 TIGR00735 hisF imidazoleglycer 92.3 0.88 1.9E-05 40.3 8.6 37 213-249 184-221 (254)
85 TIGR00007 phosphoribosylformim 92.2 0.72 1.6E-05 39.9 7.8 36 214-249 175-211 (230)
86 TIGR01036 pyrD_sub2 dihydrooro 92.1 2.2 4.7E-05 39.7 11.3 97 126-249 211-310 (335)
87 cd00947 TBP_aldolase_IIB Tagat 92.0 3.7 8.1E-05 37.3 12.4 150 93-249 26-219 (276)
88 cd04741 DHOD_1A_like Dihydroor 91.8 1.5 3.2E-05 39.9 9.7 93 125-249 157-265 (294)
89 cd04734 OYE_like_3_FMN Old yel 91.8 2 4.3E-05 40.0 10.7 36 214-249 271-307 (343)
90 PRK07084 fructose-bisphosphate 91.7 1.9 4.1E-05 40.0 10.3 38 212-249 200-261 (321)
91 TIGR03151 enACPred_II putative 91.7 2.9 6.4E-05 38.3 11.6 81 67-158 6-93 (307)
92 PRK05835 fructose-bisphosphate 91.6 3.2 7E-05 38.3 11.7 62 94-159 31-104 (307)
93 PRK12737 gatY tagatose-bisphos 91.6 1.9 4E-05 39.4 10.0 149 94-249 32-225 (284)
94 PRK07709 fructose-bisphosphate 91.1 3.9 8.5E-05 37.3 11.6 38 212-249 187-226 (285)
95 PRK09196 fructose-1,6-bisphosp 91.0 3.8 8.3E-05 38.4 11.7 35 215-249 212-270 (347)
96 cd04731 HisF The cyclase subun 90.9 3.7 7.9E-05 35.9 11.0 35 214-248 179-214 (243)
97 PRK08610 fructose-bisphosphate 90.6 4.2 9E-05 37.2 11.3 38 212-249 187-226 (286)
98 cd02809 alpha_hydroxyacid_oxid 90.6 4 8.6E-05 37.1 11.3 105 95-249 133-249 (299)
99 TIGR00742 yjbN tRNA dihydrouri 90.5 2.9 6.2E-05 38.7 10.3 34 214-247 180-215 (318)
100 TIGR03572 WbuZ glycosyl amidat 90.4 3 6.4E-05 36.2 9.9 33 214-246 183-216 (232)
101 PRK13399 fructose-1,6-bisphosp 90.3 6.2 0.00013 37.0 12.4 35 215-249 212-270 (347)
102 PRK01130 N-acetylmannosamine-6 90.3 1.9 4.2E-05 37.1 8.6 36 214-249 159-195 (221)
103 cd02911 arch_FMN Archeal FMN-b 90.3 2.4 5.2E-05 37.3 9.3 34 214-249 179-213 (233)
104 PRK00748 1-(5-phosphoribosyl)- 90.2 2.1 4.6E-05 36.9 8.8 35 215-249 177-212 (233)
105 PF04131 NanE: Putative N-acet 90.0 0.6 1.3E-05 40.1 5.0 35 214-249 131-166 (192)
106 TIGR00737 nifR3_yhdG putative 90.0 2.4 5.1E-05 38.9 9.3 34 214-247 178-212 (319)
107 PRK08185 hypothetical protein; 89.8 8.1 0.00018 35.2 12.5 38 212-249 182-221 (283)
108 PRK13587 1-(5-phosphoribosyl)- 89.4 3.6 7.8E-05 36.2 9.7 139 95-249 67-214 (234)
109 TIGR01521 FruBisAldo_II_B fruc 89.0 7 0.00015 36.7 11.6 35 215-249 210-268 (347)
110 cd00331 IGPS Indole-3-glycerol 88.9 2 4.3E-05 36.9 7.6 65 137-249 29-94 (217)
111 cd04741 DHOD_1A_like Dihydroor 88.4 6.5 0.00014 35.7 10.9 38 66-109 1-38 (294)
112 TIGR00742 yjbN tRNA dihydrouri 88.1 7.5 0.00016 35.9 11.2 82 76-164 2-92 (318)
113 PRK11815 tRNA-dihydrouridine s 88.1 4.4 9.6E-05 37.5 9.7 35 213-247 189-225 (333)
114 cd04729 NanE N-acetylmannosami 87.7 12 0.00026 32.2 11.7 106 94-249 30-143 (219)
115 cd04732 HisA HisA. Phosphorib 87.7 4 8.8E-05 35.1 8.8 36 214-249 176-212 (234)
116 TIGR01859 fruc_bis_ald_ fructo 87.6 9.1 0.0002 34.7 11.3 161 72-249 38-223 (282)
117 cd00452 KDPG_aldolase KDPG and 87.5 2.1 4.5E-05 36.2 6.7 110 130-249 7-117 (190)
118 PRK00507 deoxyribose-phosphate 87.4 2.9 6.3E-05 36.6 7.7 176 2-249 13-201 (221)
119 PRK11815 tRNA-dihydrouridine s 87.4 6.8 0.00015 36.3 10.5 88 70-164 6-102 (333)
120 PRK13523 NADPH dehydrogenase N 87.3 5.7 0.00012 36.9 10.0 35 215-249 262-297 (337)
121 TIGR01182 eda Entner-Doudoroff 86.5 2.9 6.2E-05 36.3 7.1 109 129-249 10-121 (204)
122 PRK00278 trpC indole-3-glycero 85.6 2.5 5.4E-05 37.8 6.5 80 117-249 53-133 (260)
123 PRK02083 imidazole glycerol ph 85.1 6 0.00013 34.9 8.6 34 215-248 184-218 (253)
124 cd04723 HisA_HisF Phosphoribos 84.6 10 0.00023 33.1 9.8 133 93-249 67-211 (233)
125 TIGR01036 pyrD_sub2 dihydrooro 84.2 18 0.00038 33.6 11.6 39 64-109 46-84 (335)
126 PLN02826 dihydroorotate dehydr 84.1 7.6 0.00016 37.2 9.3 97 126-249 263-363 (409)
127 cd04729 NanE N-acetylmannosami 83.8 6.6 0.00014 33.8 8.1 35 215-249 164-199 (219)
128 COG0167 PyrD Dihydroorotate de 83.8 18 0.00039 33.5 11.3 92 63-164 1-107 (310)
129 cd02933 OYE_like_FMN Old yello 82.7 18 0.00039 33.6 11.0 36 214-249 271-306 (338)
130 PRK14024 phosphoribosyl isomer 81.8 8.9 0.00019 33.7 8.3 136 94-246 65-209 (241)
131 PLN02591 tryptophan synthase 81.5 26 0.00056 31.3 11.2 31 219-249 180-211 (250)
132 PRK06552 keto-hydroxyglutarate 81.2 6.5 0.00014 34.2 7.1 112 129-249 15-129 (213)
133 cd03316 MR_like Mandelate race 81.1 14 0.00031 34.0 9.7 35 215-249 227-262 (357)
134 PRK13125 trpA tryptophan synth 80.9 7.5 0.00016 34.3 7.5 33 217-249 173-207 (244)
135 cd04735 OYE_like_4_FMN Old yel 80.0 18 0.00038 33.7 10.0 34 216-249 270-306 (353)
136 PLN02274 inosine-5'-monophosph 79.7 10 0.00023 37.3 8.7 109 45-161 23-139 (505)
137 cd04742 NPD_FabD 2-Nitropropan 79.7 48 0.001 31.9 13.0 84 67-158 8-101 (418)
138 COG0167 PyrD Dihydroorotate de 79.3 24 0.00052 32.7 10.4 143 81-249 98-263 (310)
139 PRK09140 2-dehydro-3-deoxy-6-p 79.2 6.8 0.00015 33.8 6.5 108 132-249 15-124 (206)
140 cd04727 pdxS PdxS is a subunit 79.2 3 6.6E-05 38.0 4.4 36 214-249 180-218 (283)
141 COG0191 Fba Fructose/tagatose 78.8 24 0.00052 32.3 10.1 165 71-249 39-227 (286)
142 cd04732 HisA HisA. Phosphorib 78.7 4.1 9E-05 35.1 5.1 36 214-249 59-95 (234)
143 cd02801 DUS_like_FMN Dihydrour 78.6 14 0.00031 31.5 8.4 82 76-164 1-92 (231)
144 TIGR01303 IMP_DH_rel_1 IMP deh 78.6 8.1 0.00017 37.8 7.5 69 45-122 13-83 (475)
145 cd00946 FBP_aldolase_IIA Class 78.4 27 0.00059 32.8 10.7 38 212-249 219-268 (345)
146 CHL00200 trpA tryptophan synth 78.4 31 0.00068 31.0 10.8 156 69-249 48-224 (263)
147 TIGR00343 pyridoxal 5'-phospha 77.5 3.4 7.4E-05 37.7 4.2 36 214-249 183-221 (287)
148 PRK04180 pyridoxal biosynthesi 77.3 3.7 8.1E-05 37.5 4.5 36 214-249 189-227 (293)
149 PRK07807 inosine 5-monophospha 77.1 8.2 0.00018 37.8 7.1 107 45-160 14-127 (479)
150 TIGR01361 DAHP_synth_Bsub phos 76.3 25 0.00053 31.5 9.5 77 95-233 123-199 (260)
151 cd00381 IMPDH IMPDH: The catal 75.9 38 0.00083 31.2 10.9 114 93-249 95-219 (325)
152 cd00331 IGPS Indole-3-glycerol 75.7 25 0.00055 30.0 9.1 34 216-249 158-194 (217)
153 PF04028 DUF374: Domain of unk 75.0 22 0.00048 25.8 7.2 55 89-167 19-73 (74)
154 PRK08227 autoinducer 2 aldolas 74.3 19 0.00041 32.5 8.2 64 95-158 162-225 (264)
155 cd04733 OYE_like_2_FMN Old yel 74.2 44 0.00096 30.8 10.9 35 215-249 279-314 (338)
156 PF01116 F_bP_aldolase: Fructo 73.9 2.8 6.1E-05 38.2 2.8 149 94-249 31-228 (287)
157 PLN02617 imidazole glycerol ph 73.9 22 0.00048 35.4 9.2 74 128-247 423-502 (538)
158 PLN02495 oxidoreductase, actin 73.8 84 0.0018 29.9 12.8 82 72-159 110-214 (385)
159 PLN02858 fructose-bisphosphate 73.7 46 0.001 36.9 12.4 148 95-249 1129-1324(1378)
160 TIGR02814 pfaD_fam PfaD family 73.6 71 0.0015 31.1 12.4 84 67-158 13-106 (444)
161 TIGR02708 L_lactate_ox L-lacta 73.5 20 0.00044 33.9 8.5 35 215-249 268-305 (367)
162 TIGR03455 HisG_C-term ATP phos 73.3 14 0.00029 28.4 6.1 56 104-159 28-94 (100)
163 TIGR00007 phosphoribosylformim 73.0 6 0.00013 34.1 4.6 35 215-249 59-94 (230)
164 cd02803 OYE_like_FMN_family Ol 72.9 54 0.0012 29.7 11.1 36 214-249 267-303 (327)
165 cd02931 ER_like_FMN Enoate red 72.8 44 0.00096 31.5 10.7 35 215-249 292-327 (382)
166 PF08029 HisG_C: HisG, C-termi 72.2 3.9 8.5E-05 29.8 2.7 49 111-159 11-70 (75)
167 TIGR01303 IMP_DH_rel_1 IMP deh 71.1 11 0.00023 36.9 6.2 32 218-249 255-287 (475)
168 cd02930 DCR_FMN 2,4-dienoyl-Co 71.1 45 0.00097 31.0 10.2 31 219-249 267-298 (353)
169 cd04736 MDH_FMN Mandelate dehy 70.3 16 0.00035 34.5 7.0 33 217-249 278-311 (361)
170 TIGR01163 rpe ribulose-phospha 69.8 34 0.00074 28.6 8.5 30 135-164 7-37 (210)
171 TIGR00289 conserved hypothetic 69.0 36 0.00078 29.9 8.6 128 28-166 6-147 (222)
172 PRK06015 keto-hydroxyglutarate 68.9 45 0.00098 28.8 9.0 35 130-164 7-41 (201)
173 PTZ00314 inosine-5'-monophosph 68.7 38 0.00083 33.2 9.5 117 92-249 241-366 (495)
174 PRK00278 trpC indole-3-glycero 68.7 61 0.0013 28.9 10.1 34 216-249 197-233 (260)
175 PF01645 Glu_synthase: Conserv 68.3 4.1 8.8E-05 38.5 2.6 73 72-148 63-135 (368)
176 COG2185 Sbm Methylmalonyl-CoA 68.2 34 0.00073 28.1 7.6 83 77-162 15-101 (143)
177 COG2070 Dioxygenases related t 68.0 43 0.00092 31.2 9.3 116 21-158 35-153 (336)
178 PRK00043 thiE thiamine-phospha 68.0 71 0.0015 26.7 12.8 36 214-249 145-181 (212)
179 TIGR00734 hisAF_rel hisA/hisF 67.7 36 0.00077 29.6 8.3 35 215-249 171-206 (221)
180 PRK00748 1-(5-phosphoribosyl)- 66.8 10 0.00022 32.7 4.6 35 215-249 61-96 (233)
181 PRK13957 indole-3-glycerol-pho 66.6 35 0.00076 30.5 8.1 80 117-249 44-124 (247)
182 COG3010 NanE Putative N-acetyl 66.1 37 0.00081 29.8 7.8 33 216-249 169-202 (229)
183 cd00951 KDGDH 5-dehydro-4-deox 65.5 44 0.00096 30.1 8.7 84 75-160 5-102 (289)
184 TIGR00262 trpA tryptophan synt 65.4 9.6 0.00021 34.0 4.3 34 216-249 186-220 (256)
185 PRK03620 5-dehydro-4-deoxygluc 65.2 46 0.00099 30.2 8.8 85 75-161 12-110 (303)
186 PRK13585 1-(5-phosphoribosyl)- 64.8 9.8 0.00021 33.0 4.2 35 215-249 63-98 (241)
187 PRK05458 guanosine 5'-monophos 64.5 22 0.00047 33.1 6.6 32 218-249 191-223 (326)
188 PRK07114 keto-hydroxyglutarate 64.3 36 0.00078 29.9 7.6 36 129-164 17-52 (222)
189 COG0352 ThiE Thiamine monophos 64.0 99 0.0021 26.9 10.6 121 68-249 59-179 (211)
190 TIGR01769 GGGP geranylgeranylg 63.4 70 0.0015 27.7 9.2 67 136-249 131-198 (205)
191 cd03319 L-Ala-DL-Glu_epimerase 62.5 40 0.00086 30.5 7.9 36 214-249 214-250 (316)
192 PRK02506 dihydroorotate dehydr 62.3 1.2E+02 0.0026 27.7 11.0 32 218-249 229-263 (310)
193 COG0329 DapA Dihydrodipicolina 62.2 1.3E+02 0.0027 27.5 12.6 84 75-159 9-106 (299)
194 PRK08673 3-deoxy-7-phosphohept 62.0 20 0.00044 33.5 5.9 57 94-156 147-204 (335)
195 PRK13397 3-deoxy-7-phosphohept 61.9 22 0.00047 31.9 5.9 69 80-155 56-125 (250)
196 TIGR00290 MJ0570_dom MJ0570-re 61.7 75 0.0016 27.9 9.1 133 27-166 5-148 (223)
197 COG0107 HisF Imidazoleglycerol 61.6 23 0.00049 31.7 5.8 66 95-164 65-133 (256)
198 PRK12595 bifunctional 3-deoxy- 61.4 20 0.00044 33.7 5.9 61 91-156 169-229 (360)
199 PRK06806 fructose-bisphosphate 60.8 25 0.00054 31.9 6.2 70 93-168 31-111 (281)
200 PF01081 Aldolase: KDPG and KH 59.5 35 0.00077 29.3 6.6 67 132-249 13-80 (196)
201 cd08585 GDPD_like_3 Glyceropho 59.2 20 0.00042 31.4 5.1 70 95-164 120-221 (237)
202 PRK09140 2-dehydro-3-deoxy-6-p 59.1 1.2E+02 0.0025 26.1 10.9 57 95-158 74-130 (206)
203 PRK13398 3-deoxy-7-phosphohept 58.9 26 0.00057 31.5 5.9 69 81-156 69-138 (266)
204 cd04724 Tryptophan_synthase_al 58.2 11 0.00023 33.3 3.3 32 217-248 176-208 (242)
205 COG0107 HisF Imidazoleglycerol 57.6 29 0.00062 31.0 5.7 61 95-160 112-176 (256)
206 PF01180 DHO_dh: Dihydroorotat 57.1 15 0.00033 33.1 4.1 32 218-249 232-266 (295)
207 cd00958 DhnA Class I fructose- 56.9 1.1E+02 0.0024 26.3 9.4 34 216-249 167-207 (235)
208 PRK13398 3-deoxy-7-phosphohept 56.6 1.1E+02 0.0023 27.6 9.4 29 95-123 125-153 (266)
209 TIGR03884 sel_bind_Methan sele 56.2 15 0.00032 26.8 3.1 25 139-163 29-54 (74)
210 PRK05718 keto-hydroxyglutarate 55.9 89 0.0019 27.1 8.6 71 128-249 16-87 (212)
211 PF03060 NMO: Nitronate monoox 55.7 1.7E+02 0.0036 26.9 13.3 41 73-120 10-50 (330)
212 PF02581 TMP-TENI: Thiamine mo 55.4 12 0.00025 31.3 2.9 37 213-249 134-170 (180)
213 PRK02877 hypothetical protein; 54.7 18 0.0004 28.1 3.7 28 138-165 59-87 (106)
214 PRK03170 dihydrodipicolinate s 54.7 88 0.0019 28.0 8.7 85 75-160 6-104 (292)
215 TIGR00683 nanA N-acetylneurami 54.6 81 0.0018 28.4 8.5 85 75-160 5-104 (290)
216 PF01902 ATP_bind_4: ATP-bindi 54.5 32 0.00069 30.1 5.6 129 28-165 6-147 (218)
217 COG1830 FbaB DhnA-type fructos 54.4 60 0.0013 29.4 7.4 89 70-158 139-236 (265)
218 TIGR03679 arCOG00187 arCOG0018 54.1 52 0.0011 28.5 6.9 67 95-166 78-149 (218)
219 cd04737 LOX_like_FMN L-Lactate 53.6 69 0.0015 30.1 8.0 34 216-249 262-298 (351)
220 COG0135 TrpF Phosphoribosylant 53.5 1.3E+02 0.0029 26.1 9.2 35 213-249 141-175 (208)
221 smart00481 POLIIIAc DNA polyme 53.4 18 0.00038 24.9 3.1 22 140-161 16-37 (67)
222 PRK02227 hypothetical protein; 52.3 1.5E+02 0.0032 26.5 9.4 131 89-239 65-213 (238)
223 cd02811 IDI-2_FMN Isopentenyl- 52.3 1.1E+02 0.0025 28.1 9.2 32 218-249 244-277 (326)
224 COG2876 AroA 3-deoxy-D-arabino 51.8 85 0.0018 28.6 7.8 20 214-233 200-219 (286)
225 TIGR01768 GGGP-family geranylg 51.7 28 0.00061 30.7 4.8 37 213-249 163-201 (223)
226 TIGR01361 DAHP_synth_Bsub phos 51.0 45 0.00098 29.8 6.1 58 91-154 76-134 (260)
227 cd08600 GDPD_EcGlpQ_like Glyce 50.9 66 0.0014 29.6 7.3 23 142-164 266-288 (318)
228 PLN02775 Probable dihydrodipic 50.8 1.7E+02 0.0037 26.8 9.8 82 36-121 24-120 (286)
229 PRK06512 thiamine-phosphate py 50.5 33 0.00071 29.9 5.0 37 213-249 149-185 (221)
230 PRK02615 thiamine-phosphate py 50.2 93 0.002 29.2 8.3 37 213-249 279-315 (347)
231 TIGR02313 HpaI-NOT-DapA 2,4-di 50.0 1.1E+02 0.0023 27.7 8.5 85 75-160 5-103 (294)
232 TIGR03572 WbuZ glycosyl amidat 49.7 1.1E+02 0.0024 26.2 8.3 35 215-249 61-96 (232)
233 COG0800 Eda 2-keto-3-deoxy-6-p 49.6 48 0.001 29.0 5.8 104 136-249 22-126 (211)
234 TIGR03249 KdgD 5-dehydro-4-deo 49.4 1.3E+02 0.0028 27.1 8.9 84 75-160 10-107 (296)
235 cd03315 MLE_like Muconate lact 49.2 94 0.002 27.3 7.9 34 215-248 167-201 (265)
236 TIGR02151 IPP_isom_2 isopenten 49.1 1.2E+02 0.0025 28.1 8.7 32 218-249 243-276 (333)
237 TIGR00259 thylakoid_BtpA membr 48.2 1E+02 0.0022 27.7 7.9 35 213-247 184-219 (257)
238 PRK05437 isopentenyl pyrophosp 48.1 1.6E+02 0.0034 27.6 9.4 32 218-249 250-283 (352)
239 PRK13396 3-deoxy-7-phosphohept 47.6 1.2E+02 0.0025 28.7 8.5 30 94-123 198-227 (352)
240 cd00564 TMP_TenI Thiamine mono 47.5 41 0.00089 27.4 5.0 37 213-249 135-171 (196)
241 cd01994 Alpha_ANH_like_IV This 47.0 48 0.001 28.2 5.4 91 68-166 52-151 (194)
242 cd02929 TMADH_HD_FMN Trimethyl 46.9 33 0.00072 32.2 4.8 36 214-249 275-311 (370)
243 PLN02417 dihydrodipicolinate s 46.8 1.5E+02 0.0033 26.5 9.0 84 76-160 7-104 (280)
244 PRK00967 hypothetical protein; 46.0 29 0.00064 26.8 3.6 28 138-165 59-87 (105)
245 cd00950 DHDPS Dihydrodipicolin 45.9 1.6E+02 0.0035 26.0 9.0 83 76-159 6-102 (284)
246 cd08612 GDPD_GDE4 Glycerophosp 45.7 45 0.00097 30.2 5.3 25 140-164 249-273 (300)
247 PRK13396 3-deoxy-7-phosphohept 45.6 55 0.0012 30.8 5.9 59 92-155 153-211 (352)
248 PRK07695 transcriptional regul 45.1 47 0.001 28.0 5.1 36 214-249 135-170 (201)
249 KOG1436 Dihydroorotate dehydro 45.0 11 0.00024 35.2 1.2 45 35-81 57-101 (398)
250 PRK12595 bifunctional 3-deoxy- 44.9 1.4E+02 0.0031 28.1 8.6 30 94-123 215-244 (360)
251 cd04742 NPD_FabD 2-Nitropropan 44.8 3E+02 0.0065 26.6 11.2 22 228-249 219-241 (418)
252 cd02911 arch_FMN Archeal FMN-b 44.5 2.2E+02 0.0047 24.9 10.6 37 126-164 73-109 (233)
253 PF01116 F_bP_aldolase: Fructo 44.2 75 0.0016 28.9 6.5 29 136-167 155-183 (287)
254 PRK11858 aksA trans-homoaconit 44.2 1.1E+02 0.0023 28.9 7.8 65 92-156 53-133 (378)
255 PF08383 Maf_N: Maf N-terminal 44.1 16 0.00034 22.8 1.4 28 218-246 4-32 (35)
256 TIGR01859 fruc_bis_ald_ fructo 44.1 57 0.0012 29.6 5.7 70 93-168 29-111 (282)
257 cd08573 GDPD_GDE1 Glycerophosp 44.0 56 0.0012 28.9 5.6 25 140-164 216-240 (258)
258 PF00701 DHDPS: Dihydrodipicol 43.9 1.6E+02 0.0035 26.2 8.6 84 76-160 7-104 (289)
259 COG0042 tRNA-dihydrouridine sy 43.8 2.1E+02 0.0046 26.4 9.5 89 69-164 5-104 (323)
260 PRK00489 hisG ATP phosphoribos 43.3 61 0.0013 29.1 5.8 56 104-159 214-280 (287)
261 PRK04169 geranylgeranylglycery 43.2 46 0.00099 29.5 4.8 36 214-249 169-206 (232)
262 KOG2550 IMP dehydrogenase/GMP 43.1 45 0.00096 32.3 4.9 113 44-164 30-150 (503)
263 cd04795 SIS SIS domain. SIS (S 42.9 1.1E+02 0.0024 21.2 6.7 56 104-159 25-81 (87)
264 cd08601 GDPD_SaGlpQ_like Glyce 42.8 77 0.0017 27.6 6.3 70 94-163 129-229 (256)
265 cd00408 DHDPS-like Dihydrodipi 42.7 1.9E+02 0.0042 25.4 8.9 84 76-160 3-100 (281)
266 cd02932 OYE_YqiM_FMN Old yello 42.5 38 0.00082 31.2 4.4 35 215-249 277-312 (336)
267 PRK13802 bifunctional indole-3 42.3 64 0.0014 33.2 6.3 80 117-249 53-133 (695)
268 PRK02083 imidazole glycerol ph 42.1 37 0.00081 29.8 4.1 36 214-249 60-96 (253)
269 COG1954 GlpP Glycerol-3-phosph 41.9 45 0.00098 28.4 4.3 37 213-249 129-166 (181)
270 COG0393 Uncharacterized conser 41.7 33 0.00072 26.8 3.2 28 139-166 60-88 (108)
271 cd08559 GDPD_periplasmic_GlpQ_ 41.2 86 0.0019 28.3 6.4 21 142-162 246-266 (296)
272 PRK09197 fructose-bisphosphate 41.1 45 0.00098 31.4 4.6 38 212-249 224-272 (350)
273 PLN02460 indole-3-glycerol-pho 41.0 93 0.002 29.2 6.7 34 216-249 168-203 (338)
274 cd08583 PI-PLCc_GDPD_SF_unchar 40.9 36 0.00077 29.5 3.8 25 140-164 193-217 (237)
275 TIGR00735 hisF imidazoleglycer 40.8 42 0.00092 29.6 4.3 35 215-249 61-96 (254)
276 PRK05718 keto-hydroxyglutarate 40.8 1.6E+02 0.0035 25.5 7.8 17 233-249 112-128 (212)
277 TIGR00674 dapA dihydrodipicoli 40.7 2E+02 0.0044 25.6 8.8 85 75-160 3-101 (285)
278 PRK12855 hypothetical protein; 40.6 33 0.00071 26.6 3.1 27 138-164 59-86 (103)
279 TIGR00262 trpA tryptophan synt 40.6 53 0.0011 29.3 4.9 91 128-249 10-115 (256)
280 PRK14114 1-(5-phosphoribosyl)- 40.5 1.6E+02 0.0035 25.9 8.0 33 215-247 175-208 (241)
281 PRK01217 hypothetical protein; 40.5 33 0.00071 27.1 3.1 29 138-166 66-95 (114)
282 cd02812 PcrB_like PcrB_like pr 40.5 47 0.001 29.2 4.4 35 215-249 161-197 (219)
283 COG1606 ATP-utilizing enzymes 40.1 30 0.00065 31.3 3.1 26 146-171 35-61 (269)
284 COG0159 TrpA Tryptophan syntha 39.9 37 0.0008 30.7 3.7 32 217-248 194-226 (265)
285 cd08568 GDPD_TmGDE_like Glycer 39.8 72 0.0016 27.3 5.5 22 142-163 184-205 (226)
286 PRK10605 N-ethylmaleimide redu 39.4 39 0.00084 31.7 4.0 31 219-249 283-313 (362)
287 PRK03732 hypothetical protein; 39.2 43 0.00093 26.4 3.6 27 138-164 66-93 (114)
288 PF01906 YbjQ_1: Putative heav 39.1 35 0.00076 26.1 3.1 28 137-164 58-86 (105)
289 PRK07455 keto-hydroxyglutarate 38.8 1.2E+02 0.0025 25.7 6.5 121 119-249 4-125 (187)
290 PRK10076 pyruvate formate lyas 38.6 85 0.0018 27.2 5.7 91 83-173 46-148 (213)
291 cd03323 D-glucarate_dehydratas 38.4 3.3E+02 0.0071 25.8 10.1 97 126-249 184-283 (395)
292 TIGR01588 citE citrate lyase, 38.4 1.3E+02 0.0029 27.1 7.2 37 132-171 7-43 (288)
293 PRK07807 inosine 5-monophospha 37.9 99 0.0021 30.3 6.6 33 217-249 256-289 (479)
294 PRK05567 inosine 5'-monophosph 37.6 98 0.0021 30.2 6.6 32 218-249 318-353 (486)
295 PF01180 DHO_dh: Dihydroorotat 37.5 34 0.00074 30.8 3.2 39 64-109 2-40 (295)
296 PRK07178 pyruvate carboxylase 37.5 3.7E+02 0.0079 25.9 10.5 66 92-160 11-81 (472)
297 cd04743 NPD_PKS 2-Nitropropane 36.7 1.7E+02 0.0037 27.2 7.7 85 74-164 2-94 (320)
298 COG0106 HisA Phosphoribosylfor 36.6 3.1E+02 0.0068 24.5 10.7 140 93-248 64-212 (241)
299 cd03329 MR_like_4 Mandelate ra 36.3 2E+02 0.0044 26.7 8.3 34 216-249 228-263 (368)
300 PRK11081 tRNA guanosine-2'-O-m 36.2 1.5E+02 0.0032 26.1 6.9 73 86-161 26-99 (229)
301 PRK12856 hypothetical protein; 35.8 43 0.00094 25.9 3.1 27 138-164 59-86 (103)
302 cd05013 SIS_RpiR RpiR-like pro 35.7 1.9E+02 0.0041 21.7 6.9 67 96-162 31-97 (139)
303 PF00218 IGPS: Indole-3-glycer 35.6 22 0.00048 31.9 1.6 70 89-162 65-141 (254)
304 cd07015 Clp_protease_NfeD Nodu 35.4 48 0.001 27.9 3.6 28 138-165 15-42 (172)
305 PRK08999 hypothetical protein; 35.1 72 0.0016 28.7 5.0 37 213-249 265-301 (312)
306 TIGR02090 LEU1_arch isopropylm 35.1 1.5E+02 0.0032 27.7 7.2 17 139-155 141-157 (363)
307 cd07021 Clp_protease_NfeD_like 34.7 55 0.0012 27.5 3.8 28 138-165 15-42 (178)
308 COG1180 PflA Pyruvate-formate 34.6 2.8E+02 0.0061 24.6 8.6 87 87-173 95-193 (260)
309 COG2102 Predicted ATPases of P 34.6 1.4E+02 0.0031 26.3 6.5 93 66-167 51-150 (223)
310 PRK01119 hypothetical protein; 34.4 47 0.001 25.8 3.1 28 138-165 59-87 (106)
311 TIGR02534 mucon_cyclo muconate 34.1 1.9E+02 0.0041 26.8 7.7 35 214-248 224-259 (368)
312 cd04731 HisF The cyclase subun 33.9 79 0.0017 27.4 4.9 35 215-249 58-93 (243)
313 cd08555 PI-PLCc_GDPD_SF Cataly 33.5 69 0.0015 26.4 4.2 25 138-162 135-159 (179)
314 cd08580 GDPD_Rv2277c_like Glyc 33.2 57 0.0012 29.2 3.9 26 139-164 216-242 (263)
315 cd08205 RuBisCO_IV_RLP Ribulos 33.1 3.6E+02 0.0079 25.3 9.4 89 74-163 129-234 (367)
316 TIGR02494 PFLE_PFLC glycyl-rad 33.0 2.3E+02 0.005 25.1 7.9 78 82-159 132-221 (295)
317 COG0134 TrpC Indole-3-glycerol 33.0 30 0.00064 31.1 2.0 23 137-159 141-163 (254)
318 PRK13111 trpA tryptophan synth 32.4 60 0.0013 29.0 3.9 30 218-247 190-220 (258)
319 PLN02735 carbamoyl-phosphate s 32.0 3.4E+02 0.0073 29.6 10.0 59 95-162 599-659 (1102)
320 PF04309 G3P_antiterm: Glycero 31.8 15 0.00033 31.1 -0.0 37 213-249 125-162 (175)
321 cd02808 GltS_FMN Glutamate syn 31.7 4.5E+02 0.0098 24.9 11.0 67 94-165 169-249 (392)
322 cd04747 OYE_like_5_FMN Old yel 31.7 71 0.0015 30.0 4.4 34 216-249 268-320 (361)
323 cd07939 DRE_TIM_NifV Streptomy 31.4 2.2E+02 0.0048 25.0 7.4 70 92-161 47-132 (259)
324 PF02007 MtrH: Tetrahydrometha 31.3 2.8E+02 0.006 25.6 7.9 119 38-162 51-193 (296)
325 PF05036 SPOR: Sporulation rel 31.3 67 0.0014 21.8 3.3 32 126-157 3-34 (76)
326 PRK09517 multifunctional thiam 31.3 79 0.0017 32.7 5.0 37 213-249 148-187 (755)
327 cd00954 NAL N-Acetylneuraminic 31.3 3.6E+02 0.0077 24.1 8.8 83 76-159 6-103 (288)
328 cd04743 NPD_PKS 2-Nitropropane 31.2 1.6E+02 0.0035 27.3 6.6 57 95-159 73-130 (320)
329 cd04724 Tryptophan_synthase_al 31.2 94 0.002 27.3 4.9 25 136-160 11-35 (242)
330 PLN02898 HMP-P kinase/thiamin- 30.7 87 0.0019 30.5 5.0 37 213-249 429-465 (502)
331 PRK08883 ribulose-phosphate 3- 30.7 75 0.0016 27.7 4.1 35 215-249 149-188 (220)
332 PRK14017 galactonate dehydrata 30.7 3.1E+02 0.0067 25.6 8.6 36 214-249 214-250 (382)
333 PRK04147 N-acetylneuraminate l 30.6 3.7E+02 0.008 24.0 8.8 85 75-160 8-107 (293)
334 COG3147 DedD Uncharacterized p 30.6 54 0.0012 28.8 3.1 40 127-167 150-190 (226)
335 smart00052 EAL Putative diguan 30.6 81 0.0018 26.4 4.3 32 218-249 193-224 (241)
336 PF02593 dTMP_synthase: Thymid 30.5 66 0.0014 28.2 3.7 33 137-169 61-93 (217)
337 KOG1541 Predicted protein carb 30.4 61 0.0013 29.0 3.5 38 126-165 154-191 (270)
338 cd03325 D-galactonate_dehydrat 30.3 3.6E+02 0.0077 24.9 8.8 36 214-249 213-249 (352)
339 cd00953 KDG_aldolase KDG (2-ke 29.9 4E+02 0.0087 23.7 8.9 80 78-160 8-99 (279)
340 PRK06843 inosine 5-monophospha 29.7 69 0.0015 30.8 4.0 31 219-249 247-278 (404)
341 cd08604 GDPD_SHV3_repeat_2 Gly 29.5 1.7E+02 0.0038 26.5 6.5 22 143-164 241-262 (300)
342 PLN02460 indole-3-glycerol-pho 29.1 1.1E+02 0.0024 28.7 5.1 70 87-157 134-235 (338)
343 COG2089 SpsE Sialic acid synth 29.1 2.7E+02 0.0059 26.2 7.5 137 74-247 13-167 (347)
344 PF00977 His_biosynth: Histidi 29.0 55 0.0012 28.5 3.0 34 216-249 61-95 (229)
345 TIGR03470 HpnH hopanoid biosyn 28.9 3.5E+02 0.0077 24.6 8.5 78 79-157 76-167 (318)
346 PF06506 PrpR_N: Propionate ca 28.7 84 0.0018 26.0 4.0 82 69-158 48-131 (176)
347 PRK14582 pgaB outer membrane N 28.7 3.5E+02 0.0077 27.8 9.0 66 95-160 258-355 (671)
348 TIGR00284 dihydropteroate synt 28.6 1.9E+02 0.0041 28.6 6.9 62 95-158 219-285 (499)
349 PF00290 Trp_syntA: Tryptophan 28.4 90 0.002 28.1 4.3 29 218-246 188-217 (259)
350 cd08574 GDPD_GDE_2_3_6 Glycero 28.4 1.1E+02 0.0025 26.8 5.0 26 139-164 210-235 (252)
351 cd00453 FTBP_aldolase_II Fruct 28.3 1.2E+02 0.0026 28.5 5.1 38 212-249 217-265 (340)
352 COG1737 RpiR Transcriptional r 27.7 2.2E+02 0.0047 25.5 6.7 69 96-164 148-216 (281)
353 PF02811 PHP: PHP domain; Int 27.5 59 0.0013 25.8 2.8 27 140-166 17-43 (175)
354 TIGR00693 thiE thiamine-phosph 27.4 3.5E+02 0.0076 22.2 12.5 37 213-249 136-173 (196)
355 PF01188 MR_MLE: Mandelate rac 27.3 70 0.0015 22.0 2.8 20 214-233 47-66 (67)
356 cd08606 GDPD_YPL110cp_fungi Gl 27.3 1.5E+02 0.0031 26.4 5.5 21 140-160 233-253 (286)
357 cd04726 KGPDC_HPS 3-Keto-L-gul 27.2 3.6E+02 0.0077 22.2 9.9 34 216-249 146-179 (202)
358 TIGR01928 menC_lowGC/arch o-su 27.0 1.6E+02 0.0034 26.9 5.8 109 137-249 132-245 (324)
359 COG2121 Uncharacterized protei 26.9 2.5E+02 0.0054 24.6 6.6 23 89-112 77-99 (214)
360 PRK06361 hypothetical protein; 26.9 67 0.0014 27.2 3.1 26 139-164 10-35 (212)
361 cd03328 MR_like_3 Mandelate ra 26.5 4.1E+02 0.0089 24.5 8.5 36 214-249 219-257 (352)
362 PF09413 DUF2007: Domain of un 26.5 65 0.0014 22.0 2.5 49 96-147 15-64 (67)
363 cd00453 FTBP_aldolase_II Fruct 26.2 1.1E+02 0.0025 28.6 4.6 25 98-122 79-105 (340)
364 PF06414 Zeta_toxin: Zeta toxi 26.0 73 0.0016 26.7 3.2 31 134-164 101-131 (199)
365 TIGR02660 nifV_homocitr homoci 26.0 3.2E+02 0.0069 25.5 7.7 12 143-154 117-128 (365)
366 PRK09197 fructose-bisphosphate 25.9 1.3E+02 0.0028 28.4 5.0 69 90-164 31-138 (350)
367 cd03377 TPP_PFOR_PNO Thiamine 25.9 2.2E+02 0.0048 27.0 6.6 64 94-157 220-296 (365)
368 cd03332 LMO_FMN L-Lactate 2-mo 25.9 3.3E+02 0.0071 26.0 7.8 31 219-249 297-330 (383)
369 PRK04128 1-(5-phosphoribosyl)- 25.8 1.2E+02 0.0025 26.5 4.5 34 216-249 61-95 (228)
370 PF00218 IGPS: Indole-3-glycer 25.7 2.3E+02 0.0051 25.3 6.4 80 117-249 51-131 (254)
371 TIGR01182 eda Entner-Doudoroff 25.6 1.1E+02 0.0024 26.5 4.2 32 218-249 48-80 (204)
372 PF00352 TBP: Transcription fa 25.6 65 0.0014 23.5 2.5 21 227-247 56-76 (86)
373 COG0040 HisG ATP phosphoribosy 25.4 97 0.0021 28.4 4.0 65 95-159 208-283 (290)
374 cd05014 SIS_Kpsf KpsF-like pro 25.4 2.7E+02 0.0058 21.0 6.1 35 128-162 50-84 (128)
375 PF00563 EAL: EAL domain; Int 25.3 1E+02 0.0022 25.7 3.9 30 220-249 195-224 (236)
376 cd03174 DRE_TIM_metallolyase D 25.3 2.9E+02 0.0062 23.8 6.9 68 93-163 53-139 (265)
377 PLN02245 ATP phosphoribosyl tr 25.2 3E+02 0.0065 26.5 7.3 60 100-159 298-381 (403)
378 PRK04180 pyridoxal biosynthesi 25.2 85 0.0018 28.9 3.5 68 143-249 28-96 (293)
379 cd03324 rTSbeta_L-fuconate_deh 25.2 5.6E+02 0.012 24.4 9.4 124 103-249 181-316 (415)
380 PF00977 His_biosynth: Histidi 25.2 3.8E+02 0.0081 23.2 7.6 35 215-249 178-213 (229)
381 PF00834 Ribul_P_3_epim: Ribul 25.1 97 0.0021 26.6 3.8 34 216-249 149-187 (201)
382 PLN02411 12-oxophytodienoate r 25.1 98 0.0021 29.4 4.1 30 220-249 305-334 (391)
383 cd08563 GDPD_TtGDE_like Glycer 25.0 2.1E+02 0.0045 24.4 5.9 24 140-163 188-211 (230)
384 cd01948 EAL EAL domain. This d 24.8 1.2E+02 0.0026 25.3 4.3 30 220-249 194-223 (240)
385 PF11590 DNAPolymera_Pol: DNA 24.7 26 0.00057 22.5 0.1 30 18-47 4-38 (41)
386 cd00945 Aldolase_Class_I Class 24.7 3.3E+02 0.0071 21.9 6.9 74 85-160 7-86 (201)
387 PF01068 DNA_ligase_A_M: ATP d 24.6 2.2E+02 0.0047 23.5 5.8 41 128-168 152-194 (202)
388 cd08605 GDPD_GDE5_like_1_plant 24.5 87 0.0019 27.8 3.5 68 96-163 160-263 (282)
389 cd06557 KPHMT-like Ketopantoat 24.4 1.4E+02 0.003 26.7 4.8 24 136-159 152-178 (254)
390 TIGR01501 MthylAspMutase methy 24.4 2.6E+02 0.0055 22.6 5.9 67 89-156 14-84 (134)
391 COG1832 Predicted CoA-binding 24.4 52 0.0011 27.0 1.8 23 126-153 99-121 (140)
392 COG2927 HolC DNA polymerase II 24.1 1.2E+02 0.0026 25.0 3.9 25 140-164 17-41 (144)
393 PRK01130 N-acetylmannosamine-6 24.1 1.4E+02 0.003 25.5 4.6 33 217-249 45-88 (221)
394 COG2355 Zn-dependent dipeptida 24.1 1.5E+02 0.0033 27.5 5.0 56 94-152 152-215 (313)
395 PRK08255 salicylyl-CoA 5-hydro 23.8 3.8E+02 0.0081 27.7 8.4 31 219-249 678-709 (765)
396 PRK11145 pflA pyruvate formate 23.8 3.9E+02 0.0084 23.0 7.4 79 82-160 77-169 (246)
397 TIGR00113 queA S-adenosylmethi 23.7 2E+02 0.0043 27.1 5.8 111 39-161 138-257 (344)
398 TIGR01446 DnaD_dom DnaD and ph 23.6 57 0.0012 22.7 1.7 27 213-243 46-72 (73)
399 PTZ00413 lipoate synthase; Pro 23.6 5.5E+02 0.012 24.7 8.7 72 89-162 178-262 (398)
400 cd08564 GDPD_GsGDE_like Glycer 23.4 3.7E+02 0.008 23.5 7.3 22 139-160 210-231 (265)
401 cd08579 GDPD_memb_like Glycero 23.3 1.5E+02 0.0033 25.1 4.7 70 95-164 116-202 (220)
402 cd00452 KDPG_aldolase KDPG and 23.1 4.4E+02 0.0095 21.9 10.1 32 218-249 132-164 (190)
403 PRK13587 1-(5-phosphoribosyl)- 23.0 1.4E+02 0.0029 26.2 4.4 35 215-249 63-98 (234)
404 TIGR03569 NeuB_NnaB N-acetylne 23.0 95 0.0021 28.9 3.5 30 93-123 122-151 (329)
405 PRK00311 panB 3-methyl-2-oxobu 22.8 2.6E+02 0.0056 25.2 6.2 24 136-159 155-181 (264)
406 cd02072 Glm_B12_BD B12 binding 22.7 2.8E+02 0.0061 22.1 5.8 26 95-120 41-67 (128)
407 PRK05198 2-dehydro-3-deoxyphos 22.6 2.2E+02 0.0047 25.9 5.6 45 80-124 57-101 (264)
408 TIGR01306 GMP_reduct_2 guanosi 22.6 3.5E+02 0.0075 25.2 7.1 32 218-249 188-220 (321)
409 cd08571 GDPD_SHV3_plant Glycer 22.5 2.7E+02 0.0058 25.3 6.4 72 93-164 152-263 (302)
410 cd00405 PRAI Phosphoribosylant 22.5 88 0.0019 26.4 3.0 35 213-249 139-173 (203)
411 COG3084 Uncharacterized protei 22.4 51 0.0011 24.2 1.3 29 129-157 12-42 (88)
412 cd08567 GDPD_SpGDE_like Glycer 22.4 2E+02 0.0043 24.9 5.4 24 140-163 219-242 (263)
413 PRK11633 cell division protein 22.3 1.7E+02 0.0037 25.8 4.8 35 128-162 150-184 (226)
414 COG0274 DeoC Deoxyribose-phosp 22.3 1.1E+02 0.0024 27.1 3.6 36 214-249 167-205 (228)
415 PLN02424 ketopantoate hydroxym 22.2 1.8E+02 0.0039 27.2 5.1 24 136-159 176-202 (332)
416 COG1902 NemA NADH:flavin oxido 22.2 1.3E+02 0.0027 28.5 4.2 31 219-249 279-310 (363)
417 cd08210 RLP_RrRLP Ribulose bis 22.2 6.2E+02 0.013 23.8 8.9 115 47-163 95-229 (364)
418 TIGR02493 PFLA pyruvate format 22.1 4.9E+02 0.011 22.0 8.1 76 82-157 72-161 (235)
419 COG1879 RbsB ABC-type sugar tr 22.1 3.9E+02 0.0084 23.7 7.3 68 93-165 52-127 (322)
420 cd07896 Adenylation_kDNA_ligas 22.1 2.8E+02 0.006 22.6 5.9 39 130-168 126-165 (174)
421 COG1030 NfeD Membrane-bound se 21.9 1.1E+02 0.0025 29.6 3.9 26 139-164 43-68 (436)
422 cd08570 GDPD_YPL206cp_fungi Gl 21.5 2.5E+02 0.0054 24.0 5.7 25 140-164 192-216 (234)
423 PRK02714 O-succinylbenzoate sy 21.2 6.3E+02 0.014 23.0 8.9 125 104-249 109-239 (320)
424 cd01097 Tetrahydromethanopteri 21.2 52 0.0011 27.4 1.3 29 137-165 13-41 (202)
425 PF05226 CHASE2: CHASE2 domain 21.2 1.2E+02 0.0027 27.0 3.9 32 134-165 59-90 (310)
426 PRK09454 ugpQ cytoplasmic glyc 21.1 1.1E+02 0.0024 26.7 3.4 26 139-164 196-221 (249)
427 PRK13957 indole-3-glycerol-pho 21.1 6E+02 0.013 22.7 8.7 62 95-162 65-134 (247)
428 TIGR01362 KDO8P_synth 3-deoxy- 21.1 2.3E+02 0.0051 25.5 5.5 44 80-123 49-92 (258)
429 cd05710 SIS_1 A subgroup of th 20.9 1.7E+02 0.0037 22.4 4.1 37 126-162 48-84 (120)
430 COG4943 Predicted signal trans 20.9 4.6E+02 0.0099 26.1 7.7 126 105-249 358-492 (524)
431 cd05008 SIS_GlmS_GlmD_1 SIS (S 20.8 1.5E+02 0.0033 22.3 3.8 34 128-161 49-82 (126)
432 COG0191 Fba Fructose/tagatose 20.7 1.9E+02 0.0042 26.5 4.9 63 93-159 31-105 (286)
433 KOG2794 Delta-aminolevulinic a 20.6 1.6E+02 0.0035 27.0 4.3 48 116-164 216-266 (340)
434 TIGR02130 dapB_plant dihydrodi 20.4 6.5E+02 0.014 22.8 8.4 31 85-115 74-104 (275)
435 TIGR01520 FruBisAldo_II_A fruc 20.1 2.2E+02 0.0047 27.0 5.3 75 81-159 28-142 (357)
436 cd08609 GDPD_GDE3 Glycerophosp 20.1 1.3E+02 0.0029 27.7 3.8 27 138-164 231-257 (315)
437 PRK15408 autoinducer 2-binding 20.1 5.9E+02 0.013 23.2 8.2 68 91-161 40-114 (336)
438 PF01070 FMN_dh: FMN-dependent 20.0 5E+02 0.011 24.3 7.7 83 117-249 217-302 (356)
No 1
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=100.00 E-value=9.1e-83 Score=565.27 Aligned_cols=243 Identities=70% Similarity=1.080 Sum_probs=234.0
Q ss_pred CCChHHHHHHHHHhCChhhhhhhccCccchHHHHHHHHhhcccceeccccCCCCCCccceeecCcccccceeeccccccc
Q 025657 7 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQK 86 (249)
Q Consensus 7 ~~~i~d~e~~A~~~Lp~~~~~Y~~gGa~de~t~~~N~~af~~~~l~pr~l~~v~~~d~st~llG~~~~~Pi~iaP~g~~~ 86 (249)
++|++|||+.|+++||+++||||.|||+|++|+++|++||.||.|+||+|+||+.+|+||++||+++++||+|||||+++
T Consensus 1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk 80 (363)
T KOG0538|consen 1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK 80 (363)
T ss_pred CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCC-CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 025657 87 MAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRL 165 (249)
Q Consensus 87 l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~ 165 (249)
|+|||||.++||||+++|++|++||.|++|+|||++++| +.+|||||+++||+++++|++|||++||+||+||||+|++
T Consensus 81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l 160 (363)
T KOG0538|consen 81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL 160 (363)
T ss_pred ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence 999999999999999999999999999999999998885 8999999999999999999999999999999999999999
Q ss_pred CCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHH
Q 025657 166 GRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKL 245 (249)
Q Consensus 166 g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A 245 (249)
|+|+.|+||+|.+|+.++++|+.+....+..+.+.++...+...++|++++|+||+|||+.|+|||||||||+.|||++|
T Consensus 161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~A 240 (363)
T KOG0538|consen 161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKA 240 (363)
T ss_pred cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHH
Confidence 99999999999999999999998875555555567788889999999999999999999999999999999999999999
Q ss_pred hhCC
Q 025657 246 LSKE 249 (249)
Q Consensus 246 ~~~~ 249 (249)
++||
T Consensus 241 ve~G 244 (363)
T KOG0538|consen 241 VEAG 244 (363)
T ss_pred HHhC
Confidence 9997
No 2
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=100.00 E-value=1.2e-76 Score=548.33 Aligned_cols=244 Identities=84% Similarity=1.236 Sum_probs=224.5
Q ss_pred cCCChHHHHHHHHHhCChhhhhhhccCccchHHHHHHHHhhcccceeccccCCCCCCccceeecCcccccceeecccccc
Q 025657 6 EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQ 85 (249)
Q Consensus 6 ~~~~i~d~e~~A~~~Lp~~~~~Y~~gGa~de~t~~~N~~af~~~~l~pr~l~~v~~~d~st~llG~~~~~Pi~iaP~g~~ 85 (249)
.++|++|||+.||++||+.+|+||+|||+||+|+++|++||++|+|+||+|+||+++||+|+|||+++++||+|||+|++
T Consensus 2 ~~~~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~ 81 (367)
T PLN02493 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQ 81 (367)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 025657 86 KMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRL 165 (249)
Q Consensus 86 ~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~ 165 (249)
+|+||+||+++||||+++|++|++||.||+|+|||+++.+++.|||||+++|++++++||+||+++||+|||||||+|+.
T Consensus 82 ~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~ 161 (367)
T PLN02493 82 KMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRL 161 (367)
T ss_pred hhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Confidence 99999999999999999999999999999999999987677899999999999999999999999999999999999999
Q ss_pred CCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHH
Q 025657 166 GRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKL 245 (249)
Q Consensus 166 g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A 245 (249)
|+||+|+||+|.+|++++++++.....++.......+...+....+++++||+||+|||+.|++|||||||+++|||++|
T Consensus 162 G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a 241 (367)
T PLN02493 162 GRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241 (367)
T ss_pred CcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHH
Confidence 99999999999999887776653321111111223345556777889999999999999999999999999999999999
Q ss_pred hhCC
Q 025657 246 LSKE 249 (249)
Q Consensus 246 ~~~~ 249 (249)
+++|
T Consensus 242 ~~~G 245 (367)
T PLN02493 242 IQAG 245 (367)
T ss_pred HHcC
Confidence 9997
No 3
>PLN02535 glycolate oxidase
Probab=100.00 E-value=1.3e-73 Score=528.28 Aligned_cols=242 Identities=60% Similarity=0.943 Sum_probs=220.5
Q ss_pred ccCCChHHHHHHHHHhCChhhhhhhccCccchHHHHHHHHhhcccceeccccCCCCCCccceeecCcccccceeeccccc
Q 025657 5 SEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAF 84 (249)
Q Consensus 5 ~~~~~i~d~e~~A~~~Lp~~~~~Y~~gGa~de~t~~~N~~af~~~~l~pr~l~~v~~~d~st~llG~~~~~Pi~iaP~g~ 84 (249)
++++|++|||+.||++||+.+|+||+||++||+|+++|++||++|+|+||+|+||+++||+|+|||+++++||+|||+|+
T Consensus 3 ~~~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~ 82 (364)
T PLN02535 3 DEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAM 82 (364)
T ss_pred cccCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 85 QKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 85 ~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
++|+||+||+++||||+++|+||++||.|++|+|||+++.+++.|||||+++|+++++++|+||+++||+|||||||+|+
T Consensus 83 ~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~ 162 (364)
T PLN02535 83 HKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPR 162 (364)
T ss_pred hcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCC
Confidence 99999999999999999999999999999999999998767889999999999999999999999999999999999999
Q ss_pred CCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHHH
Q 025657 165 LGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSK 244 (249)
Q Consensus 165 ~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~ 244 (249)
.|+||+|+||+|.+|. ++++......+.......+...+....+++++||++|+|||+.|++||+||||+++|||++
T Consensus 163 ~g~R~~d~r~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~ 239 (364)
T PLN02535 163 LGRREADIKNKMISPQ---LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIK 239 (364)
T ss_pred CCCchhhhhcCCCCcc---hhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHH
Confidence 9999999999999883 3333221000111122334555777788999999999999999999999999999999999
Q ss_pred HhhCC
Q 025657 245 LLSKE 249 (249)
Q Consensus 245 A~~~~ 249 (249)
|+++|
T Consensus 240 a~~~G 244 (364)
T PLN02535 240 AVEVG 244 (364)
T ss_pred HHhcC
Confidence 99987
No 4
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-73 Score=530.65 Aligned_cols=243 Identities=31% Similarity=0.549 Sum_probs=219.8
Q ss_pred cCCChHHHHHHHHHhCChhhhhhhccCccchHHHHHHHHhhcccceeccccCCCCCCccceeecCcccccceeecccccc
Q 025657 6 EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQ 85 (249)
Q Consensus 6 ~~~~i~d~e~~A~~~Lp~~~~~Y~~gGa~de~t~~~N~~af~~~~l~pr~l~~v~~~d~st~llG~~~~~Pi~iaP~g~~ 85 (249)
.++|++|||++||++||+.+|+||+|||+||.|+++|+++|++|+|+||+|+||+++||+|+|||+++++||+|||+|++
T Consensus 2 ~~~~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~ 81 (381)
T PRK11197 2 IISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLT 81 (381)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 025657 86 KMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRL 165 (249)
Q Consensus 86 ~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~ 165 (249)
+|+||+||+++||||+++|++|++||.|++|+|||+++.+++.|||||+++|+++++++|+||+++||+|||||||+|+.
T Consensus 82 ~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~ 161 (381)
T PRK11197 82 GMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP 161 (381)
T ss_pred hccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 99999999999999999999999999999999999987777899999999999999999999999999999999999999
Q ss_pred CCchhhhhccCCCCCcccccccccc-----------------ccCCCCC-----CCCchhhhHhhhhcCCCCCHHHHHHH
Q 025657 166 GRREADIKNRFVLPPHLTLKNYEGL-----------------YIGKMDK-----TDDSGLASYVANQIDRSLNWKDVKWL 223 (249)
Q Consensus 166 g~Re~d~r~~~~~p~~~~~~~~~~~-----------------~~~~~~~-----~~~~~~~~~~~~~~~~~~tW~dl~wl 223 (249)
|+||+|+||+|.+|+ .+++++... .++|... ........+....+++++||+||+||
T Consensus 162 G~Rerd~rn~~~~p~-~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~l 240 (381)
T PRK11197 162 GARYRDAHSGMSGPN-AAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWI 240 (381)
T ss_pred CCChhhhhcCCCCCC-chhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHH
Confidence 999999999999885 244442210 1122211 11223344666778999999999999
Q ss_pred HHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 224 QTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 224 r~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
|+.|++|||||||++++||++|+++|
T Consensus 241 r~~~~~pvivKgV~s~~dA~~a~~~G 266 (381)
T PRK11197 241 RDFWDGPMVIKGILDPEDARDAVRFG 266 (381)
T ss_pred HHhCCCCEEEEecCCHHHHHHHHhCC
Confidence 99999999999999999999999987
No 5
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=7.3e-73 Score=522.55 Aligned_cols=238 Identities=39% Similarity=0.632 Sum_probs=216.5
Q ss_pred HHHHHHHHHhCChhhhhhhccCccchHHHHHHHHhhcccceeccccCCCCCCccceeecCcccccceeeccccccccCCC
Q 025657 11 MEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHP 90 (249)
Q Consensus 11 ~d~e~~A~~~Lp~~~~~Y~~gGa~de~t~~~N~~af~~~~l~pr~l~~v~~~d~st~llG~~~~~Pi~iaP~g~~~l~h~ 90 (249)
+|||+.||++||+.+|+||+|||+||.|+++|++||++|+|+||+|+||+++||+|+|||+++++||+|||+|+++|+||
T Consensus 1 ~D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 1 EDYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred ChHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchh
Q 025657 91 EGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREA 170 (249)
Q Consensus 91 ~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~ 170 (249)
+||+++||||+++|+||+|||.|++|+|||+++.+++.|||||++ |++++++||+||+++||++||||||+|+.|+||+
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~ 159 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYVV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRER 159 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchh
Confidence 999999999999999999999999999999988778899999996 6999999999999999999999999999999999
Q ss_pred hhhccCCCCCcccccccccc----------------ccCCCCCC---CCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCE
Q 025657 171 DIKNRFVLPPHLTLKNYEGL----------------YIGKMDKT---DDSGLASYVANQIDRSLNWKDVKWLQTITSLPI 231 (249)
Q Consensus 171 d~r~~~~~p~~~~~~~~~~~----------------~~~~~~~~---~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPi 231 (249)
|+||+|.+|++++++++... .+++.... ...+...+.....++.++|++|+|||+.|++||
T Consensus 160 d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pv 239 (361)
T cd04736 160 DLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKL 239 (361)
T ss_pred hhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCE
Confidence 99999999988887764321 01111111 112244456667889999999999999999999
Q ss_pred EEEccCCHHHHHHHhhCC
Q 025657 232 LVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 232 vlKGIl~~eDA~~A~~~~ 249 (249)
|+|||+++|||++|+++|
T Consensus 240 iiKgV~~~eda~~a~~~G 257 (361)
T cd04736 240 LVKGIVTAEDAKRCIELG 257 (361)
T ss_pred EEecCCCHHHHHHHHHCC
Confidence 999999999999999987
No 6
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00 E-value=8.6e-71 Score=512.53 Aligned_cols=242 Identities=34% Similarity=0.568 Sum_probs=213.6
Q ss_pred CCChHHHHHHHHHhCChhhhhhhccCccchHHHHHHHHhhcccceeccccCCCCCCccceeecCcccccceeeccccccc
Q 025657 7 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQK 86 (249)
Q Consensus 7 ~~~i~d~e~~A~~~Lp~~~~~Y~~gGa~de~t~~~N~~af~~~~l~pr~l~~v~~~d~st~llG~~~~~Pi~iaP~g~~~ 86 (249)
++|++|||+.||++||+.+|+||+||++||.|+++|+++|++|+|+||+|+||+++||+|+|||+++++||+|||+|+++
T Consensus 18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcC-CCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 025657 87 MAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTG-PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRL 165 (249)
Q Consensus 87 l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~-~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~ 165 (249)
|+||+||+++||||+++|++|++||.|++|+|||+++. +++.|||||+++|+++++++|+||+++||++||||||+|+.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~ 177 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL 177 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 99999999999999999999999999999999999874 47899999999999999999999999999999999999999
Q ss_pred CCchhhhhccCCCCCc--ccccccc-c----cccCCCCCC-------CCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCE
Q 025657 166 GRREADIKNRFVLPPH--LTLKNYE-G----LYIGKMDKT-------DDSGLASYVANQIDRSLNWKDVKWLQTITSLPI 231 (249)
Q Consensus 166 g~Re~d~r~~~~~p~~--~~~~~~~-~----~~~~~~~~~-------~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPi 231 (249)
|+||||+||+| .|.. .++.++. . ..+...... .......+....+++++||++|+|||+.|++||
T Consensus 178 g~Rerd~r~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pv 256 (383)
T cd03332 178 GWRPRDLDLGY-LPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPI 256 (383)
T ss_pred CCchhhhhcCC-CCCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCE
Confidence 99999999999 4521 2222211 0 001000000 112333455556789999999999999999999
Q ss_pred EEEccCCHHHHHHHhhCC
Q 025657 232 LVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 232 vlKGIl~~eDA~~A~~~~ 249 (249)
|+|||+++|||++|+++|
T Consensus 257 ivKgV~~~~dA~~a~~~G 274 (383)
T cd03332 257 VLKGILHPDDARRAVEAG 274 (383)
T ss_pred EEecCCCHHHHHHHHHCC
Confidence 999999999999999987
No 7
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=100.00 E-value=1.4e-70 Score=508.23 Aligned_cols=239 Identities=32% Similarity=0.523 Sum_probs=213.4
Q ss_pred cccCCChHHHHHHHHHhCChhhhhhhccCccchHHHHHHHHhhcccceeccccCCCCCCccceeecCcccccceeecccc
Q 025657 4 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTA 83 (249)
Q Consensus 4 ~~~~~~i~d~e~~A~~~Lp~~~~~Y~~gGa~de~t~~~N~~af~~~~l~pr~l~~v~~~d~st~llG~~~~~Pi~iaP~g 83 (249)
..+++|++|||+.||++||+.+|+||+|||+||+|+++|+++|++|+|+||+|+||+++||+|+|||+++++||+|||+|
T Consensus 10 ~~~~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g 89 (367)
T TIGR02708 10 YVDFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVA 89 (367)
T ss_pred CcCCCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcC-CCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecC
Q 025657 84 FQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTG-PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDT 162 (249)
Q Consensus 84 ~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~-~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~ 162 (249)
+++|+||+||+++||||+++|+||++||.|++|+|||+++. +++.|||||+++|+++++++|+||+++||+|||||||+
T Consensus 90 ~~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~ 169 (367)
T TIGR02708 90 AHKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADA 169 (367)
T ss_pred HhhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 99999999999999999999999999999999999999874 57899999999999999999999999999999999999
Q ss_pred CCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEccCCHHHH
Q 025657 163 PRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDG 242 (249)
Q Consensus 163 p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eDA 242 (249)
|+.|+||+|+||+|.+|......+ .. ........ ........++.++|++|+|||+.|++||+||||+++|||
T Consensus 170 p~~g~R~~d~r~~~~~p~~~~~~~--~~----~~~~~~~~-~~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv~~~eda 242 (367)
T TIGR02708 170 TVGGNREVDVRNGFVFPVGMPIVQ--EY----LPTGAGKS-MDNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDA 242 (367)
T ss_pred CCCCcchhhhhcCCCCCCccchhh--hh----cccCCccc-hhhhccccCCCCCHHHHHHHHHhcCCCEEEeCCCCHHHH
Confidence 999999999999999885432221 00 00000000 011122346899999999999999999999999999999
Q ss_pred HHHhhCC
Q 025657 243 SKLLSKE 249 (249)
Q Consensus 243 ~~A~~~~ 249 (249)
++|+++|
T Consensus 243 ~~a~~~G 249 (367)
T TIGR02708 243 DRALKAG 249 (367)
T ss_pred HHHHHcC
Confidence 9999987
No 8
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=5.5e-69 Score=496.34 Aligned_cols=238 Identities=35% Similarity=0.613 Sum_probs=214.2
Q ss_pred cCCChHHHHHHHHHhCChhhhhhhccCccchHHHHHHHHhhcccceeccccCCCCCCccceeecCcccccceeecccccc
Q 025657 6 EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQ 85 (249)
Q Consensus 6 ~~~~i~d~e~~A~~~Lp~~~~~Y~~gGa~de~t~~~N~~af~~~~l~pr~l~~v~~~d~st~llG~~~~~Pi~iaP~g~~ 85 (249)
+++|++|||++||++||+++|+||+|||+||+|+++|++||++|+|+||+|+||+++||+|++||+++++||+|||||++
T Consensus 4 ~~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~ 83 (351)
T cd04737 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAH 83 (351)
T ss_pred ccCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcC-CCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 86 KMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTG-PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 86 ~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~-~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
+|+||+||+++||||+++|++|++|+.|++|+|||+++. +++.|||||+++|+++++++|+||+++||++|+||||+|+
T Consensus 84 ~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 84 GLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999876 5789999999999999999999999999999999999999
Q ss_pred CCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHHH
Q 025657 165 LGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSK 244 (249)
Q Consensus 165 ~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~ 244 (249)
.|+|++|+||+|.+|.+++..+..... .....+... ....+++.+||++|+|||+.|++||+||||+++|||++
T Consensus 164 ~g~R~~d~r~~~~~p~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~ 237 (351)
T cd04737 164 GGNREADIRNKFQFPFGMPNLNHFSEG-----TGKGKGISE-IYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADV 237 (351)
T ss_pred CCcchHHHHhcCCCCcccchhhhhccc-----cccCcchhh-hhhhccCCCCHHHHHHHHHHhCCcEEEecCCCHHHHHH
Confidence 999999999999998655443221110 000001111 12345788999999999999999999999999999999
Q ss_pred HhhCC
Q 025657 245 LLSKE 249 (249)
Q Consensus 245 A~~~~ 249 (249)
|+++|
T Consensus 238 a~~~G 242 (351)
T cd04737 238 AINAG 242 (351)
T ss_pred HHHcC
Confidence 99987
No 9
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=1.1e-65 Score=473.97 Aligned_cols=232 Identities=44% Similarity=0.681 Sum_probs=212.3
Q ss_pred HHHHHHHHHhCChhhhhhhccCccchHHHHHHHHhhcccceeccccCCCCCCccceeecCcccccceeeccccccccCCC
Q 025657 11 MEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHP 90 (249)
Q Consensus 11 ~d~e~~A~~~Lp~~~~~Y~~gGa~de~t~~~N~~af~~~~l~pr~l~~v~~~d~st~llG~~~~~Pi~iaP~g~~~l~h~ 90 (249)
+|||++||++||+++|+||+|||+||+|+++|++||++|+|+||+|+|++++||+|+|||+++++||+|||||+++++||
T Consensus 1 ~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 1 HDFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred ChHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhc-CC-CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCc
Q 025657 91 EGECATARAASAAGTIMTLSSWATSSVEEVSST-GP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRR 168 (249)
Q Consensus 91 ~gE~~~AraA~~~gi~~~lss~ss~sleeia~~-~~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~R 168 (249)
+||.++||||+++|++|++||++++|+|||+++ .| ++.|||||+++|++.++++++||+++||+||+||||+|+.|+|
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r 160 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence 999999999999999999999999999999876 44 6899999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhC
Q 025657 169 EADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSK 248 (249)
Q Consensus 169 e~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~ 248 (249)
++|+||+|.+|.++++++.... ....+...+....+++..+|++|+|||+.|++|||||||++++||++|.++
T Consensus 161 ~~d~r~~~~~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~ 233 (344)
T cd02922 161 ERDERLKAEEAVSDGPAGKKTK-------AKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEY 233 (344)
T ss_pred hhhhhhcCCcCccccccccccc-------cccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHc
Confidence 9999999999876655442111 111123334455678899999999999999999999999999999999998
Q ss_pred C
Q 025657 249 E 249 (249)
Q Consensus 249 ~ 249 (249)
|
T Consensus 234 G 234 (344)
T cd02922 234 G 234 (344)
T ss_pred C
Confidence 7
No 10
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=100.00 E-value=2.6e-64 Score=467.01 Aligned_cols=233 Identities=43% Similarity=0.713 Sum_probs=207.0
Q ss_pred HHHhCChhhhhhhccCccchHHHHHHHHhhcccceeccccCCCCCCccceeecCcccccceeeccccccccCCChhhHHH
Q 025657 17 AKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECAT 96 (249)
Q Consensus 17 A~~~Lp~~~~~Y~~gGa~de~t~~~N~~af~~~~l~pr~l~~v~~~d~st~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~ 96 (249)
||++||+.+|+||+||+++|.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+|||||+++++||++|.++
T Consensus 1 Ar~~lp~~~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~l 80 (356)
T PF01070_consen 1 ARRRLPPRVFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERAL 80 (356)
T ss_dssp HHHHS-HHHHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHH
T ss_pred CccccCHHHHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccC
Q 025657 97 ARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF 176 (249)
Q Consensus 97 AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~ 176 (249)
|++|+++|++|+|||++++++|||+++.+++.|||||+++|++.+.++|+||+++||+||+||||+|+.|+|++|+||+|
T Consensus 81 AraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~ 160 (356)
T PF01070_consen 81 ARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGF 160 (356)
T ss_dssp HHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTC
T ss_pred HHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCccccccccc
Confidence 99999999999999999999999998877889999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccc---------CCC---C-CCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHH
Q 025657 177 VLPPHLTLKNYEGLYI---------GKM---D-KTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGS 243 (249)
Q Consensus 177 ~~p~~~~~~~~~~~~~---------~~~---~-~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~ 243 (249)
.+|++++++++..... .+. . .........+.....++.++|++|+|||+.|++|||||||+++|||+
T Consensus 161 ~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~ 240 (356)
T PF01070_consen 161 SVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAK 240 (356)
T ss_dssp CCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHH
T ss_pred CCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHH
Confidence 9999988887753210 000 1 12233455677778899999999999999999999999999999999
Q ss_pred HHhhCC
Q 025657 244 KLLSKE 249 (249)
Q Consensus 244 ~A~~~~ 249 (249)
+|+++|
T Consensus 241 ~~~~~G 246 (356)
T PF01070_consen 241 RAVDAG 246 (356)
T ss_dssp HHHHTT
T ss_pred HHHhcC
Confidence 999987
No 11
>PLN02979 glycolate oxidase
Probab=100.00 E-value=1.9e-60 Score=437.96 Aligned_cols=202 Identities=81% Similarity=1.176 Sum_probs=183.3
Q ss_pred ccceeccccCCCCCCccceeecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCc
Q 025657 48 RILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGI 127 (249)
Q Consensus 48 ~~~l~pr~l~~v~~~d~st~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~~~ 127 (249)
-|+|+||+|+||+++||+|+|||+++++||+|||+|+++|+||+||+++||||+++|++|++||.|++|+|||+++.+++
T Consensus 43 ~~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~~~~ 122 (366)
T PLN02979 43 FCDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGI 122 (366)
T ss_pred eeEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhccCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999877788
Q ss_pred eeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHh
Q 025657 128 RFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYV 207 (249)
Q Consensus 128 ~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (249)
.|||||+++|++++++||+||+++||+|||||||+|+.|+||+|+||+|.+|++++++++.....++.......+...+.
T Consensus 123 ~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
T PLN02979 123 RFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYV 202 (366)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999998777777543211211112233455566
Q ss_pred hhhcCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 208 ANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 208 ~~~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
...+++++||+||+|||+.|++|||||||++++||++|+++|
T Consensus 203 ~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~G 244 (366)
T PLN02979 203 AGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAG 244 (366)
T ss_pred hhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcC
Confidence 777899999999999999999999999999999999999987
No 12
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=100.00 E-value=1e-49 Score=368.58 Aligned_cols=235 Identities=37% Similarity=0.522 Sum_probs=214.1
Q ss_pred hHHHHHHHHHhCChhhhhhhccCccchHHHHHHHHhhcccceeccccCCCCCCccceeecCcccccceeeccccccccCC
Q 025657 10 VMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAH 89 (249)
Q Consensus 10 i~d~e~~A~~~Lp~~~~~Y~~gGa~de~t~~~N~~af~~~~l~pr~l~~v~~~d~st~llG~~~~~Pi~iaP~g~~~l~h 89 (249)
+.|+++.|++++| ..|+|+.+|+++|+|+++|+++|++|.|+||+|++++++|++|++||+++++||+|+||++++|.|
T Consensus 1 ~~~~~~~a~~~~~-~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~ 79 (360)
T COG1304 1 VADLRRAAQRRLP-KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAH 79 (360)
T ss_pred CcchHHHHhhhcc-hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccC
Confidence 4689999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCch
Q 025657 90 PEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRRE 169 (249)
Q Consensus 90 ~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re 169 (249)
++||...|++|+++|+++++|+.+|+++||+.+..+ ||+|+..||+.+.++++|++++||+++++|||+|+.|+|+
T Consensus 80 ~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~----~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~ 155 (360)
T COG1304 80 PEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP----FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERE 155 (360)
T ss_pred hhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc----hhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHH
Confidence 999999999999999999999999999999987644 9999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCccccccccccccC---CCCC-CCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHH
Q 025657 170 ADIKNRFVLPPHLTLKNYEGLYIG---KMDK-TDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKL 245 (249)
Q Consensus 170 ~d~r~~~~~p~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A 245 (249)
+|.+|++..|+.....|+...... +... .....+..+.....+|.++|+|+.||++.|.+|+++|||++|+||..|
T Consensus 156 ~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a 235 (360)
T COG1304 156 RDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGA 235 (360)
T ss_pred HHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhh
Confidence 999999999877777776543211 1111 111245677778889999999999999999999999999999999999
Q ss_pred hhCC
Q 025657 246 LSKE 249 (249)
Q Consensus 246 ~~~~ 249 (249)
.+.|
T Consensus 236 ~~tg 239 (360)
T COG1304 236 GGTG 239 (360)
T ss_pred ccCC
Confidence 9875
No 13
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=100.00 E-value=2.4e-41 Score=307.04 Aligned_cols=193 Identities=53% Similarity=0.871 Sum_probs=184.0
Q ss_pred HHHHHHHHHhCChhhhhhhccCccchHHHHHHHHhhcccceeccccCCCCCCccceeecCcccccceeeccccccccCCC
Q 025657 11 MEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHP 90 (249)
Q Consensus 11 ~d~e~~A~~~Lp~~~~~Y~~gGa~de~t~~~N~~af~~~~l~pr~l~~v~~~d~st~llG~~~~~Pi~iaP~g~~~l~h~ 90 (249)
+|||..|+++||+.+|+|+.+|++++.|+++|+.+|++|+|+||+|++++++||+|+|||++++.||+|+||++.++.|+
T Consensus 1 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~ 80 (299)
T cd02809 1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80 (299)
T ss_pred ChHHHHHHHhCCHHHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred hhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchh
Q 025657 91 EGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREA 170 (249)
Q Consensus 91 ~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~ 170 (249)
+++.++|++|++.|+++++|++++.|+|+|.+..+.+.|+|||...|.+.+.++++++++.|+++|.+++|+|..|.|
T Consensus 81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-- 158 (299)
T cd02809 81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-- 158 (299)
T ss_pred hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--
Confidence 999999999999999999999999999999987778899999998899999999999999999999999999874433
Q ss_pred hhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 171 DIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 171 d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
.+|+.++||++.|++||++|||++++||++|.++|
T Consensus 159 --------------------------------------------~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G 193 (299)
T cd02809 159 --------------------------------------------LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAG 193 (299)
T ss_pred --------------------------------------------CCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCC
Confidence 37899999999999999999999999999999987
No 14
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.71 E-value=8.2e-17 Score=148.17 Aligned_cols=163 Identities=24% Similarity=0.343 Sum_probs=115.9
Q ss_pred HHHHhhcccceeccccC--CCCCCccceeecCcccccceeeccccccccCCChhh---HHHHHHHHhcCCcEEecCCCC-
Q 025657 41 ENRNAFSRILFRPRILR--DVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGE---CATARAASAAGTIMTLSSWAT- 114 (249)
Q Consensus 41 ~N~~af~~~~l~pr~l~--~v~~~d~st~llG~~~~~Pi~iaP~g~~~l~h~~gE---~~~AraA~~~gi~~~lss~ss- 114 (249)
.+...|++|+|+|+.|+ +++++||+|+|||++++.||+++||++. +...+ ..+|++|.++|++|++||++.
T Consensus 17 ~~~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg---~~~~~~in~~La~~a~~~g~~~~~Gs~~~~ 93 (326)
T cd02811 17 GGSTGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGG---SEKAKEINRNLAEAAEELGIAMGVGSQRAA 93 (326)
T ss_pred cCCCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCC---ChHHHHHHHHHHHHHHHcCCCeEecCchhh
Confidence 35667999999999999 7899999999999999999999999864 34333 599999999999999999863
Q ss_pred -------CCHHHHHhcCC-CceeEEEcccc----ChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCcc
Q 025657 115 -------SSVEEVSSTGP-GIRFFQLYVTK----HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHL 182 (249)
Q Consensus 115 -------~sleeia~~~~-~~~wfQlY~~~----d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~ 182 (249)
.+++.+.+..+ .+..--+.... +.+...+.+ +..++.++-+.++.+.. ...|.
T Consensus 94 ~~~~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i---~~~~adalel~l~~~q~----------~~~~~-- 158 (326)
T cd02811 94 LEDPELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAV---EMIEADALAIHLNPLQE----------AVQPE-- 158 (326)
T ss_pred ccChhhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHH---HhcCCCcEEEeCcchHh----------hcCCC--
Confidence 13344454444 33322232222 444433333 34578888887753320 00110
Q ss_pred ccccccccccCCCCCCCCchhhhHhhhhcCCCC-CH-HHHHHHHHhCCCCEEEEcc---CCHHHHHHHhhCC
Q 025657 183 TLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL-NW-KDVKWLQTITSLPILVKGV---LTAEDGSKLLSKE 249 (249)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-tW-~dl~wlr~~~~lPivlKGI---l~~eDA~~A~~~~ 249 (249)
. +..+ .| +.|++|++.++.||++|++ +++++|+++.++|
T Consensus 159 ----------------~------------~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~G 202 (326)
T cd02811 159 ----------------G------------DRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAG 202 (326)
T ss_pred ----------------C------------CcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcC
Confidence 0 0011 24 6799999999999999999 9999999999887
No 15
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.67 E-value=5.6e-16 Score=144.05 Aligned_cols=163 Identities=23% Similarity=0.359 Sum_probs=113.1
Q ss_pred HhhcccceeccccC--CCCCCccceeecCcccccceeeccccccccCCCh-hh--HHHHHHHHhcCCcEEecCCCC----
Q 025657 44 NAFSRILFRPRILR--DVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPE-GE--CATARAASAAGTIMTLSSWAT---- 114 (249)
Q Consensus 44 ~af~~~~l~pr~l~--~v~~~d~st~llG~~~~~Pi~iaP~g~~~l~h~~-gE--~~~AraA~~~gi~~~lss~ss---- 114 (249)
..|++|+|.|+.|+ +++++||||+|||+++++||+|+||++.. .. .+ .++|++|+++|+++++|+++.
T Consensus 28 ~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs---~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~ 104 (352)
T PRK05437 28 TGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGS---EKAKEINRKLAEAAEELGIAMGVGSQRAALKD 104 (352)
T ss_pred CChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCCC---hhHHHHHHHHHHHHHHcCCCeEecccHhhccC
Confidence 45999999999999 67899999999999999999999988653 32 22 499999999999999999873
Q ss_pred ----CCHHHHHhcCC-CceeEEEccccChHH-HHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCcccccccc
Q 025657 115 ----SSVEEVSSTGP-GIRFFQLYVTKHRNV-DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYE 188 (249)
Q Consensus 115 ----~sleeia~~~~-~~~wfQlY~~~d~~~-~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~ 188 (249)
.+++.|.+..| .+.+--|........ ..++.+.++..++.|+-|.+..+.- ...|.
T Consensus 105 ~~~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe----------~~~p~-------- 166 (352)
T PRK05437 105 PELADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQE----------LVQPE-------- 166 (352)
T ss_pred hhhHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchh----------hcCCC--------
Confidence 12334444444 333443333322122 1233344455677888776543220 00110
Q ss_pred ccccCCCCCCCCchhhhHhhhhcCCCC-CH-HHHHHHHHhCCCCEEEEcc---CCHHHHHHHhhCC
Q 025657 189 GLYIGKMDKTDDSGLASYVANQIDRSL-NW-KDVKWLQTITSLPILVKGV---LTAEDGSKLLSKE 249 (249)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-tW-~dl~wlr~~~~lPivlKGI---l~~eDA~~A~~~~ 249 (249)
. +..+ .| +.|+++++.++.||+||++ +++++|+.+.++|
T Consensus 167 ----------g------------~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~G 210 (352)
T PRK05437 167 ----------G------------DRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAG 210 (352)
T ss_pred ----------C------------cccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcC
Confidence 0 0011 23 6799999999999999999 9999999998887
No 16
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.60 E-value=1.4e-14 Score=133.72 Aligned_cols=162 Identities=22% Similarity=0.309 Sum_probs=109.0
Q ss_pred hhcccceeccccCC--CCCCccceeecCcccccceeeccccccccCCChh-h--HHHHHHHHhcCCcEEecCCCCC----
Q 025657 45 AFSRILFRPRILRD--VSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEG-E--CATARAASAAGTIMTLSSWATS---- 115 (249)
Q Consensus 45 af~~~~l~pr~l~~--v~~~d~st~llG~~~~~Pi~iaP~g~~~l~h~~g-E--~~~AraA~~~gi~~~lss~ss~---- 115 (249)
.|++|+|+|..|+. ++++||||+|||++++.||+++||++. ++.+ + ..+|++|+++|++++++|++..
T Consensus 22 ~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg---~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~ 98 (333)
T TIGR02151 22 GFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGG---SEEAGKINRNLARAARELGIPMGVGSQRAALKDP 98 (333)
T ss_pred CcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCC---chhHHHHHHHHHHHHHHcCCCeEEcCchhhccCh
Confidence 39999999999995 578999999999999999999998765 3333 3 3999999999999999998721
Q ss_pred ----CHHHHHhcCCC-ceeEEEccccChH-HHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccc
Q 025657 116 ----SVEEVSSTGPG-IRFFQLYVTKHRN-VDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEG 189 (249)
Q Consensus 116 ----sleeia~~~~~-~~wfQlY~~~d~~-~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~ 189 (249)
+.+.+.+..+. +..-.+......+ ...+..+..+..++.++-+.+..+.. ...|
T Consensus 99 ~~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~----------~~~p---------- 158 (333)
T TIGR02151 99 ETADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQE----------LVQP---------- 158 (333)
T ss_pred hhHhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCccccc----------ccCC----------
Confidence 23334443443 2222221111111 02233333344566777666643220 0011
Q ss_pred cccCCCCCCCCchhhhHhhhhcCCCC-CH-HHHHHHHHhCCCCEEEEcc---CCHHHHHHHhhCC
Q 025657 190 LYIGKMDKTDDSGLASYVANQIDRSL-NW-KDVKWLQTITSLPILVKGV---LTAEDGSKLLSKE 249 (249)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~-tW-~dl~wlr~~~~lPivlKGI---l~~eDA~~A~~~~ 249 (249)
.. +..+ .| +.|++|++.++.||+||++ +++++|+++.++|
T Consensus 159 --------~g------------~~~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aG 203 (333)
T TIGR02151 159 --------EG------------DRNFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAG 203 (333)
T ss_pred --------CC------------CcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcC
Confidence 00 0111 25 7899999999999999999 9999999999887
No 17
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.39 E-value=1.1e-12 Score=120.40 Aligned_cols=149 Identities=15% Similarity=0.106 Sum_probs=107.9
Q ss_pred hhcccceeccccCCC--CCCccceeecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHh
Q 025657 45 AFSRILFRPRILRDV--SKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS 122 (249)
Q Consensus 45 af~~~~l~pr~l~~v--~~~d~st~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~ 122 (249)
.|++++|+|..++.. +++|++|+|+|.++++||+|++|- ...+..+|++|++.|...++-- .++|+..+
T Consensus 3 ~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~------t~in~~LA~~a~~~G~~~i~hK---~~~E~~~s 73 (321)
T TIGR01306 3 DYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQ------TIIDEKLAEQLAENGYFYIMHR---FDEESRIP 73 (321)
T ss_pred CcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccc------hhhhHHHHHHHHHcCCEEEEec---CCHHHHHH
Confidence 499999999999965 689999999999999999999972 2578899999999999999865 36776442
Q ss_pred ----cCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCC
Q 025657 123 ----TGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKT 198 (249)
Q Consensus 123 ----~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~ 198 (249)
..+.....=+-+-...+ ..+.+..-.++|..+-+|.+|+... .
T Consensus 74 fvrk~k~~~L~v~~SvG~t~e-~~~r~~~lv~a~~~~d~i~~D~ahg-~------------------------------- 120 (321)
T TIGR01306 74 FIKDMQERGLFASISVGVKAC-EYEFVTQLAEEALTPEYITIDIAHG-H------------------------------- 120 (321)
T ss_pred HHHhccccccEEEEEcCCCHH-HHHHHHHHHhcCCCCCEEEEeCccC-c-------------------------------
Confidence 22221111111111111 1233344456786666777886441 0
Q ss_pred CCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 199 DDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 199 ~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
...-++.|+|||+.|+.|+|||| |.++|+|+.++++|
T Consensus 121 --------------s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aG 158 (321)
T TIGR01306 121 --------------SNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAG 158 (321)
T ss_pred --------------hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcC
Confidence 01235789999999999999999 99999999999987
No 18
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.21 E-value=4.8e-11 Score=109.83 Aligned_cols=145 Identities=14% Similarity=0.124 Sum_probs=101.5
Q ss_pred hhcccceeccccCCC--CCCccceeecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHh
Q 025657 45 AFSRILFRPRILRDV--SKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS 122 (249)
Q Consensus 45 af~~~~l~pr~l~~v--~~~d~st~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~ 122 (249)
.|++++|+|..|+.. +++|+||+|+|.++++||||++|. ..-+..+|++|++.|...++-- +++|+..+
T Consensus 6 ~Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~------t~iN~~LA~~a~~~G~~~~~~k---~~~e~~~~ 76 (326)
T PRK05458 6 DYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQ------TIIDEKIAEWLAENGYFYIMHR---FDPEARIP 76 (326)
T ss_pred CccceEEecCCCCCCCHHHcccceEECCcEecCcEEEeccc------chhHHHHHHHHHHcCCEEEEec---CCHHHHHH
Confidence 399999999999965 589999999999999999999983 2567799999999999888755 36777542
Q ss_pred ----cCCCceeEEEcccc----ChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCC
Q 025657 123 ----TGPGIRFFQLYVTK----HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGK 194 (249)
Q Consensus 123 ----~~~~~~wfQlY~~~----d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~ 194 (249)
..+. ||+..- ..+. .+.++.-.+||+.+-+|.+|+.. |.-
T Consensus 77 ~~r~~~~~----~l~v~~~vg~~~~~-~~~~~~Lv~ag~~~d~i~iD~a~-gh~-------------------------- 124 (326)
T PRK05458 77 FIKDMHEQ----GLIASISVGVKDDE-YDFVDQLAAEGLTPEYITIDIAH-GHS-------------------------- 124 (326)
T ss_pred HHHhcccc----ccEEEEEecCCHHH-HHHHHHHHhcCCCCCEEEEECCC-Cch--------------------------
Confidence 2222 333322 2222 23333334676634455677643 100
Q ss_pred CCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 195 MDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
..-.+-|+|||+.++.++|++| |.++|+|+.+.++|
T Consensus 125 -------------------~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aG 161 (326)
T PRK05458 125 -------------------DSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAG 161 (326)
T ss_pred -------------------HHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcC
Confidence 0012348999999985556665 99999999999987
No 19
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.82 E-value=6.3e-08 Score=90.78 Aligned_cols=178 Identities=16% Similarity=0.195 Sum_probs=107.3
Q ss_pred hhcccceeccccCCC--CCCccceeecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCC----CCCHH
Q 025657 45 AFSRILFRPRILRDV--SKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWA----TSSVE 118 (249)
Q Consensus 45 af~~~~l~pr~l~~v--~~~d~st~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~s----s~sle 118 (249)
.|+++.|+|. ++.+ +++|+++.+-+..+..||+.+||... .+..++.+.+++|-.-++.+.+ ..+.|
T Consensus 17 ~fddV~lvp~-~~~~~~~dvdls~~~~~~~i~~Piv~a~M~gV------t~~~la~avs~~GglGvl~~~gl~~~~~~~e 89 (368)
T PRK08649 17 GLDEIAIVPS-RRTRDPEDVSTSWQIDAYRFEIPIIASPMDAV------VSPETAIELGKLGGLGVLNLEGLWTRYEDPE 89 (368)
T ss_pred CcceEEEeCC-CCCCCHHHceeeeeecceeccCcEeccCCccc------CCHHHHHHHHhCCCceEEeeccccccCCCHH
Confidence 5999999999 7754 68999988888999999999997654 3668999999999876666322 23566
Q ss_pred HHHhc----CCC---ceeEEEcc-ccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCcccccccccc
Q 025657 119 EVSST----GPG---IRFFQLYV-TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGL 190 (249)
Q Consensus 119 eia~~----~~~---~~wfQlY~-~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~ 190 (249)
++.+. .+. ...-++|. +.|.+...++++..+++| +-|++-. ...+...+...-.-.+...-.+.+.
T Consensus 90 ~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~---V~v~vr~---~~~~~~e~a~~l~eaGvd~I~vhgr 163 (368)
T PRK08649 90 PILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAG---VIVAVSL---SPQRAQELAPTVVEAGVDLFVIQGT 163 (368)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCe---EEEEEec---CCcCHHHHHHHHHHCCCCEEEEecc
Confidence 65432 110 00111121 246778888888888875 3333322 0000000000000000000000000
Q ss_pred ccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 191 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
. . -..+....-+|+++..+++..+.|||..+|.++++|+.+.++|
T Consensus 164 ---------t--~---~~~h~~~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aG 208 (368)
T PRK08649 164 ---------V--V---SAEHVSKEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTG 208 (368)
T ss_pred ---------c--h---hhhccCCcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcC
Confidence 0 0 0000111227999998888899999999999999999999876
No 20
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=98.74 E-value=1.2e-07 Score=87.21 Aligned_cols=150 Identities=19% Similarity=0.195 Sum_probs=102.1
Q ss_pred hhcccceeccccC--CCCCCccceeecCc-----ccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCH
Q 025657 45 AFSRILFRPRILR--DVSKIDMTTTVLGF-----NISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSV 117 (249)
Q Consensus 45 af~~~~l~pr~l~--~v~~~d~st~llG~-----~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sl 117 (249)
.|+++.|+|+--. .-+++|++++|-.+ .+..||+-|.|-- -+|..+|.+-++.|...++-- .+++
T Consensus 9 ~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdt------v~~~~mA~~la~~g~~~~iHk--~~~~ 80 (343)
T TIGR01305 9 DFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDT------VGTFEMAAALSQHSIFTAIHK--HYSV 80 (343)
T ss_pred CccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCc------ccCHHHHHHHHHCCCeEEEee--CCCH
Confidence 5899999998333 33789999998644 6889999877432 268889999999999999854 4577
Q ss_pred HHHHh----cCCCceeEEEcc-ccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCcccccccccccc
Q 025657 118 EEVSS----TGPGIRFFQLYV-TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYI 192 (249)
Q Consensus 118 eeia~----~~~~~~wfQlY~-~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~ 192 (249)
|+-++ ..+.. --++.+ ..-.+...+.++...++|...-+++||+.. |. .
T Consensus 81 e~~~~~v~~~~~~~-~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~Ah-Gh---------s--------------- 134 (343)
T TIGR01305 81 DEWKAFATNSSPDC-LQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVAN-GY---------S--------------- 134 (343)
T ss_pred HHHHHHHHhhcccc-cceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCC-Cc---------H---------------
Confidence 77432 22211 111222 122333335555555676444555777644 11 0
Q ss_pred CCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 193 GKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
..--++|+|||+.|+.++|+|| |.++|||+.++++|
T Consensus 135 ---------------------~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aG 171 (343)
T TIGR01305 135 ---------------------EHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSG 171 (343)
T ss_pred ---------------------HHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcC
Confidence 0112689999999999999999 99999999999987
No 21
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=98.47 E-value=1.8e-06 Score=79.77 Aligned_cols=147 Identities=21% Similarity=0.294 Sum_probs=101.3
Q ss_pred hhcccceeccccC-CCCCCccceeecC-cccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHh
Q 025657 45 AFSRILFRPRILR-DVSKIDMTTTVLG-FNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS 122 (249)
Q Consensus 45 af~~~~l~pr~l~-~v~~~d~st~llG-~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~ 122 (249)
.|+++.|+|..-. +.+++|++|.|.+ ..+..||+.|||... .|..+|.+.+++|-.-++.. +.++|+..+
T Consensus 3 ~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~v------t~~~ma~ava~~GglGvi~~--~~~~~~~~~ 74 (325)
T cd00381 3 TFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTV------TESEMAIAMARLGGIGVIHR--NMSIEEQAE 74 (325)
T ss_pred CcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcC------CcHHHHHHHHHCCCEEEEeC--CCCHHHHHH
Confidence 4899999998643 4578999999998 889999999998754 25677777778887666653 356676643
Q ss_pred c---CCCc-eeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCC
Q 025657 123 T---GPGI-RFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKT 198 (249)
Q Consensus 123 ~---~~~~-~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~ 198 (249)
. ..++ ...+. +.. +....+.++.+.++|++.|+|+. .. |..
T Consensus 75 ~i~~vk~~l~v~~~-~~~-~~~~~~~~~~l~eagv~~I~vd~--~~-G~~------------------------------ 119 (325)
T cd00381 75 EVRKVKGRLLVGAA-VGT-REDDKERAEALVEAGVDVIVIDS--AH-GHS------------------------------ 119 (325)
T ss_pred HHHHhccCceEEEe-cCC-ChhHHHHHHHHHhcCCCEEEEEC--CC-CCc------------------------------
Confidence 2 1122 22333 222 23345666777788998877544 11 110
Q ss_pred CCchhhhHhhhhcCCCCCHHHHHHHHHhCC-CCEEEEccCCHHHHHHHhhCC
Q 025657 199 DDSGLASYVANQIDRSLNWKDVKWLQTITS-LPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 199 ~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~-lPivlKGIl~~eDA~~A~~~~ 249 (249)
...++-+++||+..+ .||++-.|.++++|+.+.++|
T Consensus 120 ---------------~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aG 156 (325)
T cd00381 120 ---------------VYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAG 156 (325)
T ss_pred ---------------HHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcC
Confidence 111356899999875 899999999999999999987
No 22
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.41 E-value=2.8e-06 Score=79.74 Aligned_cols=180 Identities=12% Similarity=0.123 Sum_probs=105.8
Q ss_pred Hhhcccceecc-ccCCCCCCccceeecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCC----CCCCHH
Q 025657 44 NAFSRILFRPR-ILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSW----ATSSVE 118 (249)
Q Consensus 44 ~af~~~~l~pr-~l~~v~~~d~st~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~----ss~sle 118 (249)
-.|++|.|+|. .=++.+++||+..+=+.++..||+.|||++.. +..++..+.++|-+-+||.. .....+
T Consensus 13 ~~~d~i~~vp~~~t~~~~~v~~~~~i~~~~l~~PivlAPMagVt------d~~fr~~~~~~Galgvvsaegl~~~~~~~~ 86 (369)
T TIGR01304 13 YSLDDISVVPSRRTRSSKDVDTAWQIDAYRFELPFIAHPMDALV------SPEFAIELGELGGLGVLNLEGLWGRHEDPD 86 (369)
T ss_pred CCcceEEEcCCCCCCChhhccceeEEcceecCCceeecCCCccc------CHHHHHHHHHcCCcccccchHHHhcCCCHH
Confidence 36899999997 44466788888887778899999999987653 67899999999996667641 112223
Q ss_pred HH----HhcCCCc------ee-EEEcc-ccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCcccccc
Q 025657 119 EV----SSTGPGI------RF-FQLYV-TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKN 186 (249)
Q Consensus 119 ei----a~~~~~~------~w-fQlY~-~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~ 186 (249)
.+ ....+.+ .. -++|. +.+.+++.++++.+++++ |||=.........++-... .-
T Consensus 87 ~~~~QI~g~~~~~~~a~aa~~~~e~~~~~~~p~l~~~ii~~vr~a~-----VtvkiRl~~~~~~e~a~~l-~e------- 153 (369)
T TIGR01304 87 PAIAKIAEAYEEGDQAAATRLLQELHAAPLKPELLGERIAEVRDSG-----VITAVRVSPQNAREIAPIV-VK------- 153 (369)
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHcCCCccChHHHHHHHHHHHhcc-----eEEEEecCCcCHHHHHHHH-HH-------
Confidence 22 2211110 01 11222 146788888888888886 3332211000000000000 00
Q ss_pred ccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 187 YEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
.+.++ +. -...... .......-+|.+|.++++..+.|||+.||.+++||+.+.+.|
T Consensus 154 -AGad~--I~-ihgrt~~---q~~~sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aG 209 (369)
T TIGR01304 154 -AGADL--LV-IQGTLVS---AEHVSTSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTG 209 (369)
T ss_pred -CCCCE--EE-Eeccchh---hhccCCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcC
Confidence 00000 00 0000000 001112346999999999999999999999999999999876
No 23
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.10 E-value=1.9e-05 Score=74.93 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=52.8
Q ss_pred hhcccceeccccC-CCCCCccceeec-CcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHH
Q 025657 45 AFSRILFRPRILR-DVSKIDMTTTVL-GFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS 121 (249)
Q Consensus 45 af~~~~l~pr~l~-~v~~~d~st~ll-G~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia 121 (249)
-|+++.|+|..-. ..+++|++|.|. ...+..||+-|||... .+-.+|.+.+++|-.-+++. +.++|++.
T Consensus 11 tfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~V------t~~~lA~AvA~aGGlGvI~~--~~~~e~l~ 81 (404)
T PRK06843 11 TFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTV------TESQMAIAIAKEGGIGIIHK--NMSIEAQR 81 (404)
T ss_pred CccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCC------CCHHHHHHHHHCCCEEEecC--CCCHHHHH
Confidence 5899999998543 336788888876 4567899999998654 26678888889988888873 57888764
No 24
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=97.46 E-value=0.0005 Score=61.01 Aligned_cols=100 Identities=24% Similarity=0.357 Sum_probs=76.0
Q ss_pred CceeEEEccccChH----HHHHHHHHHHHc---CCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCC
Q 025657 126 GIRFFQLYVTKHRN----VDAQLVKRAERA---GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKT 198 (249)
Q Consensus 126 ~~~wfQlY~~~d~~----~~~~li~rA~~a---G~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~ 198 (249)
+..|++|-+..|.. ...+.+++|+.. |+..+-++.|.++..+|-.++.-.+.+|. + ..
T Consensus 90 ~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPl--------g-------~p 154 (248)
T cd04728 90 GTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPL--------G-------SP 154 (248)
T ss_pred CCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCC--------C-------cC
Confidence 56799999988765 456889999998 99999999999999988888743332220 0 00
Q ss_pred CCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 199 DDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 199 ~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
-+++ .+-.+++-|+.|++..+.||++-| |-+|+||.+|.+.|
T Consensus 155 IGsg---------~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelG 197 (248)
T cd04728 155 IGSG---------QGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELG 197 (248)
T ss_pred CCCC---------CCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcC
Confidence 0000 123368899999999899999986 99999999999987
No 25
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=97.28 E-value=0.005 Score=58.38 Aligned_cols=49 Identities=24% Similarity=0.270 Sum_probs=39.4
Q ss_pred ccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHh
Q 025657 72 NISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS 122 (249)
Q Consensus 72 ~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~ 122 (249)
.+..||+++||++..+ -++.-.++|.||..+|....++- +..+.|++..
T Consensus 75 ~i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Ge-gg~~~~~~~~ 123 (392)
T cd02808 75 KLDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGE-GGELPEEREG 123 (392)
T ss_pred ccccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecC-CCCCHHHHhh
Confidence 3479999999997765 45667899999999999999886 4567787763
No 26
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=97.28 E-value=0.0058 Score=55.51 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEccCCHHH----HHHHhhCC
Q 025657 213 RSLNWKDVKWLQTITSLPILVKGVLTAED----GSKLLSKE 249 (249)
Q Consensus 213 ~~~tW~dl~wlr~~~~lPivlKGIl~~eD----A~~A~~~~ 249 (249)
+.+.++-++++|+.++.||.+|--.+.+| |+.+.++|
T Consensus 142 ~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G 182 (301)
T PRK07259 142 PELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAG 182 (301)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcC
Confidence 45678889999999999999997766666 45555554
No 27
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=97.19 E-value=0.0096 Score=54.24 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=55.3
Q ss_pred CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhh
Q 025657 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS 205 (249)
Q Consensus 126 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (249)
.+...|+.-..+.+...+.+++++++|+.+|-|.+.+|..-.+ + ++...
T Consensus 100 ~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~----~-~~G~~-------------------------- 148 (299)
T cd02940 100 KILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPE----R-GMGAA-------------------------- 148 (299)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCC----C-CCchh--------------------------
Confidence 3567888544366777778888888888888888888773100 0 00000
Q ss_pred HhhhhcCCCCCHHHHHHHHHhCCCCEEEEccCCH----HHHHHHhhCC
Q 025657 206 YVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA----EDGSKLLSKE 249 (249)
Q Consensus 206 ~~~~~~~~~~tW~dl~wlr~~~~lPivlKGIl~~----eDA~~A~~~~ 249 (249)
...++...=+-++++|+.++.||.||--... +.|+.+.++|
T Consensus 149 ---l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G 193 (299)
T cd02940 149 ---VGQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGG 193 (299)
T ss_pred ---hccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcC
Confidence 0001222234578899999999999943222 6677777765
No 28
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=97.17 E-value=0.011 Score=53.66 Aligned_cols=142 Identities=18% Similarity=0.215 Sum_probs=84.0
Q ss_pred cceeecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEec-C--------------------------CCCCC
Q 025657 64 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-S--------------------------WATSS 116 (249)
Q Consensus 64 ~st~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~ls-s--------------------------~ss~s 116 (249)
++|+++|.++..||++||.... ...|. .+...+.|..+++. | ..+..
T Consensus 1 l~~~~~g~~l~npi~~aag~~~----~~~~~--~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g 74 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMG----SGVES--LRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG 74 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCC----CCHHH--HHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence 4789999999999999993221 22222 22333446666554 1 11223
Q ss_pred HHH----HHhc---CCCceeEEEccccChHHHHHHHHHHHHcC--CcEEEEeecCCCCCCchhhhhccCCCCCccccccc
Q 025657 117 VEE----VSST---GPGIRFFQLYVTKHRNVDAQLVKRAERAG--FKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY 187 (249)
Q Consensus 117 lee----ia~~---~~~~~wfQlY~~~d~~~~~~li~rA~~aG--~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~ 187 (249)
++. +... .+.+...|++- .+.+...+..+..++++ +.+|-|.+=+|..- +..
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~g-~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~--------~~g---------- 135 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVYG-SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK--------GGG---------- 135 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEeec-CCHHHHHHHHHHHHhccCccCEEEEECCCCCCC--------CCc----------
Confidence 332 2211 12357888853 45566667777777763 78887777776631 100
Q ss_pred cccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEccCCHHH----HHHHhhCC
Q 025657 188 EGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAED----GSKLLSKE 249 (249)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eD----A~~A~~~~ 249 (249)
..+ ..++.+.++-++++|+.++.||.+|--.+.+| |+.+.++|
T Consensus 136 --~~l-----------------~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G 182 (300)
T TIGR01037 136 --IAI-----------------GQDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAG 182 (300)
T ss_pred --ccc-----------------ccCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcC
Confidence 000 01234557889999999999999997656655 45555554
No 29
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.13 E-value=0.0051 Score=59.27 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=31.2
Q ss_pred CHHHHHHHHHh-CCCCEEEEccCCHHHHHHHhhCC
Q 025657 216 NWKDVKWLQTI-TSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 216 tW~dl~wlr~~-~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
-|+.|+|||+. +++||++++|.++|+|+.++++|
T Consensus 252 ~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aG 286 (450)
T TIGR01302 252 VIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAG 286 (450)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhC
Confidence 45789999999 58999999999999999999987
No 30
>PRK00208 thiG thiazole synthase; Reviewed
Probab=97.08 E-value=0.0023 Score=56.89 Aligned_cols=100 Identities=25% Similarity=0.362 Sum_probs=75.5
Q ss_pred CceeEEEccccChH----HHHHHHHHHHHc---CCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCC
Q 025657 126 GIRFFQLYVTKHRN----VDAQLVKRAERA---GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKT 198 (249)
Q Consensus 126 ~~~wfQlY~~~d~~----~~~~li~rA~~a---G~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~ 198 (249)
+..|++|-+..|.. ...+.+++|+.. |+..+-++.|.++..+|-.++.-.+-+|. ... .+
T Consensus 90 ~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPl----g~p----IG----- 156 (250)
T PRK00208 90 GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPL----GAP----IG----- 156 (250)
T ss_pred CCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCC----CcC----CC-----
Confidence 56799999988765 456889999998 99999999999999998888743332220 000 00
Q ss_pred CCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 199 DDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 199 ~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
.+ .+-.+++.|+.+++..+.|||+- ||-+|+||.+|.+.|
T Consensus 157 --sg---------~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelG 197 (250)
T PRK00208 157 --SG---------LGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELG 197 (250)
T ss_pred --CC---------CCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcC
Confidence 00 02235788999999988999986 699999999999987
No 31
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.07 E-value=0.0098 Score=58.10 Aligned_cols=109 Identities=22% Similarity=0.355 Sum_probs=70.3
Q ss_pred hhcccceeccccC-CCCCCccceeecC-cccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHh
Q 025657 45 AFSRILFRPRILR-DVSKIDMTTTVLG-FNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS 122 (249)
Q Consensus 45 af~~~~l~pr~l~-~v~~~d~st~llG-~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~ 122 (249)
-|+++.|+|..-. ..+++|++|.+-. ..+..||+-|||.-. .|..+|.+-+++|=.-++. .+.|+|+.++
T Consensus 19 t~ddv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~v------t~~~ma~a~a~~GglGvi~--~~~~~e~~~~ 90 (495)
T PTZ00314 19 TYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTV------TEHKMAIAMALMGGIGVIH--NNCSIEEQVE 90 (495)
T ss_pred CccceEecccccccccccccccccccCCcccCCceeecCcccc------ccHHHHHHHHHCCCeEEec--CCCCHHHHHH
Confidence 4899999998543 2356888887763 478899999997644 3677888888888777774 3688888764
Q ss_pred cC------CCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeec
Q 025657 123 TG------PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVD 161 (249)
Q Consensus 123 ~~------~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD 161 (249)
.- .......+.......-..+.++..++.++..+.|+-+
T Consensus 91 ~v~kvk~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~ 135 (495)
T PTZ00314 91 EVRKVKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVD 135 (495)
T ss_pred HHhhccccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeC
Confidence 31 1101111111222333345555666788988888654
No 32
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.00 E-value=0.014 Score=52.71 Aligned_cols=84 Identities=20% Similarity=0.219 Sum_probs=53.1
Q ss_pred CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhh
Q 025657 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS 205 (249)
Q Consensus 126 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (249)
.+...||.- .+.+...+..++++++|+++|-|.+-+|....| +..+.
T Consensus 90 ~p~ivsi~g-~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~--------------------g~~~~------------ 136 (296)
T cd04740 90 TPVIASIAG-STVEEFVEVAEKLADAGADAIELNISCPNVKGG--------------------GMAFG------------ 136 (296)
T ss_pred CcEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCC--------------------ccccc------------
Confidence 456777753 345556677788888888888888776653111 00000
Q ss_pred HhhhhcCCCCCHHHHHHHHHhCCCCEEEEccCCHH------HHHHHhhCC
Q 025657 206 YVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAE------DGSKLLSKE 249 (249)
Q Consensus 206 ~~~~~~~~~~tW~dl~wlr~~~~lPivlKGIl~~e------DA~~A~~~~ 249 (249)
.++.+..+-++++|+.++.||.+| ++++ -|+.+.++|
T Consensus 137 -----~~~~~~~eiv~~vr~~~~~Pv~vK--l~~~~~~~~~~a~~~~~~G 179 (296)
T cd04740 137 -----TDPEAVAEIVKAVKKATDVPVIVK--LTPNVTDIVEIARAAEEAG 179 (296)
T ss_pred -----CCHHHHHHHHHHHHhccCCCEEEE--eCCCchhHHHHHHHHHHcC
Confidence 122345577899999999999999 4442 255666654
No 33
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=96.81 E-value=0.065 Score=49.49 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=23.9
Q ss_pred CHHHHHHHHHhCCCCEEEEccCC----HHHHHHHhhCC
Q 025657 216 NWKDVKWLQTITSLPILVKGVLT----AEDGSKLLSKE 249 (249)
Q Consensus 216 tW~dl~wlr~~~~lPivlKGIl~----~eDA~~A~~~~ 249 (249)
.++-++++|+.++.||++|=-.+ .+-|+.+.++|
T Consensus 151 ~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~G 188 (325)
T cd04739 151 YLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAG 188 (325)
T ss_pred HHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcC
Confidence 34678999999999999993222 34555666655
No 34
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=96.78 E-value=0.0053 Score=59.73 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=61.1
Q ss_pred hhcccceeccccC-CCCCCccceeec-CcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHh
Q 025657 45 AFSRILFRPRILR-DVSKIDMTTTVL-GFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS 122 (249)
Q Consensus 45 af~~~~l~pr~l~-~v~~~d~st~ll-G~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~ 122 (249)
.|+++.|+|..-. ..+++|++|.+- +..+..||+-|||... .+.|++.+- ++..|+.+ +. .+++.|+..+
T Consensus 10 t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~v----T~~ela~av-a~~GglG~-i~--~~~~~e~~~~ 81 (486)
T PRK05567 10 TFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTV----TEARMAIAM-AREGGIGV-IH--KNMSIEEQAE 81 (486)
T ss_pred CccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCc----CHHHHHHHH-HhCCCCCE-ec--CCCCHHHHHH
Confidence 4899999999554 235788888775 4667899999997753 445554444 44444444 44 2456666532
Q ss_pred c------CCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEe
Q 025657 123 T------GPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALT 159 (249)
Q Consensus 123 ~------~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvT 159 (249)
. ......-+++......-..+.++...+.++..+.|+
T Consensus 82 ~I~~vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVv 124 (486)
T PRK05567 82 EVRKVKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVV 124 (486)
T ss_pred HHHHhhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEE
Confidence 1 111111122222233334455555666777776664
No 35
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.64 E-value=0.045 Score=49.16 Aligned_cols=85 Identities=20% Similarity=0.208 Sum_probs=53.7
Q ss_pred CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhh
Q 025657 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS 205 (249)
Q Consensus 126 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (249)
.+...|+.- .+.+...+.+++++++|+.+|-|++-+|..... ++ +.
T Consensus 99 ~pvi~si~g-~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~-~~---------------~~----------------- 144 (289)
T cd02810 99 QPLIASVGG-SSKEDYVELARKIERAGAKALELNLSCPNVGGG-RQ---------------LG----------------- 144 (289)
T ss_pred CeEEEEecc-CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCC-cc---------------cc-----------------
Confidence 345677743 356667788888888899999999988763210 00 00
Q ss_pred HhhhhcCCCCCHHHHHHHHHhCCCCEEEE--ccCCH----HHHHHHhhCC
Q 025657 206 YVANQIDRSLNWKDVKWLQTITSLPILVK--GVLTA----EDGSKLLSKE 249 (249)
Q Consensus 206 ~~~~~~~~~~tW~dl~wlr~~~~lPivlK--GIl~~----eDA~~A~~~~ 249 (249)
.++...-+-++.+|+.++.||.+| +..+. +-|+.+.++|
T Consensus 145 -----~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~G 189 (289)
T cd02810 145 -----QDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAG 189 (289)
T ss_pred -----cCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 011222345788898889999999 66664 3445555544
No 36
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.55 E-value=0.048 Score=50.42 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=19.5
Q ss_pred ccceeecCcccccceeecccccc
Q 025657 63 DMTTTVLGFNISMPIMIAPTAFQ 85 (249)
Q Consensus 63 d~st~llG~~~~~Pi~iaP~g~~ 85 (249)
|++|+++|.++..||+++.-++.
T Consensus 2 ~l~~~~~Gl~l~nPv~~asg~~~ 24 (334)
T PRK07565 2 DLSTTYLGLTLRNPLVASASPLS 24 (334)
T ss_pred CceEEECCEecCCCCEecCcCCC
Confidence 68999999999999998875443
No 37
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.41 E-value=0.038 Score=51.53 Aligned_cols=81 Identities=19% Similarity=0.320 Sum_probs=60.0
Q ss_pred CCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhh
Q 025657 125 PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLA 204 (249)
Q Consensus 125 ~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (249)
+.+.-..+-+..|.+.+.++.+..++||++-|-| = | |.++.|..
T Consensus 141 ~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltV--H----G-Rtr~~kg~----------------------------- 184 (358)
T KOG2335|consen 141 NVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTV--H----G-RTREQKGL----------------------------- 184 (358)
T ss_pred CCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEE--e----c-ccHHhcCC-----------------------------
Confidence 3455666666778888888888888888776633 2 2 22333321
Q ss_pred hHhhhhcCCCCCHHHHHHHHHhCC-CCEEEEc-cCCHHHHHHHhh
Q 025657 205 SYVANQIDRSLNWKDVKWLQTITS-LPILVKG-VLTAEDGSKLLS 247 (249)
Q Consensus 205 ~~~~~~~~~~~tW~dl~wlr~~~~-lPivlKG-Il~~eDA~~A~~ 247 (249)
..++++|+.|+.||+.-+ +||++-| |++++|+.+|.+
T Consensus 185 ------~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~ 223 (358)
T KOG2335|consen 185 ------KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLK 223 (358)
T ss_pred ------CCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHH
Confidence 135789999999999988 9999987 999999999988
No 38
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=96.37 E-value=0.0091 Score=55.15 Aligned_cols=101 Identities=25% Similarity=0.287 Sum_probs=74.8
Q ss_pred CCceeEEEccccChH----HHHHHHHHHHHc---CCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCC
Q 025657 125 PGIRFFQLYVTKHRN----VDAQLVKRAERA---GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDK 197 (249)
Q Consensus 125 ~~~~wfQlY~~~d~~----~~~~li~rA~~a---G~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~ 197 (249)
.+..|++|-+..|+. ...+.+++|+.. |+..++++.|.|+..+|-.++.--..+|. . .
T Consensus 163 ~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl----~-----------~ 227 (326)
T PRK11840 163 GGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPL----G-----------A 227 (326)
T ss_pred cCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeec----c-----------c
Confidence 366799999988775 355889999998 99999999999999888887743111120 0 0
Q ss_pred CCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEE-EccCCHHHHHHHhhCC
Q 025657 198 TDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV-KGVLTAEDGSKLLSKE 249 (249)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivl-KGIl~~eDA~~A~~~~ 249 (249)
.-+++. +-.+.+.|+.+++.-+.||++ =||-+++||.+|.|.|
T Consensus 228 pIGsg~---------gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelG 271 (326)
T PRK11840 228 PIGSGL---------GIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELG 271 (326)
T ss_pred cccCCC---------CCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcC
Confidence 000000 112678899999999999998 4999999999999987
No 39
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.36 E-value=0.032 Score=51.20 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=58.7
Q ss_pred CcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCC-CC-------HHHHHhcCC--CceeEEEccccChH
Q 025657 70 GFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWAT-SS-------VEEVSSTGP--GIRFFQLYVTKHRN 139 (249)
Q Consensus 70 G~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss-~s-------leeia~~~~--~~~wfQlY~~~d~~ 139 (249)
|.++..|+++|||.... +...-+.+++.|..++.+-+-+ .+ ..++....+ .+.-.||. -.|.+
T Consensus 3 ~~~~~~~l~lAPm~~~t------~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~-g~~~~ 75 (319)
T TIGR00737 3 NIQLKSRVVLAPMAGVT------DSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLF-GSDPD 75 (319)
T ss_pred CccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEe-CCCHH
Confidence 45788999999977553 5667777788776655432211 11 222222222 45679994 46777
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 140 VDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 140 ~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
...+..++++++||.+|=|..-+|.
T Consensus 76 ~~~~aa~~~~~~G~d~IelN~gcP~ 100 (319)
T TIGR00737 76 TMAEAAKINEELGADIIDINMGCPV 100 (319)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCH
Confidence 7788889999999999988777663
No 40
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.31 E-value=0.0099 Score=58.20 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHhCC-CCEEEEccCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTITS-LPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~~-lPivlKGIl~~eDA~~A~~~~ 249 (249)
..|+.++|||+.|+ ++||.++|.++|||+.|+++|
T Consensus 275 ~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aG 310 (505)
T PLN02274 275 YQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAG 310 (505)
T ss_pred HHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcC
Confidence 46999999999995 888889999999999999987
No 41
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.05 E-value=0.1 Score=48.91 Aligned_cols=148 Identities=22% Similarity=0.317 Sum_probs=88.2
Q ss_pred hhcccceeccccC---CCCCCccceee-cCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHH
Q 025657 45 AFSRILFRPRILR---DVSKIDMTTTV-LGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEV 120 (249)
Q Consensus 45 af~~~~l~pr~l~---~v~~~d~st~l-lG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleei 120 (249)
.|+++.|+|..-. ...++|+++.+ =+.++..||+-|||--. .|..+|.+-++.|-..++-- +.++|+-
T Consensus 4 tfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtV------te~~mAiama~~Gglgvih~--~~~~e~q 75 (352)
T PF00478_consen 4 TFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTV------TESEMAIAMARLGGLGVIHR--NMSIEEQ 75 (352)
T ss_dssp -GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTT------SSHHHHHHHHHTTSEEEEES--SSCHHHH
T ss_pred ccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCcccc------chHHHHHHHHHhcCCceecC--CCCHHHH
Confidence 4999999999743 44556666445 47889999999995433 37788888888888888755 4666543
Q ss_pred Hh-------cCC-------CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCcccccc
Q 025657 121 SS-------TGP-------GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKN 186 (249)
Q Consensus 121 a~-------~~~-------~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~ 186 (249)
++ ..+ +....=..+.-. +...+.++...++|+..|+ ||+.. |.-++
T Consensus 76 ~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~-~~~~er~~~L~~agvD~iv--ID~a~-g~s~~---------------- 135 (352)
T PF00478_consen 76 AEEVKKVKRYYPNASKDEKGRLLVAAAVGTR-DDDFERAEALVEAGVDVIV--IDSAH-GHSEH---------------- 135 (352)
T ss_dssp HHHHHHHHTHHTTHHBHTTSCBCEEEEEESS-TCHHHHHHHHHHTT-SEEE--EE-SS-TTSHH----------------
T ss_pred HHHHhhhccccccccccccccceEEEEecCC-HHHHHHHHHHHHcCCCEEE--ccccC-ccHHH----------------
Confidence 21 111 111111111111 1112444444568988774 55433 11000
Q ss_pred ccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCC-CCEEEEccCCHHHHHHHhhCC
Q 025657 187 YEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITS-LPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~-lPivlKGIl~~eDA~~A~~~~ 249 (249)
--+.+++||+..+ .|||.=.|-|+|-|+..+++|
T Consensus 136 -----------------------------~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aG 170 (352)
T PF00478_consen 136 -----------------------------VIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAG 170 (352)
T ss_dssp -----------------------------HHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT
T ss_pred -----------------------------HHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcC
Confidence 0145889999987 999999999999999988876
No 42
>PRK06801 hypothetical protein; Provisional
Probab=95.95 E-value=0.2 Score=45.69 Aligned_cols=37 Identities=16% Similarity=0.343 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEcc--CCHHHHHHHhhCC
Q 025657 213 RSLNWKDVKWLQTITSLPILVKGV--LTAEDGSKLLSKE 249 (249)
Q Consensus 213 ~~~tW~dl~wlr~~~~lPivlKGI--l~~eDA~~A~~~~ 249 (249)
|.++++-|+.+++..+.|+|+=|= .+.|+..+|+++|
T Consensus 188 ~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~~G 226 (286)
T PRK06801 188 PKLDFARLAAIHQQTGLPLVLHGGSGISDADFRRAIELG 226 (286)
T ss_pred CCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcC
Confidence 569999999999999999999999 9999999999987
No 43
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=95.90 E-value=0.13 Score=48.89 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.6
Q ss_pred CCCccceeecCcccccceeeccc
Q 025657 60 SKIDMTTTVLGFNISMPIMIAPT 82 (249)
Q Consensus 60 ~~~d~st~llG~~~~~Pi~iaP~ 82 (249)
+..|++|+|+|.++..||++|.-
T Consensus 7 ~~~dLst~~~Gl~l~NP~i~ASg 29 (385)
T PLN02495 7 SEPDLSVTVNGLKMPNPFVIGSG 29 (385)
T ss_pred CCCcceEEECCEEcCCCcEeCCc
Confidence 56799999999999999999873
No 44
>PLN02826 dihydroorotate dehydrogenase
Probab=95.75 E-value=0.4 Score=45.89 Aligned_cols=87 Identities=20% Similarity=0.192 Sum_probs=53.4
Q ss_pred cchHHHHHHHHhhcccceeccccCCCCCCccceeecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEE-ecCC
Q 025657 34 EDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMT-LSSW 112 (249)
Q Consensus 34 ~de~t~~~N~~af~~~~l~pr~l~~v~~~d~st~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~-lss~ 112 (249)
+-|...+--..+++.. +.|+. ....+++++++++|.++..||++|. ++ ...+| ......++|..++ ++|.
T Consensus 46 dpE~aH~~~~~~l~~~-~~~~~-~~~~~~~L~~~~~Gl~f~NPvglAA----G~-dkn~~--~~~~l~~lGfG~vevgTV 116 (409)
T PLN02826 46 DPETAHSLAISAAARG-LVPRE-KRPDPSVLGVEVWGRTFSNPIGLAA----GF-DKNAE--AVEGLLGLGFGFVEIGSV 116 (409)
T ss_pred CHHHHHHHHHHHHHhh-ccccc-ccCCCCCcceEECCEECCCCCEECc----cc-CCCHH--HHHHHHhcCCCeEEeCCc
Confidence 6677777777777643 34422 2245678999999999999999977 32 34455 3334444565554 4444
Q ss_pred CCCCHHHHHhcCCCceeEEEc
Q 025657 113 ATSSVEEVSSTGPGIRFFQLY 133 (249)
Q Consensus 113 ss~sleeia~~~~~~~wfQlY 133 (249)
...+ ..-.|.|++|.+.
T Consensus 117 T~~p----q~GNp~PR~frl~ 133 (409)
T PLN02826 117 TPLP----QPGNPKPRVFRLR 133 (409)
T ss_pred cCCC----CCCCCCCcEEecC
Confidence 3333 1223467788775
No 45
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.66 E-value=0.41 Score=44.63 Aligned_cols=148 Identities=20% Similarity=0.206 Sum_probs=94.0
Q ss_pred hhcccceeccccC--CCCCCccceeec-----CcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCH
Q 025657 45 AFSRILFRPRILR--DVSKIDMTTTVL-----GFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSV 117 (249)
Q Consensus 45 af~~~~l~pr~l~--~v~~~d~st~ll-----G~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sl 117 (249)
.|+++.|+|+.-. .-+++|++.+|- .+.+..||+-|+|-- =+|..+|.+-++.|...++-- .+++
T Consensus 10 ~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdT------V~~~~mA~~la~~g~~~~iHk--~~~~ 81 (346)
T PRK05096 10 GFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDT------VGTFEMAKALASFDILTAVHK--HYSV 81 (346)
T ss_pred CceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCc------cccHHHHHHHHHCCCeEEEec--CCCH
Confidence 5899999998544 225789877764 344679999988543 268889999999999999854 4678
Q ss_pred HHHHh----cCCCceeEEEcc-ccChHHHHHHHHHHHH--cCCcEEEEeecCCCCCCchhhhhccCCCCCcccccccccc
Q 025657 118 EEVSS----TGPGIRFFQLYV-TKHRNVDAQLVKRAER--AGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGL 190 (249)
Q Consensus 118 eeia~----~~~~~~wfQlY~-~~d~~~~~~li~rA~~--aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~ 190 (249)
|+-++ ..+. ..-.+.+ ..-.+...+.++...+ +|+.+| +||+.. |.-+
T Consensus 82 e~~~~fv~~~~~~-~~~~~~vavG~~~~d~er~~~L~~~~~g~D~i--viD~Ah-Ghs~--------------------- 136 (346)
T PRK05096 82 EEWAAFVNNSSAD-VLKHVMVSTGTSDADFEKTKQILALSPALNFI--CIDVAN-GYSE--------------------- 136 (346)
T ss_pred HHHHHHHHhcccc-ccceEEEEecCCHHHHHHHHHHHhcCCCCCEE--EEECCC-CcHH---------------------
Confidence 87443 1111 1111111 1222222344444445 466655 667544 1100
Q ss_pred ccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhC-CCCEEEEccCCHHHHHHHhhCC
Q 025657 191 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTIT-SLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~-~lPivlKGIl~~eDA~~A~~~~ 249 (249)
.--+-|++||+.. +.+||.=.|-++|-|+..+++|
T Consensus 137 ------------------------~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aG 172 (346)
T PRK05096 137 ------------------------HFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSG 172 (346)
T ss_pred ------------------------HHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcC
Confidence 0114589999987 5888888899999999888876
No 46
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.65 E-value=0.23 Score=44.57 Aligned_cols=148 Identities=23% Similarity=0.209 Sum_probs=83.5
Q ss_pred ccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCC-------------C----HHHHHhcCCCceeEEEcccc
Q 025657 74 SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATS-------------S----VEEVSSTGPGIRFFQLYVTK 136 (249)
Q Consensus 74 ~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~-------------s----leeia~~~~~~~wfQlY~~~ 136 (249)
..||+++=.| . .++.=...|+.+.+.|+-++-=+.++. . +++|.+...-+.+..+=...
T Consensus 98 ~~pvi~si~g-~---~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 173 (289)
T cd02810 98 GQPLIASVGG-S---SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF 173 (289)
T ss_pred CCeEEEEecc-C---CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC
Confidence 4676664322 2 233224778888888876553222211 1 22333333345678876666
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCC
Q 025657 137 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 216 (249)
Q Consensus 137 d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 216 (249)
+.+.+.++++.++++|+.+|+++-=... +..+... ..|. .. . .. .+... ......+
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~~~~~~---~~~~~~~--~~~~---~~---~-------~~--~g~sg----~~~~~~~ 229 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAINTISG---RVVDLKT--VGPG---PK---R-------GT--GGLSG----APIRPLA 229 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccCc---cceeccc--Cccc---cC---C-------CC--CccCc----HHHHHHH
Confidence 7677889999999999999988632211 0011100 0010 00 0 00 00000 0011346
Q ss_pred HHHHHHHHHhC--CCCEEE-EccCCHHHHHHHhhCC
Q 025657 217 WKDVKWLQTIT--SLPILV-KGVLTAEDGSKLLSKE 249 (249)
Q Consensus 217 W~dl~wlr~~~--~lPivl-KGIl~~eDA~~A~~~~ 249 (249)
|+.++.+++.. +.||+. =||.+++||.+++++|
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~G 265 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAG 265 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcC
Confidence 88899999988 789875 5688999999999876
No 47
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=95.62 E-value=0.5 Score=43.57 Aligned_cols=170 Identities=16% Similarity=0.236 Sum_probs=98.1
Q ss_pred CcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCC-CH---HHHH--h--c--CCCceeEEEccccChH
Q 025657 70 GFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATS-SV---EEVS--S--T--GPGIRFFQLYVTKHRN 139 (249)
Q Consensus 70 G~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~-sl---eeia--~--~--~~~~~wfQlY~~~d~~ 139 (249)
+.++..|+++|||++.. +...-+.|.+.|..++.+-+-+. ++ .+.. . . .+.+.-+|| .-.|.+
T Consensus 5 ~~~~~~~~~lAPM~g~t------d~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl-~g~~~~ 77 (321)
T PRK10415 5 QYQLRNRLIAAPMAGIT------DRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI-AGSDPK 77 (321)
T ss_pred CccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEE-eCCCHH
Confidence 34677899999986553 67788888888876654432222 11 0111 1 1 123456899 456777
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCCC-----------CCch-------hhhhccCCCCCccccccccccccC--C-----
Q 025657 140 VDAQLVKRAERAGFKAIALTVDTPRL-----------GRRE-------ADIKNRFVLPPHLTLKNYEGLYIG--K----- 194 (249)
Q Consensus 140 ~~~~li~rA~~aG~~alvvTvD~p~~-----------g~Re-------~d~r~~~~~p~~~~~~~~~~~~~~--~----- 194 (249)
...+..+++++.||+.|=+..-+|+. .+.. +.+|.....|-.+..+ .+.... +
T Consensus 78 ~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR--~G~~~~~~~~~~~a 155 (321)
T PRK10415 78 EMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIR--TGWAPEHRNCVEIA 155 (321)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEE--ccccCCcchHHHHH
Confidence 77788888888999999999999962 0111 1233333333221111 110000 0
Q ss_pred --CCCCCCchh--h-hHhhhhcCCCCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhC
Q 025657 195 --MDKTDDSGL--A-SYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSK 248 (249)
Q Consensus 195 --~~~~~~~~~--~-~~~~~~~~~~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~ 248 (249)
+...+...+ . ...........+|+.++.+++..+.||+.=| |.+++||+.+++.
T Consensus 156 ~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~ 215 (321)
T PRK10415 156 QLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDY 215 (321)
T ss_pred HHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhc
Confidence 000000000 0 0001112234689999999999999999765 8899999999873
No 48
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.59 E-value=0.15 Score=47.49 Aligned_cols=97 Identities=19% Similarity=0.138 Sum_probs=62.6
Q ss_pred CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhh
Q 025657 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS 205 (249)
Q Consensus 126 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (249)
-|.+..|-+.-+.+...++.+.++++|+.+|+++=-+.. +. ++ .-+. ..+..+ ..++..
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~---~~-~~----~~~~---~~~~~g---------g~SG~~- 270 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLS---RD-GL----KGLP---NADEAG---------GLSGRP- 270 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccc---cc-cc----cccc---cCCCCC---------CcccHH-
Confidence 467888876555556789999999999999988754421 00 11 0000 000000 000000
Q ss_pred HhhhhcCCCCCHHHHHHHHHhC--CCCEE-EEccCCHHHHHHHhhCC
Q 025657 206 YVANQIDRSLNWKDVKWLQTIT--SLPIL-VKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 206 ~~~~~~~~~~tW~dl~wlr~~~--~lPiv-lKGIl~~eDA~~A~~~~ 249 (249)
.....|+.+..+++.. +.||+ +=||.++|||...+.+|
T Consensus 271 ------~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aG 311 (344)
T PRK05286 271 ------LFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAG 311 (344)
T ss_pred ------HHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcC
Confidence 0135788999999998 68998 78999999999998876
No 49
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=95.36 E-value=0.41 Score=44.20 Aligned_cols=143 Identities=22% Similarity=0.174 Sum_probs=80.9
Q ss_pred ccceeeccccccccCCChhhHHHHHHHHhcCCcEE---ecCCCCCC--------------HHHHHhcCCCceeEEEcccc
Q 025657 74 SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMT---LSSWATSS--------------VEEVSSTGPGIRFFQLYVTK 136 (249)
Q Consensus 74 ~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~---lss~ss~s--------------leeia~~~~~~~wfQlY~~~ 136 (249)
..|++++=.| . .++.-..+|+.+.++|.-++ +|.....+ ++.|.++..-|.|..|-+
T Consensus 99 ~~pvi~si~g-~---~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p-- 172 (325)
T cd04739 99 SIPVIASLNG-V---SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSP-- 172 (325)
T ss_pred CCeEEEEeCC-C---CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCC--
Confidence 5788776322 1 23333478888888875544 33211111 222333334577888854
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCC
Q 025657 137 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 216 (249)
Q Consensus 137 d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 216 (249)
+-....++.+.++++|+.+|+++==.+. ..-|+++.-..+ . .++ ++.. --+..
T Consensus 173 ~~~~~~~~a~~l~~~Gadgi~~~nt~~~---~~id~~~~~~~~-----~--~gl----------SG~~-------~~~~a 225 (325)
T cd04739 173 FFSALAHMAKQLDAAGADGLVLFNRFYQ---PDIDLETLEVVP-----N--LLL----------SSPA-------EIRLP 225 (325)
T ss_pred CccCHHHHHHHHHHcCCCeEEEEcCcCC---CCccccccceec-----C--CCc----------CCcc-------chhHH
Confidence 3335678889999999999987432211 001111100000 0 000 0000 01345
Q ss_pred HHHHHHHHHhCCCCEE-EEccCCHHHHHHHhhCC
Q 025657 217 WKDVKWLQTITSLPIL-VKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 217 W~dl~wlr~~~~lPiv-lKGIl~~eDA~~A~~~~ 249 (249)
|+-+..+++..+.||+ +=||.+++||.+.+.+|
T Consensus 226 l~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aG 259 (325)
T cd04739 226 LRWIAILSGRVKASLAASGGVHDAEDVVKYLLAG 259 (325)
T ss_pred HHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcC
Confidence 7778888888999999 56699999999998876
No 50
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=95.35 E-value=0.27 Score=40.08 Aligned_cols=158 Identities=13% Similarity=0.081 Sum_probs=80.1
Q ss_pred hhHHHHHHHHhcCCcEE-ecCCCCC-----C-----HHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEee
Q 025657 92 GECATARAASAAGTIMT-LSSWATS-----S-----VEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTV 160 (249)
Q Consensus 92 gE~~~AraA~~~gi~~~-lss~ss~-----s-----leeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTv 160 (249)
.....++.+.+.|+-++ +.+.... . ++++......+...|+|.....+......++++++|+..|.|..
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~ 92 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHG 92 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEec
Confidence 34578888888876543 2221111 1 44444444467789998776665554446789999999999988
Q ss_pred cCCCC----CCchhhhhccC-CCCCccccccccccccCCCCCCCCchh--hhHhhhhcCCCCCH---HHHHHHHHhCCCC
Q 025657 161 DTPRL----GRREADIKNRF-VLPPHLTLKNYEGLYIGKMDKTDDSGL--ASYVANQIDRSLNW---KDVKWLQTITSLP 230 (249)
Q Consensus 161 D~p~~----g~Re~d~r~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~tW---~dl~wlr~~~~lP 230 (249)
..+.. -.--+.+|..+ .+|...............+...+...+ .............+ ..++.++...+.|
T Consensus 93 ~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 172 (200)
T cd04722 93 AVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVP 172 (200)
T ss_pred cCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCC
Confidence 87531 11123444433 122111111000000000000000000 00000000011111 2355666778999
Q ss_pred EEEEc-cCCHHHHHHHhhCC
Q 025657 231 ILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 231 ivlKG-Il~~eDA~~A~~~~ 249 (249)
|++=| |.+++++.+++++|
T Consensus 173 i~~~GGi~~~~~~~~~~~~G 192 (200)
T cd04722 173 VIAGGGINDPEDAAEALALG 192 (200)
T ss_pred EEEECCCCCHHHHHHHHHhC
Confidence 99887 77779999998875
No 51
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=95.24 E-value=0.11 Score=48.09 Aligned_cols=138 Identities=19% Similarity=0.241 Sum_probs=83.6
Q ss_pred CChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCc
Q 025657 89 HPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRR 168 (249)
Q Consensus 89 h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~R 168 (249)
.|+.-...|+-+.+.| .-.+=-...||...|.+.+.|..+ .+|++++.++++..+++.- -+-|||=.
T Consensus 77 dp~~l~eaA~~~~~~g-~~~IdlN~GCP~~~V~~~g~Ga~L-----l~~p~lv~~iv~a~~~av~-~iPVTVKi------ 143 (323)
T COG0042 77 DPELLAEAAKIAEELG-ADIIDLNCGCPSPKVVKGGAGAAL-----LKNPELLAEIVKAMVEAVG-DIPVTVKI------ 143 (323)
T ss_pred CHHHHHHHHHHHHhcC-CCEEeeeCCCChHHhcCCCcchhh-----cCCHHHHHHHHHHHHHhhC-CCCeEEEE------
Confidence 3555568888888888 444444667899999876555443 3688999999988887653 45556653
Q ss_pred hhhhhccCCCCCccccccccccccCCCCCCCCchh---hhHhhhhcCCCCCHHHHHHHHHhCC-CCEEEEc-cCCHHHHH
Q 025657 169 EADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGL---ASYVANQIDRSLNWKDVKWLQTITS-LPILVKG-VLTAEDGS 243 (249)
Q Consensus 169 e~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~tW~dl~wlr~~~~-lPivlKG-Il~~eDA~ 243 (249)
|.|+.-+. .....+.... ...+...+ +.........+.+|+.|+.+|+..+ .||+.=| |.+++||+
T Consensus 144 ----RlG~d~~~-~~~~~ia~~~----~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~ 214 (323)
T COG0042 144 ----RLGWDDDD-ILALEIARIL----EDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAK 214 (323)
T ss_pred ----ecccCccc-ccHHHHHHHH----HhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHH
Confidence 33332211 0000000000 00000000 0000111234589999999999999 9999998 69999999
Q ss_pred HHhhC
Q 025657 244 KLLSK 248 (249)
Q Consensus 244 ~A~~~ 248 (249)
..+++
T Consensus 215 ~~l~~ 219 (323)
T COG0042 215 EMLEY 219 (323)
T ss_pred HHHHh
Confidence 99885
No 52
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.00 E-value=0.36 Score=43.96 Aligned_cols=37 Identities=11% Similarity=0.243 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEccC--CHHHHHHHhhCC
Q 025657 213 RSLNWKDVKWLQTITSLPILVKGVL--TAEDGSKLLSKE 249 (249)
Q Consensus 213 ~~~tW~dl~wlr~~~~lPivlKGIl--~~eDA~~A~~~~ 249 (249)
|.++|+-|+.|++..+.|||+-|-. ..||.++|+++|
T Consensus 184 p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~G 222 (283)
T PRK07998 184 PRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYK 222 (283)
T ss_pred CCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcC
Confidence 7899999999999999999999975 457888888877
No 53
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=95.00 E-value=0.63 Score=42.97 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=44.8
Q ss_pred chHHHHHHHHhhcccceecccc-CCCCCCccceeecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEe
Q 025657 35 DQWTLQENRNAFSRILFRPRIL-RDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL 109 (249)
Q Consensus 35 de~t~~~N~~af~~~~l~pr~l-~~v~~~d~st~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~l 109 (249)
-|.+.+-...+++-+...|=.+ +...++|++|+++|.++..||++|. | + ..++|. .+...+.|..+++
T Consensus 9 ~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~l~nPi~~As-G---~-~~~~~~--~~~~~~~G~Gavv 77 (327)
T cd04738 9 PETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAA-G---F-DKNAEA--IDALLALGFGFVE 77 (327)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCCCcceEECCEECCCCCEeCc-C---C-CCCHHH--HHHHHHCCCcEEE
Confidence 4667777777777766666332 3467789999999999999998865 3 2 233432 3333366766654
No 54
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=94.92 E-value=0.11 Score=49.44 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=60.5
Q ss_pred CCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhh
Q 025657 125 PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLA 204 (249)
Q Consensus 125 ~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (249)
.-|.|..|-+ +-....++.+.++++|+.+|+++ ++-. +.-.-|+++.-..| .+..++ ...++
T Consensus 168 ~~Pv~vKl~p--~~~~~~~~a~~~~~~Gadgi~~~-Nt~~-~~~~id~~~~~~~p-~~~~~~------------~~gg~- 229 (420)
T PRK08318 168 RLPVIVKLTP--NITDIREPARAAKRGGADAVSLI-NTIN-SITGVDLDRMIPMP-IVNGKS------------SHGGY- 229 (420)
T ss_pred CCcEEEEcCC--CcccHHHHHHHHHHCCCCEEEEe-cccC-ccccccccccCCCc-eecCCC------------Ccccc-
Confidence 3578999864 33346789999999999998864 2211 11101111100001 000000 00000
Q ss_pred hHhhhhcCCCCCHHHHHHHHHhC---CCCEE-EEccCCHHHHHHHhhCC
Q 025657 205 SYVANQIDRSLNWKDVKWLQTIT---SLPIL-VKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 205 ~~~~~~~~~~~tW~dl~wlr~~~---~lPiv-lKGIl~~eDA~~A~~~~ 249 (249)
...-..+++|+-|..+++.. +.||| .=||.+++||...+.+|
T Consensus 230 ---SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aG 275 (420)
T PRK08318 230 ---CGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLG 275 (420)
T ss_pred ---cchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhC
Confidence 00001245899999999987 78999 66799999999998876
No 55
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.73 E-value=1.1 Score=41.76 Aligned_cols=67 Identities=21% Similarity=0.262 Sum_probs=41.4
Q ss_pred chHHHHHHHHhhcccc---ee---ccccCCCCCCccceeecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEE
Q 025657 35 DQWTLQENRNAFSRIL---FR---PRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMT 108 (249)
Q Consensus 35 de~t~~~N~~af~~~~---l~---pr~l~~v~~~d~st~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~ 108 (249)
-|.+.+--..+.+.+. +. .+.+ ...+++++|+++|.++..||++|. |.. ..+| ..+...+.|..++
T Consensus 15 ~e~~h~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~~~~Gl~l~nPi~~As-G~~----~~~~--~~~~~~~~G~Gav 86 (344)
T PRK05286 15 PETAHELTIRALKRASRTPLLSLLRQRL-TYTDPRLPVTVMGLTFPNPVGLAA-GFD----KNGE--AIDALGALGFGFV 86 (344)
T ss_pred HHHHHHHHHHHHHHhccCCchhhhhhcc-CCCCCCCceEECCEECCCCCEECC-CCC----CChH--HHHHHHHcCCCEE
Confidence 3555555555555444 22 2222 235778999999999999998865 322 3343 4455777777766
Q ss_pred e
Q 025657 109 L 109 (249)
Q Consensus 109 l 109 (249)
+
T Consensus 87 v 87 (344)
T PRK05286 87 E 87 (344)
T ss_pred E
Confidence 4
No 56
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=94.71 E-value=0.12 Score=45.86 Aligned_cols=100 Identities=22% Similarity=0.344 Sum_probs=60.2
Q ss_pred CceeEEEccccChHH----HHHHHHHHH---HcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCC
Q 025657 126 GIRFFQLYVTKHRNV----DAQLVKRAE---RAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKT 198 (249)
Q Consensus 126 ~~~wfQlY~~~d~~~----~~~li~rA~---~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~ 198 (249)
+..|++|-+..|... ..++++-|| +-||..+-.+-|-|+.-+|-.|.--...+|..-. . .
T Consensus 90 ~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMPlgsP--------I-----G 156 (247)
T PF05690_consen 90 GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSP--------I-----G 156 (247)
T ss_dssp S-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSS--------T-----T
T ss_pred CCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEEecccc--------c-----c
Confidence 567888877666542 235555555 5699999999999988887776544333331000 0 0
Q ss_pred CCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 199 DDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 199 ~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
.+. .-.+..-|+-|+++.+.||||- ||-+|.||.+|.|.|
T Consensus 157 Sg~-----------Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG 197 (247)
T PF05690_consen 157 SGR-----------GIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELG 197 (247)
T ss_dssp T--------------SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT
T ss_pred cCc-----------CCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcC
Confidence 011 1245577999999999999996 899999999999977
No 57
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=94.63 E-value=0.33 Score=42.91 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHhCC-CCEEEE-ccCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTITS-LPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~~-lPivlK-GIl~~eDA~~A~~~~ 249 (249)
.+|+.|+.+++..+ .|||-= ||.++|||++.+++|
T Consensus 177 a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~G 213 (231)
T TIGR00736 177 ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAG 213 (231)
T ss_pred hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhC
Confidence 57999999999985 898865 599999999998876
No 58
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.61 E-value=0.89 Score=42.02 Aligned_cols=144 Identities=21% Similarity=0.134 Sum_probs=79.8
Q ss_pred cccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCC---------CC----H----HHHHhcCCCceeEEEccc
Q 025657 73 ISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWAT---------SS----V----EEVSSTGPGIRFFQLYVT 135 (249)
Q Consensus 73 ~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss---------~s----l----eeia~~~~~~~wfQlY~~ 135 (249)
+..|++++=.+. .++.-..+|+.+.++|.-++-=+.+. .. + ++|.+...-|.|..+..
T Consensus 100 ~~~pvi~sI~g~----~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p- 174 (334)
T PRK07565 100 VDIPVIASLNGS----SAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSP- 174 (334)
T ss_pred cCCcEEEEeccC----CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCC-
Confidence 356776654331 23333478888888775443111111 11 2 33333334567887754
Q ss_pred cChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCC
Q 025657 136 KHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL 215 (249)
Q Consensus 136 ~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (249)
+-....++.+.++++|+++|+++--... ..-|.+..-..+ . .++ ++.. --+.
T Consensus 175 -~~~~~~~~a~~l~~~G~dgI~~~n~~~~---~~~d~~~~~~~~-----~--~gl----------sg~~-------~~~~ 226 (334)
T PRK07565 175 -YFSNLANMAKRLDAAGADGLVLFNRFYQ---PDIDLETLEVVP-----G--LVL----------STPA-------ELRL 226 (334)
T ss_pred -CchhHHHHHHHHHHcCCCeEEEECCcCC---CCcChhhccccc-----C--CCC----------CCch-------hhhH
Confidence 3334678888999999999987522110 111111100000 0 000 0000 0134
Q ss_pred CHHHHHHHHHhCCCCEE-EEccCCHHHHHHHhhCC
Q 025657 216 NWKDVKWLQTITSLPIL-VKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 216 tW~dl~wlr~~~~lPiv-lKGIl~~eDA~~A~~~~ 249 (249)
.|+-+..+++..+.||+ .=||.+++||.+++.+|
T Consensus 227 al~~v~~~~~~~~ipIig~GGI~s~~Da~e~l~aG 261 (334)
T PRK07565 227 PLRWIAILSGRVGADLAATTGVHDAEDVIKMLLAG 261 (334)
T ss_pred HHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHcC
Confidence 56778888888899999 55699999999998876
No 59
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=94.61 E-value=0.22 Score=45.61 Aligned_cols=36 Identities=17% Similarity=0.624 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhC
Q 025657 213 RSLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSK 248 (249)
Q Consensus 213 ~~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~ 248 (249)
...+|+.++++++..+.||+.=| |.+++||.+..+.
T Consensus 168 ~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~ 204 (309)
T PF01207_consen 168 GPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQ 204 (309)
T ss_dssp S---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCC
T ss_pred cccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHh
Confidence 36799999999999999999987 9999999998764
No 60
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=94.51 E-value=0.23 Score=45.80 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=61.1
Q ss_pred CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhh
Q 025657 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS 205 (249)
Q Consensus 126 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (249)
-|.|.+|-+.-+.+...++.+.++++|+.+|+++--+.. .+. ..-|. ..+.. + +..
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~-----~~~---~~~~~---~~~~~----------g--G~s- 258 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTIS-----RPG---LLRSP---LANET----------G--GLS- 258 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCccc-----ccc---ccccc---ccCCC----------C--ccC-
Confidence 468899965555556779999999999999987743211 000 00010 00000 0 000
Q ss_pred HhhhhcCCCCCHHHHHHHHHhC--CCCEE-EEccCCHHHHHHHhhCC
Q 025657 206 YVANQIDRSLNWKDVKWLQTIT--SLPIL-VKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 206 ~~~~~~~~~~tW~dl~wlr~~~--~lPiv-lKGIl~~eDA~~A~~~~ 249 (249)
.......+|+.+..+++.. +.||+ +=||.+++||.+.+.+|
T Consensus 259 ---G~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aG 302 (327)
T cd04738 259 ---GAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAG 302 (327)
T ss_pred ---ChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcC
Confidence 0001135689999999998 68988 56799999999998876
No 61
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=94.41 E-value=0.11 Score=46.51 Aligned_cols=100 Identities=21% Similarity=0.329 Sum_probs=69.1
Q ss_pred CceeEEEccccChHH----HHHHHHHHH---HcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCC
Q 025657 126 GIRFFQLYVTKHRNV----DAQLVKRAE---RAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKT 198 (249)
Q Consensus 126 ~~~wfQlY~~~d~~~----~~~li~rA~---~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~ 198 (249)
+..|++|-+..|... ..++++-|| +-||..+-.|-|-|+..+|-.|.--...+|..-. .+
T Consensus 104 ~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsP--------IG----- 170 (267)
T CHL00162 104 DNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDIGCATVMPLGSP--------IG----- 170 (267)
T ss_pred CCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHcCCeEEeeccCc--------cc-----
Confidence 456888877665432 235555554 5799999999999998888777654444441100 00
Q ss_pred CCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 199 DDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 199 ~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
.+. .-.+...|+-|+++.+.||++= ||-+++||.+|+|.|
T Consensus 171 Sg~-----------Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElG 211 (267)
T CHL00162 171 SGQ-----------GLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELG 211 (267)
T ss_pred CCC-----------CCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcC
Confidence 000 1246678999999999999884 999999999999977
No 62
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.36 E-value=0.42 Score=43.12 Aligned_cols=147 Identities=22% Similarity=0.272 Sum_probs=81.6
Q ss_pred cccceeeccccccccCCChhhHHHHHHHHhcCCcEE-e--cCCCC--------CC-------HHHHHhcCCCceeEEEcc
Q 025657 73 ISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMT-L--SSWAT--------SS-------VEEVSSTGPGIRFFQLYV 134 (249)
Q Consensus 73 ~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~-l--ss~ss--------~s-------leeia~~~~~~~wfQlY~ 134 (249)
...|++++=.|. .++.=...|+.+.++|.-++ | |+-.+ .+ ++.|.+...-+.+.++-+
T Consensus 88 ~~~p~ivsi~g~----~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~ 163 (296)
T cd04740 88 FGTPVIASIAGS----TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP 163 (296)
T ss_pred CCCcEEEEEecC----CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 356777654332 23333477888888876554 2 21100 11 222233333467888743
Q ss_pred ccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCC
Q 025657 135 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 214 (249)
Q Consensus 135 ~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (249)
+.+...+++++++++|+.+|.++ ++-. |. .-|.++.- |. + .. ..+ + .......+
T Consensus 164 --~~~~~~~~a~~~~~~G~d~i~~~-nt~~-g~-~~~~~~~~--~~-~--~~----~~g--------g----~sg~~~~~ 217 (296)
T cd04740 164 --NVTDIVEIARAAEEAGADGLTLI-NTLK-GM-AIDIETRK--PI-L--GN----VTG--------G----LSGPAIKP 217 (296)
T ss_pred --CchhHHHHHHHHHHcCCCEEEEE-CCCc-cc-ccccccCc--ee-e--cC----Ccc--------e----ecCcccch
Confidence 44457788999999999998652 2111 11 11111110 10 0 00 000 0 00011124
Q ss_pred CCHHHHHHHHHhCCCCEEE-EccCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTITSLPILV-KGVLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~~lPivl-KGIl~~eDA~~A~~~~ 249 (249)
..|+.++.+++..+.||+. =||.+++||.++++.|
T Consensus 218 ~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~G 253 (296)
T cd04740 218 IALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAG 253 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC
Confidence 5788899999999999987 5688999999999876
No 63
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=94.33 E-value=0.36 Score=43.95 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=59.8
Q ss_pred CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhh
Q 025657 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS 205 (249)
Q Consensus 126 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (249)
-|.|..|-. |-....++++.++++|+++|+++==.+ +.-..|+...-..+ .+..++..+ +
T Consensus 169 ~Pv~vKl~~--~~~~~~~~a~~~~~~Gadgi~~~Nt~~--~~~~id~~~~~~~~-~~~~~~~~g------------g--- 228 (299)
T cd02940 169 IPVIAKLTP--NITDIREIARAAKEGGADGVSAINTVN--SLMGVDLDGTPPAP-GVEGKTTYG------------G--- 228 (299)
T ss_pred CCeEEECCC--CchhHHHHHHHHHHcCCCEEEEecccc--cccccccccCCccc-cccCCCCcC------------c---
Confidence 467888753 445677999999999999988531110 00001111100000 000000000 0
Q ss_pred HhhhhcCCCCCHHHHHHHHHhC--CCCEEE-EccCCHHHHHHHhhCC
Q 025657 206 YVANQIDRSLNWKDVKWLQTIT--SLPILV-KGVLTAEDGSKLLSKE 249 (249)
Q Consensus 206 ~~~~~~~~~~tW~dl~wlr~~~--~lPivl-KGIl~~eDA~~A~~~~ 249 (249)
.......+++|+-|..+++.. +.||+- =||.++|||.+++.+|
T Consensus 229 -~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aG 274 (299)
T cd02940 229 -YSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLG 274 (299)
T ss_pred -ccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcC
Confidence 000112356799999999999 889875 4799999999999876
No 64
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=94.31 E-value=0.46 Score=43.06 Aligned_cols=147 Identities=24% Similarity=0.266 Sum_probs=81.1
Q ss_pred cccceeeccccccccCCChhhHHHHHHHHhcC-CcEE-e--cC----C-C---CCC---HHHH----HhcCCCceeEEEc
Q 025657 73 ISMPIMIAPTAFQKMAHPEGECATARAASAAG-TIMT-L--SS----W-A---TSS---VEEV----SSTGPGIRFFQLY 133 (249)
Q Consensus 73 ~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~g-i~~~-l--ss----~-s---s~s---leei----a~~~~~~~wfQlY 133 (249)
+..|++++=.|. .++.=...|+-++++| .-.+ + |. . + ... +.|| .++..-+.+..+-
T Consensus 90 ~~~p~i~si~g~----~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 90 FDTPIIANVAGS----TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred cCCcEEEEeccC----CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 467877755432 2443347777778887 4333 2 11 0 0 011 2233 3333345677774
Q ss_pred cccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCC
Q 025657 134 VTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDR 213 (249)
Q Consensus 134 ~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (249)
. +-+...++.++++++|+.+|.++ .+ ..|.+ -|.+... | .+ .. ..+ + .......
T Consensus 166 ~--~~~~~~~~a~~l~~~G~d~i~~~-nt-~~g~~-~~~~~~~--~-~~--~~----~~g--------g----~sg~~~~ 219 (301)
T PRK07259 166 P--NVTDIVEIAKAAEEAGADGLSLI-NT-LKGMA-IDIKTRK--P-IL--AN----VTG--------G----LSGPAIK 219 (301)
T ss_pred C--CchhHHHHHHHHHHcCCCEEEEE-cc-ccccc-cccccCc--e-ee--cC----CcC--------c----cCCcCcc
Confidence 3 44466788899999999998663 11 11211 1111111 0 00 00 000 0 0000112
Q ss_pred CCCHHHHHHHHHhCCCCEE-EEccCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITSLPIL-VKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPiv-lKGIl~~eDA~~A~~~~ 249 (249)
+..|+.++.+++..+.||+ +=||.+++||.+++.+|
T Consensus 220 p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aG 256 (301)
T PRK07259 220 PIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAG 256 (301)
T ss_pred cccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcC
Confidence 4578899999999999998 67899999999999876
No 65
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=94.28 E-value=0.89 Score=41.41 Aligned_cols=149 Identities=15% Similarity=0.186 Sum_probs=83.1
Q ss_pred HHHHHHHHhcCCcEEecCCCC----CCHHHH-------HhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecC
Q 025657 94 CATARAASAAGTIMTLSSWAT----SSVEEV-------SSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDT 162 (249)
Q Consensus 94 ~~~AraA~~~gi~~~lss~ss----~sleei-------a~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~ 162 (249)
.++.+||++.+.|.++...-+ ..++.+ ++...-|..++| |.....+.+.+|-++||..+++ |.
T Consensus 30 ~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHL----DHg~~~e~i~~ai~~GFtSVM~--Dg 103 (282)
T TIGR01858 30 QAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHL----DHHESLDDIRQKVHAGVRSAMI--DG 103 (282)
T ss_pred HHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCEEee--cC
Confidence 488899999999998865322 244443 222345667777 8888888999999999998765 45
Q ss_pred CCCCCchhhhhc---------cCCCCCccccccccccccC-C-CC-C---CCCchhhhHhhh----------------h-
Q 025657 163 PRLGRREADIKN---------RFVLPPHLTLKNYEGLYIG-K-MD-K---TDDSGLASYVAN----------------Q- 210 (249)
Q Consensus 163 p~~g~Re~d~r~---------~~~~p~~~~~~~~~~~~~~-~-~~-~---~~~~~~~~~~~~----------------~- 210 (249)
......| +++. .+.++-.--+..+.+.+-+ . .. . .+......++.. .
T Consensus 104 S~lp~ee-Ni~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk 182 (282)
T TIGR01858 104 SHFPFAQ-NVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYK 182 (282)
T ss_pred CCCCHHH-HHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcC
Confidence 4443322 2211 0000000000000000000 0 00 0 000011111110 1
Q ss_pred cCCCCCHHHHHHHHHhCCCCEEEEccC--CHHHHHHHhhCC
Q 025657 211 IDRSLNWKDVKWLQTITSLPILVKGVL--TAEDGSKLLSKE 249 (249)
Q Consensus 211 ~~~~~tW~dl~wlr~~~~lPivlKGIl--~~eDA~~A~~~~ 249 (249)
..|.++|+-|+.|++.++.|+|+=|=. ..|+-++|+++|
T Consensus 183 ~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~G 223 (282)
T TIGR01858 183 KTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELG 223 (282)
T ss_pred CCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcC
Confidence 137899999999999999999999864 357777788776
No 66
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=94.27 E-value=1 Score=40.87 Aligned_cols=147 Identities=14% Similarity=0.190 Sum_probs=86.5
Q ss_pred HHHHHHHhcCCcEEecCCCCCCHHHHHhcC-CCceeEEEcccc-----ChHHHHHHHHHHHHcCCcEEEEeecCCCCCCc
Q 025657 95 ATARAASAAGTIMTLSSWATSSVEEVSSTG-PGIRFFQLYVTK-----HRNVDAQLVKRAERAGFKAIALTVDTPRLGRR 168 (249)
Q Consensus 95 ~~AraA~~~gi~~~lss~ss~sleeia~~~-~~~~wfQlY~~~-----d~~~~~~li~rA~~aG~~alvvTvD~p~~g~R 168 (249)
.+..+|++..+|++|---=..++|.+.++- .|..++|+=-.. +-+.++++.+.|++.|.. |-.|.-..|.-
T Consensus 65 ~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~---veaE~ghlG~~ 141 (281)
T PRK06806 65 LMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGAT---VEAEIGRVGGS 141 (281)
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCe---EEEEeeeECCc
Confidence 445577788999998765556888887543 367788883321 234677888888888876 35555555544
Q ss_pred hhhhhccCCCCCcccccccccc-ccCCCCCCCCchh--hhHhh-hhcCCCCCHHHHHHHHHhCCCCEEEEc--cCCHHHH
Q 025657 169 EADIKNRFVLPPHLTLKNYEGL-YIGKMDKTDDSGL--ASYVA-NQIDRSLNWKDVKWLQTITSLPILVKG--VLTAEDG 242 (249)
Q Consensus 169 e~d~r~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~-~~~~~~~tW~dl~wlr~~~~lPivlKG--Il~~eDA 242 (249)
+.+... . +.+..+.... .+......+..++ +.... ..-.|.++++.|++|++..+.|+|+=| =.++|+.
T Consensus 142 d~~~~~---~--g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~ 216 (281)
T PRK06806 142 EDGSED---I--EMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDF 216 (281)
T ss_pred cCCccc---c--cceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHH
Confidence 322110 0 1111111000 0000000000000 00000 012468999999999999999999999 8899999
Q ss_pred HHHhhCC
Q 025657 243 SKLLSKE 249 (249)
Q Consensus 243 ~~A~~~~ 249 (249)
.+++++|
T Consensus 217 ~~~i~~G 223 (281)
T PRK06806 217 KKCIQHG 223 (281)
T ss_pred HHHHHcC
Confidence 9999887
No 67
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=94.16 E-value=0.33 Score=43.33 Aligned_cols=145 Identities=10% Similarity=0.072 Sum_probs=74.8
Q ss_pred HHHHHHHhcCCcEEecCCCCCCHHHHHhcCC-Ccee--EEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCC-Cchh
Q 025657 95 ATARAASAAGTIMTLSSWATSSVEEVSSTGP-GIRF--FQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLG-RREA 170 (249)
Q Consensus 95 ~~AraA~~~gi~~~lss~ss~sleeia~~~~-~~~w--fQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g-~Re~ 170 (249)
.+.+.+++.++|+++|. .-.++|++.+... +... +=-....+.+...+++++. |-..+++.+|..... .|.+
T Consensus 65 ~i~~i~~~~~~pv~~gG-Gi~s~~d~~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~---~~~~i~vsiD~k~g~~~~~~ 140 (258)
T PRK01033 65 LIENLASECFMPLCYGG-GIKTLEQAKKIFSLGVEKVSINTAALEDPDLITEAAERF---GSQSVVVSIDVKKNLGGKFD 140 (258)
T ss_pred HHHHHHHhCCCCEEECC-CCCCHHHHHHHHHCCCCEEEEChHHhcCHHHHHHHHHHh---CCCcEEEEEEEecCCCCcEE
Confidence 56666777889998886 5678898865321 2222 2222345666666665554 544689999974310 0000
Q ss_pred -hhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHh
Q 025657 171 -DIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLL 246 (249)
Q Consensus 171 -d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~ 246 (249)
-.++... .....+..+... +... ....--+............+|+-++.+++.++.||+.=| |.++||...+.
T Consensus 141 v~~~gw~~-~~~~~~~e~~~~-~~~~-g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~ 215 (258)
T PRK01033 141 VYTHNGTK-KLKKDPLELAKE-YEAL-GAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAI 215 (258)
T ss_pred EEEcCCee-cCCCCHHHHHHH-HHHc-CCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHH
Confidence 0010000 000000000000 0000 000000000000001123589999999999999999998 99999999987
No 68
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=94.11 E-value=0.67 Score=44.12 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=18.4
Q ss_pred CccceeecCcccccceeecc
Q 025657 62 IDMTTTVLGFNISMPIMIAP 81 (249)
Q Consensus 62 ~d~st~llG~~~~~Pi~iaP 81 (249)
.|++|+++|.++..||++|.
T Consensus 2 ~~L~~~~~Gl~l~nPv~~aa 21 (420)
T PRK08318 2 ADLSITFCGIKSPNPFWLAS 21 (420)
T ss_pred CCceEEECCEecCCCcEeCC
Confidence 37899999999999999986
No 69
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.96 E-value=0.14 Score=50.29 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=30.3
Q ss_pred HHHHHHHHhCCCCEEEEc--cCCHHHHHHHhhCC
Q 025657 218 KDVKWLQTITSLPILVKG--VLTAEDGSKLLSKE 249 (249)
Q Consensus 218 ~dl~wlr~~~~lPivlKG--Il~~eDA~~A~~~~ 249 (249)
+.|+|||+.|+.++.|++ |+++|||+.++++|
T Consensus 272 ~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aG 305 (502)
T PRK07107 272 RTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAG 305 (502)
T ss_pred HHHHHHHHhCCCCceEEeccccCHHHHHHHHHcC
Confidence 679999999999999999 99999999999987
No 70
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=93.92 E-value=0.95 Score=41.30 Aligned_cols=149 Identities=15% Similarity=0.169 Sum_probs=84.2
Q ss_pred HHHHHHHHhcCCcEEecCCCC----CCHHHH-------HhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecC
Q 025657 94 CATARAASAAGTIMTLSSWAT----SSVEEV-------SSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDT 162 (249)
Q Consensus 94 ~~~AraA~~~gi~~~lss~ss----~sleei-------a~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~ 162 (249)
.++.+||++.+.|.+|...-. ..++.+ ++...-|..++| |.....+.+.+|-++||..+++ |.
T Consensus 32 ~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHL----DHg~~~e~i~~ai~~GFtSVM~--Dg 105 (286)
T PRK12738 32 QAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHL----DHHESLDDIRRKVHAGVRSAMI--DG 105 (286)
T ss_pred HHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCeEee--cC
Confidence 488999999999999864221 244443 222345667777 8888889999999999999865 55
Q ss_pred CCCCCchhhhhc---------cCCCCCccccccccccccC-CCCC----C-CCchhhhHhhh----------------h-
Q 025657 163 PRLGRREADIKN---------RFVLPPHLTLKNYEGLYIG-KMDK----T-DDSGLASYVAN----------------Q- 210 (249)
Q Consensus 163 p~~g~Re~d~r~---------~~~~p~~~~~~~~~~~~~~-~~~~----~-~~~~~~~~~~~----------------~- 210 (249)
......| +++. .+.++-.--+..+.+..-+ .... . ++.....+... .
T Consensus 106 S~lp~ee-Ni~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~ 184 (286)
T PRK12738 106 SHFPFAE-NVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYS 184 (286)
T ss_pred CCCCHHH-HHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCC
Confidence 4443322 1111 0000000000000000000 0000 0 00011111110 1
Q ss_pred cCCCCCHHHHHHHHHhCCCCEEEEccC--CHHHHHHHhhCC
Q 025657 211 IDRSLNWKDVKWLQTITSLPILVKGVL--TAEDGSKLLSKE 249 (249)
Q Consensus 211 ~~~~~tW~dl~wlr~~~~lPivlKGIl--~~eDA~~A~~~~ 249 (249)
..|.++|+-|+.|++.++.|+|+=|=. ..||-++|++.|
T Consensus 185 ~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~G 225 (286)
T PRK12738 185 KTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELG 225 (286)
T ss_pred CCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcC
Confidence 247899999999999999999999864 367788888876
No 71
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=93.78 E-value=0.9 Score=41.68 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=27.3
Q ss_pred ccceeecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEe
Q 025657 63 DMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL 109 (249)
Q Consensus 63 d~st~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~l 109 (249)
|++|+++|.++.-||++|.-... ..+|. .+...+.|..+++
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG~~~----~~~e~--~~~~~~~g~Gavv 41 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAGVYC----MTKEE--LEEVEASAAGAFV 41 (310)
T ss_pred CCceEECCEECCCCCEeCCCCCC----CCHHH--HHHHHHcCCcEEE
Confidence 67999999999999999872221 22333 3336666666553
No 72
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=93.65 E-value=0.87 Score=41.93 Aligned_cols=35 Identities=11% Similarity=0.467 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhC
Q 025657 214 SLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSK 248 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~ 248 (249)
..+|+.++.+++..+.||+.=| |.+++||..+++.
T Consensus 180 ~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~ 215 (312)
T PRK10550 180 HINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAI 215 (312)
T ss_pred cccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhc
Confidence 4689999999999999999876 8899999998853
No 73
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=93.58 E-value=0.42 Score=43.23 Aligned_cols=99 Identities=26% Similarity=0.318 Sum_probs=57.8
Q ss_pred CCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhh
Q 025657 125 PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLA 204 (249)
Q Consensus 125 ~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (249)
.-+.+..+- .+.+...++.++++++|+++|.|+-= ..|. .-|++.+. |. + ....+ +..
T Consensus 157 ~~pv~vKi~--~~~~~~~~~a~~l~~~G~d~i~v~nt--~~~~-~~~~~~~~--~~-~--~~~~g------------g~s 214 (300)
T TIGR01037 157 DVPVFAKLS--PNVTDITEIAKAAEEAGADGLTLINT--LRGM-KIDIKTGK--PI-L--ANKTG------------GLS 214 (300)
T ss_pred CCCEEEECC--CChhhHHHHHHHHHHcCCCEEEEEcc--CCcc-ccccccCc--ee-e--CCCCc------------ccc
Confidence 346677763 34456778999999999999877421 1111 11222111 10 0 00000 000
Q ss_pred hHhhhhcCCCCCHHHHHHHHHhCCCCEE-EEccCCHHHHHHHhhCC
Q 025657 205 SYVANQIDRSLNWKDVKWLQTITSLPIL-VKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 205 ~~~~~~~~~~~tW~dl~wlr~~~~lPiv-lKGIl~~eDA~~A~~~~ 249 (249)
. ....+++++.+..+++..+.||+ .=||.+++||.++++.|
T Consensus 215 ---g-~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~G 256 (300)
T TIGR01037 215 ---G-PAIKPIALRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAG 256 (300)
T ss_pred ---c-hhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcC
Confidence 0 00012345778889999999999 57899999999998876
No 74
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=93.42 E-value=0.72 Score=42.03 Aligned_cols=151 Identities=11% Similarity=0.131 Sum_probs=84.2
Q ss_pred hhHHHHHHHHhcCCcEEecCCCC----CCHHHH-------HhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEee
Q 025657 92 GECATARAASAAGTIMTLSSWAT----SSVEEV-------SSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTV 160 (249)
Q Consensus 92 gE~~~AraA~~~gi~~~lss~ss----~sleei-------a~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTv 160 (249)
-=.++.+||++.+.|.++...-+ ..++.+ ++...-|..++| |.....+.+.+|-++||..+++
T Consensus 30 ~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHL----DHg~~~e~i~~Ai~~GftSVM~-- 103 (284)
T PRK09195 30 TMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHL----DHHEKFDDIAQKVRSGVRSVMI-- 103 (284)
T ss_pred HHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCEEEe--
Confidence 33489999999999999865321 234443 222344566666 8887889999999999999865
Q ss_pred cCCCCCCchhhhhccCCC-----CCcccc----ccccccccC--CCC-C---CCCchhhhHhhh----------------
Q 025657 161 DTPRLGRREADIKNRFVL-----PPHLTL----KNYEGLYIG--KMD-K---TDDSGLASYVAN---------------- 209 (249)
Q Consensus 161 D~p~~g~Re~d~r~~~~~-----p~~~~~----~~~~~~~~~--~~~-~---~~~~~~~~~~~~---------------- 209 (249)
|...... |.+++.--.+ +.+.+. ..+.+...+ ... . ........++..
T Consensus 104 DgS~l~~-eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~ 182 (284)
T PRK09195 104 DGSHLPF-AQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGM 182 (284)
T ss_pred CCCCCCH-HHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccc
Confidence 4444332 2222210000 000000 000000000 000 0 000011111110
Q ss_pred h-cCCCCCHHHHHHHHHhCCCCEEEEccC--CHHHHHHHhhCC
Q 025657 210 Q-IDRSLNWKDVKWLQTITSLPILVKGVL--TAEDGSKLLSKE 249 (249)
Q Consensus 210 ~-~~~~~tW~dl~wlr~~~~lPivlKGIl--~~eDA~~A~~~~ 249 (249)
. -.|.++|+-|+.|++..+.|+|+=|-. ..||-++|++.|
T Consensus 183 y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~G 225 (284)
T PRK09195 183 YKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLG 225 (284)
T ss_pred cCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcC
Confidence 0 137899999999999999999999874 357777888776
No 75
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=93.35 E-value=0.81 Score=40.61 Aligned_cols=128 Identities=21% Similarity=0.294 Sum_probs=83.2
Q ss_pred HHHHhcCCcEEecCCCCCCHHHHH------hcCCCceeEEEccccChH----HHHHHHHHHH---HcCCcEEEEeecCCC
Q 025657 98 RAASAAGTIMTLSSWATSSVEEVS------STGPGIRFFQLYVTKHRN----VDAQLVKRAE---RAGFKAIALTVDTPR 164 (249)
Q Consensus 98 raA~~~gi~~~lss~ss~sleeia------~~~~~~~wfQlY~~~d~~----~~~~li~rA~---~aG~~alvvTvD~p~ 164 (249)
..-...++.+---|.+..+-||-. ...-+..|++|-+..|.. ...++++-|| +-||..+--|-|-|+
T Consensus 63 ~~l~~~~~~~LPNTaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v 142 (262)
T COG2022 63 DLLIPLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPV 142 (262)
T ss_pred HHhhhcCcEeCCCccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHH
Confidence 333444555444444555655432 122345799887766654 2336666665 579999999999999
Q ss_pred CCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEE-ccCCHHHHH
Q 025657 165 LGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVK-GVLTAEDGS 243 (249)
Q Consensus 165 ~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlK-GIl~~eDA~ 243 (249)
.-+|-.|.--.-.+|-.-. .+ .+. ...+-.-|+-|+++.+.||||- ||-+|-||.
T Consensus 143 ~arrLee~GcaavMPl~aP--------IG-----Sg~-----------G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa 198 (262)
T COG2022 143 LARRLEEAGCAAVMPLGAP--------IG-----SGL-----------GLQNPYNLEIIIEEADVPVIVDAGIGTPSDAA 198 (262)
T ss_pred HHHHHHhcCceEecccccc--------cc-----CCc-----------CcCCHHHHHHHHHhCCCCEEEeCCCCChhHHH
Confidence 9888877654444441100 00 000 1234567899999999999995 999999999
Q ss_pred HHhhCC
Q 025657 244 KLLSKE 249 (249)
Q Consensus 244 ~A~~~~ 249 (249)
.|.|-|
T Consensus 199 ~aMElG 204 (262)
T COG2022 199 QAMELG 204 (262)
T ss_pred HHHhcc
Confidence 999876
No 76
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=93.24 E-value=0.62 Score=40.27 Aligned_cols=163 Identities=16% Similarity=0.124 Sum_probs=79.9
Q ss_pred ccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHH-------hcCCCceeEEEccccChHHHHHHHH
Q 025657 74 SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS-------STGPGIRFFQLYVTKHRNVDAQLVK 146 (249)
Q Consensus 74 ~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia-------~~~~~~~wfQlY~~~d~~~~~~li~ 146 (249)
..|++.+||.+.. +...++++.+.|-.-.+|.. ..+.+++. +....+.-+++.....+....+.++
T Consensus 2 ~~pi~~a~m~g~~------~~~~~~~~~~~G~ig~i~~~-~~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~ 74 (236)
T cd04730 2 RYPIIQAPMAGVS------TPELAAAVSNAGGLGFIGAG-YLTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLE 74 (236)
T ss_pred CCCEECCCCCCCC------CHHHHHHHHhCCCccccCCC-CCCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHH
Confidence 4799999965442 44567777777753444332 22334332 1111233366654332135668889
Q ss_pred HHHHcCCcEEEEeecCCCCCCchh-hhhccCCCCCccccccccccccCCCCCCCCchhh--h-HhhhhcCC--CCCHHHH
Q 025657 147 RAERAGFKAIALTVDTPRLGRREA-DIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLA--S-YVANQIDR--SLNWKDV 220 (249)
Q Consensus 147 rA~~aG~~alvvTvD~p~~g~Re~-d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~--~~tW~dl 220 (249)
.++++|++.|.+.-. .. .... .++ ...++......+..... .....+...+. . .......+ ..+|+.+
T Consensus 75 ~~~~~g~d~v~l~~~-~~--~~~~~~~~-~~~i~~i~~v~~~~~~~--~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i 148 (236)
T cd04730 75 VALEEGVPVVSFSFG-PP--AEVVERLK-AAGIKVIPTVTSVEEAR--KAEAAGADALVAQGAEAGGHRGTFDIGTFALV 148 (236)
T ss_pred HHHhCCCCEEEEcCC-CC--HHHHHHHH-HcCCEEEEeCCCHHHHH--HHHHcCCCEEEEeCcCCCCCCCccccCHHHHH
Confidence 999999999988543 11 1111 111 11111111100000000 00000000000 0 00000001 2357788
Q ss_pred HHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 221 KWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 221 ~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
+.+++..+.|+++= ||-+++|+.++++.|
T Consensus 149 ~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~G 178 (236)
T cd04730 149 PEVRDAVDIPVIAAGGIADGRGIAAALALG 178 (236)
T ss_pred HHHHHHhCCCEEEECCCCCHHHHHHHHHcC
Confidence 88898889998876 466679999988765
No 77
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=93.22 E-value=1.7 Score=39.61 Aligned_cols=149 Identities=19% Similarity=0.252 Sum_probs=82.6
Q ss_pred HHHHHHHHhcCCcEEecCCCC----CCHHHHH-------hcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecC
Q 025657 94 CATARAASAAGTIMTLSSWAT----SSVEEVS-------STGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDT 162 (249)
Q Consensus 94 ~~~AraA~~~gi~~~lss~ss----~sleeia-------~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~ 162 (249)
.++.+||++.+.|.++...-+ ..++.++ +...-|..++| |.....+.+.+|-++||..+++ |.
T Consensus 32 ~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHL----DH~~~~e~i~~ai~~GftSVM~--Dg 105 (284)
T PRK12857 32 QAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHL----DHGTDFEQVMKCIRNGFTSVMI--DG 105 (284)
T ss_pred HHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCeEEE--eC
Confidence 488889999999988865332 2344432 22344566766 8877778888999999988765 45
Q ss_pred CCCCCchhhhhc---------cCCCCCccccccccccccC-CCC--C---CCCchhhhHhhh----------------h-
Q 025657 163 PRLGRREADIKN---------RFVLPPHLTLKNYEGLYIG-KMD--K---TDDSGLASYVAN----------------Q- 210 (249)
Q Consensus 163 p~~g~Re~d~r~---------~~~~p~~~~~~~~~~~~~~-~~~--~---~~~~~~~~~~~~----------------~- 210 (249)
......| +++. .+.++-.--+..+.+.+.+ ... . .++.....++.. .
T Consensus 106 S~lp~ee-Ni~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~ 184 (284)
T PRK12857 106 SKLPLEE-NIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYK 184 (284)
T ss_pred CCCCHHH-HHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccC
Confidence 4443322 2221 0100000000000000000 000 0 000011111110 1
Q ss_pred cCCCCCHHHHHHHHHhCCCCEEEEccC--CHHHHHHHhhCC
Q 025657 211 IDRSLNWKDVKWLQTITSLPILVKGVL--TAEDGSKLLSKE 249 (249)
Q Consensus 211 ~~~~~tW~dl~wlr~~~~lPivlKGIl--~~eDA~~A~~~~ 249 (249)
-.|.++|+-|+.|++..+.|+|+=|-. ..||-++|++.|
T Consensus 185 ~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~G 225 (284)
T PRK12857 185 GEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLG 225 (284)
T ss_pred CCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcC
Confidence 137899999999999999999999974 467778888876
No 78
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=93.07 E-value=0.79 Score=39.42 Aligned_cols=35 Identities=20% Similarity=0.573 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhC
Q 025657 214 SLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSK 248 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~ 248 (249)
..+|+.++.+|+..+.||+.=| |.+++|+.++++.
T Consensus 169 ~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~ 204 (231)
T cd02801 169 PADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQ 204 (231)
T ss_pred CCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHh
Confidence 4579999999999999999965 8899999999875
No 79
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=92.93 E-value=1.7 Score=39.80 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=30.4
Q ss_pred CHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 216 NWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 216 tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
+|+-++.+++..+.|||.=| |.+++|+..|...|
T Consensus 149 ~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~G 183 (307)
T TIGR03151 149 TMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALG 183 (307)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcC
Confidence 68888999999999999985 99999999998776
No 80
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=92.63 E-value=3.7 Score=37.51 Aligned_cols=37 Identities=14% Similarity=0.301 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHhC-CCCEEEEcc--CCHHHHHHHhhCC
Q 025657 213 RSLNWKDVKWLQTIT-SLPILVKGV--LTAEDGSKLLSKE 249 (249)
Q Consensus 213 ~~~tW~dl~wlr~~~-~lPivlKGI--l~~eDA~~A~~~~ 249 (249)
+.++|+-|+.|++.. +.|+|+=|= .+.|+..+|++.|
T Consensus 186 k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~G 225 (293)
T PRK07315 186 EGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLG 225 (293)
T ss_pred CcCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcC
Confidence 469999999999999 599999999 9999999999987
No 81
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=92.55 E-value=1.7 Score=39.93 Aligned_cols=83 Identities=13% Similarity=0.132 Sum_probs=52.9
Q ss_pred cceeeccccccccCCChhhHHHHHHHHhcC-CcEEecCCCC--------CCHHHHHh------cC--CCceeEEEccccC
Q 025657 75 MPIMIAPTAFQKMAHPEGECATARAASAAG-TIMTLSSWAT--------SSVEEVSS------TG--PGIRFFQLYVTKH 137 (249)
Q Consensus 75 ~Pi~iaP~g~~~l~h~~gE~~~AraA~~~g-i~~~lss~ss--------~sleeia~------~~--~~~~wfQlY~~~d 137 (249)
||+++|||++.. +...=+.+.+.| .-++.+-+=+ ....++.. .. ..+.-.||. -.|
T Consensus 1 ~~~~lAPMag~t------d~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-g~~ 73 (312)
T PRK10550 1 MRVLLAPMEGVL------DSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLL-GQY 73 (312)
T ss_pred CCeEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEec-cCC
Confidence 689999987653 555666677777 3443332211 12222221 11 246789996 567
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 138 RNVDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 138 ~~~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
.+...+..++++++||..|=+..-+|+
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~ 100 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPS 100 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCc
Confidence 777778888999999998877777765
No 82
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=92.55 E-value=3.6 Score=37.55 Aligned_cols=149 Identities=17% Similarity=0.187 Sum_probs=83.4
Q ss_pred HHHHHHHHhcCCcEEecCCCC-----CCHHHHHh-------cC--CCceeEEEccccChHHHHHHHHHHHHcCCcEEEEe
Q 025657 94 CATARAASAAGTIMTLSSWAT-----SSVEEVSS-------TG--PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALT 159 (249)
Q Consensus 94 ~~~AraA~~~gi~~~lss~ss-----~sleeia~-------~~--~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvT 159 (249)
.++.+||++.+.|.++..... ..++.++. .. .-|..++| |.....+.+.+|-++||..+++
T Consensus 32 ~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHL----DHg~~~e~i~~ai~~GftSVMi- 106 (288)
T TIGR00167 32 NAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHL----DHGASEEDCAQAVKAGFSSVMI- 106 (288)
T ss_pred HHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEEC----CCCCCHHHHHHHHHcCCCEEEe-
Confidence 488999999999999875332 23554432 23 23556666 8888889999999999999865
Q ss_pred ecCCCCCCchhhhhc---------cCCCCCccccccccccccCC--CC-C--C-CCchhhhHhhh---------------
Q 025657 160 VDTPRLGRREADIKN---------RFVLPPHLTLKNYEGLYIGK--MD-K--T-DDSGLASYVAN--------------- 209 (249)
Q Consensus 160 vD~p~~g~Re~d~r~---------~~~~p~~~~~~~~~~~~~~~--~~-~--~-~~~~~~~~~~~--------------- 209 (249)
|.......| +++. .+.++-.--+..+.+...+. .. . . .......++..
T Consensus 107 -DgS~lp~ee-Ni~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG 184 (288)
T TIGR00167 107 -DGSHEPFEE-NIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHG 184 (288)
T ss_pred -cCCCCCHHH-HHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCcccc
Confidence 554443322 2221 00000000000000000000 00 0 0 00011111110
Q ss_pred -h-cCCC-CCHHHHHHHHHhCCCCEEEEccCC--HHHHHHHhhCC
Q 025657 210 -Q-IDRS-LNWKDVKWLQTITSLPILVKGVLT--AEDGSKLLSKE 249 (249)
Q Consensus 210 -~-~~~~-~tW~dl~wlr~~~~lPivlKGIl~--~eDA~~A~~~~ 249 (249)
. ..|. ++|+-|+.|++..+.|+|+=|-.. .||-++|+++|
T Consensus 185 ~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~~G 229 (288)
T TIGR00167 185 VYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAISLG 229 (288)
T ss_pred ccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcC
Confidence 1 1356 999999999999999999999854 46777888876
No 83
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=92.36 E-value=0.86 Score=39.72 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
..+|+-++.+++.++.|+++=| |.++||+....+.|
T Consensus 179 g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~G 215 (241)
T PRK13585 179 GVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAG 215 (241)
T ss_pred CCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 4689999999999999999988 88899999877655
No 84
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=92.27 E-value=0.88 Score=40.34 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 213 RSLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 213 ~~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
+..+|+-++.+++.++.||+.=| |.++||+..+.+.|
T Consensus 184 ~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g 221 (254)
T TIGR00735 184 SGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKG 221 (254)
T ss_pred CCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 45689999999999999999877 99999999988754
No 85
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=92.19 E-value=0.72 Score=39.91 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
..+|+-++.+++..+.|+++=| |-++||++.+.+.|
T Consensus 175 g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~G 211 (230)
T TIGR00007 175 GPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLG 211 (230)
T ss_pred CCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCC
Confidence 3579999999999999999887 99999999987765
No 86
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=92.11 E-value=2.2 Score=39.70 Aligned_cols=97 Identities=16% Similarity=0.161 Sum_probs=58.8
Q ss_pred CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhh
Q 025657 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS 205 (249)
Q Consensus 126 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (249)
-|.|..|.+.-+.+...++++.++++|+.+|+++=-... | +. +.-| .. .+. .+ +.++..-
T Consensus 211 ~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~---~--~~---~~~~-~~--~~~----~G-----GlSG~~i 270 (335)
T TIGR01036 211 VPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVS---R--SL---VQGP-KN--SDE----TG-----GLSGKPL 270 (335)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCc---c--cc---ccCc-cc--cCC----CC-----cccCHHH
Confidence 468999988777777889999999999999987543321 1 10 1001 00 000 00 0001000
Q ss_pred HhhhhcCCCCCHHHHHHHHHhC--CCCEE-EEccCCHHHHHHHhhCC
Q 025657 206 YVANQIDRSLNWKDVKWLQTIT--SLPIL-VKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 206 ~~~~~~~~~~tW~dl~wlr~~~--~lPiv-lKGIl~~eDA~~A~~~~ 249 (249)
.++.-+-+..+++.. ++||+ +=||.++|||...+.+|
T Consensus 271 -------~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aG 310 (335)
T TIGR01036 271 -------QDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAG 310 (335)
T ss_pred -------HHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcC
Confidence 012234455666666 57999 67799999999999876
No 87
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=92.04 E-value=3.7 Score=37.27 Aligned_cols=150 Identities=19% Similarity=0.229 Sum_probs=83.3
Q ss_pred hHHHHHHHHhcCCcEEecCCCC----CCHHHHH-------hcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeec
Q 025657 93 ECATARAASAAGTIMTLSSWAT----SSVEEVS-------STGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVD 161 (249)
Q Consensus 93 E~~~AraA~~~gi~~~lss~ss----~sleeia-------~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD 161 (249)
=.++.+||++.+.|.++...-. .+++.++ +....|..++| |.....+.+.+|-++||..+++ |
T Consensus 26 ~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHL----DH~~~~~~i~~ai~~GftSVMi--D 99 (276)
T cd00947 26 LKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHL----DHGSSFELIKRAIRAGFSSVMI--D 99 (276)
T ss_pred HHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHhCCCEEEe--C
Confidence 3488899999999999876432 2344432 22345667777 7777778889999999999865 4
Q ss_pred CCCCCCchhhhhc---------cCCCCCccccccccccccCCCC-C---CCCchhhhHhhh----------------h--
Q 025657 162 TPRLGRREADIKN---------RFVLPPHLTLKNYEGLYIGKMD-K---TDDSGLASYVAN----------------Q-- 210 (249)
Q Consensus 162 ~p~~g~Re~d~r~---------~~~~p~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~----------------~-- 210 (249)
......-|. ++. .+.++-.--+..+.+...+... . ........++.. .
T Consensus 100 ~S~l~~eeN-i~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~ 178 (276)
T cd00947 100 GSHLPFEEN-VAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKG 178 (276)
T ss_pred CCCCCHHHH-HHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCC
Confidence 444332221 110 0000000000000000000000 0 000011111111 1
Q ss_pred cCCCCCHHHHHHHHHhCCCCEEEEccC--CHHHHHHHhhCC
Q 025657 211 IDRSLNWKDVKWLQTITSLPILVKGVL--TAEDGSKLLSKE 249 (249)
Q Consensus 211 ~~~~~tW~dl~wlr~~~~lPivlKGIl--~~eDA~~A~~~~ 249 (249)
-.|.++|+-|+.|++..+.|+|+=|=. ..||-++|++.|
T Consensus 179 ~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~G 219 (276)
T cd00947 179 GEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLG 219 (276)
T ss_pred CCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcC
Confidence 147899999999999999999999975 346677787776
No 88
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=91.84 E-value=1.5 Score=39.94 Aligned_cols=93 Identities=16% Similarity=0.090 Sum_probs=56.6
Q ss_pred CCceeEEEccccChHHHHHHHHHHHHc--CCcEEEEe--------ecCCCCCCchhhhhccCCCCCccccccccccccCC
Q 025657 125 PGIRFFQLYVTKHRNVDAQLVKRAERA--GFKAIALT--------VDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGK 194 (249)
Q Consensus 125 ~~~~wfQlY~~~d~~~~~~li~rA~~a--G~~alvvT--------vD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~ 194 (249)
.-|.|..|-+.-|.+.+.++.+.++++ |+++|+++ +|.. |.+ ..++. .+. +
T Consensus 157 ~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~----~~~-----~~~~~----~~~----~-- 217 (294)
T cd04741 157 SIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPE----RET-----VVLKP----KTG----F-- 217 (294)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCC----CCC-----cccCC----CCC----C--
Confidence 357899997776777777888888888 88888753 2310 100 00000 000 0
Q ss_pred CCCCCCchhhhHhhhhcCCCCCHHHH---HHHHHhCC--CCEEEEc-cCCHHHHHHHhhCC
Q 025657 195 MDKTDDSGLASYVANQIDRSLNWKDV---KWLQTITS--LPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~tW~dl---~wlr~~~~--lPivlKG-Il~~eDA~~A~~~~ 249 (249)
.....+.+.|.-+ +.+++..+ .||+-=| |.++|||.+.+.+|
T Consensus 218 -------------gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aG 265 (294)
T cd04741 218 -------------GGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAG 265 (294)
T ss_pred -------------CCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 0011234445444 55567774 8988665 99999999999876
No 89
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=91.79 E-value=2 Score=39.99 Aligned_cols=36 Identities=11% Similarity=0.201 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
...|+.++.+|+.++.||++=| |.+++||..+++.|
T Consensus 271 ~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~ 307 (343)
T cd04734 271 GPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAG 307 (343)
T ss_pred chhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcC
Confidence 4568889999999999999999 88999999998754
No 90
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=91.74 E-value=1.9 Score=40.00 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHhC-CCCEEEEccC-----------------------CHHHHHHHhhCC
Q 025657 212 DRSLNWKDVKWLQTIT-SLPILVKGVL-----------------------TAEDGSKLLSKE 249 (249)
Q Consensus 212 ~~~~tW~dl~wlr~~~-~lPivlKGIl-----------------------~~eDA~~A~~~~ 249 (249)
.|.++|+-|+.|++.+ +.|+|+=|-. ..||-++|+++|
T Consensus 200 ~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~kai~~G 261 (321)
T PRK07084 200 PPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLRKAAKSA 261 (321)
T ss_pred CCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHHHHHHHHHcC
Confidence 4679999999999999 6999999988 458889999877
No 91
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=91.70 E-value=2.9 Score=38.31 Aligned_cols=81 Identities=17% Similarity=0.150 Sum_probs=46.4
Q ss_pred eecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHH-------hcCCCceeEEEccccChH
Q 025657 67 TVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS-------STGPGIRFFQLYVTKHRN 139 (249)
Q Consensus 67 ~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia-------~~~~~~~wfQlY~~~d~~ 139 (249)
++|| +..||+.+||++.. ...++.++.++|..-+++.. ..+.|++. +....+.=.-+.....
T Consensus 6 ~~lg--i~~Pii~apM~~~s------~~~la~avs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~-- 74 (307)
T TIGR03151 6 DLLG--IEYPIFQGGMAWVA------TGSLAAAVSNAGGLGIIGAG-NAPPDVVRKEIRKVKELTDKPFGVNIMLLSP-- 74 (307)
T ss_pred HHhC--CCCCEEcCCCCCCC------CHHHHHHHHhCCCcceeccc-cCCHHHHHHHHHHHHHhcCCCcEEeeecCCC--
Confidence 3454 45899999987632 35688889999988888754 34555442 2122221111111111
Q ss_pred HHHHHHHHHHHcCCcEEEE
Q 025657 140 VDAQLVKRAERAGFKAIAL 158 (249)
Q Consensus 140 ~~~~li~rA~~aG~~alvv 158 (249)
...++++-+.++|++.+.+
T Consensus 75 ~~~~~~~~~~~~~v~~v~~ 93 (307)
T TIGR03151 75 FVDELVDLVIEEKVPVVTT 93 (307)
T ss_pred CHHHHHHHHHhCCCCEEEE
Confidence 1235666667788877765
No 92
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=91.64 E-value=3.2 Score=38.26 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCCcEEecCCCCC----CHHHH-------HhcCC-CceeEEEccccChHHHHHHHHHHHHcCCcEEEEe
Q 025657 94 CATARAASAAGTIMTLSSWATS----SVEEV-------SSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALT 159 (249)
Q Consensus 94 ~~~AraA~~~gi~~~lss~ss~----sleei-------a~~~~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvT 159 (249)
.++.+||++.+.|.++...... .++.+ ++..+ -|..+.| |.....+.+.+|-++||..+++.
T Consensus 31 ~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHL----DHg~~~e~i~~ai~~GftSVM~D 104 (307)
T PRK05835 31 NAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHL----DHGTTFESCEKAVKAGFTSVMID 104 (307)
T ss_pred HHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEEC----CCCCCHHHHHHHHHcCCCEEEEe
Confidence 4888999999999988753322 23322 22233 3455665 88777888899999999888654
No 93
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=91.56 E-value=1.9 Score=39.37 Aligned_cols=149 Identities=17% Similarity=0.224 Sum_probs=80.1
Q ss_pred HHHHHHHHhcCCcEEecCCCC----CCHHHH-------HhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecC
Q 025657 94 CATARAASAAGTIMTLSSWAT----SSVEEV-------SSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDT 162 (249)
Q Consensus 94 ~~~AraA~~~gi~~~lss~ss----~sleei-------a~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~ 162 (249)
.++.+||.+.+.|.++...-+ ..++.+ ++..+-|..++| |.....+.+.+|-++||..+++ |.
T Consensus 32 ~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHL----DH~~~~e~i~~ai~~GftSVMi--Dg 105 (284)
T PRK12737 32 QVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHL----DHHEDLDDIKKKVRAGIRSVMI--DG 105 (284)
T ss_pred HHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCeEEe--cC
Confidence 488889999999988865321 234433 222334566666 7777778889999999988754 44
Q ss_pred CCCCCchhhhhc---------cCCCCCccccccccccccC---CCCC---CCCchhhhHhhh----------------h-
Q 025657 163 PRLGRREADIKN---------RFVLPPHLTLKNYEGLYIG---KMDK---TDDSGLASYVAN----------------Q- 210 (249)
Q Consensus 163 p~~g~Re~d~r~---------~~~~p~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~----------------~- 210 (249)
.....-| +++. .+.+.-.--+..+.+.+.+ .... ..+.....++.. .
T Consensus 106 S~lp~ee-Ni~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~ 184 (284)
T PRK12737 106 SHLSFEE-NIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYK 184 (284)
T ss_pred CCCCHHH-HHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccccC
Confidence 4432211 1111 0000000000000000000 0000 000011111110 0
Q ss_pred cCCCCCHHHHHHHHHhCCCCEEEEccC--CHHHHHHHhhCC
Q 025657 211 IDRSLNWKDVKWLQTITSLPILVKGVL--TAEDGSKLLSKE 249 (249)
Q Consensus 211 ~~~~~tW~dl~wlr~~~~lPivlKGIl--~~eDA~~A~~~~ 249 (249)
-.|.++|+-|+.|++.++.|+|+=|-. ..||-++|++.|
T Consensus 185 ~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~G 225 (284)
T PRK12737 185 GEPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAISLG 225 (284)
T ss_pred CCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCC
Confidence 147899999999999999999999875 456677788776
No 94
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=91.15 E-value=3.9 Score=37.30 Aligned_cols=38 Identities=18% Similarity=0.386 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHhCCCCEEEEccC--CHHHHHHHhhCC
Q 025657 212 DRSLNWKDVKWLQTITSLPILVKGVL--TAEDGSKLLSKE 249 (249)
Q Consensus 212 ~~~~tW~dl~wlr~~~~lPivlKGIl--~~eDA~~A~~~~ 249 (249)
.|.++|+.|+.|++.++.|+|+=|-. ..||-++|+++|
T Consensus 187 ~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~G 226 (285)
T PRK07709 187 EPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLG 226 (285)
T ss_pred CCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcC
Confidence 47899999999999999999999975 457888888876
No 95
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=91.04 E-value=3.8 Score=38.41 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHhC-CCCEEEEccC-----------------------CHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTIT-SLPILVKGVL-----------------------TAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~-~lPivlKGIl-----------------------~~eDA~~A~~~~ 249 (249)
++|+-|+.|++.. +.|||+=|-. ..||-++|+++|
T Consensus 212 LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~G 270 (347)
T PRK09196 212 LAIDRIKEIHARLPNTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHG 270 (347)
T ss_pred ccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCC
Confidence 9999999999999 7999999999 559999999887
No 96
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=90.90 E-value=3.7 Score=35.88 Aligned_cols=35 Identities=9% Similarity=0.243 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhC
Q 025657 214 SLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSK 248 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~ 248 (249)
..+|+-++.+++.++.|++.=| |-+++|+..+.+.
T Consensus 179 g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~ 214 (243)
T cd04731 179 GYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEE 214 (243)
T ss_pred CCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHh
Confidence 4579999999999999999998 8899999988775
No 97
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=90.59 E-value=4.2 Score=37.15 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHhCCCCEEEEccCC--HHHHHHHhhCC
Q 025657 212 DRSLNWKDVKWLQTITSLPILVKGVLT--AEDGSKLLSKE 249 (249)
Q Consensus 212 ~~~~tW~dl~wlr~~~~lPivlKGIl~--~eDA~~A~~~~ 249 (249)
.|.++|+.|+.|++..+.|||+=|-.- -||-++|++.|
T Consensus 187 ~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~G 226 (286)
T PRK08610 187 EPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFG 226 (286)
T ss_pred CCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCC
Confidence 378999999999999999999999754 46777788776
No 98
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=90.59 E-value=4 Score=37.10 Aligned_cols=105 Identities=20% Similarity=0.181 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCcEEecCCCCC---------CHHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 025657 95 ATARAASAAGTIMTLSSWATS---------SVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRL 165 (249)
Q Consensus 95 ~~AraA~~~gi~~~lss~ss~---------sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~ 165 (249)
.+++.+.+.|...+.-+.+.. -+++|.+..+.+..++-= .+.+..++|+++|+++|+|+- .
T Consensus 133 ~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v------~s~~~a~~a~~~G~d~I~v~~----~ 202 (299)
T cd02809 133 DLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGI------LTPEDALRAVDAGADGIVVSN----H 202 (299)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeec------CCHHHHHHHHHCCCCEEEEcC----C
Confidence 556777777776654444322 234555544555666631 234567899999999998872 1
Q ss_pred CCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhC--CCCEEEE-ccCCHHHH
Q 025657 166 GRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTIT--SLPILVK-GVLTAEDG 242 (249)
Q Consensus 166 g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~--~lPivlK-GIl~~eDA 242 (249)
|.|..+ ...-+|+-|.++++.. +.||+.= ||.+++|+
T Consensus 203 gG~~~~----------------------------------------~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~ 242 (299)
T cd02809 203 GGRQLD----------------------------------------GAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDV 242 (299)
T ss_pred CCCCCC----------------------------------------CCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHH
Confidence 211100 0134788889998876 4898876 69999999
Q ss_pred HHHhhCC
Q 025657 243 SKLLSKE 249 (249)
Q Consensus 243 ~~A~~~~ 249 (249)
.+|+..|
T Consensus 243 ~kal~lG 249 (299)
T cd02809 243 LKALALG 249 (299)
T ss_pred HHHHHcC
Confidence 9999876
No 99
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=90.53 E-value=2.9 Score=38.65 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHhC-CCCEEEE-ccCCHHHHHHHhh
Q 025657 214 SLNWKDVKWLQTIT-SLPILVK-GVLTAEDGSKLLS 247 (249)
Q Consensus 214 ~~tW~dl~wlr~~~-~lPivlK-GIl~~eDA~~A~~ 247 (249)
+..|+.+..+++.. +.||+.= ||.+++||..+++
T Consensus 180 ~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~ 215 (318)
T TIGR00742 180 PLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS 215 (318)
T ss_pred chhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh
Confidence 46899999999987 7998765 5999999998764
No 100
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=90.38 E-value=3 Score=36.19 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHh
Q 025657 214 SLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLL 246 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~ 246 (249)
..+|+-++.+++..+.||+.=| |.+++|+..++
T Consensus 183 g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l 216 (232)
T TIGR03572 183 GYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVA 216 (232)
T ss_pred CCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHH
Confidence 4579999999999999999988 99999999843
No 101
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=90.31 E-value=6.2 Score=37.04 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHhC-CCCEEEEccCC-----------------------HHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTIT-SLPILVKGVLT-----------------------AEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~-~lPivlKGIl~-----------------------~eDA~~A~~~~ 249 (249)
|+|+-|+.|++.+ +.|||+=|-.. .||-++|++.|
T Consensus 212 L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~G 270 (347)
T PRK13399 212 LAIDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHG 270 (347)
T ss_pred ccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCC
Confidence 9999999999999 69999999986 58889999887
No 102
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=90.31 E-value=1.9 Score=37.11 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
..+++-++.+++.++.|++.= ||.+++|+.++.++|
T Consensus 159 ~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~G 195 (221)
T PRK01130 159 EPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELG 195 (221)
T ss_pred CcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCC
Confidence 345788999999999998875 566999999998876
No 103
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=90.29 E-value=2.4 Score=37.32 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHhCCCCEEE-EccCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITSLPILV-KGVLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivl-KGIl~~eDA~~A~~~~ 249 (249)
..+|+.|+.++ .+.|||- =||.+++||..+++.|
T Consensus 179 ~ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~~G 213 (233)
T cd02911 179 HADLKKIRDIS--TELFIIGNNSVTTIESAKEMFSYG 213 (233)
T ss_pred CCcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHHcC
Confidence 45788888887 6799887 6799999999998875
No 104
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=90.18 E-value=2.1 Score=36.91 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
.+|+-++.+++.++.|++.=| |.+++|++.+.+.|
T Consensus 177 ~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g 212 (233)
T PRK00748 177 PNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLG 212 (233)
T ss_pred CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 589999999999999999987 99999999988764
No 105
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=90.03 E-value=0.6 Score=40.14 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
.-+|+-++.|++. +.|+|.-| |-+||+|++|.+.|
T Consensus 131 ~pD~~lv~~l~~~-~~pvIaEGri~tpe~a~~al~~G 166 (192)
T PF04131_consen 131 GPDFELVRELVQA-DVPVIAEGRIHTPEQAAKALELG 166 (192)
T ss_dssp SHHHHHHHHHHHT-TSEEEEESS--SHHHHHHHHHTT
T ss_pred CCCHHHHHHHHhC-CCcEeecCCCCCHHHHHHHHhcC
Confidence 4467788888876 89999997 88999999999987
No 106
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=89.97 E-value=2.4 Score=38.86 Aligned_cols=34 Identities=18% Similarity=0.506 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHhCCCCEEE-EccCCHHHHHHHhh
Q 025657 214 SLNWKDVKWLQTITSLPILV-KGVLTAEDGSKLLS 247 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivl-KGIl~~eDA~~A~~ 247 (249)
...|+.++.+++..+.||+. =||.+++||..+++
T Consensus 178 ~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~ 212 (319)
T TIGR00737 178 EANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLE 212 (319)
T ss_pred chhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHH
Confidence 34699999999999999987 56999999999985
No 107
>PRK08185 hypothetical protein; Provisional
Probab=89.81 E-value=8.1 Score=35.21 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHhCCCCEEEEccC--CHHHHHHHhhCC
Q 025657 212 DRSLNWKDVKWLQTITSLPILVKGVL--TAEDGSKLLSKE 249 (249)
Q Consensus 212 ~~~~tW~dl~wlr~~~~lPivlKGIl--~~eDA~~A~~~~ 249 (249)
.|.++|+-|+.|++..+.|||+=|-. ..||-++|++.|
T Consensus 182 kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~G 221 (283)
T PRK08185 182 KPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESVQLG 221 (283)
T ss_pred CCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCC
Confidence 47799999999999999999999865 457777788876
No 108
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=89.41 E-value=3.6 Score=36.19 Aligned_cols=139 Identities=12% Similarity=0.053 Sum_probs=73.9
Q ss_pred HHHHHHHhcCCcEEecCCCCCCHHHHHhcC--C-CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhh
Q 025657 95 ATARAASAAGTIMTLSSWATSSVEEVSSTG--P-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 171 (249)
Q Consensus 95 ~~AraA~~~gi~~~lss~ss~sleeia~~~--~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d 171 (249)
.+.+-++..++|++++ .+-.|+|++.+.. + ...-+=--..+|.+..+++.++ -| ..++|.+|.-. | + -
T Consensus 67 ~I~~i~~~~~~pi~vG-GGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~---fg-~~ivvslD~~~-g-~--v 137 (234)
T PRK13587 67 YIKSLRRLTTKDIEVG-GGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHT---FP-GRIYLSVDAYG-E-D--I 137 (234)
T ss_pred HHHHHHhhcCCeEEEc-CCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHH---cC-CCEEEEEEeeC-C-E--E
Confidence 5667777889999987 5678999987632 1 2222211123466666555443 36 45999999732 1 0 0
Q ss_pred hhccCCCCCccccccccccccCCCCCCCCchhhhHhhhh-----cCCCCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHH
Q 025657 172 IKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQ-----IDRSLNWKDVKWLQTITSLPILVKG-VLTAEDGSKL 245 (249)
Q Consensus 172 ~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A 245 (249)
.-++..-...+++-.+... +.. .+....+-.. .....+.+-++.+++.++.|+++=| |-+.||.+.+
T Consensus 138 ~~~gw~~~~~~~~~~~~~~-~~~------~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l 210 (234)
T PRK13587 138 KVNGWEEDTELNLFSFVRQ-LSD------IPLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRL 210 (234)
T ss_pred EecCCcccCCCCHHHHHHH-HHH------cCCCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHH
Confidence 0001000000000000000 000 0000000000 0123567788999999999999998 9999999998
Q ss_pred hhCC
Q 025657 246 LSKE 249 (249)
Q Consensus 246 ~~~~ 249 (249)
.+.|
T Consensus 211 ~~~G 214 (234)
T PRK13587 211 ASLN 214 (234)
T ss_pred HHcC
Confidence 8765
No 109
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=89.04 E-value=7 Score=36.71 Aligned_cols=35 Identities=9% Similarity=0.113 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHhC-CCCEEEEccCC-----------------------HHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTIT-SLPILVKGVLT-----------------------AEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~-~lPivlKGIl~-----------------------~eDA~~A~~~~ 249 (249)
++|+-|+.|++.. +.|+|+=|-.. .||-++|++.|
T Consensus 210 Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~G 268 (347)
T TIGR01521 210 LAIQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYG 268 (347)
T ss_pred cCHHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCC
Confidence 9999999999999 69999999986 68899999877
No 110
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=88.94 E-value=2 Score=36.88 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=46.6
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCC
Q 025657 137 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 216 (249)
Q Consensus 137 d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 216 (249)
+.....++.++.+++|+++|-+..|--.. .-+
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~------------------------------------------------~g~ 60 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYF------------------------------------------------QGS 60 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCcccc------------------------------------------------CCC
Confidence 34445578888899999999665552110 113
Q ss_pred HHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 217 WKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 217 W~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
.++++.+|+..+.||++|| |.++++++.|.+.|
T Consensus 61 ~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~G 94 (217)
T cd00331 61 LEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAG 94 (217)
T ss_pred HHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcC
Confidence 3678889998899999998 45556899998876
No 111
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=88.38 E-value=6.5 Score=35.71 Aligned_cols=38 Identities=26% Similarity=0.194 Sum_probs=23.9
Q ss_pred eeecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEe
Q 025657 66 TTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL 109 (249)
Q Consensus 66 t~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~l 109 (249)
++++|.++..||++|.-... ..+| ..+.+.+.|..+++
T Consensus 1 ~~~~Gl~l~nPi~~Asg~~~----~~~e--~~~~~~~~G~Gavv 38 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPWC----TTLE--DLLELAASSTGAVT 38 (294)
T ss_pred CccCCeeCCCCCEECCCCCC----CCHH--HHHHHHHcCCcEEE
Confidence 57899999999999872221 2233 34444446666654
No 112
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=88.10 E-value=7.5 Score=35.91 Aligned_cols=82 Identities=20% Similarity=0.171 Sum_probs=52.9
Q ss_pred ceeeccccccccCCChhhHHHHHHHHhcCC-cEEecCCCC------CCHHHHHhcCC--CceeEEEccccChHHHHHHHH
Q 025657 76 PIMIAPTAFQKMAHPEGECATARAASAAGT-IMTLSSWAT------SSVEEVSSTGP--GIRFFQLYVTKHRNVDAQLVK 146 (249)
Q Consensus 76 Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi-~~~lss~ss------~sleeia~~~~--~~~wfQlY~~~d~~~~~~li~ 146 (249)
||++|||.+.. +...=+.+++.|. -++.+-+-+ ....+.....+ .+.-+||. -.|.+...+..+
T Consensus 2 ~~~lAPM~g~T------d~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDWT------DRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLG-GSDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEc-cCCHHHHHHHHH
Confidence 78999976553 5566667777776 233222111 11222222222 46789996 567777778889
Q ss_pred HHHHcCCcEEEEeecCCC
Q 025657 147 RAERAGFKAIALTVDTPR 164 (249)
Q Consensus 147 rA~~aG~~alvvTvD~p~ 164 (249)
.+++.||+.|=|..-+|+
T Consensus 75 ~~~~~g~d~IDlN~GCP~ 92 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPS 92 (318)
T ss_pred HHHhCCCCEEEEECCCCH
Confidence 999999999877777766
No 113
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=88.08 E-value=4.4 Score=37.54 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHhC-CCCEEE-EccCCHHHHHHHhh
Q 025657 213 RSLNWKDVKWLQTIT-SLPILV-KGVLTAEDGSKLLS 247 (249)
Q Consensus 213 ~~~tW~dl~wlr~~~-~lPivl-KGIl~~eDA~~A~~ 247 (249)
++..|+.++.+++.. +.||+. =||.+++||..+++
T Consensus 189 ~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~ 225 (333)
T PRK11815 189 PPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ 225 (333)
T ss_pred CCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh
Confidence 467899999999985 899998 67999999998875
No 114
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=87.73 E-value=12 Score=32.17 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeE----EEccccChH----HHHHHHHHHHHcCCcEEEEeecCCCC
Q 025657 94 CATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFF----QLYVTKHRN----VDAQLVKRAERAGFKAIALTVDTPRL 165 (249)
Q Consensus 94 ~~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wf----QlY~~~d~~----~~~~li~rA~~aG~~alvvTvD~p~~ 165 (249)
..+|+++.+.|+.. +|-.+..-++.|.+. ...+.+ |-| .+.+ ...+.++.|.++|++.|++ |.+..
T Consensus 30 ~~~a~~~~~~G~~~-~~~~~~~~~~~i~~~-~~iPil~~~~~~~--~~~~~~ig~~~~~~~~a~~aGad~I~~--~~~~~ 103 (219)
T cd04729 30 AAMALAAVQGGAVG-IRANGVEDIRAIRAR-VDLPIIGLIKRDY--PDSEVYITPTIEEVDALAAAGADIIAL--DATDR 103 (219)
T ss_pred HHHHHHHHHCCCeE-EEcCCHHHHHHHHHh-CCCCEEEEEecCC--CCCCceeCCCHHHHHHHHHcCCCEEEE--eCCCC
Confidence 38999999999976 432222223444433 222222 221 1101 1235779999999995544 54331
Q ss_pred CCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHH
Q 025657 166 GRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKL 245 (249)
Q Consensus 166 g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A 245 (249)
. .|. .....+-++++++.-+.|+++ ++.+++|++.+
T Consensus 104 ~-----------~p~--------------------------------~~~~~~~i~~~~~~g~~~iiv-~v~t~~ea~~a 139 (219)
T cd04729 104 P-----------RPD--------------------------------GETLAELIKRIHEEYNCLLMA-DISTLEEALNA 139 (219)
T ss_pred C-----------CCC--------------------------------CcCHHHHHHHHHHHhCCeEEE-ECCCHHHHHHH
Confidence 0 110 001224466777766566665 89999999998
Q ss_pred hhCC
Q 025657 246 LSKE 249 (249)
Q Consensus 246 ~~~~ 249 (249)
.+.|
T Consensus 140 ~~~G 143 (219)
T cd04729 140 AKLG 143 (219)
T ss_pred HHcC
Confidence 8876
No 115
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=87.68 E-value=4 Score=35.14 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
..+|+-++.+++.++.|++.=| |.+++|++++.+.|
T Consensus 176 g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~G 212 (234)
T cd04732 176 GPNFELYKELAAATGIPVIASGGVSSLDDIKALKELG 212 (234)
T ss_pred CCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCC
Confidence 3579999999999999998776 99999999987764
No 116
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=87.60 E-value=9.1 Score=34.74 Aligned_cols=161 Identities=17% Similarity=0.224 Sum_probs=88.0
Q ss_pred ccccceeeccccccccCCCh-hh-H--HHHHHHHhcC-CcEEecCCCCCCHHHHHhcCC-CceeEEEcccc-----ChHH
Q 025657 72 NISMPIMIAPTAFQKMAHPE-GE-C--ATARAASAAG-TIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTK-----HRNV 140 (249)
Q Consensus 72 ~~~~Pi~iaP~g~~~l~h~~-gE-~--~~AraA~~~g-i~~~lss~ss~sleeia~~~~-~~~wfQlY~~~-----d~~~ 140 (249)
+...|++|.-.-.+ +-+.. .+ + .+...|++.+ +|+++----..++|.|.++.. +..+.|+=-.. +-+.
T Consensus 38 ~~~~PvIl~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~ 116 (282)
T TIGR01859 38 EENSPVIIQVSEGA-IKYMGGYKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLAL 116 (282)
T ss_pred HhCCCEEEEcCcch-hhccCcHHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHH
Confidence 45577776532211 11212 12 2 3444577777 898887544457887765432 44566663322 3356
Q ss_pred HHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhcc----CCCCCcccccccc---c-----cccCCCCCCCCchhhhHhh
Q 025657 141 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNR----FVLPPHLTLKNYE---G-----LYIGKMDKTDDSGLASYVA 208 (249)
Q Consensus 141 ~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~----~~~p~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~ 208 (249)
++++++.|++.|+. +-.-+.. .|.-+ |.-.+ ++-|.. ...+. + ..+++.. +. +.
T Consensus 117 t~~v~~~a~~~gv~-Ve~ElG~--~gg~e-d~~~g~~~~~t~~ee--a~~f~~~tgvD~Lavs~Gt~h-----g~--~~- 182 (282)
T TIGR01859 117 TKKVVEIAHAKGVS-VEAELGT--LGGIE-DGVDEKEAELADPDE--AEQFVKETGVDYLAAAIGTSH-----GK--YK- 182 (282)
T ss_pred HHHHHHHHHHcCCE-EEEeeCC--CcCcc-ccccccccccCCHHH--HHHHHHHHCcCEEeeccCccc-----cc--cC-
Confidence 77888888888863 3333332 22111 21111 111100 00000 0 0111100 00 00
Q ss_pred hhcCCCCCHHHHHHHHHhCCCCEEEEc--cCCHHHHHHHhhCC
Q 025657 209 NQIDRSLNWKDVKWLQTITSLPILVKG--VLTAEDGSKLLSKE 249 (249)
Q Consensus 209 ~~~~~~~tW~dl~wlr~~~~lPivlKG--Il~~eDA~~A~~~~ 249 (249)
-.+.++++-|+.|++..+.||++=| =.+.|+..+++++|
T Consensus 183 --~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~G 223 (282)
T TIGR01859 183 --GEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLG 223 (282)
T ss_pred --CCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcC
Confidence 1368999999999999999999999 88899999999887
No 117
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=87.49 E-value=2.1 Score=36.19 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=57.4
Q ss_pred EEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhh
Q 025657 130 FQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVAN 209 (249)
Q Consensus 130 fQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (249)
+-++-..+.+...++++.+.++|++.|-+|...+..-.--+.++..+.- ..+...++... .........-..
T Consensus 7 ~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~-~~iGag~v~~~-------~~~~~a~~~Ga~ 78 (190)
T cd00452 7 VAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPE-ALIGAGTVLTP-------EQADAAIAAGAQ 78 (190)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCC-CEEEEEeCCCH-------HHHHHHHHcCCC
Confidence 3344445677777888888888999888888766422222333333310 00011111100 000000000000
Q ss_pred -hcCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 210 -QIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 210 -~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
...|..+ .++...++..+.|+++ |+.|++|+.+|.+.|
T Consensus 79 ~i~~p~~~-~~~~~~~~~~~~~~i~-gv~t~~e~~~A~~~G 117 (190)
T cd00452 79 FIVSPGLD-PEVVKAANRAGIPLLP-GVATPTEIMQALELG 117 (190)
T ss_pred EEEcCCCC-HHHHHHHHHcCCcEEC-CcCCHHHHHHHHHCC
Confidence 1112222 4555666667788777 999999999999886
No 118
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=87.42 E-value=2.9 Score=36.63 Aligned_cols=176 Identities=16% Similarity=0.238 Sum_probs=102.0
Q ss_pred cccccCCChHHHHHHHHHhCChhhhhhhccCccchHHHHHHHHhhcccceeccccCCCCC-CccceeecCcccccceeec
Q 025657 2 TYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSK-IDMTTTVLGFNISMPIMIA 80 (249)
Q Consensus 2 ~~~~~~~~i~d~e~~A~~~Lp~~~~~Y~~gGa~de~t~~~N~~af~~~~l~pr~l~~v~~-~d~st~llG~~~~~Pi~ia 80 (249)
|++..-.+.+|+++.+++... | -|..+.+.|..+.-..+ ..-+..-.+.-+.+|++..
T Consensus 13 T~L~p~~t~~~i~~~~~~A~~-----~----------------~~~avcv~p~~v~~a~~~l~~~~v~v~tVigFP~G~~ 71 (221)
T PRK00507 13 TLLKPEATEEDIDKLCDEAKE-----Y----------------GFASVCVNPSYVKLAAELLKGSDVKVCTVIGFPLGAN 71 (221)
T ss_pred ccCCCCCCHHHHHHHHHHHHH-----h----------------CCeEEEECHHHHHHHHHHhCCCCCeEEEEecccCCCC
Confidence 345555677888887777442 1 35566666765553321 1111122333346676665
Q ss_pred cccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHH----HHHhcCC--CceeEEEccc---cChHHHHHHHHHHHHc
Q 025657 81 PTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVE----EVSSTGP--GIRFFQLYVT---KHRNVDAQLVKRAERA 151 (249)
Q Consensus 81 P~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sle----eia~~~~--~~~wfQlY~~---~d~~~~~~li~rA~~a 151 (249)
++..- -.+.+.++..+|.+..+.+=+|+.-+--++ ||.+... .+..+.+.+- =+.+....+.+-+.++
T Consensus 72 ~~~~K---~~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~a 148 (221)
T PRK00507 72 TTAVK---AFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEA 148 (221)
T ss_pred hHHHH---HHHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHh
Confidence 54322 133455677777777766666665554444 3332111 2346666221 1344457778888889
Q ss_pred CCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCE
Q 025657 152 GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPI 231 (249)
Q Consensus 152 G~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPi 231 (249)
|+. ++-|-- ||. + ...|-++++-+++..+..+
T Consensus 149 gad-fIKTsT-------------G~~-~---------------------------------~gat~~~v~~m~~~~~~~~ 180 (221)
T PRK00507 149 GAD-FVKTST-------------GFS-T---------------------------------GGATVEDVKLMRETVGPRV 180 (221)
T ss_pred CCC-EEEcCC-------------CCC-C---------------------------------CCCCHHHHHHHHHHhCCCc
Confidence 987 333322 111 0 1245688999999998777
Q ss_pred EEE---ccCCHHHHHHHhhCC
Q 025657 232 LVK---GVLTAEDGSKLLSKE 249 (249)
Q Consensus 232 vlK---GIl~~eDA~~A~~~~ 249 (249)
-|| ||.+.+||..-+++|
T Consensus 181 ~IKasGGIrt~~~a~~~i~aG 201 (221)
T PRK00507 181 GVKASGGIRTLEDALAMIEAG 201 (221)
T ss_pred eEEeeCCcCCHHHHHHHHHcC
Confidence 777 799999999988877
No 119
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=87.35 E-value=6.8 Score=36.28 Aligned_cols=88 Identities=19% Similarity=0.095 Sum_probs=55.3
Q ss_pred CcccccceeeccccccccCCChhhHHHHHHHHhcCC-cEEecCCCC------CCHHHHHhcCC--CceeEEEccccChHH
Q 025657 70 GFNISMPIMIAPTAFQKMAHPEGECATARAASAAGT-IMTLSSWAT------SSVEEVSSTGP--GIRFFQLYVTKHRNV 140 (249)
Q Consensus 70 G~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi-~~~lss~ss------~sleeia~~~~--~~~wfQlY~~~d~~~ 140 (249)
+.....|+++|||.+.. +...=+-|++.|. ..+.+-+-+ ....+.....+ .+.-+||. -.|.+.
T Consensus 6 ~~~~~~~~~lAPM~g~t------d~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~ 78 (333)
T PRK11815 6 SKLPSRRFSVAPMMDWT------DRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLG-GSDPAD 78 (333)
T ss_pred ccCCCCCEEEeCCCCCc------CHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEe-CCCHHH
Confidence 44567799999977553 4455555677775 233222111 11122222222 56789995 467777
Q ss_pred HHHHHHHHHHcCCcEEEEeecCCC
Q 025657 141 DAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 141 ~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
..+-.++++++||..|=|...+|.
T Consensus 79 ~~~aA~~~~~~g~d~IdlN~gCP~ 102 (333)
T PRK11815 79 LAEAAKLAEDWGYDEINLNVGCPS 102 (333)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCH
Confidence 778889999999999877777765
No 120
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=87.29 E-value=5.7 Score=36.94 Aligned_cols=35 Identities=3% Similarity=0.050 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHhCCCCEEE-EccCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTITSLPILV-KGVLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~~lPivl-KGIl~~eDA~~A~~~~ 249 (249)
..|+..+.+|+.++.||+. =+|.++++|+.+++.|
T Consensus 262 ~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g 297 (337)
T PRK13523 262 YQVPFAEHIREHANIATGAVGLITSGAQAEEILQNN 297 (337)
T ss_pred ccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcC
Confidence 3678889999999999765 5567999999999865
No 121
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=86.51 E-value=2.9 Score=36.31 Aligned_cols=109 Identities=15% Similarity=0.085 Sum_probs=67.6
Q ss_pred eEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccc--cccccccccCCCCCCCCchhhhH
Q 025657 129 FFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLT--LKNYEGLYIGKMDKTDDSGLASY 206 (249)
Q Consensus 129 wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 206 (249)
-+-+.-..|.+...++++...+.|++.+-||.++|..-.--+.++..| | .+. ..++...+ ........
T Consensus 10 liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~--~-~~~vGAGTVl~~~-------~a~~a~~a 79 (204)
T TIGR01182 10 IVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEV--P-DALIGAGTVLNPE-------QLRQAVDA 79 (204)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHC--C-CCEEEEEeCCCHH-------HHHHHHHc
Confidence 444444567888889999999999999999999988666566666655 2 111 11111110 00000000
Q ss_pred hhh-hcCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 207 VAN-QIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 207 ~~~-~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
-.. ...|.++-+-+++ ....+.|++- |++||-|+..|.++|
T Consensus 80 GA~FivsP~~~~~v~~~-~~~~~i~~iP-G~~TptEi~~A~~~G 121 (204)
T TIGR01182 80 GAQFIVSPGLTPELAKH-AQDHGIPIIP-GVATPSEIMLALELG 121 (204)
T ss_pred CCCEEECCCCCHHHHHH-HHHcCCcEEC-CCCCHHHHHHHHHCC
Confidence 011 2345555555555 4456777776 999999999999987
No 122
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=85.63 E-value=2.5 Score=37.80 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=55.2
Q ss_pred HHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCC
Q 025657 117 VEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMD 196 (249)
Q Consensus 117 leeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~ 196 (249)
|.||..+.|...|+.- .....++.+..+++|+.+|-+-.|...+|
T Consensus 53 Iaeik~~sps~g~i~~-----~~~~~~~A~~~~~~GA~aisvlte~~~f~------------------------------ 97 (260)
T PRK00278 53 IAEVKKASPSKGVIRE-----DFDPVEIAKAYEAGGAACLSVLTDERFFQ------------------------------ 97 (260)
T ss_pred EEEeeCCCCCCCccCC-----CCCHHHHHHHHHhCCCeEEEEecccccCC------------------------------
Confidence 4566666665456532 23345788888999999998777743210
Q ss_pred CCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEcc-CCHHHHHHHhhCC
Q 025657 197 KTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGV-LTAEDGSKLLSKE 249 (249)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKGI-l~~eDA~~A~~~~ 249 (249)
=+.++|..+|+..++||+.|-. .++-.+..|.++|
T Consensus 98 ------------------g~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~G 133 (260)
T PRK00278 98 ------------------GSLEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAG 133 (260)
T ss_pred ------------------CCHHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcC
Confidence 1358899999999999999984 4556666676665
No 123
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=85.10 E-value=6 Score=34.85 Aligned_cols=34 Identities=9% Similarity=0.193 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhC
Q 025657 215 LNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSK 248 (249)
Q Consensus 215 ~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~ 248 (249)
.+|+-++.+++.++.|++.=| |.++||...+.+.
T Consensus 184 ~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~ 218 (253)
T PRK02083 184 YDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTE 218 (253)
T ss_pred cCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHh
Confidence 368999999999999999998 9999999988763
No 124
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=84.57 E-value=10 Score=33.11 Aligned_cols=133 Identities=16% Similarity=0.129 Sum_probs=78.4
Q ss_pred hHHHHHHHHhcCCcEEecCCCCCCHHHHHhcC--C-CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCch
Q 025657 93 ECATARAASAAGTIMTLSSWATSSVEEVSSTG--P-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRRE 169 (249)
Q Consensus 93 E~~~AraA~~~gi~~~lss~ss~sleeia~~~--~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re 169 (249)
...+.+.++..++|+.++- +-.++|++.+.. + ...-+=-....| +..++++++- |-..+++.+|.-. |+..
T Consensus 67 ~~~i~~i~~~~~~~v~vgG-Gir~~edv~~~l~~Ga~~viigt~~~~~-~~~~~~~~~~---~~~~iivslD~~~-~~~~ 140 (233)
T cd04723 67 DEAIRELAAAWPLGLWVDG-GIRSLENAQEWLKRGASRVIVGTETLPS-DDDEDRLAAL---GEQRLVLSLDFRG-GQLL 140 (233)
T ss_pred HHHHHHHHHhCCCCEEEec-CcCCHHHHHHHHHcCCCeEEEcceeccc-hHHHHHHHhc---CCCCeEEEEeccC-Ceec
Confidence 3356666777889999885 678899987632 2 223344444567 7776666554 4357999999732 2111
Q ss_pred hhhhccCCCCCccccccc--------cccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEc-cCCHH
Q 025657 170 ADIKNRFVLPPHLTLKNY--------EGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAE 240 (249)
Q Consensus 170 ~d~r~~~~~p~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKG-Il~~e 240 (249)
+ .+...++..+ ..+-+-+....+ .....+.+-++.+.+.++.|+++=| |-+.|
T Consensus 141 ---~----~~~~~~~~~~~~~~~~~~~~li~~di~~~G-----------~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~e 202 (233)
T cd04723 141 ---K----PTDFIGPEELLRRLAKWPEELIVLDIDRVG-----------SGQGPDLELLERLAARADIPVIAAGGVRSVE 202 (233)
T ss_pred ---c----ccCcCCHHHHHHHHHHhCCeEEEEEcCccc-----------cCCCcCHHHHHHHHHhcCCCEEEeCCCCCHH
Confidence 0 0101111000 000000000000 0124567788899999999999998 99999
Q ss_pred HHHHHhhCC
Q 025657 241 DGSKLLSKE 249 (249)
Q Consensus 241 DA~~A~~~~ 249 (249)
|++.+.+.|
T Consensus 203 di~~l~~~G 211 (233)
T cd04723 203 DLELLKKLG 211 (233)
T ss_pred HHHHHHHcC
Confidence 999998765
No 125
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=84.17 E-value=18 Score=33.64 Aligned_cols=39 Identities=31% Similarity=0.463 Sum_probs=27.8
Q ss_pred cceeecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEe
Q 025657 64 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL 109 (249)
Q Consensus 64 ~st~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~l 109 (249)
++|+++|.++..||++|. |. ...+| ..+...++|..+++
T Consensus 46 L~~~~~Gl~l~NPi~lAs-G~----~~~~~--~~~~~~~~G~Gavv 84 (335)
T TIGR01036 46 LEVTVLGLKFPNPLGLAA-GF----DKDGE--AIDALGAMGFGFLE 84 (335)
T ss_pred CcEEECCEECCCCcEeCC-cc----CCCHH--HHHHHHhcCCCEEE
Confidence 899999999999999944 32 23445 45555566777764
No 126
>PLN02826 dihydroorotate dehydrogenase
Probab=84.12 E-value=7.6 Score=37.23 Aligned_cols=97 Identities=15% Similarity=0.197 Sum_probs=59.9
Q ss_pred CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccc-cccccCCCCCCCCchhh
Q 025657 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY-EGLYIGKMDKTDDSGLA 204 (249)
Q Consensus 126 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~ 204 (249)
-|.|..|-+.-+.+...++++.|+++|+.+|+++=-+.. |.-|+.. .+ ..+. .+++ +..
T Consensus 263 ~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~---r~~dl~~---~~----~~~~~GGlS--------G~p-- 322 (409)
T PLN02826 263 PPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTIS---RPDSVLG---HP----HADEAGGLS--------GKP-- 322 (409)
T ss_pred CceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCc---Cccchhc---cc----ccccCCCcC--------Ccc--
Confidence 467899976667667889999999999999998743321 1112211 00 0000 0000 000
Q ss_pred hHhhhhcCCCCCHHHHHHHHHhC--CCCEE-EEccCCHHHHHHHhhCC
Q 025657 205 SYVANQIDRSLNWKDVKWLQTIT--SLPIL-VKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 205 ~~~~~~~~~~~tW~dl~wlr~~~--~lPiv-lKGIl~~eDA~~A~~~~ 249 (249)
+ -+.+.+-|..+++.. ++||| +=||.+++||.+.+.+|
T Consensus 323 ------l-~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AG 363 (409)
T PLN02826 323 ------L-FDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAG 363 (409)
T ss_pred ------c-cHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhC
Confidence 0 123445677777777 57877 56899999999999887
No 127
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=83.81 E-value=6.6 Score=33.78 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
.+|+.++.+++..+.|+++= ||.+++|+..++++|
T Consensus 164 ~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~G 199 (219)
T cd04729 164 PDFELLKELRKALGIPVIAEGRINSPEQAAKALELG 199 (219)
T ss_pred CCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCC
Confidence 47889999999999999874 577999999998876
No 128
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=83.77 E-value=18 Score=33.49 Aligned_cols=92 Identities=24% Similarity=0.345 Sum_probs=48.6
Q ss_pred ccceeecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhc-CCCceeEEEcc-------
Q 025657 63 DMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSST-GPGIRFFQLYV------- 134 (249)
Q Consensus 63 d~st~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~-~~~~~wfQlY~------- 134 (249)
+++|+++|.++.-||++|. +....++|...+.++...|-..+ .| .+.+ .+. .|.|+.|-+.-
T Consensus 1 ~l~~~~~Gl~f~NPl~lAa----G~~~~~~~~~~~~~~~g~G~i~~-kt---vt~~--pq~Gnp~PR~~~l~~~~~~iN~ 70 (310)
T COG0167 1 DLSTEILGLKFPNPLGLAA----GFDGKNGEELDALAALGFGAIVT-KT---VTPE--PQEGNPKPRLFRLPEDEGLINR 70 (310)
T ss_pred CCceeecceecCCCCeEcc----cCCccCHHHHHHHHhcCCceEEe-cC---CCCc--CCCCCCCCeEEEecCcccHHHh
Confidence 4788899999999999976 32113556555544444443332 22 2333 222 34667776641
Q ss_pred -ccChHHHHHHHHHHHHcCCcE------EEEeecCCC
Q 025657 135 -TKHRNVDAQLVKRAERAGFKA------IALTVDTPR 164 (249)
Q Consensus 135 -~~d~~~~~~li~rA~~aG~~a------lvvTvD~p~ 164 (249)
-=+..-...++++-+..-.+. |...++++.
T Consensus 71 mG~~N~G~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~ 107 (310)
T COG0167 71 MGFNNPGADAFLEELKLAKYEGKPIGVNIGKNKGGPS 107 (310)
T ss_pred cCCCchhHHHHHHHHHhhhhccCCcCcceEEecCCCc
Confidence 002223345555544444433 555666544
No 129
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=82.74 E-value=18 Score=33.60 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
...|+..+.+|+.++.||++=|=.++++|..+++.|
T Consensus 271 ~~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g 306 (338)
T cd02933 271 DQPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADG 306 (338)
T ss_pred ccchHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcC
Confidence 457888999999999999999988999999999865
No 130
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=81.81 E-value=8.9 Score=33.71 Aligned_cols=136 Identities=13% Similarity=0.089 Sum_probs=74.9
Q ss_pred HHHHHHHHhcCCcEEecCCCCCCHHHHHhcC--C-CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCC---C--C
Q 025657 94 CATARAASAAGTIMTLSSWATSSVEEVSSTG--P-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTP---R--L 165 (249)
Q Consensus 94 ~~~AraA~~~gi~~~lss~ss~sleeia~~~--~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p---~--~ 165 (249)
-.+.+-++..++|+.++ .+-.|+|++...- + ...-+=-...+|++...+++++.. +.+++.+|.. + .
T Consensus 65 ~~i~~i~~~~~~pv~vg-GGirs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~----~~i~vsld~~~~~v~~~ 139 (241)
T PRK14024 65 ELLAEVVGKLDVKVELS-GGIRDDESLEAALATGCARVNIGTAALENPEWCARVIAEHG----DRVAVGLDVRGHTLAAR 139 (241)
T ss_pred HHHHHHHHHcCCCEEEc-CCCCCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhh----hhEEEEEEEeccEeccC
Confidence 35566667778999987 4577889887532 1 122222334478888888887653 3466777752 1 2
Q ss_pred CCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHH
Q 025657 166 GRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDGSK 244 (249)
Q Consensus 166 g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~ 244 (249)
||.+.. .+-..+-..+.-..+..+-+...... ... ...+|+-++.+++..+.||+.=| |.++||++.
T Consensus 140 Gw~~~~-~~~~~~~~~l~~~G~~~iiv~~~~~~----------g~~-~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~ 207 (241)
T PRK14024 140 GWTRDG-GDLWEVLERLDSAGCSRYVVTDVTKD----------GTL-TGPNLELLREVCARTDAPVVASGGVSSLDDLRA 207 (241)
T ss_pred CeeecC-ccHHHHHHHHHhcCCCEEEEEeecCC----------CCc-cCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHH
Confidence 333211 00000000000000000000000000 011 13489999999999999999998 999999988
Q ss_pred Hh
Q 025657 245 LL 246 (249)
Q Consensus 245 A~ 246 (249)
+.
T Consensus 208 l~ 209 (241)
T PRK14024 208 LA 209 (241)
T ss_pred Hh
Confidence 74
No 131
>PLN02591 tryptophan synthase
Probab=81.47 E-value=26 Score=31.29 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=27.5
Q ss_pred HHHHHHHhCCCCEEE-EccCCHHHHHHHhhCC
Q 025657 219 DVKWLQTITSLPILV-KGVLTAEDGSKLLSKE 249 (249)
Q Consensus 219 dl~wlr~~~~lPivl-KGIl~~eDA~~A~~~~ 249 (249)
.++.+|+.++.|+++ =||.++||++++.++|
T Consensus 180 ~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~G 211 (250)
T PLN02591 180 LLQELKEVTDKPVAVGFGISKPEHAKQIAGWG 211 (250)
T ss_pred HHHHHHhcCCCceEEeCCCCCHHHHHHHHhcC
Confidence 489999999999999 4899999999998874
No 132
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=81.21 E-value=6.5 Score=34.23 Aligned_cols=112 Identities=14% Similarity=0.140 Sum_probs=68.9
Q ss_pred eEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCcccc--ccccccccCCCCCCCCchhhhH
Q 025657 129 FFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTL--KNYEGLYIGKMDKTDDSGLASY 206 (249)
Q Consensus 129 wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 206 (249)
-+-+.-..+.+....+++...+.|++.+=||.++|..-.--+.++..|.--+++.. ..+.... ........
T Consensus 15 vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~-------~~~~a~~a 87 (213)
T PRK06552 15 VVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAV-------TARLAILA 87 (213)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHH-------HHHHHHHc
Confidence 44555556888899999999999999999999999877767777766531011211 1111100 00000000
Q ss_pred hhh-hcCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 207 VAN-QIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 207 ~~~-~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
-.. ...|.++-+=+++ ...-+.|++- |++|+.|+..|.++|
T Consensus 88 GA~FivsP~~~~~v~~~-~~~~~i~~iP-G~~T~~E~~~A~~~G 129 (213)
T PRK06552 88 GAQFIVSPSFNRETAKI-CNLYQIPYLP-GCMTVTEIVTALEAG 129 (213)
T ss_pred CCCEEECCCCCHHHHHH-HHHcCCCEEC-CcCCHHHHHHHHHcC
Confidence 011 2245555444555 4456777665 999999999999887
No 133
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=81.10 E-value=14 Score=33.99 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHhCCCCEEE-EccCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTITSLPILV-KGVLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~~lPivl-KGIl~~eDA~~A~~~~ 249 (249)
.+|+.+++||+.++.||++ -.+.+++|+.++++.|
T Consensus 227 ~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~ 262 (357)
T cd03316 227 DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAG 262 (357)
T ss_pred cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhC
Confidence 4689999999999999988 4578999999998753
No 134
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=80.85 E-value=7.5 Score=34.25 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=27.3
Q ss_pred HHHHHHHHHhC-CCCEEEEc-cCCHHHHHHHhhCC
Q 025657 217 WKDVKWLQTIT-SLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 217 W~dl~wlr~~~-~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
-+.++++|+.+ +.||++=| |-++|+++.++++|
T Consensus 173 ~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~g 207 (244)
T PRK13125 173 ERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAG 207 (244)
T ss_pred HHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcC
Confidence 45789999998 48988876 77999999988775
No 135
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=79.97 E-value=18 Score=33.73 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=27.5
Q ss_pred CHHHHHHHHHhC--CCCEEEE-ccCCHHHHHHHhhCC
Q 025657 216 NWKDVKWLQTIT--SLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 216 tW~dl~wlr~~~--~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
.|+.++++++.+ +.||+.= ||.++++|.++++.|
T Consensus 270 ~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~g 306 (353)
T cd04735 270 NQTIMELVKERIAGRLPLIAVGSINTPDDALEALETG 306 (353)
T ss_pred hHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcC
Confidence 467778888887 7899987 567999999998754
No 136
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=79.68 E-value=10 Score=37.26 Aligned_cols=109 Identities=18% Similarity=0.259 Sum_probs=65.3
Q ss_pred hhcccceeccccC-CCCCCccceeec-CcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHh
Q 025657 45 AFSRILFRPRILR-DVSKIDMTTTVL-GFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS 122 (249)
Q Consensus 45 af~~~~l~pr~l~-~v~~~d~st~ll-G~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~ 122 (249)
-|+++.|+|..-. ..+++|++|.+- ...+..||+-|||.... |-.+|.+-+.+|-.-++.. +.+.|+..+
T Consensus 23 tfddv~l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt------~~~lA~Ama~aGGiGfI~~--~as~E~q~~ 94 (505)
T PLN02274 23 TYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVT------ESDMAIAMAALGGIGIVHY--NNTAEEQAA 94 (505)
T ss_pred CccceEecccccCcCCcccccccccccccCcCCCEeccCCcccc------hHHHHHHHHhCCCeEEEcC--CCCHHHHHH
Confidence 4999999998543 235678887664 35677999999986542 5566677777765546653 466776643
Q ss_pred c----C--CCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeec
Q 025657 123 T----G--PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVD 161 (249)
Q Consensus 123 ~----~--~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD 161 (249)
. . ....--.+.......-..+.++...+.++..++|+-|
T Consensus 95 ~Irkvk~~~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~ 139 (505)
T PLN02274 95 IVRKAKSRRVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTET 139 (505)
T ss_pred HHHHhhcccccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeC
Confidence 2 1 1000011111223333344556667788988888643
No 137
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=79.68 E-value=48 Score=31.95 Aligned_cols=84 Identities=15% Similarity=0.190 Sum_probs=53.5
Q ss_pred eecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHh-------cCC-Ccee-EEEcccc-
Q 025657 67 TVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS-------TGP-GIRF-FQLYVTK- 136 (249)
Q Consensus 67 ~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~-------~~~-~~~w-fQlY~~~- 136 (249)
++||. ..||+-+||+. +. ....++.|..++|..-++++.+ .|+|+|.+ ..+ +.+| +.|....
T Consensus 8 ~~lgi--ryPii~gpMa~-Gi----ss~eLVaAvs~AGgLG~lgag~-l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~ 79 (418)
T cd04742 8 EDYGL--RYAYVAGAMAR-GI----ASAELVVAMGKAGMLGFFGAGG-LPLDEVEQAIERIQAALGNGEPYGVNLIHSPD 79 (418)
T ss_pred HHhCC--CccEECCcccC-CC----CCHHHHHHHHhCCCeeeecCCC-CCHHHHHHHHHHHHHhccCCCCeEEeeecCCC
Confidence 34443 68999999872 12 2346888889999888888654 56666632 112 2233 5555433
Q ss_pred ChHHHHHHHHHHHHcCCcEEEE
Q 025657 137 HRNVDAQLVKRAERAGFKAIAL 158 (249)
Q Consensus 137 d~~~~~~li~rA~~aG~~alvv 158 (249)
+.+...++++-+.+.|++.+..
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~ 101 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEA 101 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEe
Confidence 4444567888888999987543
No 138
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=79.30 E-value=24 Score=32.66 Aligned_cols=143 Identities=22% Similarity=0.213 Sum_probs=76.8
Q ss_pred cccccccCC-ChhhHHHHHHHHhcC-CcEE---ecCCCCCCHH----------HH----HhcCCCceeEEEccccChHHH
Q 025657 81 PTAFQKMAH-PEGECATARAASAAG-TIMT---LSSWATSSVE----------EV----SSTGPGIRFFQLYVTKHRNVD 141 (249)
Q Consensus 81 P~g~~~l~h-~~gE~~~AraA~~~g-i~~~---lss~ss~sle----------ei----a~~~~~~~wfQlY~~~d~~~~ 141 (249)
+++...... +++....++...+.+ .-++ +|+-.+.... +| .+...-|.+..|-+ +.+.+
T Consensus 98 ~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P--~~~di 175 (310)
T COG0167 98 NIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAP--NITDI 175 (310)
T ss_pred ceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCC--CHHHH
Confidence 444444332 334457777777777 3333 3333222222 22 22223467888865 88888
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCch-hhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHH
Q 025657 142 AQLVKRAERAGFKAIALTVDTPRLGRRE-ADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 220 (249)
Q Consensus 142 ~~li~rA~~aG~~alvvTvD~p~~g~Re-~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl 220 (249)
.++.+.|+++|+.+|++|==+. .|. -|+... .| ..++- .+.+ ++..+ .+..-.-|
T Consensus 176 ~~iA~~~~~~g~Dgl~~~NT~~---~~~~id~~~~--~~---~~~~~----~GGL---SG~~i---------kp~al~~v 231 (310)
T COG0167 176 DEIAKAAEEAGADGLIAINTTK---SGMKIDLETK--KP---VLANE----TGGL---SGPPL---------KPIALRVV 231 (310)
T ss_pred HHHHHHHHHcCCcEEEEEeecc---cccccccccc--cc---ccCcC----CCCc---Ccccc---------hHHHHHHH
Confidence 8999999999999998863221 121 111111 01 00000 0000 00000 02233456
Q ss_pred HHHHHhCC--CCEE-EEccCCHHHHHHHhhCC
Q 025657 221 KWLQTITS--LPIL-VKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 221 ~wlr~~~~--lPiv-lKGIl~~eDA~~A~~~~ 249 (249)
+.++++.+ .||| +=||.|.|||..=+.+|
T Consensus 232 ~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aG 263 (310)
T COG0167 232 AELYKRLGGDIPIIGVGGIETGEDALEFILAG 263 (310)
T ss_pred HHHHHhcCCCCcEEEecCcCcHHHHHHHHHcC
Confidence 66777766 8887 77899999998766655
No 139
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=79.23 E-value=6.8 Score=33.84 Aligned_cols=108 Identities=11% Similarity=0.022 Sum_probs=60.7
Q ss_pred EccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhh-H-hhh
Q 025657 132 LYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS-Y-VAN 209 (249)
Q Consensus 132 lY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~ 209 (249)
+.-..+.+...++++.+.+.|++.+=||.+++..-..-+.++..+.-+-.+....+...+ ...... . ..-
T Consensus 15 v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~--------~~~~a~~aGA~f 86 (206)
T PRK09140 15 ILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPE--------QVDRLADAGGRL 86 (206)
T ss_pred EEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHH--------HHHHHHHcCCCE
Confidence 333457788888999999999999999998886544555666555321111111111100 000000 0 001
Q ss_pred hcCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 210 QIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 210 ~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
.+.|..+-+-++. +... +..++-|+++++|+..|.+.|
T Consensus 87 ivsp~~~~~v~~~-~~~~-~~~~~~G~~t~~E~~~A~~~G 124 (206)
T PRK09140 87 IVTPNTDPEVIRR-AVAL-GMVVMPGVATPTEAFAALRAG 124 (206)
T ss_pred EECCCCCHHHHHH-HHHC-CCcEEcccCCHHHHHHHHHcC
Confidence 1223333333444 4444 456667999999999999876
No 140
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=79.20 E-value=3 Score=37.95 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHhCCCCEE---EEccCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITSLPIL---VKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPiv---lKGIl~~eDA~~A~~~~ 249 (249)
..+|+-|+.+++..+.||| .=||.+|+||.++.+.|
T Consensus 180 ~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~G 218 (283)
T cd04727 180 QAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLG 218 (283)
T ss_pred CCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcC
Confidence 5689999999999999996 77899999999999886
No 141
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=78.82 E-value=24 Score=32.26 Aligned_cols=165 Identities=18% Similarity=0.223 Sum_probs=95.0
Q ss_pred cccccceeeccccccccCCChh-hH---HHHHHHHhcCCcEEecCCCCCCHHHHHhcC-C--CceeEEEcc---ccChHH
Q 025657 71 FNISMPIMIAPTAFQKMAHPEG-EC---ATARAASAAGTIMTLSSWATSSVEEVSSTG-P--GIRFFQLYV---TKHRNV 140 (249)
Q Consensus 71 ~~~~~Pi~iaP~g~~~l~h~~g-E~---~~AraA~~~gi~~~lss~ss~sleeia~~~-~--~~~wfQlY~---~~d~~~ 140 (249)
.+..+|++|.-.-+..- .-.| +. .+-..|.+.++|++|-.-=..+.|++.++. + ...+|=... -.|-..
T Consensus 39 ~e~~sPvIiq~S~g~~~-y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg~~~~~~~~ai~~GFsSvMiDgS~~~~eENi~~ 117 (286)
T COG0191 39 EEEKSPVIIQFSEGAAK-YAGGADSLAHMVKALAEKYGVPVALHLDHGASFEDCKQAIRAGFSSVMIDGSHLPFEENIAI 117 (286)
T ss_pred HHhCCCEEEEecccHHH-HhchHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHhcCCceEEecCCcCCHHHHHHH
Confidence 34567888765322221 1222 21 445567789999999876666899987652 1 223333221 235678
Q ss_pred HHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccc----cc---ccc-----ccCCCCCCCCchhhhHhh
Q 025657 141 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK----NY---EGL-----YIGKMDKTDDSGLASYVA 208 (249)
Q Consensus 141 ~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~----~~---~~~-----~~~~~~~~~~~~~~~~~~ 208 (249)
+++.+++|.+.|.. |-.-.-..|.-|.+... ..-|..++-. .+ .+. .+++. .+...
T Consensus 118 tkevv~~ah~~gvs---VEaElG~~GG~Edg~~~-~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~-----HG~Yk--- 185 (286)
T COG0191 118 TKEVVEFAHAYGVS---VEAELGTLGGEEDGVVL-YTDPADLTDPEEALEFVERTGIDALAAAIGNV-----HGVYK--- 185 (286)
T ss_pred HHHHHHHHHHcCCc---EEEEeccccCccCCccc-ccchhhhCCHHHHHHHHhccCcceeeeecccc-----ccCCC---
Confidence 99999999999853 34555556666654221 1111111100 00 000 11111 01110
Q ss_pred hhcCCCCCHHHHHHHHHhCCCCEEEEccC--CHHHHHHHhhCC
Q 025657 209 NQIDRSLNWKDVKWLQTITSLPILVKGVL--TAEDGSKLLSKE 249 (249)
Q Consensus 209 ~~~~~~~tW~dl~wlr~~~~lPivlKGIl--~~eDA~~A~~~~ 249 (249)
.-.|.++.+-|+.+++.+++|||+-|=. ..||-++|++.|
T Consensus 186 -~~~p~L~~~~L~~i~~~~~~PlVlHGgSGip~~eI~~aI~~G 227 (286)
T COG0191 186 -PGNPKLDFDRLKEIQEAVSLPLVLHGGSGIPDEEIREAIKLG 227 (286)
T ss_pred -CCCCCCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHhC
Confidence 1246799999999999999999999853 567888888776
No 142
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=78.65 E-value=4.1 Score=35.08 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
..+|+.++.+++.++.|+++. ||-++|||+++++.|
T Consensus 59 ~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~G 95 (234)
T cd04732 59 PVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLG 95 (234)
T ss_pred CCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcC
Confidence 456889999999999999997 599999999998876
No 143
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=78.63 E-value=14 Score=31.50 Aligned_cols=82 Identities=15% Similarity=0.096 Sum_probs=49.1
Q ss_pred ceeeccccccccCCChhhHHHHHHHHhcCCcEE-----ecCCCC-CCHH--HHHhcC--CCceeEEEccccChHHHHHHH
Q 025657 76 PIMIAPTAFQKMAHPEGECATARAASAAGTIMT-----LSSWAT-SSVE--EVSSTG--PGIRFFQLYVTKHRNVDAQLV 145 (249)
Q Consensus 76 Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~-----lss~ss-~sle--eia~~~--~~~~wfQlY~~~d~~~~~~li 145 (249)
|+++|||-.. .++..=+.+++.|.-.+ .+..-. ..-+ ...... +.+...||.- .+.+...+..
T Consensus 1 ~~~~aPm~~~------~~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g-~~~~~~~~aa 73 (231)
T cd02801 1 KLILAPMVGV------TDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGG-SDPETLAEAA 73 (231)
T ss_pred CeEeCCCCCC------cCHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcC-CCHHHHHHHH
Confidence 5788895443 35666666666663332 222111 1111 111122 2456799963 4566667888
Q ss_pred HHHHHcCCcEEEEeecCCC
Q 025657 146 KRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 146 ~rA~~aG~~alvvTvD~p~ 164 (249)
++++++||.+|=|.+-+|.
T Consensus 74 ~~~~~aG~d~ieln~g~p~ 92 (231)
T cd02801 74 KIVEELGADGIDLNMGCPS 92 (231)
T ss_pred HHHHhcCCCEEEEeCCCCH
Confidence 9999999999988887754
No 144
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=78.62 E-value=8.1 Score=37.75 Aligned_cols=69 Identities=16% Similarity=0.290 Sum_probs=52.1
Q ss_pred hhcccceeccccCC-C-CCCccceeecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHh
Q 025657 45 AFSRILFRPRILRD-V-SKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS 122 (249)
Q Consensus 45 af~~~~l~pr~l~~-v-~~~d~st~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~ 122 (249)
.|+++.|+|..-.- . +++|++|. +..++..||+-|||--. -|..+|.+-++.|-.-++-. +.++|+-++
T Consensus 13 tfddvll~p~~~~~~~~~~v~~~t~-~~~~l~~P~vsa~mdtv------Te~~MAi~~A~~GGigvIh~--n~~i~~qae 83 (475)
T TIGR01303 13 TYNDVFMVPSRSEVGSRFDVDLSTA-DGTGTTIPLVVANMTAV------AGRRMAETVARRGGIVILPQ--DLPIPAVKQ 83 (475)
T ss_pred CccceEEccCccCccCCCceeeccc-ccCccccceeeccchhh------HHHHHHHHHHHCCCEEEEeC--CCCHHHHHH
Confidence 49999999986542 2 37788888 66899999999995432 47788888777777777755 678887764
No 145
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=78.42 E-value=27 Score=32.75 Aligned_cols=38 Identities=16% Similarity=0.018 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHH----HHhC------CCCEEEEccC--CHHHHHHHhhCC
Q 025657 212 DRSLNWKDVKWL----QTIT------SLPILVKGVL--TAEDGSKLLSKE 249 (249)
Q Consensus 212 ~~~~tW~dl~wl----r~~~------~lPivlKGIl--~~eDA~~A~~~~ 249 (249)
.|.++|+-|+.| ++.+ +.|||+=|-. ..||-++|+++|
T Consensus 219 ~p~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHGgSG~~~e~i~kai~~G 268 (345)
T cd00946 219 NVKLQPEILGEHQDYVREKLGLADDKPLYFVFHGGSGSTKEEIREAISYG 268 (345)
T ss_pred CCccCHHHHHHHHHHHHHhhccccCCCCCEEEeCCCCCCHHHHHHHHHcC
Confidence 478999999999 5555 6899999985 568888898887
No 146
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=78.38 E-value=31 Score=30.96 Aligned_cols=156 Identities=13% Similarity=0.180 Sum_probs=82.4
Q ss_pred cCcccccceeecccc---ccc-cCC---ChhhHHHHHHH-HhcCCcEEecCCCCC----CHHHHH----hcCCCceeEEE
Q 025657 69 LGFNISMPIMIAPTA---FQK-MAH---PEGECATARAA-SAAGTIMTLSSWATS----SVEEVS----STGPGIRFFQL 132 (249)
Q Consensus 69 lG~~~~~Pi~iaP~g---~~~-l~h---~~gE~~~AraA-~~~gi~~~lss~ss~----sleeia----~~~~~~~wfQl 132 (249)
+|.++|=|+.=.|+= .++ |.| .+.=+.+.+.. ++.++|.++=++.+. .+|... +++-. --.=.
T Consensus 48 lGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvd-gviip 126 (263)
T CHL00200 48 LGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVK-GLIIP 126 (263)
T ss_pred ECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCe-EEEec
Confidence 799999999988852 222 111 11112333333 447888666555542 555443 33211 11111
Q ss_pred ccccChHHHHHHHHHHHHcCCcEEEEe-ecCCCCCCchhhhhc---cCCCCCccccccccccccCCCCCCCCchhhhHhh
Q 025657 133 YVTKHRNVDAQLVKRAERAGFKAIALT-VDTPRLGRREADIKN---RFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVA 208 (249)
Q Consensus 133 Y~~~d~~~~~~li~rA~~aG~~alvvT-vD~p~~g~Re~d~r~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (249)
.+ ..+...++++.+++.|...+.+- -.++ -.|-+.+-. ||-.- ++ ..+. .+ ...
T Consensus 127 DL--P~ee~~~~~~~~~~~gi~~I~lv~PtT~--~eri~~i~~~a~gFIY~--vS---~~Gv-------TG---~~~--- 184 (263)
T CHL00200 127 DL--PYEESDYLISVCNLYNIELILLIAPTSS--KSRIQKIARAAPGCIYL--VS---TTGV-------TG---LKT--- 184 (263)
T ss_pred CC--CHHHHHHHHHHHHHcCCCEEEEECCCCC--HHHHHHHHHhCCCcEEE--Ec---CCCC-------CC---CCc---
Confidence 11 23567788999999998776543 2222 234333321 22110 00 0010 00 000
Q ss_pred hhcCCCCCHHHHHHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 209 NQIDRSLNWKDVKWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 209 ~~~~~~~tW~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
.. +.--=+-++.+|+.+++||.|= ||-++|+|+.+.++|
T Consensus 185 -~~-~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~G 224 (263)
T CHL00200 185 -EL-DKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWN 224 (263)
T ss_pred -cc-cHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcC
Confidence 00 0001245789999999999994 799999999988874
No 147
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=77.45 E-value=3.4 Score=37.68 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHhCCCCEE---EEccCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITSLPIL---VKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPiv---lKGIl~~eDA~~A~~~~ 249 (249)
..+++-|+++++..++||| .=||-+|+||.++.+.|
T Consensus 183 ~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melG 221 (287)
T TIGR00343 183 RVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLG 221 (287)
T ss_pred CCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcC
Confidence 4678999999999999997 78899999999999887
No 148
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=77.29 E-value=3.7 Score=37.54 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHhCCCCEE---EEccCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITSLPIL---VKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPiv---lKGIl~~eDA~~A~~~~ 249 (249)
..+|+-|+.+++..++||| .=||.+|+||.++.+.|
T Consensus 189 ~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~G 227 (293)
T PRK04180 189 QAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLG 227 (293)
T ss_pred CCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhC
Confidence 4689999999999999996 67799999999999886
No 149
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=77.08 E-value=8.2 Score=37.75 Aligned_cols=107 Identities=10% Similarity=0.134 Sum_probs=64.2
Q ss_pred hhcccceeccccCC-C-CCCccceeecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHh
Q 025657 45 AFSRILFRPRILRD-V-SKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS 122 (249)
Q Consensus 45 af~~~~l~pr~l~~-v-~~~d~st~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~ 122 (249)
.|+++.|+|..-.- . +++|++|+ ++..+..||+-|||-.. .|..+|.+-++.|-.-++- -+.++++.++
T Consensus 14 tfddvll~p~~~~~~~~~~v~~~t~-~~~~l~~Pi~sa~Mdtv------t~~~MAiaLAr~GGiGvih--~nl~~~~q~~ 84 (479)
T PRK07807 14 TYDDVFLVPSRSDVGSRFDVDLSTA-DGTGTTIPLVVANMTAV------AGRRMAETVARRGGLVVLP--QDIPIDVVAE 84 (479)
T ss_pred CccceEecccccCccCCCceecccC-CCCccccceeecCCcch------hHHHHHHHHHHCCCceEee--CCCCHHHHHH
Confidence 49999999987653 2 37899997 58899999999996543 2667777777776333332 2456665543
Q ss_pred cC---C-Ccee-EEEccccChHHHHHHHHHHHHcCCcEEEEee
Q 025657 123 TG---P-GIRF-FQLYVTKHRNVDAQLVKRAERAGFKAIALTV 160 (249)
Q Consensus 123 ~~---~-~~~w-fQlY~~~d~~~~~~li~rA~~aG~~alvvTv 160 (249)
.- . .... -.+.......-..+.+++..+.++..++|+-
T Consensus 85 ~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD 127 (479)
T PRK07807 85 VVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVD 127 (479)
T ss_pred HHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEEC
Confidence 21 1 1111 0111112222344555566677888877753
No 150
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=76.29 E-value=25 Score=31.52 Aligned_cols=77 Identities=22% Similarity=0.256 Sum_probs=53.2
Q ss_pred HHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhc
Q 025657 95 ATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKN 174 (249)
Q Consensus 95 ~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~ 174 (249)
.+.+++++.|.|+.||+.-+.+++|+..+ ++..++.|.+-|+|+-= |.+
T Consensus 123 ~LL~~~a~~gkPVilk~G~~~t~~e~~~A---------------------ve~i~~~Gn~~i~l~~r----G~s------ 171 (260)
T TIGR01361 123 ELLKEVGKQGKPVLLKRGMGNTIEEWLYA---------------------AEYILSSGNGNVILCER----GIR------ 171 (260)
T ss_pred HHHHHHhcCCCcEEEeCCCCCCHHHHHHH---------------------HHHHHHcCCCcEEEEEC----CCC------
Confidence 68888888899999998877788888765 45556788877777421 110
Q ss_pred cCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEE
Q 025657 175 RFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV 233 (249)
Q Consensus 175 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivl 233 (249)
.|. |. ....++|.-|..||+.+++||++
T Consensus 172 ~y~-~~------------------------------~~~~~dl~~i~~lk~~~~~pV~~ 199 (260)
T TIGR01361 172 TFE-KA------------------------------TRNTLDLSAVPVLKKETHLPIIV 199 (260)
T ss_pred CCC-CC------------------------------CcCCcCHHHHHHHHHhhCCCEEE
Confidence 110 10 01246788899999988999987
No 151
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=75.95 E-value=38 Score=31.23 Aligned_cols=114 Identities=18% Similarity=0.134 Sum_probs=62.1
Q ss_pred hHHHHHHHHhcCCcEE-ecC-CCCCC-----HHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 025657 93 ECATARAASAAGTIMT-LSS-WATSS-----VEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRL 165 (249)
Q Consensus 93 E~~~AraA~~~gi~~~-lss-~ss~s-----leeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~ 165 (249)
....++++.++|+.++ +++ .++.. ++.|.+..|. ..+-. ..-.+.+..+.+.++|+.+|++++ .|..
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~-v~Vi~----G~v~t~~~A~~l~~aGaD~I~vg~-g~G~ 168 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPN-VDVIA----GNVVTAEAARDLIDAGADGVKVGI-GPGS 168 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCC-ceEEE----CCCCCHHHHHHHHhcCCCEEEECC-CCCc
Confidence 4577888888899875 433 22221 3344444442 11111 222344566777889999999865 2221
Q ss_pred CCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHH---hCCCCEEE-EccCCHHH
Q 025657 166 GRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQT---ITSLPILV-KGVLTAED 241 (249)
Q Consensus 166 g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~---~~~lPivl-KGIl~~eD 241 (249)
.-+.+. ..+. ..-+|.-|..+++ ..+.|||. =||.++.|
T Consensus 169 ~~~t~~---------------~~g~----------------------g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~d 211 (325)
T cd00381 169 ICTTRI---------------VTGV----------------------GVPQATAVADVAAAARDYGVPVIADGGIRTSGD 211 (325)
T ss_pred Ccccce---------------eCCC----------------------CCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHH
Confidence 111000 0000 0113444444443 45789875 37999999
Q ss_pred HHHHhhCC
Q 025657 242 GSKLLSKE 249 (249)
Q Consensus 242 A~~A~~~~ 249 (249)
+.+|+..|
T Consensus 212 i~kAla~G 219 (325)
T cd00381 212 IVKALAAG 219 (325)
T ss_pred HHHHHHcC
Confidence 99999876
No 152
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=75.69 E-value=25 Score=29.97 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=27.8
Q ss_pred CHHHHHHHHHh--CCCCEEE-EccCCHHHHHHHhhCC
Q 025657 216 NWKDVKWLQTI--TSLPILV-KGVLTAEDGSKLLSKE 249 (249)
Q Consensus 216 tW~dl~wlr~~--~~lPivl-KGIl~~eDA~~A~~~~ 249 (249)
+.+.+..+++. .+.|++. =||.++||++++.++|
T Consensus 158 ~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~G 194 (217)
T cd00331 158 DLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAG 194 (217)
T ss_pred CHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcC
Confidence 34778888887 5689884 6999999999999876
No 153
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=75.04 E-value=22 Score=25.77 Aligned_cols=55 Identities=25% Similarity=0.306 Sum_probs=38.1
Q ss_pred CChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCC
Q 025657 89 HPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGR 167 (249)
Q Consensus 89 h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~ 167 (249)
|.|||+ +|+.++..|+-.+-+|.+ .......+++++..+ .|+ -+++|.|.|-...
T Consensus 19 s~DGe~-ia~~~~~~G~~~iRGSs~---------------------rgg~~Alr~~~~~lk-~G~-~~~itpDGPrGP~ 73 (74)
T PF04028_consen 19 SRDGEL-IARVLERFGFRTIRGSSS---------------------RGGARALREMLRALK-EGY-SIAITPDGPRGPR 73 (74)
T ss_pred CcCHHH-HHHHHHHcCCCeEEeCCC---------------------CcHHHHHHHHHHHHH-CCC-eEEEeCCCCCCCC
Confidence 788887 678888999988877711 012344556766666 566 6799999987543
No 154
>PRK08227 autoinducer 2 aldolase; Validated
Probab=74.28 E-value=19 Score=32.52 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEE
Q 025657 95 ATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIAL 158 (249)
Q Consensus 95 ~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvv 158 (249)
..||.|.++|.=++=-.+...++++|.+++|-|.-+.==...+.+...++++.|-++|+..+++
T Consensus 162 ~aaRiaaELGADiVK~~y~~~~f~~vv~a~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~ 225 (264)
T PRK08227 162 LATRIAAEMGAQIIKTYYVEEGFERITAGCPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDM 225 (264)
T ss_pred HHHHHHHHHcCCEEecCCCHHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeee
Confidence 4455555555443322222235666665544322221111113334456666666677766543
No 155
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=74.17 E-value=44 Score=30.77 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
..|+..+.||+.++.||++=| |.+++||+.+++.|
T Consensus 279 ~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g 314 (338)
T cd04733 279 YFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASG 314 (338)
T ss_pred hhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcC
Confidence 456778899999999997665 55899999999865
No 156
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=73.93 E-value=2.8 Score=38.21 Aligned_cols=149 Identities=19% Similarity=0.253 Sum_probs=81.1
Q ss_pred HHHHHHHHhcCCcEEecCCCCC----CHHHH-------HhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecC
Q 025657 94 CATARAASAAGTIMTLSSWATS----SVEEV-------SSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDT 162 (249)
Q Consensus 94 ~~~AraA~~~gi~~~lss~ss~----sleei-------a~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~ 162 (249)
.++.+||++.+.|.++...-+. +++.+ ++....|.+++| |.....+.+.+|-++||..+++ |.
T Consensus 31 ~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValHL----DH~~~~e~i~~ai~~GftSVM~--Dg 104 (287)
T PF01116_consen 31 RAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALHL----DHGKDFEDIKRAIDAGFTSVMI--DG 104 (287)
T ss_dssp HHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEEE----EEE-SHHHHHHHHHHTSSEEEE--E-
T ss_pred HHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEeec----ccCCCHHHHHHHHHhCcccccc--cC
Confidence 4899999999999998653321 23333 223456788998 8888899999999999999865 54
Q ss_pred CCCCCchhhhhcc---------CCCCCccccccccccccC--CCC--C---CCCchhhhHhhh-----------------
Q 025657 163 PRLGRREADIKNR---------FVLPPHLTLKNYEGLYIG--KMD--K---TDDSGLASYVAN----------------- 209 (249)
Q Consensus 163 p~~g~Re~d~r~~---------~~~p~~~~~~~~~~~~~~--~~~--~---~~~~~~~~~~~~----------------- 209 (249)
.....-| +++.- +.++-.--+..+.+.+-+ ... . .++.....++..
T Consensus 105 S~l~~ee-Ni~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y 183 (287)
T PF01116_consen 105 SALPFEE-NIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMY 183 (287)
T ss_dssp TTS-HHH-HHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSB
T ss_pred CcCCHHH-HHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCcccccc
Confidence 4433222 22210 000000000000000000 000 0 000111112110
Q ss_pred h--cCCCCCHHHHHHHHHhC-CCCEEEEccC--CHHHHHHHhhCC
Q 025657 210 Q--IDRSLNWKDVKWLQTIT-SLPILVKGVL--TAEDGSKLLSKE 249 (249)
Q Consensus 210 ~--~~~~~tW~dl~wlr~~~-~lPivlKGIl--~~eDA~~A~~~~ 249 (249)
. ..|.++++-|+.|++.. +.|||+=|=. ..||-++|++.|
T Consensus 184 ~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~G 228 (287)
T PF01116_consen 184 KGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKNG 228 (287)
T ss_dssp SSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHTT
T ss_pred CCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHcC
Confidence 1 24689999999999999 9999999974 456788888776
No 157
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=73.89 E-value=22 Score=35.36 Aligned_cols=74 Identities=23% Similarity=0.309 Sum_probs=52.7
Q ss_pred eeEEEccccChH----HHHHHHHHHHHcCCcEEEEe-ecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCch
Q 025657 128 RFFQLYVTKHRN----VDAQLVKRAERAGFKAIALT-VDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSG 202 (249)
Q Consensus 128 ~wfQlY~~~d~~----~~~~li~rA~~aG~~alvvT-vD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 202 (249)
.|||+|...-++ ...++++++++.|+..|++| +|.-. . .+
T Consensus 423 ~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DG--t-----~~---------------------------- 467 (538)
T PLN02617 423 AWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDG--Q-----GK---------------------------- 467 (538)
T ss_pred eEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeeccccc--c-----cc----------------------------
Confidence 489999987554 33589999999999998886 33211 0 01
Q ss_pred hhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhh
Q 025657 203 LASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLS 247 (249)
Q Consensus 203 ~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~ 247 (249)
..+-+-++.+++.++.|||.=| +-++||-..+.+
T Consensus 468 -----------G~d~~l~~~v~~~~~ipviasGG~g~~~d~~~~~~ 502 (538)
T PLN02617 468 -----------GFDIELVKLVSDAVTIPVIASSGAGTPEHFSDVFS 502 (538)
T ss_pred -----------CcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHh
Confidence 1223445678888999999776 999999888775
No 158
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=73.84 E-value=84 Score=29.94 Aligned_cols=82 Identities=11% Similarity=0.037 Sum_probs=49.7
Q ss_pred cc-ccceeeccccccccCCChhhH-HHHHHHHhcCCcEE---ecCCCC-----------CC---HHHH----HhcCCCce
Q 025657 72 NI-SMPIMIAPTAFQKMAHPEGEC-ATARAASAAGTIMT---LSSWAT-----------SS---VEEV----SSTGPGIR 128 (249)
Q Consensus 72 ~~-~~Pi~iaP~g~~~l~h~~gE~-~~AraA~~~gi~~~---lss~ss-----------~s---leei----a~~~~~~~ 128 (249)
++ ..|+++|=++. +...|. .+++-+.+.|.-++ +|.-.. .. +++| .+...-|.
T Consensus 110 ~~~~~pvIaSi~~~----~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv 185 (385)
T PLN02495 110 EYPDRILIASIMEE----YNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPV 185 (385)
T ss_pred hCCCCcEEEEccCC----CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCce
Confidence 44 45888874332 233443 78888888875444 332111 11 3333 22233578
Q ss_pred eEEEccccChHHHHHHHHHHHHcCCcEEEEe
Q 025657 129 FFQLYVTKHRNVDAQLVKRAERAGFKAIALT 159 (249)
Q Consensus 129 wfQlY~~~d~~~~~~li~rA~~aG~~alvvT 159 (249)
|..|-+ |-....++.+.|+++|+.+|+++
T Consensus 186 ~vKLsP--n~t~i~~ia~aa~~~Gadgi~li 214 (385)
T PLN02495 186 WAKMTP--NITDITQPARVALKSGCEGVAAI 214 (385)
T ss_pred EEEeCC--ChhhHHHHHHHHHHhCCCEEEEe
Confidence 999975 34347789999999999999875
No 159
>PLN02858 fructose-bisphosphate aldolase
Probab=73.68 E-value=46 Score=36.89 Aligned_cols=148 Identities=14% Similarity=0.142 Sum_probs=79.6
Q ss_pred HHHHHHHhcCCcEEecCCCCC----CHH------HHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 95 ATARAASAAGTIMTLSSWATS----SVE------EVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 95 ~~AraA~~~gi~~~lss~ss~----sle------eia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
++.+||++.+.|.++...-.. .++ ..++...-|..+.| |+....+.+.+|-++||..+++ |...
T Consensus 1129 avi~aAe~~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHL----DHg~~~~~i~~ai~~Gf~SVM~--DgS~ 1202 (1378)
T PLN02858 1129 AVVAAAEAEKSPAILQVHPGALKQGGIPLVSCCIAAAEQASVPITVHF----DHGTSKHELLEALELGFDSVMV--DGSH 1202 (1378)
T ss_pred HHHHHHHHhCCCEEEECCccHHhhcCHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHhCCCEEEE--eCCC
Confidence 788888888888888654221 222 22222334455555 7777778888888899988765 4444
Q ss_pred CCCchhhhhcc---------CCCCCccccccccccccC----CCC--CCCCchhhhHhhh----------------hc--
Q 025657 165 LGRREADIKNR---------FVLPPHLTLKNYEGLYIG----KMD--KTDDSGLASYVAN----------------QI-- 211 (249)
Q Consensus 165 ~g~Re~d~r~~---------~~~p~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~----------------~~-- 211 (249)
... |.+++.- +.++-.--+..+.+.+.+ ... -.+.....+|+.. ..
T Consensus 1203 l~~-eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~ 1281 (1378)
T PLN02858 1203 LSF-TENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFIDETGIDALAVCIGNVHGKYPAS 1281 (1378)
T ss_pred CCH-HHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccCCCCHHHHHHHHHhcCCcEEeeecccccccCCCC
Confidence 433 2222210 100000000000000000 000 0000011111111 11
Q ss_pred CCCCCHHHHHHHHHhC---CCCEEEEccC--CHHHHHHHhhCC
Q 025657 212 DRSLNWKDVKWLQTIT---SLPILVKGVL--TAEDGSKLLSKE 249 (249)
Q Consensus 212 ~~~~tW~dl~wlr~~~---~lPivlKGIl--~~eDA~~A~~~~ 249 (249)
.|.++|+-|+.|++.. +.|+|+-|=. ..||-++|+++|
T Consensus 1282 ~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~~~~~~~ai~~G 1324 (1378)
T PLN02858 1282 GPNLRLDLLKELRALSSKKGVLLVLHGASGLPESLIKECIENG 1324 (1378)
T ss_pred CCccCHHHHHHHHHHhcCCCCcEEEeCCCCCCHHHHHHHHHcC
Confidence 3679999999999999 7999999854 367788888876
No 160
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=73.64 E-value=71 Score=31.08 Aligned_cols=84 Identities=19% Similarity=0.223 Sum_probs=52.9
Q ss_pred eecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhc-------CC-Ccee-EEEcccc-
Q 025657 67 TVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSST-------GP-GIRF-FQLYVTK- 136 (249)
Q Consensus 67 ~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~-------~~-~~~w-fQlY~~~- 136 (249)
++|| +..|++-+||+. +.. ...++.+..++|..-.+++.+ .|+|+|.+. .+ ++.| +.|..+.
T Consensus 13 ~~lg--iryPiiqgpMa~-GiS----s~eLVaAVs~AGgLG~lgag~-l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~ 84 (444)
T TIGR02814 13 EDYG--VRYAYVAGAMAN-GIA----SAELVIAMGRAGILGFFGAGG-LPLEEVEQAIHRIQQALPGGPAYGVNLIHSPS 84 (444)
T ss_pred HHhC--CCCcEECccccC-CCC----CHHHHHHHHhCCceeeeCCCC-CCHHHHHHHHHHHHHhcCCCCceEEEecccCC
Confidence 3454 467999999872 222 346888888999888888644 567766432 22 2424 5565443
Q ss_pred ChHHHHHHHHHHHHcCCcEEEE
Q 025657 137 HRNVDAQLVKRAERAGFKAIAL 158 (249)
Q Consensus 137 d~~~~~~li~rA~~aG~~alvv 158 (249)
+.+...++++-+.+.|++.+..
T Consensus 85 ~~~~e~~~v~l~l~~~V~~vea 106 (444)
T TIGR02814 85 DPALEWGLVDLLLRHGVRIVEA 106 (444)
T ss_pred CcccHHHHHHHHHHcCCCEEEe
Confidence 3344456777778889987644
No 161
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=73.49 E-value=20 Score=33.87 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHhCC--CCEEEE-ccCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTITS--LPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~~--lPivlK-GIl~~eDA~~A~~~~ 249 (249)
-+|+-|..+++..+ .||++= ||.+..|+.+|+..|
T Consensus 268 a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalG 305 (367)
T TIGR02708 268 AAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASG 305 (367)
T ss_pred cHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcC
Confidence 36888999988764 788886 699999999999876
No 162
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=73.27 E-value=14 Score=28.42 Aligned_cols=56 Identities=16% Similarity=0.301 Sum_probs=42.2
Q ss_pred CCcEEecCCCCCCHHHHHhcCC-----------CceeEEEccccChHHHHHHHHHHHHcCCcEEEEe
Q 025657 104 GTIMTLSSWATSSVEEVSSTGP-----------GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALT 159 (249)
Q Consensus 104 gi~~~lss~ss~sleeia~~~~-----------~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvT 159 (249)
+-.++.=+.....+|++.+..| ..-|+-+...-+++...+++++-+++|++.|+++
T Consensus 28 ~~~~v~~Nvp~~~l~~v~~ilPg~~~PTVs~l~~~~w~AV~~vv~~~~v~~~~~~Lk~~GA~~Ilv~ 94 (100)
T TIGR03455 28 GKVLLMMNVPRDNLDEVRALLPGLEGPTVSPLADEGWVAVHAVVDEKVVNELIDKLKAAGARDILVL 94 (100)
T ss_pred heeEEEEeCChhhHHHHHHhcCCCCCCCcCcCCCCCeEEEEEEEcHHHHHHHHHHHHHcCCCeEEEe
Confidence 3444444555667888776533 1249888888899999999999999999999875
No 163
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=73.03 E-value=6 Score=34.10 Aligned_cols=35 Identities=31% Similarity=0.387 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
.+.+-++.+++.+++||.++ ||-+.||++.+.+.|
T Consensus 59 ~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~G 94 (230)
T TIGR00007 59 VNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLG 94 (230)
T ss_pred CcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcC
Confidence 35677899999999999997 689999999999876
No 164
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=72.90 E-value=54 Score=29.69 Aligned_cols=36 Identities=11% Similarity=0.268 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
...++.++.+|+.++.||+.=| |.+++||+.+++.|
T Consensus 267 ~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g 303 (327)
T cd02803 267 GYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEG 303 (327)
T ss_pred chhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCC
Confidence 4567889999999999999866 55699999999863
No 165
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=72.81 E-value=44 Score=31.51 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
..|+.++.+|+.++.||++=| |.++++|..+++.|
T Consensus 292 ~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g 327 (382)
T cd02931 292 MYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEG 327 (382)
T ss_pred hhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 346678899999999999876 55999999999865
No 166
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=72.16 E-value=3.9 Score=29.81 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHhcCC-----------CceeEEEccccChHHHHHHHHHHHHcCCcEEEEe
Q 025657 111 SWATSSVEEVSSTGP-----------GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALT 159 (249)
Q Consensus 111 s~ss~sleeia~~~~-----------~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvT 159 (249)
+....++|++.+..| +.-|+=+...-+++...+++++.+++|++.|+++
T Consensus 11 Nvp~~~l~~v~~ilPg~~~PTVs~L~~~~w~AV~~vV~~~~~~~~~~~Lk~~GA~~Ilv~ 70 (75)
T PF08029_consen 11 NVPRESLEEVIKILPGLKSPTVSPLADEDWVAVHAVVPEKQVWDLMDKLKAAGASDILVL 70 (75)
T ss_dssp EEECCCHHHHHHHS--SSS-EEEE-SSTTEEEEEEEEECCCHHHHHHHHHCTT-EEEEEE
T ss_pred eCCHHHHHHHHHhCCCCCCCceeecCCCCEEEEEEEecHHHHHHHHHHHHHcCCCEEEEE
Confidence 344567888887544 2348777777788889999999999999999875
No 167
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=71.14 E-value=11 Score=36.93 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=27.2
Q ss_pred HHHHHHHHhC-CCCEEEEccCCHHHHHHHhhCC
Q 025657 218 KDVKWLQTIT-SLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 218 ~dl~wlr~~~-~lPivlKGIl~~eDA~~A~~~~ 249 (249)
+-++|||+.. +.|+|+=.|.+.|+|+.++++|
T Consensus 255 ~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G 287 (475)
T TIGR01303 255 SAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAG 287 (475)
T ss_pred HHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhC
Confidence 4589999987 6899883399999999999987
No 168
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=71.12 E-value=45 Score=30.97 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=26.5
Q ss_pred HHHHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 219 DVKWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 219 dl~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
..+.+|+.++.||+.= +|.+++|++.+++.|
T Consensus 267 ~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g 298 (353)
T cd02930 267 ATAKLKRAVDIPVIASNRINTPEVAERLLADG 298 (353)
T ss_pred HHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCC
Confidence 3578999999999977 567999999999865
No 169
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=70.29 E-value=16 Score=34.48 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 217 WKDVKWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 217 W~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
.+-|..+++..+.||++- ||.++.|+.+|+..|
T Consensus 278 ~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KALaLG 311 (361)
T cd04736 278 IEALAEIVAATYKPVLIDSGIRRGSDIVKALALG 311 (361)
T ss_pred HHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHHcC
Confidence 466788888889999999 899999999999876
No 170
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=69.83 E-value=34 Score=28.63 Aligned_cols=30 Identities=23% Similarity=0.124 Sum_probs=23.7
Q ss_pred ccChHHHHHHHHHHHHcCCcEEEEe-ecCCC
Q 025657 135 TKHRNVDAQLVKRAERAGFKAIALT-VDTPR 164 (249)
Q Consensus 135 ~~d~~~~~~li~rA~~aG~~alvvT-vD~p~ 164 (249)
..|...+.+.++.+.++|++.|=+. .|.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~ 37 (210)
T TIGR01163 7 SADFARLGEEVKAVEEAGADWIHVDVMDGHF 37 (210)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 3577888899999999999999876 45444
No 171
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=69.01 E-value=36 Score=29.86 Aligned_cols=128 Identities=13% Similarity=0.106 Sum_probs=65.6
Q ss_pred hhccCccchHHHHHHHHhhcccceeccccCCCC------CCccc-eeecCcccccceeeccccccccCCChhhH-HHHHH
Q 025657 28 YYASGAEDQWTLQENRNAFSRILFRPRILRDVS------KIDMT-TTVLGFNISMPIMIAPTAFQKMAHPEGEC-ATARA 99 (249)
Q Consensus 28 Y~~gGa~de~t~~~N~~af~~~~l~pr~l~~v~------~~d~s-t~llG~~~~~Pi~iaP~g~~~l~h~~gE~-~~Ara 99 (249)
-++||-+.-.++..=.+.|+=+.+.. +...-. .++.. +......+..|+..-++... ++.|. .+.+.
T Consensus 6 l~SGGKDS~lAl~~~~~~~~V~~L~~-~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~----~e~~~~~l~~~ 80 (222)
T TIGR00289 6 LYSGGKDSILALYKALEEHEVISLVG-VFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGE----EEKEVEDLAGQ 80 (222)
T ss_pred EecCcHHHHHHHHHHHHcCeeEEEEE-EcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCc----hhHHHHHHHHH
Confidence 46888888888776554443222221 111110 11111 11233344556554443321 34444 66677
Q ss_pred HHhcCCcEEecCCCCC------CHHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 025657 100 ASAAGTIMTLSSWATS------SVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLG 166 (249)
Q Consensus 100 A~~~gi~~~lss~ss~------sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g 166 (249)
.++.|+-.+++- +-. -+|.+++..+=...+-| |..|++...++ -++|++++++.|++..++
T Consensus 81 l~~~gv~~vv~G-dI~s~~qr~~~e~vc~~~gl~~~~PL-W~~d~~~l~e~----i~~Gf~aiIv~v~~~gL~ 147 (222)
T TIGR00289 81 LGELDVEALCIG-AIESNYQKSRIDKVCRELGLKSIAPL-WHADPEKLMYE----VAEKFEVIIVSVSAMGLD 147 (222)
T ss_pred HHHcCCCEEEEC-ccccHHHHHHHHHHHHHcCCEEeccc-cCCCHHHHHHH----HHcCCeEEEEEEccCCCC
Confidence 777786655532 222 25666654431122222 34677544333 389999999999987654
No 172
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=68.88 E-value=45 Score=28.84 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=27.8
Q ss_pred EEEccccChHHHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 130 FQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 130 fQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
+-+.-..|.+...++++...+.|++.|=||.++|.
T Consensus 7 v~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~ 41 (201)
T PRK06015 7 IPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPA 41 (201)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCcc
Confidence 33434457788889999999999999999998755
No 173
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=68.70 E-value=38 Score=33.22 Aligned_cols=117 Identities=18% Similarity=0.153 Sum_probs=65.3
Q ss_pred hhHHHHHHHHhcCCcEEe--cCCCCC-----CHHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 92 GECATARAASAAGTIMTL--SSWATS-----SVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 92 gE~~~AraA~~~gi~~~l--ss~ss~-----sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
.+...+++..++|+-++. ++.+.. .+++|.+..|+ ..+ .--.-.+.+-.+.+.++|+++|.+++=.-.
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~---~~v--~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs 315 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPH---VDI--IAGNVVTADQAKNLIDAGADGLRIGMGSGS 315 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCC---ceE--EECCcCCHHHHHHHHHcCCCEEEECCcCCc
Confidence 457888999999998876 322222 24444444442 112 112223445556777899999887653211
Q ss_pred CCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCC-CHHHHHHHHHhCCCCEEE-EccCCHHHH
Q 025657 165 LGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL-NWKDVKWLQTITSLPILV-KGVLTAEDG 242 (249)
Q Consensus 165 ~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-tW~dl~wlr~~~~lPivl-KGIl~~eDA 242 (249)
.. ...+..+...| .+ ...++..+.+..+.|+|. =||.++.|+
T Consensus 316 ~~--~t~~~~~~g~p----------------------------------~~~ai~~~~~~~~~~~v~vIadGGi~~~~di 359 (495)
T PTZ00314 316 IC--ITQEVCAVGRP----------------------------------QASAVYHVARYARERGVPCIADGGIKNSGDI 359 (495)
T ss_pred cc--ccchhccCCCC----------------------------------hHHHHHHHHHHHhhcCCeEEecCCCCCHHHH
Confidence 10 00000011111 11 123455556667888666 389999999
Q ss_pred HHHhhCC
Q 025657 243 SKLLSKE 249 (249)
Q Consensus 243 ~~A~~~~ 249 (249)
.+|+..|
T Consensus 360 ~kAla~G 366 (495)
T PTZ00314 360 CKALALG 366 (495)
T ss_pred HHHHHcC
Confidence 9999887
No 174
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=68.67 E-value=61 Score=28.90 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=25.5
Q ss_pred CHHHHHHHHHhCC--CCEE-EEccCCHHHHHHHhhCC
Q 025657 216 NWKDVKWLQTITS--LPIL-VKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 216 tW~dl~wlr~~~~--lPiv-lKGIl~~eDA~~A~~~~ 249 (249)
+.+....|.+..+ .|+| .=||.++||+.++.++|
T Consensus 197 d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~G 233 (260)
T PRK00278 197 DLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAG 233 (260)
T ss_pred CHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcC
Confidence 4566777777653 3555 57999999999999886
No 175
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=68.27 E-value=4.1 Score=38.55 Aligned_cols=73 Identities=25% Similarity=0.348 Sum_probs=43.5
Q ss_pred ccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChHHHHHHHHHH
Q 025657 72 NISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRA 148 (249)
Q Consensus 72 ~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA 148 (249)
.+++||+++.|++..| -+++-.++|+||..+|+.+..+-.+ .+-|+.... .....+|+ -......+.+.+++|
T Consensus 63 ~l~~p~~is~MS~GaL-S~~a~~Ala~ga~~~G~~~ntGEGg-~~~~~~~~~-~~~~I~Q~-~sg~fGv~~~~l~~a 135 (368)
T PF01645_consen 63 ELSIPFMISAMSYGAL-SEEAKEALAKGANMAGTASNTGEGG-ELPEERKAA-KDLRIKQI-ASGRFGVRPEYLKQA 135 (368)
T ss_dssp HHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT----GGGCSB--TTSSEEEE--TT-TT--HHHHCC-
T ss_pred hheeeeecccCChhhc-CHHHHHHHHHHHHHhCceEecCCCC-CCHHHhccc-CCceEEEc-CCCCCCCCHHHhcCC
Confidence 3689999999999876 5778889999999999998877644 444544332 22226775 344445555555443
No 176
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=68.21 E-value=34 Score=28.13 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=60.1
Q ss_pred eeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcC--C--CceeEEEccccChHHHHHHHHHHHHcC
Q 025657 77 IMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTG--P--GIRFFQLYVTKHRNVDAQLVKRAERAG 152 (249)
Q Consensus 77 i~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~--~--~~~wfQlY~~~d~~~~~~li~rA~~aG 152 (249)
|+++++|..+ |--|-.-++++-+..|.-.+....-+++ ||++.++ . ...=.=.+--.-.+...++++.++++|
T Consensus 15 vlvak~GlDg--Hd~gakvia~~l~d~GfeVi~~g~~~tp-~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G 91 (143)
T COG2185 15 VLVAKLGLDG--HDRGAKVIARALADAGFEVINLGLFQTP-EEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAG 91 (143)
T ss_pred EEEeccCccc--cccchHHHHHHHHhCCceEEecCCcCCH-HHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhC
Confidence 6788999776 8888889999999999999877665555 6665432 1 222222222345678889999999999
Q ss_pred CcEEEEeecC
Q 025657 153 FKAIALTVDT 162 (249)
Q Consensus 153 ~~alvvTvD~ 162 (249)
...+.|-+=-
T Consensus 92 ~~~i~v~~GG 101 (143)
T COG2185 92 VEDILVVVGG 101 (143)
T ss_pred CcceEEeecC
Confidence 9999865543
No 177
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=68.05 E-value=43 Score=31.23 Aligned_cols=116 Identities=19% Similarity=0.203 Sum_probs=76.3
Q ss_pred CChhhhhhhccCccchHHHHHHHHhhcccceeccccCCCCCCccceeecCcccccceeeccccccccCC--ChhhHHHHH
Q 025657 21 LPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAH--PEGECATAR 98 (249)
Q Consensus 21 Lp~~~~~Y~~gGa~de~t~~~N~~af~~~~l~pr~l~~v~~~d~st~llG~~~~~Pi~iaP~g~~~l~h--~~gE~~~Ar 98 (249)
--......+.++......++++...+....-+|.+. +.||... .|++...+.| ...+....-
T Consensus 35 s~aGglG~ia~~~~~~e~l~~~i~~~~~~~~~p~~~----------~~f~~~~------~~v~~~~l~~~~~~~~~~~~~ 98 (336)
T COG2070 35 SNAGGLGIIASGGLPAEQLRAEIRKIRALTDKPFVA----------NNFGSAP------APVNVNILVARRNAAEAGVDA 98 (336)
T ss_pred hccCCccccccccCCHHHHHHHHHHHHHhcCCcchh----------ccccccc------ccchhheecccccchHHhhhh
Confidence 334455677777777778888888877666555332 2243322 5666666666 445556666
Q ss_pred HHHhcCCcEEecCCCCCCHHHHHhcCC-CceeEEEccccChHHHHHHHHHHHHcCCcEEEE
Q 025657 99 AASAAGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIAL 158 (249)
Q Consensus 99 aA~~~gi~~~lss~ss~sleeia~~~~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvv 158 (249)
.+..+|+|.+..+++-.+-+.|+.... +...+.... +....++++++|+.++|.
T Consensus 99 ii~~~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~------~~~~A~~~~~~G~d~vI~ 153 (336)
T COG2070 99 IIEGAGVPVVSTSFGAPPAEFVARLKAAGIKVIHSVI------TVREALKAERAGADAVIA 153 (336)
T ss_pred HHhcCCCCEEeccCCCCcHHHHHHHHHcCCeEEEEeC------CHHHHHHHHhCCCCEEEe
Confidence 777779999999998777777764322 445554443 335568899999988764
No 178
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=67.96 E-value=71 Score=26.68 Aligned_cols=36 Identities=17% Similarity=0.375 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHhCC-CCEEEEccCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITS-LPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~-lPivlKGIl~~eDA~~A~~~~ 249 (249)
...|+.++++++..+ .||++=|=.+++++..+.++|
T Consensus 145 ~~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~G 181 (212)
T PRK00043 145 PQGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAG 181 (212)
T ss_pred CCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcC
Confidence 456999999999987 999999877999999998876
No 179
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=67.73 E-value=36 Score=29.60 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
.+.+-++.+++.++.|++.=| |-++||++++.+.|
T Consensus 171 ~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~G 206 (221)
T TIGR00734 171 PNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMG 206 (221)
T ss_pred CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCC
Confidence 456778889999999999987 99999999887665
No 180
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=66.79 E-value=10 Score=32.67 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
.+++.++.+++.++.||+++ ||-+.||++++.+.|
T Consensus 61 ~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~G 96 (233)
T PRK00748 61 VNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAG 96 (233)
T ss_pred ccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcC
Confidence 45678889999999999998 699999999998865
No 181
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=66.61 E-value=35 Score=30.50 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=52.6
Q ss_pred HHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCC
Q 025657 117 VEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMD 196 (249)
Q Consensus 117 leeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~ 196 (249)
+.|++.+.|...++- .+. ...++.+.-+++|+.+|-|..|-..+
T Consensus 44 IaEiKr~SPs~G~i~----~~~-d~~~~A~~y~~~GA~aISVlTe~~~F------------------------------- 87 (247)
T PRK13957 44 IAECKRKSPSAGELR----ADY-HPVQIAKTYETLGASAISVLTDQSYF------------------------------- 87 (247)
T ss_pred EEEEecCCCCCCCcC----CCC-CHHHHHHHHHHCCCcEEEEEcCCCcC-------------------------------
Confidence 467776666432221 122 22366777888999998776663221
Q ss_pred CCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 197 KTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
.-++++|+.+|+.+++||+-|+ |.++.....|..+|
T Consensus 88 -----------------~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~G 124 (247)
T PRK13957 88 -----------------GGSLEDLKSVSSELKIPVLRKDFILDEIQIREARAFG 124 (247)
T ss_pred -----------------CCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcC
Confidence 1256899999999999999996 56777766666554
No 182
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=66.14 E-value=37 Score=29.82 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=27.2
Q ss_pred CHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 216 NWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 216 tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
+.+-++.|.+ .+-++|.-| +-+|+.|++|.++|
T Consensus 169 Df~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~~G 202 (229)
T COG3010 169 DFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIEIG 202 (229)
T ss_pred cHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHHhC
Confidence 4455666666 788999998 78999999999987
No 183
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=65.55 E-value=44 Score=30.07 Aligned_cols=84 Identities=11% Similarity=-0.007 Sum_probs=55.2
Q ss_pred cceeeccccccccCCChhhHHHHHHHHhcCCcE--EecCCC---CCCHHHHH-------hcCC--CceeEEEccccChHH
Q 025657 75 MPIMIAPTAFQKMAHPEGECATARAASAAGTIM--TLSSWA---TSSVEEVS-------STGP--GIRFFQLYVTKHRNV 140 (249)
Q Consensus 75 ~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~--~lss~s---s~sleeia-------~~~~--~~~wfQlY~~~d~~~ 140 (249)
.|.++.|+.-.+-++.++=..+.+-..+.|+-- +.||.+ +.|.||-. +... -+...++- . +-..
T Consensus 5 ~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~ 82 (289)
T cd00951 5 LSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTAT 82 (289)
T ss_pred EEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHH
Confidence 356677876555455656567888888888754 344433 34655432 2222 34577774 3 6677
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 025657 141 DAQLVKRAERAGFKAIALTV 160 (249)
Q Consensus 141 ~~~li~rA~~aG~~alvvTv 160 (249)
+.++.++|+++|+.++++.-
T Consensus 83 ~i~~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 83 AIAYAQAAEKAGADGILLLP 102 (289)
T ss_pred HHHHHHHHHHhCCCEEEECC
Confidence 88999999999999999854
No 184
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=65.39 E-value=9.6 Score=34.02 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=29.9
Q ss_pred CHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 216 NWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 216 tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
..+.++.+|+.++.||++=| |-++|+++++.++|
T Consensus 186 ~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~G 220 (256)
T TIGR00262 186 LNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAG 220 (256)
T ss_pred HHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcC
Confidence 45789999999999999975 88899999999875
No 185
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=65.19 E-value=46 Score=30.23 Aligned_cols=85 Identities=13% Similarity=0.012 Sum_probs=55.0
Q ss_pred cceeeccccccccCCChhhHHHHHHHHhcCCcEE--ecCCC---CCCHHHH-------HhcCC--CceeEEEccccChHH
Q 025657 75 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMT--LSSWA---TSSVEEV-------SSTGP--GIRFFQLYVTKHRNV 140 (249)
Q Consensus 75 ~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~--lss~s---s~sleei-------a~~~~--~~~wfQlY~~~d~~~ 140 (249)
.|.++.|+.-.+=++.++=..+.+-..+.|+--+ .||.+ +.|.||= .+... -+...++- .+-..
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~--~~t~~ 89 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG--GGTAQ 89 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--CCHHH
Confidence 5677788765554455555577777777787543 44433 3455533 22222 34567774 36677
Q ss_pred HHHHHHHHHHcCCcEEEEeec
Q 025657 141 DAQLVKRAERAGFKAIALTVD 161 (249)
Q Consensus 141 ~~~li~rA~~aG~~alvvTvD 161 (249)
+.+++++|+++|+.++++.--
T Consensus 90 ~i~~~~~a~~~Gadav~~~pP 110 (303)
T PRK03620 90 AIEYAQAAERAGADGILLLPP 110 (303)
T ss_pred HHHHHHHHHHhCCCEEEECCC
Confidence 889999999999999988554
No 186
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=64.78 E-value=9.8 Score=33.02 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHhCCCCEEE-EccCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTITSLPILV-KGVLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~~lPivl-KGIl~~eDA~~A~~~~ 249 (249)
..|+.|+.+.+.++.||+| -||-+.||++++++.|
T Consensus 63 ~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~G 98 (241)
T PRK13585 63 KNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLG 98 (241)
T ss_pred ccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcC
Confidence 4578899999999999999 5899999999999876
No 187
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=64.55 E-value=22 Score=33.11 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 218 KDVKWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 218 ~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
.-++.+++..+.|||.= ||.++.|+.+|+..|
T Consensus 191 ~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~G 223 (326)
T PRK05458 191 AALRWCAKAARKPIIADGGIRTHGDIAKSIRFG 223 (326)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhC
Confidence 35888888888998886 699999999999876
No 188
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=64.28 E-value=36 Score=29.90 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=29.4
Q ss_pred eEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 129 FFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 129 wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
-+=+.-..|.+...++++...+.|++.|=||..+|.
T Consensus 17 vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~ 52 (222)
T PRK07114 17 MVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDF 52 (222)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCc
Confidence 344455578889999999999999999999998765
No 189
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=64.04 E-value=99 Score=26.93 Aligned_cols=121 Identities=17% Similarity=0.222 Sum_probs=75.7
Q ss_pred ecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChHHHHHHHHH
Q 025657 68 VLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKR 147 (249)
Q Consensus 68 llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~~~~~li~r 147 (249)
-+.+++..||+|. ++..+|.+...-|+-.. +...++++..+..+...++=+-.. |. +.+.+
T Consensus 59 ~lc~~~~v~liIN-----------d~~dlA~~~~AdGVHlG---q~D~~~~~ar~~~~~~~iIG~S~h-~~----eea~~ 119 (211)
T COG0352 59 ALCQKYGVPLIIN-----------DRVDLALAVGADGVHLG---QDDMPLAEARELLGPGLIIGLSTH-DL----EEALE 119 (211)
T ss_pred HHHHHhCCeEEec-----------CcHHHHHhCCCCEEEcC---CcccchHHHHHhcCCCCEEEeecC-CH----HHHHH
Confidence 3556666777661 23444445555555444 335567777765554445544332 33 45577
Q ss_pred HHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhC
Q 025657 148 AERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTIT 227 (249)
Q Consensus 148 A~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~ 227 (249)
|++.|+.-+.+. |+ +|. ..+. ..++..|+-++|+++.-
T Consensus 120 A~~~g~DYv~~G---pi-------------fpT--------------~tK~------------~~~~~G~~~l~~~~~~~ 157 (211)
T COG0352 120 AEELGADYVGLG---PI-------------FPT--------------STKP------------DAPPLGLEGLREIRELV 157 (211)
T ss_pred HHhcCCCEEEEC---Cc-------------CCC--------------CCCC------------CCCccCHHHHHHHHHhC
Confidence 888887766542 22 110 0000 01577899999999999
Q ss_pred CCCEEEEccCCHHHHHHHhhCC
Q 025657 228 SLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 228 ~lPivlKGIl~~eDA~~A~~~~ 249 (249)
+.|++.=|=++++-+....++|
T Consensus 158 ~iP~vAIGGi~~~nv~~v~~~G 179 (211)
T COG0352 158 NIPVVAIGGINLENVPEVLEAG 179 (211)
T ss_pred CCCEEEEcCCCHHHHHHHHHhC
Confidence 9999999999999999988877
No 190
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=63.40 E-value=70 Score=27.72 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=49.7
Q ss_pred cChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCC
Q 025657 136 KHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL 215 (249)
Q Consensus 136 ~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (249)
-+.+.......-|+..|++-+.+ +|... +. ...
T Consensus 131 ~~~e~~~~~a~aa~~~G~~~i~L-e~~sG-----------a~-----------------------------------~~v 163 (205)
T TIGR01769 131 NKPEIAAAYCLAAKYFGMKWVYL-EAGSG-----------AS-----------------------------------YPV 163 (205)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE-EcCCC-----------CC-----------------------------------CCC
Confidence 36677778888888999998877 33211 11 123
Q ss_pred CHHHHHHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 216 NWKDVKWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 216 tW~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
+.+-++.+|+.++.|+++= ||-++|+|+.++++|
T Consensus 164 ~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~G 198 (205)
T TIGR01769 164 NPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAG 198 (205)
T ss_pred CHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcC
Confidence 4677899999999999886 699999999988764
No 191
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=62.54 E-value=40 Score=30.53 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHhCCCCEEEEcc-CCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITSLPILVKGV-LTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivlKGI-l~~eDA~~A~~~~ 249 (249)
.-+|+.+++|++.++.||..=+- .+++|.+.+++.|
T Consensus 214 ~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~ 250 (316)
T cd03319 214 AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGG 250 (316)
T ss_pred CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcC
Confidence 35789999999999999988654 5789998887753
No 192
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=62.26 E-value=1.2e+02 Score=27.70 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=23.8
Q ss_pred HHHHHHHHhC--CCCEE-EEccCCHHHHHHHhhCC
Q 025657 218 KDVKWLQTIT--SLPIL-VKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 218 ~dl~wlr~~~--~lPiv-lKGIl~~eDA~~A~~~~ 249 (249)
.-+..+++.. +.||+ +=||.++|||.+.+.+|
T Consensus 229 ~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aG 263 (310)
T PRK02506 229 ANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCG 263 (310)
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcC
Confidence 3444555666 57877 56899999999998876
No 193
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=62.18 E-value=1.3e+02 Score=27.49 Aligned_cols=84 Identities=19% Similarity=0.143 Sum_probs=53.9
Q ss_pred cceeeccccccccCCChhhHHHHHHHHhcCCc--EEecCCC---CCCHHHHH-------hcCC--CceeEEEccccChHH
Q 025657 75 MPIMIAPTAFQKMAHPEGECATARAASAAGTI--MTLSSWA---TSSVEEVS-------STGP--GIRFFQLYVTKHRNV 140 (249)
Q Consensus 75 ~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~--~~lss~s---s~sleeia-------~~~~--~~~wfQlY~~~d~~~ 140 (249)
.|.++.|+.-.+-++.++=..+.+-.-+.|+- +.+||.+ +.|.||-. ++.. -+...+.-- .+-+.
T Consensus 9 i~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~-~~t~e 87 (299)
T COG0329 9 IPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS-NSTAE 87 (299)
T ss_pred eeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC-CcHHH
Confidence 57778887754445666666777777777765 4445533 44666542 2222 234555532 34566
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 025657 141 DAQLVKRAERAGFKAIALT 159 (249)
Q Consensus 141 ~~~li~rA~~aG~~alvvT 159 (249)
+.++.+.|++.|++++++.
T Consensus 88 ai~lak~a~~~Gad~il~v 106 (299)
T COG0329 88 AIELAKHAEKLGADGILVV 106 (299)
T ss_pred HHHHHHHHHhcCCCEEEEe
Confidence 7799999999999999874
No 194
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=61.98 E-value=20 Score=33.45 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChH-HHHHHHHHHHHcCCcEE
Q 025657 94 CATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRN-VDAQLVKRAERAGFKAI 156 (249)
Q Consensus 94 ~~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~-~~~~li~rA~~aG~~al 156 (249)
..+.+++.+.|++++..-+...+++.+.+.. .|+|+ .-+. ....|++.+-+.|...+
T Consensus 147 ~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~v---d~lqI---gAr~~~N~~LL~~va~~~kPVi 204 (335)
T PRK08673 147 KLLAEAREETGLPIVTEVMDPRDVELVAEYV---DILQI---GARNMQNFDLLKEVGKTNKPVL 204 (335)
T ss_pred HHHHHHHHHcCCcEEEeeCCHHHHHHHHHhC---CeEEE---CcccccCHHHHHHHHcCCCcEE
Confidence 3688889999999999888888888887653 48888 3332 33477777777766444
No 195
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=61.88 E-value=22 Score=31.90 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=47.8
Q ss_pred ccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChH-HHHHHHHHHHHcCCcE
Q 025657 80 APTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRN-VDAQLVKRAERAGFKA 155 (249)
Q Consensus 80 aP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~-~~~~li~rA~~aG~~a 155 (249)
+|-+++++.. +|=..+.+.+++.|++++.+-+...+++.+++. ..++|+= -+. ...+|++.+.+.|-..
T Consensus 56 s~~sf~G~G~-~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~---vdilqIg---s~~~~n~~LL~~va~tgkPV 125 (250)
T PRK13397 56 SAASFQGLGL-QGIRYLHEVCQEFGLLSVSEIMSERQLEEAYDY---LDVIQVG---ARNMQNFEFLKTLSHIDKPI 125 (250)
T ss_pred CCcccCCCCH-HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHhc---CCEEEEC---cccccCHHHHHHHHccCCeE
Confidence 4566666543 466689999999999999888888888888763 3477772 222 2247777777766433
No 196
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=61.65 E-value=75 Score=27.91 Aligned_cols=133 Identities=13% Similarity=0.098 Sum_probs=68.4
Q ss_pred hhhccCccchHHHHHHHHhhcccce---eccccCCC--CCCccc-eeecCcccccceeeccccccccCCChhhHHHHHHH
Q 025657 27 DYYASGAEDQWTLQENRNAFSRILF---RPRILRDV--SKIDMT-TTVLGFNISMPIMIAPTAFQKMAHPEGECATARAA 100 (249)
Q Consensus 27 ~Y~~gGa~de~t~~~N~~af~~~~l---~pr~l~~v--~~~d~s-t~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA 100 (249)
.-++||-+.-.++..-...|+=+.| .|.--..+ ..+.++ +......+..|++.-++... ..+.+..+.++.
T Consensus 5 ~l~SGGKDS~~al~~a~~~~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~---~e~~~e~l~~~l 81 (223)
T TIGR00290 5 ALISGGKDSCLALYHALKEHEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGT---EEDEVEELKGIL 81 (223)
T ss_pred EEecCcHHHHHHHHHHHHhCeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCC---ccHHHHHHHHHH
Confidence 4568888888887765444332222 22210000 011111 12334445566655343222 122334777878
Q ss_pred HhcCCcEEecC-CCC----CCHHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 025657 101 SAAGTIMTLSS-WAT----SSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLG 166 (249)
Q Consensus 101 ~~~gi~~~lss-~ss----~sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g 166 (249)
.+.|+-.+++- ..+ .-+|.+++..+=...+-| |..|++ +++++..++|++++++.|++..++
T Consensus 82 ~~~gv~~vv~GdI~s~~qr~~~e~v~~~lgl~~~~PL-W~~~~~---~ll~e~i~~G~~aiIv~v~a~gL~ 148 (223)
T TIGR00290 82 HTLDVEAVVFGAIYSEYQKTRIERVCRELGLKSFAPL-WHRDPE---KLMEEFVEEKFEARIIAVAAEGLD 148 (223)
T ss_pred HHcCCCEEEECCcccHHHHHHHHHHHHhcCCEEeccc-cCCCHH---HHHHHHHHcCCeEEEEEEecCCCC
Confidence 88887665532 211 125566654331112222 234543 577777799999999999987543
No 197
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=61.63 E-value=23 Score=31.66 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCcEEecCCCCCCHHHHHhcC--CCceeEEEccccChHHHHHHHHHHHH-cCCcEEEEeecCCC
Q 025657 95 ATARAASAAGTIMTLSSWATSSVEEVSSTG--PGIRFFQLYVTKHRNVDAQLVKRAER-AGFKAIALTVDTPR 164 (249)
Q Consensus 95 ~~AraA~~~gi~~~lss~ss~sleeia~~~--~~~~wfQlY~~~d~~~~~~li~rA~~-aG~~alvvTvD~p~ 164 (249)
-+.|.|.+.-||++++ .+-.|+||+.+.. +.-+ +.++..-=..-+||.++.+ -|...+|+.+|+--
T Consensus 65 vv~r~A~~vfiPltVG-GGI~s~eD~~~ll~aGADK---VSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr 133 (256)
T COG0107 65 VVERVAEQVFIPLTVG-GGIRSVEDARKLLRAGADK---VSINSAAVKDPELITEAADRFGSQCIVVAIDAKR 133 (256)
T ss_pred HHHHHHhhceeeeEec-CCcCCHHHHHHHHHcCCCe---eeeChhHhcChHHHHHHHHHhCCceEEEEEEeee
Confidence 5789999999999998 5678999997631 1111 1222211122356666554 69999999999744
No 198
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=61.38 E-value=20 Score=33.70 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEE
Q 025657 91 EGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAI 156 (249)
Q Consensus 91 ~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~al 156 (249)
++-..+.+.|.+.|++++.+-+...+++.+.+.. .++|+=-..- ....|++.+.+.|-..+
T Consensus 169 e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~v---d~lkI~s~~~--~n~~LL~~~a~~gkPVi 229 (360)
T PRK12595 169 EGLKILKQVADEYGLAVISEIVNPADVEVALDYV---DVIQIGARNM--QNFELLKAAGRVNKPVL 229 (360)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHhC---CeEEECcccc--cCHHHHHHHHccCCcEE
Confidence 4445888889999999998888878888887663 3777722111 22478888877776444
No 199
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=60.77 E-value=25 Score=31.91 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=48.8
Q ss_pred hHHHHHHHHhcCCcEEecCCCCC----CHHHH-------HhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeec
Q 025657 93 ECATARAASAAGTIMTLSSWATS----SVEEV-------SSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVD 161 (249)
Q Consensus 93 E~~~AraA~~~gi~~~lss~ss~----sleei-------a~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD 161 (249)
=.++.+||++.+.|.++....+. +++.+ ++...-|..++| |.....+.+++|-++||+.+.+ |
T Consensus 31 ~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHl----DH~~~~e~i~~Al~~G~tsVm~--d 104 (281)
T PRK06806 31 VMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHF----DHGMTFEKIKEALEIGFTSVMF--D 104 (281)
T ss_pred HHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCEEEE--c
Confidence 34899999999999998764432 34433 222334666776 8888889999999999988754 5
Q ss_pred CCCCCCc
Q 025657 162 TPRLGRR 168 (249)
Q Consensus 162 ~p~~g~R 168 (249)
......+
T Consensus 105 ~s~~~~~ 111 (281)
T PRK06806 105 GSHLPLE 111 (281)
T ss_pred CCCCCHH
Confidence 5444433
No 200
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=59.50 E-value=35 Score=29.34 Aligned_cols=67 Identities=19% Similarity=0.239 Sum_probs=43.4
Q ss_pred EccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhc
Q 025657 132 LYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQI 211 (249)
Q Consensus 132 lY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (249)
+.-..|.+...++++..-+.|++.+=||..+|..
T Consensus 13 Vir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a---------------------------------------------- 46 (196)
T PF01081_consen 13 VIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNA---------------------------------------------- 46 (196)
T ss_dssp EETTSSGGGHHHHHHHHHHTT--EEEEETTSTTH----------------------------------------------
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccH----------------------------------------------
Confidence 3334577788888888889999999999886431
Q ss_pred CCCCCHHHHHHHHHhCC-CCEEEEccCCHHHHHHHhhCC
Q 025657 212 DRSLNWKDVKWLQTITS-LPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 212 ~~~~tW~dl~wlr~~~~-lPivlKGIl~~eDA~~A~~~~ 249 (249)
.+-|+.+++..+ +-|=.=.|+++|+|+.|+++|
T Consensus 47 -----~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aG 80 (196)
T PF01081_consen 47 -----LEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAG 80 (196)
T ss_dssp -----HHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcC
Confidence 133555665543 444455688888888888876
No 201
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=59.19 E-value=20 Score=31.44 Aligned_cols=70 Identities=21% Similarity=0.163 Sum_probs=44.5
Q ss_pred HHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEE-------------------------------ccccChHHHHH
Q 025657 95 ATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQL-------------------------------YVTKHRNVDAQ 143 (249)
Q Consensus 95 ~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQl-------------------------------Y~~~d~~~~~~ 143 (249)
.+.+...+.+-..++||++...++.+.+..|...--.| |.......+.+
T Consensus 120 ~v~~~l~~~~~~v~i~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (237)
T cd08585 120 RVLAALKDYKGPAAIMSFDPRVVRWFRKLAPGIPRGQLSEGSNDEADPAFWNEALLSALFSNLLTRPDFIAYHLDDLPNP 199 (237)
T ss_pred HHHHHHHhcCCCEEEEECCHHHHHHHHHHCCCCCEEEEecCCcccccccchhHHHHHhhhhhhccCCCEEEeChhhCcCH
Confidence 44454555566777788777777777765542211111 11111234567
Q ss_pred HHHHHHHc-CCcEEEEeecCCC
Q 025657 144 LVKRAERA-GFKAIALTVDTPR 164 (249)
Q Consensus 144 li~rA~~a-G~~alvvTvD~p~ 164 (249)
++++++++ |.+..+.|||.+.
T Consensus 200 ~v~~~~~~~G~~v~vWTVnd~~ 221 (237)
T cd08585 200 FVTLARALLGMPVIVWTVRTEE 221 (237)
T ss_pred HHHHHHHhcCCcEEEEeCCCHH
Confidence 89999999 9999999999755
No 202
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=59.05 E-value=1.2e+02 Score=26.13 Aligned_cols=57 Identities=16% Similarity=0.054 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEE
Q 025657 95 ATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIAL 158 (249)
Q Consensus 95 ~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvv 158 (249)
.-++.|.++|.-|++|...+..+.+.+...+-+... . -.+.+-+.+|.++|++.+.+
T Consensus 74 ~~~~~a~~aGA~fivsp~~~~~v~~~~~~~~~~~~~-----G--~~t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 74 EQVDRLADAGGRLIVTPNTDPEVIRRAVALGMVVMP-----G--VATPTEAFAALRAGAQALKL 130 (206)
T ss_pred HHHHHHHHcCCCEEECCCCCHHHHHHHHHCCCcEEc-----c--cCCHHHHHHHHHcCCCEEEE
Confidence 466777778888888776655555554432211111 2 12224457777888877754
No 203
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=58.88 E-value=26 Score=31.54 Aligned_cols=69 Identities=22% Similarity=0.281 Sum_probs=47.1
Q ss_pred cccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChHHH-HHHHHHHHHcCCcEE
Q 025657 81 PTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVD-AQLVKRAERAGFKAI 156 (249)
Q Consensus 81 P~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~~~-~~li~rA~~aG~~al 156 (249)
|.+..++. .+|-..+.+.+++.|+++...-+...+++.+.+.. .|+|+ .-+... ..|++.+.+.|...+
T Consensus 69 ~~s~~G~g-~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~v---d~~kI---ga~~~~n~~LL~~~a~~gkPV~ 138 (266)
T PRK13398 69 PYSFQGLG-EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADYA---DMLQI---GSRNMQNFELLKEVGKTKKPIL 138 (266)
T ss_pred CCccCCcH-HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHhC---CEEEE---CcccccCHHHHHHHhcCCCcEE
Confidence 33444442 44555888999999999998888888888887653 48888 444333 368888766665443
No 204
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=58.17 E-value=11 Score=33.29 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhC
Q 025657 217 WKDVKWLQTITSLPILVKG-VLTAEDGSKLLSK 248 (249)
Q Consensus 217 W~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~ 248 (249)
-+.++.+|+.++.||++=| |-++|++.+++++
T Consensus 176 ~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~ 208 (242)
T cd04724 176 KELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY 208 (242)
T ss_pred HHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc
Confidence 3678999999999999976 7779999988764
No 205
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=57.60 E-value=29 Score=31.05 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=39.3
Q ss_pred HHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChHH----HHHHHHHHHHcCCcEEEEee
Q 025657 95 ATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNV----DAQLVKRAERAGFKAIALTV 160 (249)
Q Consensus 95 ~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~~----~~~li~rA~~aG~~alvvTv 160 (249)
-+.++|.+.|.-.++-+ |+--....+...||++|....++. ..+..+++++.|+--|+||-
T Consensus 112 lI~~~a~~FGsQciVva-----IDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLts 176 (256)
T COG0107 112 LITEAADRFGSQCIVVA-----IDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTS 176 (256)
T ss_pred HHHHHHHHhCCceEEEE-----EEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEee
Confidence 35566666666555432 111111011356999999877654 55888999999999999984
No 206
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=57.12 E-value=15 Score=33.07 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=24.5
Q ss_pred HHHHHHHHhCC--CCEE-EEccCCHHHHHHHhhCC
Q 025657 218 KDVKWLQTITS--LPIL-VKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 218 ~dl~wlr~~~~--lPiv-lKGIl~~eDA~~A~~~~ 249 (249)
.-+..+++..+ +||+ +=||.++|||.+.+.+|
T Consensus 232 ~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aG 266 (295)
T PF01180_consen 232 RWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAG 266 (295)
T ss_dssp HHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHT
T ss_pred HHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhC
Confidence 45666888888 8887 67899999999998876
No 207
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=56.87 E-value=1.1e+02 Score=26.31 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=26.1
Q ss_pred CHHHHHHHHHhCCCCEEEE-cc--CCHHH----HHHHhhCC
Q 025657 216 NWKDVKWLQTITSLPILVK-GV--LTAED----GSKLLSKE 249 (249)
Q Consensus 216 tW~dl~wlr~~~~lPivlK-GI--l~~eD----A~~A~~~~ 249 (249)
+.+.++.+.+..+.|+++= || .+++| +..+.++|
T Consensus 167 ~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~G 207 (235)
T cd00958 167 DAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAG 207 (235)
T ss_pred CHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcC
Confidence 6788999999999999883 34 67766 77777766
No 208
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=56.60 E-value=1.1e+02 Score=27.64 Aligned_cols=29 Identities=10% Similarity=0.058 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCcEEecCCCCCCHHHHHhc
Q 025657 95 ATARAASAAGTIMTLSSWATSSVEEVSST 123 (249)
Q Consensus 95 ~~AraA~~~gi~~~lss~ss~sleeia~~ 123 (249)
.+.+++++.|.|+++++.-+.+++|+..+
T Consensus 125 ~LL~~~a~~gkPV~lk~G~~~s~~e~~~A 153 (266)
T PRK13398 125 ELLKEVGKTKKPILLKRGMSATLEEWLYA 153 (266)
T ss_pred HHHHHHhcCCCcEEEeCCCCCCHHHHHHH
Confidence 68888899999999999888889988765
No 209
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=56.22 E-value=15 Score=26.83 Aligned_cols=25 Identities=8% Similarity=0.204 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCcEEE-EeecCC
Q 025657 139 NVDAQLVKRAERAGFKAIA-LTVDTP 163 (249)
Q Consensus 139 ~~~~~li~rA~~aG~~alv-vTvD~p 163 (249)
+..++|.++|++.|+.|++ +.+|+.
T Consensus 29 ~Al~eM~e~A~~lGAnAVVGvr~d~s 54 (74)
T TIGR03884 29 EIVENLREKVKAKGGMGLIAFRITCA 54 (74)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEEcC
Confidence 5677999999999999987 777765
No 210
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=55.86 E-value=89 Score=27.14 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=50.6
Q ss_pred eeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHh
Q 025657 128 RFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYV 207 (249)
Q Consensus 128 ~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (249)
+-+-+.-..+.+...++++.+.+.|++.|=||..+|..
T Consensus 16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~------------------------------------------ 53 (212)
T PRK05718 16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAA------------------------------------------ 53 (212)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccH------------------------------------------
Confidence 34555556788888899999999999999998765431
Q ss_pred hhhcCCCCCHHHHHHHHHhCC-CCEEEEccCCHHHHHHHhhCC
Q 025657 208 ANQIDRSLNWKDVKWLQTITS-LPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 208 ~~~~~~~~tW~dl~wlr~~~~-lPivlKGIl~~eDA~~A~~~~ 249 (249)
-+-|+.||+..+ .-|-.=.|+++++|++|+++|
T Consensus 54 ---------~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aG 87 (212)
T PRK05718 54 ---------LEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAG 87 (212)
T ss_pred ---------HHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcC
Confidence 023566666543 445566688888888888877
No 211
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=55.68 E-value=1.7e+02 Score=26.91 Aligned_cols=41 Identities=29% Similarity=0.287 Sum_probs=26.2
Q ss_pred cccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHH
Q 025657 73 ISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEV 120 (249)
Q Consensus 73 ~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleei 120 (249)
+..||+-+||+... . -.+|-+..++|-.=++++ +..+.|++
T Consensus 10 i~~PIiqapM~~is--~----~~LaaAVs~aGglG~l~~-~~~~~~~l 50 (330)
T PF03060_consen 10 IKYPIIQAPMGGIS--T----PELAAAVSNAGGLGFLGA-GGLTPEQL 50 (330)
T ss_dssp -SSSEEE---TTTS--S----HHHHHHHHHTTSBEEEEC-TTSSHHHH
T ss_pred CCcCEEcCCCCCCC--h----HHHHHHHHhCCCEeeccc-cccChHHH
Confidence 46799999988632 2 367888888999888885 34555544
No 212
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=55.37 E-value=12 Score=31.25 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 213 RSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 213 ~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
+++.|+.++|+++..+.|++.=|=.++++...+.++|
T Consensus 134 ~~~g~~~l~~~~~~~~~pv~AlGGI~~~~i~~l~~~G 170 (180)
T PF02581_consen 134 PPLGLDGLREIARASPIPVYALGGITPENIPELREAG 170 (180)
T ss_dssp TTCHHHHHHHHHHHTSSCEEEESS--TTTHHHHHHTT
T ss_pred cccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcC
Confidence 5789999999999999999999988999999998876
No 213
>PRK02877 hypothetical protein; Provisional
Probab=54.67 E-value=18 Score=28.09 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHcCCcEEE-EeecCCCC
Q 025657 138 RNVDAQLVKRAERAGFKAIA-LTVDTPRL 165 (249)
Q Consensus 138 ~~~~~~li~rA~~aG~~alv-vTvD~p~~ 165 (249)
++...+|.++|++.|+.|++ +.+|....
T Consensus 59 ~~A~~rm~~~A~~lGAnAVIgvr~d~~~i 87 (106)
T PRK02877 59 EIAFEELGEQARALGADAVVGIDIDYETV 87 (106)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEehhc
Confidence 35667899999999999987 77787654
No 214
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=54.65 E-value=88 Score=28.01 Aligned_cols=85 Identities=15% Similarity=0.000 Sum_probs=53.4
Q ss_pred cceeeccccccccCCChhhHHHHHHHHhcCCcEE--ecCCC---CCCHHHH-------HhcCC--CceeEEEccccChHH
Q 025657 75 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMT--LSSWA---TSSVEEV-------SSTGP--GIRFFQLYVTKHRNV 140 (249)
Q Consensus 75 ~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~--lss~s---s~sleei-------a~~~~--~~~wfQlY~~~d~~~ 140 (249)
.|.++.|+.-.+-++.++=..+.+-..+.|+--+ .||.+ +.|.||= .+..+ -+.+.++-- .+-+.
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~ 84 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAE 84 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHH
Confidence 4666777665555556565677777777777543 34433 3455543 22223 245666632 35667
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 025657 141 DAQLVKRAERAGFKAIALTV 160 (249)
Q Consensus 141 ~~~li~rA~~aG~~alvvTv 160 (249)
+.++.+.|+++|+.++++.-
T Consensus 85 ~i~~a~~a~~~G~d~v~~~p 104 (292)
T PRK03170 85 AIELTKFAEKAGADGALVVT 104 (292)
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 77888999999999999864
No 215
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=54.60 E-value=81 Score=28.43 Aligned_cols=85 Identities=13% Similarity=0.003 Sum_probs=52.6
Q ss_pred cceeeccccccccCCChhhHHHHHHHHhcC-Cc--EEecCC---CCCCHHHHH-------hcCC--CceeEEEccccChH
Q 025657 75 MPIMIAPTAFQKMAHPEGECATARAASAAG-TI--MTLSSW---ATSSVEEVS-------STGP--GIRFFQLYVTKHRN 139 (249)
Q Consensus 75 ~Pi~iaP~g~~~l~h~~gE~~~AraA~~~g-i~--~~lss~---ss~sleeia-------~~~~--~~~wfQlY~~~d~~ 139 (249)
.|.++.|+--.+-++.++=..+.+-..+.| +- ++.||. .+.|.||-. +... -+...++-- .+-+
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~~t~ 83 (290)
T TIGR00683 5 FSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS-VNLK 83 (290)
T ss_pred EeeeecCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHH
Confidence 356677765555445555557777777777 43 445443 345666542 2222 244666642 2456
Q ss_pred HHHHHHHHHHHcCCcEEEEee
Q 025657 140 VDAQLVKRAERAGFKAIALTV 160 (249)
Q Consensus 140 ~~~~li~rA~~aG~~alvvTv 160 (249)
.+.++.+.|+++|+.++++..
T Consensus 84 ~~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 84 EAVELGKYATELGYDCLSAVT 104 (290)
T ss_pred HHHHHHHHHHHhCCCEEEEeC
Confidence 677999999999999999854
No 216
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=54.51 E-value=32 Score=30.07 Aligned_cols=129 Identities=16% Similarity=0.202 Sum_probs=58.0
Q ss_pred hhccCccchHHHHHHHHhhcccceeccccCCCC------CCccc-eeecCcccccceeeccccccccCCChhhHHHHHHH
Q 025657 28 YYASGAEDQWTLQENRNAFSRILFRPRILRDVS------KIDMT-TTVLGFNISMPIMIAPTAFQKMAHPEGECATARAA 100 (249)
Q Consensus 28 Y~~gGa~de~t~~~N~~af~~~~l~pr~l~~v~------~~d~s-t~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA 100 (249)
.++||-+.-.++..-... .++...-.+...-. .+..+ +.....-+..|+..-++.+. ..+-+..+.++.
T Consensus 6 l~SGGKDS~lAl~~a~~~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~---~~~~~~~l~~~l 81 (218)
T PF01902_consen 6 LWSGGKDSCLALYRALRQ-HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGD---EEDYVEDLKEAL 81 (218)
T ss_dssp E--SSHHHHHHHHHHHHT--EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE------CCCHHHHHHHHH
T ss_pred EEcCcHHHHHHHHHHHHh-CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCc---cchhhHHHHHHH
Confidence 468888888887665555 22322111111111 11111 11222344568887776532 233344777888
Q ss_pred HhcCCcEEecCCCCCC------HHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 025657 101 SAAGTIMTLSSWATSS------VEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRL 165 (249)
Q Consensus 101 ~~~gi~~~lss~ss~s------leeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~ 165 (249)
++.++-.+++ ..-.+ +|.|++..+=...+-| |..|++ ++++..-+.|++++++.||+..+
T Consensus 82 ~~~~v~~vv~-GdI~~~~~r~~~e~vc~~lGl~~~~PL-W~~d~~---~ll~e~i~~Gf~aiIv~V~~~~L 147 (218)
T PF01902_consen 82 KELKVEAVVF-GDIDSEYQRNWVERVCERLGLEAVFPL-WGRDRE---ELLREFIESGFEAIIVKVDADGL 147 (218)
T ss_dssp CTC--SEEE---TTS-HHHHHHHHHHHHHCT-EEE-TT-TT--HH---HHHHHHHHTT-EEEEEEEESTT-
T ss_pred HHcCCCEEEE-CcCCcHHHHHHHHHHHHHcCCEEEecc-cCCCHH---HHHHHHHHCCCeEEEEEEeccCC
Confidence 8888665553 22222 4455543331111111 234553 55555568899999999998764
No 217
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=54.41 E-value=60 Score=29.40 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=56.9
Q ss_pred CcccccceeeccccccccC----CChhhH--HHHHHHHhcCCcEEecCCCC--CCHHHHHhcCCCceeEEEcc-ccChHH
Q 025657 70 GFNISMPIMIAPTAFQKMA----HPEGEC--ATARAASAAGTIMTLSSWAT--SSVEEVSSTGPGIRFFQLYV-TKHRNV 140 (249)
Q Consensus 70 G~~~~~Pi~iaP~g~~~l~----h~~gE~--~~AraA~~~gi~~~lss~ss--~sleeia~~~~~~~wfQlY~-~~d~~~ 140 (249)
.+++-||+++=+...+.-+ |.+.+. -.+|.|++.|.=++=-.+.. .+++++.+.++.+.-.===. -.+...
T Consensus 139 a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e~F~~vv~~~~vpVviaGG~k~~~~~~ 218 (265)
T COG1830 139 AHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPESFRRVVAACGVPVVIAGGPKTETERE 218 (265)
T ss_pred HHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCChHHHHHHHHhCCCCEEEeCCCCCCChHH
Confidence 4677888887665544433 566665 67899999998887555444 67888877654221110000 124556
Q ss_pred HHHHHHHHHHcCCcEEEE
Q 025657 141 DAQLVKRAERAGFKAIAL 158 (249)
Q Consensus 141 ~~~li~rA~~aG~~alvv 158 (249)
.++++..|-++|+..+++
T Consensus 219 ~l~~~~~ai~aGa~G~~~ 236 (265)
T COG1830 219 FLEMVTAAIEAGAMGVAV 236 (265)
T ss_pred HHHHHHHHHHccCcchhh
Confidence 678888888999987644
No 218
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=54.08 E-value=52 Score=28.48 Aligned_cols=67 Identities=16% Similarity=0.256 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCcEEe-cCCCC----CCHHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 025657 95 ATARAASAAGTIMTL-SSWAT----SSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLG 166 (249)
Q Consensus 95 ~~AraA~~~gi~~~l-ss~ss----~sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g 166 (249)
++.+++.+ |+..++ |+..+ ..+|.+++..+ ..-+=+.|..|++ ++++.+.+.|++++++.|++..++
T Consensus 78 ~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~v~~~~g-l~~~~PLw~~~~~---el~~~~~~~G~~~~i~~v~~~~l~ 149 (218)
T TIGR03679 78 ALKELKRE-GVEGIVTGAIASRYQKSRIERICEELG-LKVFAPLWGRDQE---EYLRELVERGFRFIIVSVSAYGLD 149 (218)
T ss_pred HHHHHHHc-CCCEEEECCcccHhHHHHHHHHHHhCC-CeEEeehhcCCHH---HHHHHHHHCCCEEEEEEEecCCCC
Confidence 34444443 877544 33332 23555654433 1111122334544 578888899999999999986544
No 219
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=53.61 E-value=69 Score=30.08 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=27.2
Q ss_pred CHHHHHHHHHhC--CCCEEEE-ccCCHHHHHHHhhCC
Q 025657 216 NWKDVKWLQTIT--SLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 216 tW~dl~wlr~~~--~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
+|+-|..+++.. +.||++= ||.++.|+.+|+..|
T Consensus 262 ~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalG 298 (351)
T cd04737 262 SFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASG 298 (351)
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcC
Confidence 567777887765 5887775 699999999998876
No 220
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=53.49 E-value=1.3e+02 Score=26.10 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 213 RSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 213 ~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
..++|+-+.-+ ....|++|=|=++||....|++.+
T Consensus 141 ~~fDW~~l~~~--~~~~~~~LAGGL~p~NV~~ai~~~ 175 (208)
T COG0135 141 QTFDWNLLPKL--RLSKPVMLAGGLNPDNVAEAIALG 175 (208)
T ss_pred cEECHHHhccc--cccCCEEEECCCCHHHHHHHHHhc
Confidence 47899987766 567789999999999999999764
No 221
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=53.35 E-value=18 Score=24.85 Aligned_cols=22 Identities=50% Similarity=0.629 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCcEEEEeec
Q 025657 140 VDAQLVKRAERAGFKAIALTVD 161 (249)
Q Consensus 140 ~~~~li~rA~~aG~~alvvTvD 161 (249)
...+++++|++.|++++.+|==
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh 37 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDH 37 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeC
Confidence 4668999999999999998843
No 222
>PRK02227 hypothetical protein; Provisional
Probab=52.30 E-value=1.5e+02 Score=26.50 Aligned_cols=131 Identities=21% Similarity=0.254 Sum_probs=71.3
Q ss_pred CChhhH-HHHHHHHhcCCcEE-ecCCCCCCHHH----HH-------hcCCCceeEEEccccChH-----HHHHHHHHHHH
Q 025657 89 HPEGEC-ATARAASAAGTIMT-LSSWATSSVEE----VS-------STGPGIRFFQLYVTKHRN-----VDAQLVKRAER 150 (249)
Q Consensus 89 h~~gE~-~~AraA~~~gi~~~-lss~ss~slee----ia-------~~~~~~~wfQlY~~~d~~-----~~~~li~rA~~ 150 (249)
+| ++. ..+.+++..|.-|+ ++-+.....++ +. ...++..+.=..+ .|.. --.++++.+.+
T Consensus 65 ~p-~~~~~aa~~~a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~y-aD~~r~~~~~~~~l~~~a~~ 142 (238)
T PRK02227 65 KP-GTISLAALGAAATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGY-ADAHRVGSVSPLSLPAIAAD 142 (238)
T ss_pred Cc-hHHHHHHHHHHhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEe-cccccccCCChHHHHHHHHH
Confidence 45 444 56677788899887 66655444332 21 1123445554432 3433 34588899999
Q ss_pred cCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCC
Q 025657 151 AGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLP 230 (249)
Q Consensus 151 aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lP 230 (249)
+||..++| ||.. ++|-++...++...+... -.... ..-+..-+-.++.|+||.-|+..-+-=
T Consensus 143 aGf~g~Ml--DTa~--------Kdg~~Lfd~l~~~~L~~F--v~~ar------~~Gl~~gLAGSL~~~dip~L~~l~pD~ 204 (238)
T PRK02227 143 AGFDGAML--DTAI--------KDGKSLFDHMDEEELAEF--VAEAR------SHGLMSALAGSLKFEDIPALKRLGPDI 204 (238)
T ss_pred cCCCEEEE--eccc--------CCCcchHhhCCHHHHHHH--HHHHH------HcccHhHhcccCchhhHHHHHhcCCCE
Confidence 99999876 6654 223233333333222111 00000 000011234689999999999887666
Q ss_pred EEEEccCCH
Q 025657 231 ILVKGVLTA 239 (249)
Q Consensus 231 ivlKGIl~~ 239 (249)
+=+.|-+|.
T Consensus 205 lGfRgavC~ 213 (238)
T PRK02227 205 LGVRGAVCG 213 (238)
T ss_pred EEechhccC
Confidence 667776663
No 223
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=52.28 E-value=1.1e+02 Score=28.07 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=25.2
Q ss_pred HHHHHHHHhC-CCCEEEE-ccCCHHHHHHHhhCC
Q 025657 218 KDVKWLQTIT-SLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 218 ~dl~wlr~~~-~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
+.|..+++.. +.||+.= ||.+++|+.+|+..|
T Consensus 244 ~~l~~~~~~~~~ipIiasGGIr~~~dv~kal~lG 277 (326)
T cd02811 244 ASLLEVRSALPDLPLIASGGIRNGLDIAKALALG 277 (326)
T ss_pred HHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHhC
Confidence 4566666665 7898875 699999999999876
No 224
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=51.77 E-value=85 Score=28.63 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHHhCCCCEEE
Q 025657 214 SLNWKDVKWLQTITSLPILV 233 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivl 233 (249)
.++-.-+.++|+.|.|||++
T Consensus 200 tLDi~aV~~~kq~THLPViv 219 (286)
T COG2876 200 TLDISAVPILKQETHLPVIV 219 (286)
T ss_pred eechHHHHHHHhhcCCCEEE
Confidence 56677899999999999998
No 225
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=51.69 E-value=28 Score=30.66 Aligned_cols=37 Identities=11% Similarity=0.166 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHhC-CCCEEEE-ccCCHHHHHHHhhCC
Q 025657 213 RSLNWKDVKWLQTIT-SLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 213 ~~~tW~dl~wlr~~~-~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
.+.+++.++.+|+.+ +.||++= ||-++|||+.+.++|
T Consensus 163 ~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aG 201 (223)
T TIGR01768 163 EPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAG 201 (223)
T ss_pred CCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcC
Confidence 356789999999998 8999775 699999999998865
No 226
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=51.02 E-value=45 Score=29.82 Aligned_cols=58 Identities=26% Similarity=0.280 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChH-HHHHHHHHHHHcCCc
Q 025657 91 EGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRN-VDAQLVKRAERAGFK 154 (249)
Q Consensus 91 ~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~-~~~~li~rA~~aG~~ 154 (249)
+|=..+.+.|++.|+++..+-....+++.+.+.. .|+|+ .-++ ....|++.+.+.|-.
T Consensus 76 ~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~~---d~lkI---~s~~~~n~~LL~~~a~~gkP 134 (260)
T TIGR01361 76 EGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEYA---DILQI---GARNMQNFELLKEVGKQGKP 134 (260)
T ss_pred HHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhhC---CEEEE---CcccccCHHHHHHHhcCCCc
Confidence 3445799999999999999988888999888663 48887 3332 223688877776653
No 227
>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP
Probab=50.90 E-value=66 Score=29.55 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCCcEEEEeecCCC
Q 025657 142 AQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 142 ~~li~rA~~aG~~alvvTvD~p~ 164 (249)
.+++++|.++|....+-||+.+.
T Consensus 266 ~~~V~~ah~~Gl~V~~wTvn~~~ 288 (318)
T cd08600 266 TDLVKDAHEAGLEVHPYTVRKDA 288 (318)
T ss_pred HHHHHHHHHcCCEEEEEeccCCc
Confidence 37899999999999999999764
No 228
>PLN02775 Probable dihydrodipicolinate reductase
Probab=50.82 E-value=1.7e+02 Score=26.77 Aligned_cols=82 Identities=11% Similarity=0.189 Sum_probs=57.3
Q ss_pred hHHHHHHHHhhcccceeccccCCCCCCccceeecCccccccee--------e------ccc-cccccCCChhhHHHHHHH
Q 025657 36 QWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIM--------I------APT-AFQKMAHPEGECATARAA 100 (249)
Q Consensus 36 e~t~~~N~~af~~~~l~pr~l~~v~~~d~st~llG~~~~~Pi~--------i------aP~-g~~~l~h~~gE~~~AraA 100 (249)
+.+..+-..+ ++..|.+.+.+.-...|..+++.|. ..|+. + -|- -.--+.||++=....+.|
T Consensus 24 G~~~~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g~--~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~ 100 (286)
T PLN02775 24 GHAVAEAAVS-AGLQLVPVSFTGPAGVGVTVEVCGV--EVRLVGPSEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELY 100 (286)
T ss_pred HHHHHHHHhc-CCCEEEEEeccccccccccceeccc--eeeeecCccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHH
Confidence 4555666777 8899999877755444555677775 44443 1 132 234566898888999999
Q ss_pred HhcCCcEEecCCCCCCHHHHH
Q 025657 101 SAAGTIMTLSSWATSSVEEVS 121 (249)
Q Consensus 101 ~~~gi~~~lss~ss~sleeia 121 (249)
.+.|++++++|.+- +-|++.
T Consensus 101 ~~~g~~~VvGTTG~-~~e~l~ 120 (286)
T PLN02775 101 CKNGLPFVMGTTGG-DRDRLL 120 (286)
T ss_pred HHCCCCEEEECCCC-CHHHHH
Confidence 99999999999874 445553
No 229
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=50.52 E-value=33 Score=29.91 Aligned_cols=37 Identities=11% Similarity=0.243 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 213 RSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 213 ~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
++...+-++|+++..+.|++.=|=.++|++..+.++|
T Consensus 149 ~p~gl~~l~~~~~~~~iPvvAIGGI~~~n~~~~~~~G 185 (221)
T PRK06512 149 HPRNLSLAEWWAEMIEIPCIVQAGSDLASAVEVAETG 185 (221)
T ss_pred CCCChHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHhC
Confidence 4567788999999999999999988999999998876
No 230
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=50.20 E-value=93 Score=29.19 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 213 RSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 213 ~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
+++.|+.++|+++..+.|++.=|=.+++++....++|
T Consensus 279 ~~~Gle~l~~~~~~~~iPv~AiGGI~~~ni~~l~~~G 315 (347)
T PRK02615 279 APAGLEYLKYAAKEAPIPWFAIGGIDKSNIPEVLQAG 315 (347)
T ss_pred CCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcC
Confidence 3678999999999999999999877899999888776
No 231
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=49.99 E-value=1.1e+02 Score=27.69 Aligned_cols=85 Identities=16% Similarity=0.018 Sum_probs=50.9
Q ss_pred cceeeccccccccCCChhhHHHHHHHHhcCCcE--EecCCC---CCCHHHHH-------hcCC--CceeEEEccccChHH
Q 025657 75 MPIMIAPTAFQKMAHPEGECATARAASAAGTIM--TLSSWA---TSSVEEVS-------STGP--GIRFFQLYVTKHRNV 140 (249)
Q Consensus 75 ~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~--~lss~s---s~sleeia-------~~~~--~~~wfQlY~~~d~~~ 140 (249)
.|.++.|+.-.+-++.++=..+.+-..+.|+-- +.||.+ +.|.||-. +... -+.+.++-- .+-+.
T Consensus 5 ~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ 83 (294)
T TIGR02313 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA-LNHDE 83 (294)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc-chHHH
Confidence 466777866555445555556667666777643 344433 34555432 2222 234555532 34455
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 025657 141 DAQLVKRAERAGFKAIALTV 160 (249)
Q Consensus 141 ~~~li~rA~~aG~~alvvTv 160 (249)
+.++.+.|+++|+.++++.-
T Consensus 84 ai~~a~~A~~~Gad~v~v~p 103 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVIV 103 (294)
T ss_pred HHHHHHHHHHcCCCEEEEcC
Confidence 67888899999999988875
No 232
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=49.72 E-value=1.1e+02 Score=26.22 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHhCCCCEEE-EccCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTITSLPILV-KGVLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~~lPivl-KGIl~~eDA~~A~~~~ 249 (249)
.+++-++.+++.++.|+++ -||-+.+|++.+.+.|
T Consensus 61 ~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G 96 (232)
T TIGR03572 61 PLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLG 96 (232)
T ss_pred CCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcC
Confidence 3566788899999999877 5799999998887654
No 233
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=49.58 E-value=48 Score=29.02 Aligned_cols=104 Identities=16% Similarity=0.082 Sum_probs=65.4
Q ss_pred cChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhh-hhcCCC
Q 025657 136 KHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVA-NQIDRS 214 (249)
Q Consensus 136 ~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 214 (249)
.+.+....+.+..-+.|+++|=+|.-+|....=.+.++..|. ---+....+.... ........-. -...|.
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~-------q~~~a~~aGa~fiVsP~ 93 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPE-------QARQAIAAGAQFIVSPG 93 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHH-------HHHHHHHcCCCEEECCC
Confidence 677888899999999999999999999998888888887663 0001111111100 0000000001 123566
Q ss_pred CCHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
++-+-+ .....-+.|+ +=|++||-++..|.++|
T Consensus 94 ~~~ev~-~~a~~~~ip~-~PG~~TptEi~~Ale~G 126 (211)
T COG0800 94 LNPEVA-KAANRYGIPY-IPGVATPTEIMAALELG 126 (211)
T ss_pred CCHHHH-HHHHhCCCcc-cCCCCCHHHHHHHHHcC
Confidence 654444 4455556665 45999999999999987
No 234
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=49.39 E-value=1.3e+02 Score=27.14 Aligned_cols=84 Identities=12% Similarity=0.014 Sum_probs=54.2
Q ss_pred cceeeccccccccCCChhhHHHHHHHHhcCCcEE--ecCCC---CCCHHHH-------HhcCC--CceeEEEccccChHH
Q 025657 75 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMT--LSSWA---TSSVEEV-------SSTGP--GIRFFQLYVTKHRNV 140 (249)
Q Consensus 75 ~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~--lss~s---s~sleei-------a~~~~--~~~wfQlY~~~d~~~ 140 (249)
.|.++.|+--.+-++.++=..+.+-..+.|+--+ .||.+ +.|.||- .+... .+.+.++- .+-+.
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ 87 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSD 87 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHH
Confidence 4566777654444456665677787878886543 45533 3455543 22222 35678874 35667
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 025657 141 DAQLVKRAERAGFKAIALTV 160 (249)
Q Consensus 141 ~~~li~rA~~aG~~alvvTv 160 (249)
+.++.+.|+++|++++++.-
T Consensus 88 ai~~a~~a~~~Gadav~~~p 107 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLLP 107 (296)
T ss_pred HHHHHHHHHHhCCCEEEECC
Confidence 77889999999999998854
No 235
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=49.16 E-value=94 Score=27.29 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhC
Q 025657 215 LNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSK 248 (249)
Q Consensus 215 ~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~ 248 (249)
-+|+.++.|++.++.||.+=+ +.+++|++.+++.
T Consensus 167 ~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~ 201 (265)
T cd03315 167 DDLEGRAALARATDTPIMADESAFTPHDAFRELAL 201 (265)
T ss_pred ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHh
Confidence 468889999999999998866 5678998887654
No 236
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=49.09 E-value=1.2e+02 Score=28.08 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=24.7
Q ss_pred HHHHHHHH-hCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 218 KDVKWLQT-ITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 218 ~dl~wlr~-~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
+.|..+++ ..+.||+.= ||.+++|+.+|+..|
T Consensus 243 ~~l~~~~~~~~~ipVIasGGI~~~~di~kaLalG 276 (333)
T TIGR02151 243 ASLLEVRSDAPDAPIIASGGLRTGLDVAKAIALG 276 (333)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCHHHHHHHHHhC
Confidence 45666676 567888775 588999999999876
No 237
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=48.21 E-value=1e+02 Score=27.73 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHh-CCCCEEEEccCCHHHHHHHhh
Q 025657 213 RSLNWKDVKWLQTI-TSLPILVKGVLTAEDGSKLLS 247 (249)
Q Consensus 213 ~~~tW~dl~wlr~~-~~lPivlKGIl~~eDA~~A~~ 247 (249)
.+.+|++++.+|+. .+.|++|=|=+++|....+++
T Consensus 184 ~~~d~~~l~~vr~~~~~~PvllggGvt~eNv~e~l~ 219 (257)
T TIGR00259 184 TEVDLELLKLAKETVKDTPVLAGSGVNLENVEELLS 219 (257)
T ss_pred CCCCHHHHHHHHhccCCCeEEEECCCCHHHHHHHHh
Confidence 46899999999984 468999999999999998876
No 238
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=48.11 E-value=1.6e+02 Score=27.57 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=24.9
Q ss_pred HHHHHHHHh-CCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 218 KDVKWLQTI-TSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 218 ~dl~wlr~~-~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
+-|..+++. .+.||+.= ||.+++|+.+|+..|
T Consensus 250 ~~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~G 283 (352)
T PRK05437 250 QSLLEARSLLPDLPIIASGGIRNGLDIAKALALG 283 (352)
T ss_pred HHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcC
Confidence 456666666 47888765 699999999999876
No 239
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=47.57 E-value=1.2e+02 Score=28.66 Aligned_cols=30 Identities=10% Similarity=0.080 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCcEEecCCCCCCHHHHHhc
Q 025657 94 CATARAASAAGTIMTLSSWATSSVEEVSST 123 (249)
Q Consensus 94 ~~~AraA~~~gi~~~lss~ss~sleeia~~ 123 (249)
..+.+++++.|.|+.|++.-+.++||+..+
T Consensus 198 ~~LL~~va~t~kPVllk~G~~~t~ee~~~A 227 (352)
T PRK13396 198 FSLLKKVGAQDKPVLLKRGMAATIDEWLMA 227 (352)
T ss_pred HHHHHHHHccCCeEEEeCCCCCCHHHHHHH
Confidence 367788888888888888777788887654
No 240
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=47.47 E-value=41 Score=27.40 Aligned_cols=37 Identities=16% Similarity=0.385 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 213 RSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 213 ~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
...+|+.++++++..+.|+++=|=.+++++..+.++|
T Consensus 135 ~~~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~G 171 (196)
T cd00564 135 PPLGLELLREIAELVEIPVVAIGGITPENAAEVLAAG 171 (196)
T ss_pred CCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcC
Confidence 3567999999999889999988766899999988876
No 241
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=47.04 E-value=48 Score=28.22 Aligned_cols=91 Identities=16% Similarity=0.177 Sum_probs=48.0
Q ss_pred ecCcccccceeeccccccccCCChhhH----HHHHHHHhcCCcEEec-CCCCC----CHHHHHhcCCCceeEEEccccCh
Q 025657 68 VLGFNISMPIMIAPTAFQKMAHPEGEC----ATARAASAAGTIMTLS-SWATS----SVEEVSSTGPGIRFFQLYVTKHR 138 (249)
Q Consensus 68 llG~~~~~Pi~iaP~g~~~l~h~~gE~----~~AraA~~~gi~~~ls-s~ss~----sleeia~~~~~~~wfQlY~~~d~ 138 (249)
.+...+..|+.+-.+... .++-.. .+-+.+++ |+..++. +..+. -+|.+++..+=...+-| |.+|+
T Consensus 52 ~~A~~lgipl~~i~~~~~---~e~~~~~l~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~~~~~~gl~~~~PL-W~~~~ 126 (194)
T cd01994 52 LQAEAMGIPLIRIEISGE---EEDEVEDLKELLRKLKEE-GVDAVVFGAILSEYQRTRVERVCERLGLEPLAPL-WGRDQ 126 (194)
T ss_pred HHHHHcCCcEEEEeCCCC---chHHHHHHHHHHHHHHHc-CCCEEEECccccHHHHHHHHHHHHHcCCEEEecc-cCCCH
Confidence 345556677766555321 222222 33333444 6664432 22221 26667654431122222 23455
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 025657 139 NVDAQLVKRAERAGFKAIALTVDTPRLG 166 (249)
Q Consensus 139 ~~~~~li~rA~~aG~~alvvTvD~p~~g 166 (249)
+ ++++...+.|++++++.|++..++
T Consensus 127 ~---~ll~e~~~~g~~~~iv~v~~~~L~ 151 (194)
T cd01994 127 E---ELLREMIEAGFKAIIIKVAAEGLD 151 (194)
T ss_pred H---HHHHHHHHcCCeEEEEEeccCCCC
Confidence 3 566666799999999999987654
No 242
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=46.94 E-value=33 Score=32.22 Aligned_cols=36 Identities=11% Similarity=0.191 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
...|+..+.+|+.++.||+.= ||.++++|..+++.|
T Consensus 275 ~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g 311 (370)
T cd02929 275 GHQEPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSG 311 (370)
T ss_pred cccHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 345788899999999999976 677999999999865
No 243
>PLN02417 dihydrodipicolinate synthase
Probab=46.85 E-value=1.5e+02 Score=26.45 Aligned_cols=84 Identities=10% Similarity=-0.108 Sum_probs=44.8
Q ss_pred ceeeccccccccCCChhhHHHHHHHHhcCCcEE--ecCCC---CCCHHHH-------HhcCCC--ceeEEEccccChHHH
Q 025657 76 PIMIAPTAFQKMAHPEGECATARAASAAGTIMT--LSSWA---TSSVEEV-------SSTGPG--IRFFQLYVTKHRNVD 141 (249)
Q Consensus 76 Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~--lss~s---s~sleei-------a~~~~~--~~wfQlY~~~d~~~~ 141 (249)
|-++.|+.-.+-++.++=..+.+-.-+.|+.-+ .||.+ +.|.||- .+...+ +...++-- .+-..+
T Consensus 7 ~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~-~~t~~~ 85 (280)
T PLN02417 7 TAIKTPYLPDGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGS-NSTREA 85 (280)
T ss_pred eeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCC-ccHHHH
Confidence 445566544444455554466666666666543 34433 3344433 222222 33444421 244556
Q ss_pred HHHHHHHHHcCCcEEEEee
Q 025657 142 AQLVKRAERAGFKAIALTV 160 (249)
Q Consensus 142 ~~li~rA~~aG~~alvvTv 160 (249)
.++.+.|+++|+.++++.-
T Consensus 86 i~~a~~a~~~Gadav~~~~ 104 (280)
T PLN02417 86 IHATEQGFAVGMHAALHIN 104 (280)
T ss_pred HHHHHHHHHcCCCEEEEcC
Confidence 6778888888888887753
No 244
>PRK00967 hypothetical protein; Provisional
Probab=46.04 E-value=29 Score=26.83 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHcCCcEEE-EeecCCCC
Q 025657 138 RNVDAQLVKRAERAGFKAIA-LTVDTPRL 165 (249)
Q Consensus 138 ~~~~~~li~rA~~aG~~alv-vTvD~p~~ 165 (249)
++...+|.++|++.|++||+ |.+|+...
T Consensus 59 ~eA~~rm~~~A~~~GAnAIIgvr~d~~~~ 87 (105)
T PRK00967 59 DIAIDRMKEEAKQKGANAIVGMRFDSSSI 87 (105)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEeeee
Confidence 45677999999999999998 88887664
No 245
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=45.88 E-value=1.6e+02 Score=26.05 Aligned_cols=83 Identities=18% Similarity=0.019 Sum_probs=49.9
Q ss_pred ceeeccccccccCCChhhHHHHHHHHhcCCcEE--ecCCC---CCCHHHH-------HhcCC--CceeEEEccccChHHH
Q 025657 76 PIMIAPTAFQKMAHPEGECATARAASAAGTIMT--LSSWA---TSSVEEV-------SSTGP--GIRFFQLYVTKHRNVD 141 (249)
Q Consensus 76 Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~--lss~s---s~sleei-------a~~~~--~~~wfQlY~~~d~~~~ 141 (249)
|..+.|+.-.+-++.++=....+-..+.|+--. .||.+ +.|.||- ++... -+.+.++-- .+-+.+
T Consensus 6 ~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~ 84 (284)
T cd00950 6 TALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-NNTAEA 84 (284)
T ss_pred eeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-ccHHHH
Confidence 556667654444555555577777777776443 33332 3454433 22222 244566632 345667
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 025657 142 AQLVKRAERAGFKAIALT 159 (249)
Q Consensus 142 ~~li~rA~~aG~~alvvT 159 (249)
.++.+.|+++|++++++.
T Consensus 85 ~~~a~~a~~~G~d~v~~~ 102 (284)
T cd00950 85 IELTKRAEKAGADAALVV 102 (284)
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 788899999999998887
No 246
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=45.67 E-value=45 Score=30.18 Aligned_cols=25 Identities=8% Similarity=0.321 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 140 VDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 140 ~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
.+.+++++++++|.+..+.|||.+.
T Consensus 249 ~~~~~v~~~~~~G~~v~vWTVNd~~ 273 (300)
T cd08612 249 MRPSLFRHLQKRGIQVYGWVLNDEE 273 (300)
T ss_pred CCHHHHHHHHHCCCEEEEeecCCHH
Confidence 4678999999999999999999754
No 247
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=45.59 E-value=55 Score=30.85 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=39.0
Q ss_pred hhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcE
Q 025657 92 GECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKA 155 (249)
Q Consensus 92 gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~a 155 (249)
|=..+.+++.+.|++++..-+....++.+.+.. -++|+=-..- .+..|++.+.+.|-..
T Consensus 153 gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~~---d~lqIga~~~--~n~~LL~~va~t~kPV 211 (352)
T PRK13396 153 ALELLAAAREATGLGIITEVMDAADLEKIAEVA---DVIQVGARNM--QNFSLLKKVGAQDKPV 211 (352)
T ss_pred HHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhhC---CeEEECcccc--cCHHHHHHHHccCCeE
Confidence 334788888889999887777777777777653 4777722111 2247777777776543
No 248
>PRK07695 transcriptional regulator TenI; Provisional
Probab=45.08 E-value=47 Score=28.03 Aligned_cols=36 Identities=17% Similarity=0.331 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
...|+.++++++..+.||+.=|=.+++++..+.+.|
T Consensus 135 ~~g~~~l~~~~~~~~ipvia~GGI~~~~~~~~~~~G 170 (201)
T PRK07695 135 ARGLEELSDIARALSIPVIAIGGITPENTRDVLAAG 170 (201)
T ss_pred CCCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcC
Confidence 458999999999999999988844999999988876
No 249
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=45.00 E-value=11 Score=35.16 Aligned_cols=45 Identities=24% Similarity=0.229 Sum_probs=33.0
Q ss_pred chHHHHHHHHhhcccceeccccCCCCCCccceeecCcccccceeecc
Q 025657 35 DQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAP 81 (249)
Q Consensus 35 de~t~~~N~~af~~~~l~pr~l~~v~~~d~st~llG~~~~~Pi~iaP 81 (249)
-|.+.|--..| ..|.+.||-=.. .+..+.|++||++++-||++|.
T Consensus 57 ~E~sHrlAv~a-as~gl~Pr~~~~-d~~~L~~k~~g~~f~NPiglAA 101 (398)
T KOG1436|consen 57 PEFSHRLAVLA-ASWGLLPRDRVA-DDASLETKVLGRKFSNPIGLAA 101 (398)
T ss_pred HHHHHHHHHHH-HHhCCCchhccC-CccchhhHHhhhhccCchhhhh
Confidence 35555555543 678899986443 3457888999999999999976
No 250
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=44.86 E-value=1.4e+02 Score=28.07 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCcEEecCCCCCCHHHHHhc
Q 025657 94 CATARAASAAGTIMTLSSWATSSVEEVSST 123 (249)
Q Consensus 94 ~~~AraA~~~gi~~~lss~ss~sleeia~~ 123 (249)
..+.+++++.|.|+.||+.-..+++|+..+
T Consensus 215 ~~LL~~~a~~gkPVilk~G~~~t~~e~~~A 244 (360)
T PRK12595 215 FELLKAAGRVNKPVLLKRGLSATIEEFIYA 244 (360)
T ss_pred HHHHHHHHccCCcEEEeCCCCCCHHHHHHH
Confidence 377888888888888888777788888654
No 251
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=44.84 E-value=3e+02 Score=26.61 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=19.0
Q ss_pred CCCEEEE-ccCCHHHHHHHhhCC
Q 025657 228 SLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 228 ~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
+.||+.= ||.+++++.-|...|
T Consensus 219 ~ipViAAGGI~tg~~vaAA~alG 241 (418)
T cd04742 219 PIRVGAAGGIGTPEAAAAAFALG 241 (418)
T ss_pred CceEEEECCCCCHHHHHHHHHcC
Confidence 6899987 899999999887765
No 252
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=44.45 E-value=2.2e+02 Score=24.91 Aligned_cols=37 Identities=0% Similarity=-0.097 Sum_probs=22.6
Q ss_pred CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 126 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
.+.-.|++ -.|.+...+..+++++. +..|=+..-+|+
T Consensus 73 ~p~~vqi~-g~~~~~~~~aa~~~~~~-~~~ielN~gCP~ 109 (233)
T cd02911 73 VLVGVNVR-SSSLEPLLNAAALVAKN-AAILEINAHCRQ 109 (233)
T ss_pred CeEEEEec-CCCHHHHHHHHHHHhhc-CCEEEEECCCCc
Confidence 45678886 35566666777777663 455545555544
No 253
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=44.25 E-value=75 Score=28.92 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=19.7
Q ss_pred cChHHHHHHHHHHHHcCCcEEEEeecCCCCCC
Q 025657 136 KHRNVDAQLVKRAERAGFKAIALTVDTPRLGR 167 (249)
Q Consensus 136 ~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~ 167 (249)
.|++...+. +++.|+.+|.+.|-+....+
T Consensus 155 TdP~~a~~F---v~~TgvD~LAvaiGt~HG~y 183 (287)
T PF01116_consen 155 TDPEEAKEF---VEETGVDALAVAIGTAHGMY 183 (287)
T ss_dssp SSHHHHHHH---HHHHTTSEEEE-SSSBSSSB
T ss_pred cCHHHHHHH---HHHhCCCEEEEecCcccccc
Confidence 466655544 46789999999999866433
No 254
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=44.20 E-value=1.1e+02 Score=28.88 Aligned_cols=65 Identities=11% Similarity=0.191 Sum_probs=33.0
Q ss_pred hhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCC-CceeEEEccccCh---------------HHHHHHHHHHHHcCCcE
Q 025657 92 GECATARAASAAGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKHR---------------NVDAQLVKRAERAGFKA 155 (249)
Q Consensus 92 gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~-~~~wfQlY~~~d~---------------~~~~~li~rA~~aG~~a 155 (249)
.|....+...+.+....+...+.+..++|..+.. +..++.++..-.+ +...+.++.|++.|+..
T Consensus 53 ~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v 132 (378)
T PRK11858 53 DEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYV 132 (378)
T ss_pred HHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 3444444444455555555555445555543322 3456666655433 34445666666666653
Q ss_pred E
Q 025657 156 I 156 (249)
Q Consensus 156 l 156 (249)
.
T Consensus 133 ~ 133 (378)
T PRK11858 133 S 133 (378)
T ss_pred E
Confidence 3
No 255
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=44.09 E-value=16 Score=22.76 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=15.9
Q ss_pred HHHHHHHHhCCCCEEEEcc-CCHHHHHHHh
Q 025657 218 KDVKWLQTITSLPILVKGV-LTAEDGSKLL 246 (249)
Q Consensus 218 ~dl~wlr~~~~lPivlKGI-l~~eDA~~A~ 246 (249)
+|+=|+-. ..-.+--.|. ++||||+.|+
T Consensus 4 EdlyWm~~-~~Qq~~pe~l~LtpEDAvEaL 32 (35)
T PF08383_consen 4 EDLYWMAN-YQQQMNPEALGLTPEDAVEAL 32 (35)
T ss_pred hhhccccc-chhhcChhhcCCCHHHHHHHH
Confidence 45555533 1222223444 8999999886
No 256
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=44.08 E-value=57 Score=29.58 Aligned_cols=70 Identities=14% Similarity=0.108 Sum_probs=46.6
Q ss_pred hHHHHHHHHhcCCcEEecCCCCC----C-HHHHH-------hcCC-CceeEEEccccChHHHHHHHHHHHHcCCcEEEEe
Q 025657 93 ECATARAASAAGTIMTLSSWATS----S-VEEVS-------STGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALT 159 (249)
Q Consensus 93 E~~~AraA~~~gi~~~lss~ss~----s-leeia-------~~~~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvT 159 (249)
=.++.+||++.+.|.++...-+. + ++.++ +... .|...+| |.....+.+++|-++||..+ -
T Consensus 29 ~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhl----DH~~~~e~i~~ai~~Gf~sV--m 102 (282)
T TIGR01859 29 TQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHL----DHGSSYESCIKAIKAGFSSV--M 102 (282)
T ss_pred HHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEEC----CCCCCHHHHHHHHHcCCCEE--E
Confidence 34899999999999998653221 2 44442 2233 3444554 77767789999999999886 5
Q ss_pred ecCCCCCCc
Q 025657 160 VDTPRLGRR 168 (249)
Q Consensus 160 vD~p~~g~R 168 (249)
+|.......
T Consensus 103 id~s~l~~~ 111 (282)
T TIGR01859 103 IDGSHLPFE 111 (282)
T ss_pred ECCCCCCHH
Confidence 566555443
No 257
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=43.98 E-value=56 Score=28.87 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 140 VDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 140 ~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
.+.+++++++++|.+..+.|||.+.
T Consensus 216 ~~~~~v~~~~~~G~~v~vWTVn~~~ 240 (258)
T cd08573 216 ISSAYVRYWRARGIRVIAWTVNTPT 240 (258)
T ss_pred cCHHHHHHHHHCCCEEEEEecCCHH
Confidence 5678999999999999999999755
No 258
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=43.92 E-value=1.6e+02 Score=26.23 Aligned_cols=84 Identities=17% Similarity=0.089 Sum_probs=46.7
Q ss_pred ceeeccccccccCCChhhHHHHHHHHhcCCcEE--ecCCC---CCCHHHH-------HhcCC--CceeEEEccccChHHH
Q 025657 76 PIMIAPTAFQKMAHPEGECATARAASAAGTIMT--LSSWA---TSSVEEV-------SSTGP--GIRFFQLYVTKHRNVD 141 (249)
Q Consensus 76 Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~--lss~s---s~sleei-------a~~~~--~~~wfQlY~~~d~~~~ 141 (249)
|..+.|+--.+-++.++=...++-.-+.|+.-. .+|.+ +.|.+|= .+..+ .+.+.++= ..+-+.+
T Consensus 7 ~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~~ 85 (289)
T PF00701_consen 7 PALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-ANSTEEA 85 (289)
T ss_dssp EEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHHH
T ss_pred eeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc-chhHHHH
Confidence 455667554443445454577777777777543 34432 2344432 22222 34566652 2356777
Q ss_pred HHHHHHHHHcCCcEEEEee
Q 025657 142 AQLVKRAERAGFKAIALTV 160 (249)
Q Consensus 142 ~~li~rA~~aG~~alvvTv 160 (249)
.++.+.|+++|+.+++++-
T Consensus 86 i~~a~~a~~~Gad~v~v~~ 104 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIP 104 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHhhcCceEEEEec
Confidence 8999999999999999875
No 259
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=43.82 E-value=2.1e+02 Score=26.37 Aligned_cols=89 Identities=18% Similarity=0.119 Sum_probs=56.5
Q ss_pred cCcccccceeeccccccccCCChhhHHHHHHHHhcCC-cEEecCCCCC---------CHHHHHhc-CCCceeEEEccccC
Q 025657 69 LGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGT-IMTLSSWATS---------SVEEVSST-GPGIRFFQLYVTKH 137 (249)
Q Consensus 69 lG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi-~~~lss~ss~---------sleeia~~-~~~~~wfQlY~~~d 137 (249)
-...+..++++|||.+.. |...-+-+++.|. -.+.|-+-+. ++..+... ...+.-.||. -.|
T Consensus 5 ~~~~~~~~~~lAPM~gvt------d~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-gsd 77 (323)
T COG0042 5 GLIELRNRVILAPMAGVT------DLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLG-GSD 77 (323)
T ss_pred ccccccCcEEEecCCCCc------cHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEec-CCC
Confidence 345678899999977553 5556666666666 4444332211 12222211 1256789995 467
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 138 RNVDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 138 ~~~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
.+...+-.+.+++.||..|=+..=+|+
T Consensus 78 p~~l~eaA~~~~~~g~~~IdlN~GCP~ 104 (323)
T COG0042 78 PELLAEAAKIAEELGADIIDLNCGCPS 104 (323)
T ss_pred HHHHHHHHHHHHhcCCCEEeeeCCCCh
Confidence 788888889999999888766666665
No 260
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed
Probab=43.27 E-value=61 Score=29.09 Aligned_cols=56 Identities=9% Similarity=0.120 Sum_probs=43.0
Q ss_pred CCcEEecCCCCCCHHHHHhcCC-----------CceeEEEccccChHHHHHHHHHHHHcCCcEEEEe
Q 025657 104 GTIMTLSSWATSSVEEVSSTGP-----------GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALT 159 (249)
Q Consensus 104 gi~~~lss~ss~sleeia~~~~-----------~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvT 159 (249)
+-.++--+.....+++|.+..| ..-|+.+...-+++...+++++-+++|++.|+|+
T Consensus 214 ~~k~~~~~~~~~~~~~~~~~~p~~~~ptv~~~~~~~~~av~~~~~~~~~~~~~~~l~~~ga~~i~~~ 280 (287)
T PRK00489 214 ESKYLMMNAPKEKLDAVIALLPGLESPTVSPLGDEGWVAVHAVVPEDLVWELMDKLKALGARGILVL 280 (287)
T ss_pred ceEEEEEeCCHHHHHHHHHhCCCCCCCcccCCCCCCeEEEEEEECHHHHHHHHHHHHHcCCCeEEEe
Confidence 3344444455567888876543 1259999998999999999999999999999875
No 261
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=43.19 E-value=46 Score=29.47 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHhCCC-CEEEEc-cCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITSL-PILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~l-PivlKG-Il~~eDA~~A~~~~ 249 (249)
..+.+.++.+++.++. |+++=| |-++|+|+.++++|
T Consensus 169 ~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~G 206 (232)
T PRK04169 169 PVPPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAG 206 (232)
T ss_pred CCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhC
Confidence 4568899999999998 999975 99999999987765
No 262
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=43.06 E-value=45 Score=32.32 Aligned_cols=113 Identities=17% Similarity=0.236 Sum_probs=70.4
Q ss_pred HhhcccceeccccC-CCCCCccceee-cCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHH
Q 025657 44 NAFSRILFRPRILR-DVSKIDMTTTV-LGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS 121 (249)
Q Consensus 44 ~af~~~~l~pr~l~-~v~~~d~st~l-lG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia 121 (249)
-.|+++-|+|.... ..+++|++|.| +-.++..|++-|||--. .|..+|.+-+.+|-.-++ .-+|+.|+=|
T Consensus 30 LtynDfliLPg~idF~s~eVsL~t~ltr~itl~tPlvsSpMDTV------tes~MAiaMAl~ggIg~I--HhNctpe~QA 101 (503)
T KOG2550|consen 30 LTYNDFLILPGFIDFASDEVSLQTKLTRNITLNTPLVSSPMDTV------TESEMAIAMALLGGIGFI--HHNCTPEDQA 101 (503)
T ss_pred ccccceeecccccccccccceeehhhhhcccccCceeccCCccc------chhHHHHHHHhcCCceee--ecCCCHHHHH
Confidence 46889999998776 34689999886 56788999999996533 466666666665544444 4467777654
Q ss_pred hcC------CCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 122 STG------PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 122 ~~~------~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
..- .....-+.-+......+-+.++-=+..||..+-+|-|.-.
T Consensus 102 ~~v~~vK~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~ 150 (503)
T KOG2550|consen 102 DMVRRVKNYENGFINNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKR 150 (503)
T ss_pred HHHHHHHHhhcccccCCcccCCcccchhhhhhcccccccccccccCCcc
Confidence 321 1111122222222223335555555789999999976544
No 263
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=42.88 E-value=1.1e+02 Score=21.20 Aligned_cols=56 Identities=16% Similarity=0.062 Sum_probs=34.1
Q ss_pred CCcEEecCCCCCCHHH-HHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEe
Q 025657 104 GTIMTLSSWATSSVEE-VSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALT 159 (249)
Q Consensus 104 gi~~~lss~ss~slee-ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvT 159 (249)
|.+..+-.......-+ +....++...+=+-..+....+.++++.|++.|++.+.+|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 25 GIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 6665543322222222 3333334445445445556678899999999999999999
No 264
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=42.77 E-value=77 Score=27.64 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCc--------EEecCCCCCCHHHHHhcCCCceeEEEccc-----------------------cChHHHH
Q 025657 94 CATARAASAAGTI--------MTLSSWATSSVEEVSSTGPGIRFFQLYVT-----------------------KHRNVDA 142 (249)
Q Consensus 94 ~~~AraA~~~gi~--------~~lss~ss~sleeia~~~~~~~wfQlY~~-----------------------~d~~~~~ 142 (249)
..+++.-++.|.. ++++|+...++..+.+..|..+..+++.. .......
T Consensus 129 ~~v~~~l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (256)
T cd08601 129 EKLLATLDKYGLLTDNLKNGQVIIQSFSKESLKKLHQLNPNIPLVQLLWYGEGAETYDKWLDEIKEYAIGIGPSIADADP 208 (256)
T ss_pred HHHHHHHHHcCCCcccCCCCCEEEecCCHHHHHHHHHhCCCCcEEEEeccCcccccchhHHHHHHhcCeEeCCchhhcCH
Confidence 3455555666543 57777776677777665553222222111 1122345
Q ss_pred HHHHHHHHcCCcEEEEeecCC
Q 025657 143 QLVKRAERAGFKAIALTVDTP 163 (249)
Q Consensus 143 ~li~rA~~aG~~alvvTvD~p 163 (249)
+++++++++|.+..+.|||.+
T Consensus 209 ~~v~~~~~~g~~v~~wTvn~~ 229 (256)
T cd08601 209 WMVHLIHKKGLLVHPYTVNEK 229 (256)
T ss_pred HHHHHHHHCCCEEEEEecCCH
Confidence 788888888888888888863
No 265
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=42.70 E-value=1.9e+02 Score=25.44 Aligned_cols=84 Identities=15% Similarity=0.084 Sum_probs=48.2
Q ss_pred ceeeccccccccCCChhhHHHHHHHHhcCCcE--EecCCC---CCCHHHH-------HhcCC--CceeEEEccccChHHH
Q 025657 76 PIMIAPTAFQKMAHPEGECATARAASAAGTIM--TLSSWA---TSSVEEV-------SSTGP--GIRFFQLYVTKHRNVD 141 (249)
Q Consensus 76 Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~--~lss~s---s~sleei-------a~~~~--~~~wfQlY~~~d~~~~ 141 (249)
|..+.|+.-.+-++.++=....+-..+.|+-- +.||.+ +.|.||= .+..+ .+.+.++-- .+-+.+
T Consensus 3 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~ 81 (281)
T cd00408 3 PALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA-NSTREA 81 (281)
T ss_pred CCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC-ccHHHH
Confidence 55666765454445555556777777766644 334433 3354432 22222 344555532 234457
Q ss_pred HHHHHHHHHcCCcEEEEee
Q 025657 142 AQLVKRAERAGFKAIALTV 160 (249)
Q Consensus 142 ~~li~rA~~aG~~alvvTv 160 (249)
.++.+.|+++|+.++++.-
T Consensus 82 i~~a~~a~~~Gad~v~v~p 100 (281)
T cd00408 82 IELARHAEEAGADGVLVVP 100 (281)
T ss_pred HHHHHHHHHcCCCEEEECC
Confidence 7888889999999988843
No 266
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=42.54 E-value=38 Score=31.15 Aligned_cols=35 Identities=9% Similarity=0.181 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
..++.++.||+.++.||+.= ||.+++||+.+++.|
T Consensus 277 ~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g 312 (336)
T cd02932 277 YQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESG 312 (336)
T ss_pred ccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 34577888999999999985 567999999999865
No 267
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=42.26 E-value=64 Score=33.21 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=54.7
Q ss_pred HHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCC
Q 025657 117 VEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMD 196 (249)
Q Consensus 117 leeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~ 196 (249)
|.||+.+.|...++. +.-...++.+.-+++|+.+|=|-.|-..++
T Consensus 53 IaEiKraSPs~G~i~-----~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~------------------------------ 97 (695)
T PRK13802 53 IAEIKRASPSKGHLS-----DIPDPAALAREYEQGGASAISVLTEGRRFL------------------------------ 97 (695)
T ss_pred EEEeecCCCCCCcCC-----CCCCHHHHHHHHHHcCCcEEEEecCcCcCC------------------------------
Confidence 567877777433332 111223556666789999998888843310
Q ss_pred CCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 197 KTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
=+++||+.+|+.+++||+-|= |.++-....|..+|
T Consensus 98 ------------------Gs~~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~G 133 (695)
T PRK13802 98 ------------------GSLDDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHG 133 (695)
T ss_pred ------------------CCHHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcC
Confidence 146889999999999999998 77777777776654
No 268
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=42.09 E-value=37 Score=29.77 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
..+|+.++.+++..+.||++= ||.+.||++++++.|
T Consensus 60 ~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~G 96 (253)
T PRK02083 60 DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAG 96 (253)
T ss_pred cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcC
Confidence 357899999999999999885 799999999988765
No 269
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=41.93 E-value=45 Score=28.38 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 213 RSLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 213 ~~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
|.+--+-++|+.++++.|||-=| |.+-||+..|+.+|
T Consensus 129 PGv~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aG 166 (181)
T COG1954 129 PGVMPKVIKEITEKTHIPIIAGGLIETEEEVREALKAG 166 (181)
T ss_pred CcccHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhC
Confidence 45667889999999999999999 57889999999987
No 270
>COG0393 Uncharacterized conserved protein [Function unknown]
Probab=41.71 E-value=33 Score=26.84 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCcEEE-EeecCCCCC
Q 025657 139 NVDAQLVKRAERAGFKAIA-LTVDTPRLG 166 (249)
Q Consensus 139 ~~~~~li~rA~~aG~~alv-vTvD~p~~g 166 (249)
+...+|.++|++.|++|+| |-+|+...|
T Consensus 60 ~Al~rm~~~A~~lGAnAVVgvr~d~~~ig 88 (108)
T COG0393 60 EALERMVDEAEALGANAVVGVRFDYSTIG 88 (108)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEechhHhC
Confidence 4567899999999999987 667765543
No 271
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=41.19 E-value=86 Score=28.27 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=19.7
Q ss_pred HHHHHHHHHcCCcEEEEeecC
Q 025657 142 AQLVKRAERAGFKAIALTVDT 162 (249)
Q Consensus 142 ~~li~rA~~aG~~alvvTvD~ 162 (249)
.+++++|+++|.+..+.|||.
T Consensus 246 ~~~v~~a~~~Gl~v~~WTvn~ 266 (296)
T cd08559 246 TDLVKDAHKAGLLVHPYTFRN 266 (296)
T ss_pred hHHHHHHHHcCCEEEEEEecC
Confidence 689999999999999999997
No 272
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=41.05 E-value=45 Score=31.39 Aligned_cols=38 Identities=18% Similarity=0.064 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHhC---------CCCEEEEccC--CHHHHHHHhhCC
Q 025657 212 DRSLNWKDVKWLQTIT---------SLPILVKGVL--TAEDGSKLLSKE 249 (249)
Q Consensus 212 ~~~~tW~dl~wlr~~~---------~lPivlKGIl--~~eDA~~A~~~~ 249 (249)
.|.++|+-|+.|++.. +.|||+-|-. ..||-++|+++|
T Consensus 224 ~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde~i~~ai~~G 272 (350)
T PRK09197 224 NVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLEEIREAVSYG 272 (350)
T ss_pred CCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHHHHHHHHHCC
Confidence 4789999999999998 7999999985 457888898877
No 273
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=40.99 E-value=93 Score=29.19 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=26.3
Q ss_pred CHHHHHHHHHh-CCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 216 NWKDVKWLQTI-TSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 216 tW~dl~wlr~~-~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
+.+||+.+|+. .++||+-|= |.++-.-..|..+|
T Consensus 168 s~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~G 203 (338)
T PLN02460 168 SFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKG 203 (338)
T ss_pred CHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcC
Confidence 46889999997 999999998 67776666665544
No 274
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=40.89 E-value=36 Score=29.47 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 140 VDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 140 ~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
.+.+++++++++|.+..+.|||.+.
T Consensus 193 ~~~~~v~~~~~~Gl~v~vwTVn~~~ 217 (237)
T cd08583 193 VNDKLIEKLNKAGIYVYVYTINDLK 217 (237)
T ss_pred cCHHHHHHHHHCCCEEEEEeCCCHH
Confidence 4568888999999999999998744
No 275
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=40.77 E-value=42 Score=29.55 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHhCCCCEEE-EccCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTITSLPILV-KGVLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~~lPivl-KGIl~~eDA~~A~~~~ 249 (249)
.+|+-++.+++.++.||++ =||-+.||++++.+.|
T Consensus 61 ~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~G 96 (254)
T TIGR00735 61 TMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAG 96 (254)
T ss_pred hhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC
Confidence 4688899999999999877 5799999999998765
No 276
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.75 E-value=1.6e+02 Score=25.49 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=13.6
Q ss_pred EEccCCHHHHHHHhhCC
Q 025657 233 VKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 233 lKGIl~~eDA~~A~~~~ 249 (249)
+=|++||.++..|.++|
T Consensus 112 iPG~~TptEi~~a~~~G 128 (212)
T PRK05718 112 IPGVSTPSELMLGMELG 128 (212)
T ss_pred eCCCCCHHHHHHHHHCC
Confidence 34888888888888876
No 277
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=40.67 E-value=2e+02 Score=25.58 Aligned_cols=85 Identities=15% Similarity=-0.016 Sum_probs=48.1
Q ss_pred cceeeccccccccCCChhhHHHHHHHHhcCCcEE--ecCCC---CCCHHHH-------HhcCC--CceeEEEccccChHH
Q 025657 75 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMT--LSSWA---TSSVEEV-------SSTGP--GIRFFQLYVTKHRNV 140 (249)
Q Consensus 75 ~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~--lss~s---s~sleei-------a~~~~--~~~wfQlY~~~d~~~ 140 (249)
.|.++.|+--.+-++.++=..+.+-..+.|+--+ .||.+ +.|.||= .+... -+.+.++-- .+-+.
T Consensus 3 ~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~s~~~ 81 (285)
T TIGR00674 3 ITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGS-NATEE 81 (285)
T ss_pred cCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCC-ccHHH
Confidence 3556667654444455554466666666665443 34433 2344432 22222 345666532 24456
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 025657 141 DAQLVKRAERAGFKAIALTV 160 (249)
Q Consensus 141 ~~~li~rA~~aG~~alvvTv 160 (249)
+.++.+.|+++|+.+++++-
T Consensus 82 ~i~~a~~a~~~Gad~v~v~p 101 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVT 101 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcC
Confidence 77888888899999998875
No 278
>PRK12855 hypothetical protein; Provisional
Probab=40.64 E-value=33 Score=26.59 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHcCCcEEE-EeecCCC
Q 025657 138 RNVDAQLVKRAERAGFKAIA-LTVDTPR 164 (249)
Q Consensus 138 ~~~~~~li~rA~~aG~~alv-vTvD~p~ 164 (249)
++...+|.++|++.|+.|++ +.+|+..
T Consensus 59 ~~A~~rm~~~A~~lGAnAVVgvr~d~~~ 86 (103)
T PRK12855 59 DIAMEEMKTLARQKNANAIVGIDVDYEV 86 (103)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhH
Confidence 35667999999999999987 7777654
No 279
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=40.61 E-value=53 Score=29.27 Aligned_cols=91 Identities=19% Similarity=0.197 Sum_probs=54.5
Q ss_pred eeEEEccc---cChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhh
Q 025657 128 RFFQLYVT---KHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLA 204 (249)
Q Consensus 128 ~wfQlY~~---~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (249)
..|=.|+. .|.+.+.++++...++|+..|=+.+= |+-| ...+ .-+.
T Consensus 10 ~~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiP--------------fsDP------~aDG-----------pvIq 58 (256)
T TIGR00262 10 GAFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVP--------------FSDP------LADG-----------PTIQ 58 (256)
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCC--------------CCCC------CCcC-----------HHHH
Confidence 45556663 47788899999999999988755441 1111 0011 0111
Q ss_pred hHhhhhc----CCCCCHHHHHHHHHh-CCCCEEEEccCCH------HH-HHHHhhCC
Q 025657 205 SYVANQI----DRSLNWKDVKWLQTI-TSLPILVKGVLTA------ED-GSKLLSKE 249 (249)
Q Consensus 205 ~~~~~~~----~~~~tW~dl~wlr~~-~~lPivlKGIl~~------eD-A~~A~~~~ 249 (249)
......+ +..-.++.++.+|+. .+.|+++=+..+| |+ ...|.++|
T Consensus 59 ~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aG 115 (256)
T TIGR00262 59 AADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVG 115 (256)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcC
Confidence 1011111 112346788999977 8999999999988 55 66666655
No 280
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=40.54 E-value=1.6e+02 Score=25.91 Aligned_cols=33 Identities=3% Similarity=0.089 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHhCCCCEEEE-ccCCHHHHHHHhh
Q 025657 215 LNWKDVKWLQTITSLPILVK-GVLTAEDGSKLLS 247 (249)
Q Consensus 215 ~tW~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~ 247 (249)
.+.+-++.+++.++.||+.= ||-+.||-.++.+
T Consensus 175 ~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~ 208 (241)
T PRK14114 175 HDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQR 208 (241)
T ss_pred cCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHh
Confidence 45566788888888888864 6888888877765
No 281
>PRK01217 hypothetical protein; Provisional
Probab=40.52 E-value=33 Score=27.07 Aligned_cols=29 Identities=14% Similarity=0.332 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHcCCcEEE-EeecCCCCC
Q 025657 138 RNVDAQLVKRAERAGFKAIA-LTVDTPRLG 166 (249)
Q Consensus 138 ~~~~~~li~rA~~aG~~alv-vTvD~p~~g 166 (249)
++...+|.++|++.|++||+ |.+|+...|
T Consensus 66 ~eA~~rm~~~A~~lGAnAVVgvrfd~s~i~ 95 (114)
T PRK01217 66 NQALERMIDHAKELGANAVINVRFDSNEIS 95 (114)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEHHHhc
Confidence 35667899999999999987 777775543
No 282
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=40.46 E-value=47 Score=29.16 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHhC-CCCEEEE-ccCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTIT-SLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~-~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
.+-+-++.+++.+ +.|+++= ||-++|+|+.+.++|
T Consensus 161 ~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aG 197 (219)
T cd02812 161 GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAG 197 (219)
T ss_pred CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 3446788899998 9999996 499999999999865
No 283
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=40.14 E-value=30 Score=31.27 Aligned_cols=26 Identities=46% Similarity=0.635 Sum_probs=21.7
Q ss_pred HHH-HHcCCcEEEEeecCCCCCCchhh
Q 025657 146 KRA-ERAGFKAIALTVDTPRLGRREAD 171 (249)
Q Consensus 146 ~rA-~~aG~~alvvTvD~p~~g~Re~d 171 (249)
.-| +.+|-+++.||||+|...+|+..
T Consensus 35 ~la~~~lG~~v~AvTv~sP~~p~~e~e 61 (269)
T COG1606 35 KLAKEALGDNVVAVTVDSPYIPRREIE 61 (269)
T ss_pred HHHHHHhccceEEEEEecCCCChhhhh
Confidence 444 56899999999999999998764
No 284
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=39.87 E-value=37 Score=30.73 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCCEEE-EccCCHHHHHHHhhC
Q 025657 217 WKDVKWLQTITSLPILV-KGVLTAEDGSKLLSK 248 (249)
Q Consensus 217 W~dl~wlr~~~~lPivl-KGIl~~eDA~~A~~~ 248 (249)
=+.++++|+.++.|+++ -||.++|+|++..++
T Consensus 194 ~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~ 226 (265)
T COG0159 194 KELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA 226 (265)
T ss_pred HHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh
Confidence 35689999999999998 599999999987653
No 285
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=39.78 E-value=72 Score=27.32 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCCcEEEEeecCC
Q 025657 142 AQLVKRAERAGFKAIALTVDTP 163 (249)
Q Consensus 142 ~~li~rA~~aG~~alvvTvD~p 163 (249)
.+++++++++|.+..+.|||.+
T Consensus 184 ~~~v~~~~~~G~~v~~WTvn~~ 205 (226)
T cd08568 184 VELLRLLRKLGLKIVLWTVNDP 205 (226)
T ss_pred HHHHHHHHHCCCEEEEEcCCCH
Confidence 6899999999999999999975
No 286
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=39.44 E-value=39 Score=31.72 Aligned_cols=31 Identities=23% Similarity=0.145 Sum_probs=27.5
Q ss_pred HHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 219 DVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 219 dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
..+.+|+.++.||++=|..++++|+.+++.|
T Consensus 283 ~~~~ik~~~~~pv~~~G~~~~~~ae~~i~~G 313 (362)
T PRK10605 283 FREKVRARFHGVIIGAGAYTAEKAETLIGKG 313 (362)
T ss_pred HHHHHHHHCCCCEEEeCCCCHHHHHHHHHcC
Confidence 3477899999999999999999999999865
No 287
>PRK03732 hypothetical protein; Provisional
Probab=39.17 E-value=43 Score=26.42 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHcCCcEEE-EeecCCC
Q 025657 138 RNVDAQLVKRAERAGFKAIA-LTVDTPR 164 (249)
Q Consensus 138 ~~~~~~li~rA~~aG~~alv-vTvD~p~ 164 (249)
++...+|.++|++.|++||+ |.+|+..
T Consensus 66 ~~A~~rm~~~A~~lGAnAVVgvr~d~s~ 93 (114)
T PRK03732 66 EEALRRMALHAKELGANAVVNFRFATSN 93 (114)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEehh
Confidence 35667899999999999987 6666544
No 288
>PF01906 YbjQ_1: Putative heavy-metal-binding; InterPro: IPR002765 This family of bacterial proteins have not been characterised.; PDB: 3QKB_A 1VR4_D 1Y2I_D 2GTC_C.
Probab=39.07 E-value=35 Score=26.09 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=20.6
Q ss_pred ChHHHHHHHHHHHHcCCcEEE-EeecCCC
Q 025657 137 HRNVDAQLVKRAERAGFKAIA-LTVDTPR 164 (249)
Q Consensus 137 d~~~~~~li~rA~~aG~~alv-vTvD~p~ 164 (249)
-++..++|.++|++.|+.|++ +.+|...
T Consensus 58 r~~A~~~L~~~A~~~GAnAVIgv~~~~~~ 86 (105)
T PF01906_consen 58 REEALERLKEEAKELGANAVIGVRFDYSS 86 (105)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCEEEEEEEEeee
Confidence 345677999999999999987 6666543
No 289
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.77 E-value=1.2e+02 Score=25.65 Aligned_cols=121 Identities=9% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCC-CccccccccccccCCCCC
Q 025657 119 EVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLP-PHLTLKNYEGLYIGKMDK 197 (249)
Q Consensus 119 eia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p-~~~~~~~~~~~~~~~~~~ 197 (249)
|+.+.-...+-+-++-..+.+...++++.+-++|++.+=+|..++..-......+.-+..- .+...-.....
T Consensus 4 ~~~~~l~~~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~------- 76 (187)
T PRK07455 4 DWLAQLQQHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTLED------- 76 (187)
T ss_pred HHHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcHHH-------
Q ss_pred CCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 198 TDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
-......-....+.|-++ .++...++.-+.+.++ |+.+++++..|.+.|
T Consensus 77 -~~~A~~~gAdgv~~p~~~-~~~~~~~~~~~~~~i~-G~~t~~e~~~A~~~G 125 (187)
T PRK07455 77 -LEEAIAAGAQFCFTPHVD-PELIEAAVAQDIPIIP-GALTPTEIVTAWQAG 125 (187)
T ss_pred -HHHHHHcCCCEEECCCCC-HHHHHHHHHcCCCEEc-CcCCHHHHHHHHHCC
No 290
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=38.65 E-value=85 Score=27.19 Aligned_cols=91 Identities=7% Similarity=-0.030 Sum_probs=59.3
Q ss_pred cccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCC------------CceeEEEccccChHHHHHHHHHHHH
Q 025657 83 AFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGP------------GIRFFQLYVTKHRNVDAQLVKRAER 150 (249)
Q Consensus 83 g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~------------~~~wfQlY~~~d~~~~~~li~rA~~ 150 (249)
|+--+.+++-=.++++.|++.|+..++-|.+..+.+.+.+..+ .+..++-|.-.+.+.+.+-++.+.+
T Consensus 46 GGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~ 125 (213)
T PRK10076 46 GGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVS 125 (213)
T ss_pred CchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3334556654469999999999999999988887655543322 1122333344566677777888889
Q ss_pred cCCcEEEEeecCCCCCCchhhhh
Q 025657 151 AGFKAIALTVDTPRLGRREADIK 173 (249)
Q Consensus 151 aG~~alvvTvD~p~~g~Re~d~r 173 (249)
.|..-.+-|+=.|..-.-+.+++
T Consensus 126 ~g~~v~iR~~vIPg~nd~~e~i~ 148 (213)
T PRK10076 126 EGVNVIPRLPLIPGFTLSRENMQ 148 (213)
T ss_pred CCCcEEEEEEEECCCCCCHHHHH
Confidence 99887776665555433444444
No 291
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=38.43 E-value=3.3e+02 Score=25.75 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=54.4
Q ss_pred CceeEEEcccc-ChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhh
Q 025657 126 GIRFFQLYVTK-HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLA 204 (249)
Q Consensus 126 ~~~wfQlY~~~-d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (249)
|-.-|++.+-. +.+...+.++.++++. .-+-+-||+.. ++-..+-..- ...+ .+ + -
T Consensus 184 Gf~~~KiKvG~~~~~~di~~v~avRea~-~~~~l~vDaN~-~w~~~~A~~~-----------~~~l-----~~-~----l 240 (395)
T cd03323 184 GFKSFKLKGGVLPGEEEIEAVKALAEAF-PGARLRLDPNG-AWSLETAIRL-----------AKEL-----EG-V----L 240 (395)
T ss_pred CCcEEEEecCCCCHHHHHHHHHHHHHhC-CCCcEEEeCCC-CcCHHHHHHH-----------HHhc-----Cc-C----C
Confidence 55667877633 3344456777777764 34677888743 2322111100 0000 00 0 0
Q ss_pred hHhhhhcCCCCCHHHHHHHHHhCCCCEEEEc--cCCHHHHHHHhhCC
Q 025657 205 SYVANQIDRSLNWKDVKWLQTITSLPILVKG--VLTAEDGSKLLSKE 249 (249)
Q Consensus 205 ~~~~~~~~~~~tW~dl~wlr~~~~lPivlKG--Il~~eDA~~A~~~~ 249 (249)
.++...+ . +++.+++||+.++.||.. | +.+.+|++.+++.|
T Consensus 241 ~~iEeP~--~-d~~~~~~L~~~~~~PIa~-dEs~~~~~~~~~~i~~~ 283 (395)
T cd03323 241 AYLEDPC--G-GREGMAEFRRATGLPLAT-NMIVTDFRQLGHAIQLN 283 (395)
T ss_pred CEEECCC--C-CHHHHHHHHHhcCCCEEc-CCcccCHHHHHHHHHcC
Confidence 0111112 1 788999999999999887 5 55778888877654
No 292
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=38.42 E-value=1.3e+02 Score=27.08 Aligned_cols=37 Identities=8% Similarity=0.165 Sum_probs=28.7
Q ss_pred EccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhh
Q 025657 132 LYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 171 (249)
Q Consensus 132 lY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d 171 (249)
||++.++. +++++|..+|+.++++..--.+.......
T Consensus 7 LfvP~~~~---~~~~ka~~~gaD~vilDLEDav~~~~k~~ 43 (288)
T TIGR01588 7 MFVPGNNP---AMISDAFIYGADSVMFDLEDAVSLAEKDS 43 (288)
T ss_pred eecCCCCH---HHHHhhhhcCCCEEEEecccCCCcchHHH
Confidence 89999886 56688899999999999987665443333
No 293
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=37.88 E-value=99 Score=30.30 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=29.1
Q ss_pred HHHHHHHHHhC-CCCEEEEccCCHHHHHHHhhCC
Q 025657 217 WKDVKWLQTIT-SLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 217 W~dl~wlr~~~-~lPivlKGIl~~eDA~~A~~~~ 249 (249)
++-+++||+.. +.+|+.=-|-|.|.|+.++++|
T Consensus 256 ~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aG 289 (479)
T PRK07807 256 LEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAG 289 (479)
T ss_pred HHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcC
Confidence 46789999988 5888888999999999999987
No 294
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=37.60 E-value=98 Score=30.16 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=23.5
Q ss_pred HHHHHHHH---hCCCCEEE-EccCCHHHHHHHhhCC
Q 025657 218 KDVKWLQT---ITSLPILV-KGVLTAEDGSKLLSKE 249 (249)
Q Consensus 218 ~dl~wlr~---~~~lPivl-KGIl~~eDA~~A~~~~ 249 (249)
+-+..+++ .++.|||. =||.++.|+.+|+..|
T Consensus 318 ~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~G 353 (486)
T PRK05567 318 TAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAG 353 (486)
T ss_pred HHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhC
Confidence 33444444 46788776 3899999999999887
No 295
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=37.52 E-value=34 Score=30.75 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=24.2
Q ss_pred cceeecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEEe
Q 025657 64 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL 109 (249)
Q Consensus 64 ~st~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~l 109 (249)
++|+++|.++..||++|. |.. .++|. .+.+.+.|..+++
T Consensus 2 L~~~~~Gl~l~nPi~~as-G~~----~~~~~--~~~~~~~G~Gavv 40 (295)
T PF01180_consen 2 LSTNFCGLTLKNPIGLAS-GLD----KNGEE--IKRLFDAGFGAVV 40 (295)
T ss_dssp G-EEETTEEESSSEEE-T-TSS----TSSHH--HHHHHHHSSSEEE
T ss_pred ccEEECCEEcCCCcEECC-cCC----CCchh--hhhhhcCCccEEE
Confidence 789999999999999975 332 33442 2344456655543
No 296
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=37.45 E-value=3.7e+02 Score=25.94 Aligned_cols=66 Identities=20% Similarity=0.123 Sum_probs=34.9
Q ss_pred hhH--HHHHHHHhcCCcEEe-cCCCCCCHHHHHhcCCCceeEEEccccChH--HHHHHHHHHHHcCCcEEEEee
Q 025657 92 GEC--ATARAASAAGTIMTL-SSWATSSVEEVSSTGPGIRFFQLYVTKHRN--VDAQLVKRAERAGFKAIALTV 160 (249)
Q Consensus 92 gE~--~~AraA~~~gi~~~l-ss~ss~sleeia~~~~~~~wfQlY~~~d~~--~~~~li~rA~~aG~~alvvTv 160 (249)
||+ .++++|+++|+..++ .+.....--.+.. ....+.+-...... -...+++-|++.|+.+|+-+.
T Consensus 11 geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~---aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg~ 81 (472)
T PRK07178 11 GEIAVRIVRACAEMGIRSVAIYSEADRHALHVKR---ADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPGY 81 (472)
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhh---CCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeCC
Confidence 554 899999999996553 3332221111111 11233331111111 123677778889999988654
No 297
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=36.68 E-value=1.7e+02 Score=27.15 Aligned_cols=85 Identities=12% Similarity=0.035 Sum_probs=50.2
Q ss_pred ccceeeccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHH-------hcCCCcee-EEEccccChHHHHHHH
Q 025657 74 SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS-------STGPGIRF-FQLYVTKHRNVDAQLV 145 (249)
Q Consensus 74 ~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia-------~~~~~~~w-fQlY~~~d~~~~~~li 145 (249)
..||+-+||+... . .-.+|.|..++|-.-+++.. ..+.|++. +...+.+| .-|-.+.+.....+.+
T Consensus 2 ~yPIiqgpM~~vs--~---~~~LaaAVS~AGgLG~la~~-~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l 75 (320)
T cd04743 2 RYPIVQGPMTRVS--D---VAEFAVAVAEGGGLPFIALA-LMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQL 75 (320)
T ss_pred CCCEECCCcCCCC--C---cHHHHHHHHhCCccccCCCC-CCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHH
Confidence 4799999987432 1 13577788888877666643 34556442 21122233 3332222333345677
Q ss_pred HHHHHcCCcEEEEeecCCC
Q 025657 146 KRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 146 ~rA~~aG~~alvvTvD~p~ 164 (249)
+-+.+.+.+.++++.-.|.
T Consensus 76 ~vi~e~~v~~V~~~~G~P~ 94 (320)
T cd04743 76 AVVRAIKPTFALIAGGRPD 94 (320)
T ss_pred HHHHhcCCcEEEEcCCChH
Confidence 8888899998888765543
No 298
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=36.63 E-value=3.1e+02 Score=24.49 Aligned_cols=140 Identities=18% Similarity=0.167 Sum_probs=79.3
Q ss_pred hHHHHHHHHhcCCcEEecCCCCCCHHHHHhc---CCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCch
Q 025657 93 ECATARAASAAGTIMTLSSWATSSVEEVSST---GPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRRE 169 (249)
Q Consensus 93 E~~~AraA~~~gi~~~lss~ss~sleeia~~---~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re 169 (249)
+-.+.+.+++..++.-+| .+-.|.|++... +-...-+=.-..+|++..++++ ++-| ..|+|.+|+-.. .
T Consensus 64 ~~~i~~i~~~~~~~vQvG-GGIRs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~---~~~g-~rivv~lD~r~g-~-- 135 (241)
T COG0106 64 LEAIKEILEATDVPVQVG-GGIRSLEDVEALLDAGVARVIIGTAAVKNPDLVKELC---EEYG-DRIVVALDARDG-K-- 135 (241)
T ss_pred HHHHHHHHHhCCCCEEee-CCcCCHHHHHHHHHCCCCEEEEecceecCHHHHHHHH---HHcC-CcEEEEEEccCC-c--
Confidence 458888999999999998 567788888653 2222222222347888777665 5678 999999997441 1
Q ss_pred hhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhh--hc---CCCCCHHHHHHHHHhCCCCEEEE-ccCCHHHHH
Q 025657 170 ADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVAN--QI---DRSLNWKDVKWLQTITSLPILVK-GVLTAEDGS 243 (249)
Q Consensus 170 ~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~tW~dl~wlr~~~~lPivlK-GIl~~eDA~ 243 (249)
..=+|...-..+++-.+.. .+.. .+...++-. .. -...+|+-++.|.+.+..|++.- ||-+.+|-+
T Consensus 136 -vav~GW~e~s~~~~~~l~~-~~~~------~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~~ipviaSGGv~s~~Di~ 207 (241)
T COG0106 136 -VAVSGWQEDSGVELEELAK-RLEE------VGLAHILYTDISRDGTLSGPNVDLVKELAEAVDIPVIASGGVSSLDDIK 207 (241)
T ss_pred -cccccccccccCCHHHHHH-HHHh------cCCCeEEEEecccccccCCCCHHHHHHHHHHhCcCEEEecCcCCHHHHH
Confidence 0111211110111100000 0000 000000000 00 12467888999999999999886 588889888
Q ss_pred HHhhC
Q 025657 244 KLLSK 248 (249)
Q Consensus 244 ~A~~~ 248 (249)
++.+.
T Consensus 208 ~l~~~ 212 (241)
T COG0106 208 ALKEL 212 (241)
T ss_pred HHHhc
Confidence 77654
No 299
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=36.32 E-value=2e+02 Score=26.67 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=26.0
Q ss_pred CHHHHHHHHHhCCCCEEEEc-cCC-HHHHHHHhhCC
Q 025657 216 NWKDVKWLQTITSLPILVKG-VLT-AEDGSKLLSKE 249 (249)
Q Consensus 216 tW~dl~wlr~~~~lPivlKG-Il~-~eDA~~A~~~~ 249 (249)
+|+.+++||+.++.||..=. +.+ ++|++.+++.|
T Consensus 228 d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~ 263 (368)
T cd03329 228 SISSYRWLAEKLDIPILGTEHSRGALESRADWVLAG 263 (368)
T ss_pred hHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhC
Confidence 57788999999999987654 345 88888876653
No 300
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=36.22 E-value=1.5e+02 Score=26.13 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=45.9
Q ss_pred ccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHh-cCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeec
Q 025657 86 KMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS-TGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVD 161 (249)
Q Consensus 86 ~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~-~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD 161 (249)
+.-.|.-=-++.|.|.+.|+.-+...........+.. +.+...|..++...|-+ +.++..++.|+..+..+..
T Consensus 26 ~V~~p~NlGAIiRta~AfGv~~V~~v~~~~~~~~~~~~s~Ga~~wv~i~~~~~~~---~~i~~lk~~g~~i~at~~~ 99 (229)
T PRK11081 26 QVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTMGSTAAGSNSWVQVKTHRTIG---DAVAHLKGQGMQILATHLS 99 (229)
T ss_pred CCCCcchHHHHHHHHHHhCCCeEEEecCCCccchhhhhcCCchheEEEEEeCCHH---HHHHHHHhCCCEEEEEeCC
Confidence 3334443448999999999976533222333444333 33456899887666543 5667777889987776643
No 301
>PRK12856 hypothetical protein; Provisional
Probab=35.79 E-value=43 Score=25.91 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHcCCcEEE-EeecCCC
Q 025657 138 RNVDAQLVKRAERAGFKAIA-LTVDTPR 164 (249)
Q Consensus 138 ~~~~~~li~rA~~aG~~alv-vTvD~p~ 164 (249)
++...+|.++|++.|+.|++ +.+|+..
T Consensus 59 ~~A~~rm~~~A~~lGAnAVvgvr~d~~~ 86 (103)
T PRK12856 59 DIAMDEMKELAKQKGANAIVGVDVDYEV 86 (103)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhH
Confidence 45667899999999999987 7777654
No 302
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=35.67 E-value=1.9e+02 Score=21.68 Aligned_cols=67 Identities=18% Similarity=0.133 Sum_probs=40.7
Q ss_pred HHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecC
Q 025657 96 TARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDT 162 (249)
Q Consensus 96 ~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~ 162 (249)
++......|.+...-+.............++..++=+-..++...+.++++.|++.|++.+++|-+.
T Consensus 31 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~ 97 (139)
T cd05013 31 LAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSA 97 (139)
T ss_pred HHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCC
Confidence 4444555666555443322222222223344556655555666777889999999999999998764
No 303
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=35.58 E-value=22 Score=31.89 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=36.1
Q ss_pred CChhhH-HHHHHHHhcCCcEE-ecC---CCCCCHHHHHhcCC--CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeec
Q 025657 89 HPEGEC-ATARAASAAGTIMT-LSS---WATSSVEEVSSTGP--GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVD 161 (249)
Q Consensus 89 h~~gE~-~~AraA~~~gi~~~-lss---~ss~sleeia~~~~--~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD 161 (249)
+++.+. .+|+.-.+.|...+ +=| +-.-|++++.++.. ..+- +.+|-=+....|..|+.+|+.|+.+.+.
T Consensus 65 ~~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~Pv----L~KDFIid~~QI~eA~~~GADaVLLI~~ 140 (254)
T PF00218_consen 65 REDFDPAEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPV----LRKDFIIDPYQIYEARAAGADAVLLIAA 140 (254)
T ss_dssp BSS-SHHHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-E----EEES---SHHHHHHHHHTT-SEEEEEGG
T ss_pred CccCCHHHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCc----ccccCCCCHHHHHHHHHcCCCEeehhHH
Confidence 344333 67777777775433 111 12236777764321 1111 2255555556778888889999888887
Q ss_pred C
Q 025657 162 T 162 (249)
Q Consensus 162 ~ 162 (249)
.
T Consensus 141 ~ 141 (254)
T PF00218_consen 141 I 141 (254)
T ss_dssp G
T ss_pred h
Confidence 4
No 304
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=35.43 E-value=48 Score=27.87 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 025657 138 RNVDAQLVKRAERAGFKAIALTVDTPRL 165 (249)
Q Consensus 138 ~~~~~~li~rA~~aG~~alvvTvD~p~~ 165 (249)
.+...+.+++|++.++++|+|.+|+|..
T Consensus 15 ~~~l~~~l~~A~~~~~~~i~l~inSPGG 42 (172)
T cd07015 15 YDQFDRYITIAEQDNAEAIIIELDTPGG 42 (172)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEECCCC
Confidence 3466788899999999999999999984
No 305
>PRK08999 hypothetical protein; Provisional
Probab=35.13 E-value=72 Score=28.70 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 213 RSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 213 ~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
+++.|+.++|+++..+.|++.=|=.+++++..+.++|
T Consensus 265 ~~~g~~~~~~~~~~~~~Pv~AiGGI~~~~~~~~~~~g 301 (312)
T PRK08999 265 APLGWEGFAALIAGVPLPVYALGGLGPGDLEEAREHG 301 (312)
T ss_pred CCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHhC
Confidence 5688999999999999999998755999999988876
No 306
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=35.08 E-value=1.5e+02 Score=27.73 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHcCCcE
Q 025657 139 NVDAQLVKRAERAGFKA 155 (249)
Q Consensus 139 ~~~~~li~rA~~aG~~a 155 (249)
+...++++++.++|+..
T Consensus 141 ~~l~~~~~~~~~~g~~~ 157 (363)
T TIGR02090 141 DFLIKVFKRAEEAGADR 157 (363)
T ss_pred HHHHHHHHHHHhCCCCE
Confidence 34444444444444443
No 307
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=34.74 E-value=55 Score=27.55 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 025657 138 RNVDAQLVKRAERAGFKAIALTVDTPRL 165 (249)
Q Consensus 138 ~~~~~~li~rA~~aG~~alvvTvD~p~~ 165 (249)
.+...+.+++|++.++++|+|.+|+|..
T Consensus 15 ~~~l~~~l~~a~~~~~~~ivl~inspGG 42 (178)
T cd07021 15 AAFVERALKEAKEEGADAVVLDIDTPGG 42 (178)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEECcCC
Confidence 3456677899999999999999999984
No 308
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=34.64 E-value=2.8e+02 Score=24.64 Aligned_cols=87 Identities=14% Similarity=0.074 Sum_probs=60.1
Q ss_pred cCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHH---HhcCC---------CceeEEEccccChHHHHHHHHHHHHcCCc
Q 025657 87 MAHPEGECATARAASAAGTIMTLSSWATSSVEEV---SSTGP---------GIRFFQLYVTKHRNVDAQLVKRAERAGFK 154 (249)
Q Consensus 87 l~h~~gE~~~AraA~~~gi~~~lss~ss~sleei---a~~~~---------~~~wfQlY~~~d~~~~~~li~rA~~aG~~ 154 (249)
+.+++.-..++++|++.|+..++-|.+..+-+.+ .+... ....++-+...+.+.+.+-++.+.+.|..
T Consensus 95 ~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~~~~~l~~~~D~v~~DlK~~~~~~y~~~tg~~~~~vl~~~~~l~~~g~~ 174 (260)
T COG1180 95 TLQAEFALDLLRAAKERGLHVALDTNGFLPPEALEELLPLLDAVLLDLKAFDDELYRKLTGADNEPVLENLELLADLGVH 174 (260)
T ss_pred hhhHHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHhhcCeEEEeeccCChHHHHHHhCCCcHHHHHHHHHHHcCCCe
Confidence 4456666799999999999999999988875544 32211 11224444444557777888888888888
Q ss_pred EEEEeecCCCCCCchhhhh
Q 025657 155 AIALTVDTPRLGRREADIK 173 (249)
Q Consensus 155 alvvTvD~p~~g~Re~d~r 173 (249)
.-+-|+=.|.....+.+++
T Consensus 175 ve~r~lviPg~~d~~e~i~ 193 (260)
T COG1180 175 VEIRTLVIPGYNDDEEEIR 193 (260)
T ss_pred EEEEEEEECCCCCCHHHHH
Confidence 7777777666655666665
No 309
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=34.58 E-value=1.4e+02 Score=26.29 Aligned_cols=93 Identities=18% Similarity=0.167 Sum_probs=56.0
Q ss_pred eeecCcccccceeeccccccccCCChhhH-HHHHHHHhcCCcEEecCCCCCC------HHHHHhcCCCceeEEEccccCh
Q 025657 66 TTVLGFNISMPIMIAPTAFQKMAHPEGEC-ATARAASAAGTIMTLSSWATSS------VEEVSSTGPGIRFFQLYVTKHR 138 (249)
Q Consensus 66 t~llG~~~~~Pi~iaP~g~~~l~h~~gE~-~~AraA~~~gi~~~lss~ss~s------leeia~~~~~~~wfQlY~~~d~ 138 (249)
+.+.+.-+..|++...+.+. .+-|. .++++-...++-.++ +.+-.| +|-|+...+-... -+-|.+|+
T Consensus 51 ~~~~Ae~~gi~l~~~~~~g~----~e~eve~L~~~l~~l~~d~iv-~GaI~s~yqk~rve~lc~~lGl~~~-~PLWg~d~ 124 (223)
T COG2102 51 AELQAEAMGIPLVTFDTSGE----EEREVEELKEALRRLKVDGIV-AGAIASEYQKERVERLCEELGLKVY-APLWGRDP 124 (223)
T ss_pred HHHHHHhcCCceEEEecCcc----chhhHHHHHHHHHhCcccEEE-EchhhhHHHHHHHHHHHHHhCCEEe-ecccCCCH
Confidence 34566667777777776652 23344 677777777744443 344443 5666654331122 22244565
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecCCCCCC
Q 025657 139 NVDAQLVKRAERAGFKAIALTVDTPRLGR 167 (249)
Q Consensus 139 ~~~~~li~rA~~aG~~alvvTvD~p~~g~ 167 (249)
+ ++++.--.+|+++++|.|++..++.
T Consensus 125 ~---ell~e~~~~Gf~~~Iv~Vsa~gL~~ 150 (223)
T COG2102 125 E---ELLEEMVEAGFEAIIVAVSAEGLDE 150 (223)
T ss_pred H---HHHHHHHHcCCeEEEEEEeccCCCh
Confidence 4 4455556899999999999988654
No 310
>PRK01119 hypothetical protein; Provisional
Probab=34.45 E-value=47 Score=25.82 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHcCCcEEE-EeecCCCC
Q 025657 138 RNVDAQLVKRAERAGFKAIA-LTVDTPRL 165 (249)
Q Consensus 138 ~~~~~~li~rA~~aG~~alv-vTvD~p~~ 165 (249)
++...+|.++|++.|++||+ +.+|+...
T Consensus 59 ~~A~~rm~~~A~~lGAnAVIgvr~d~~~i 87 (106)
T PRK01119 59 EEAIREMEQRAKDIGANAVIGVDIDYEVL 87 (106)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEeeee
Confidence 35667999999999999988 77887554
No 311
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=34.11 E-value=1.9e+02 Score=26.81 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhC
Q 025657 214 SLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSK 248 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~ 248 (249)
.-+|+.+++||+.++.||.+== +.+++|.+..++.
T Consensus 224 ~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~ 259 (368)
T TIGR02534 224 AENREALARLTRRFNVPIMADESVTGPADALAIAKA 259 (368)
T ss_pred cccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHh
Confidence 3468889999999999998721 5678888877664
No 312
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=33.89 E-value=79 Score=27.37 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
..++-++.+++..+.||++= ||-+.||++.+.+.|
T Consensus 58 ~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G 93 (243)
T cd04731 58 TMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAG 93 (243)
T ss_pred ccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 46788999999999998875 689999999988765
No 313
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=33.45 E-value=69 Score=26.43 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeecC
Q 025657 138 RNVDAQLVKRAERAGFKAIALTVDT 162 (249)
Q Consensus 138 ~~~~~~li~rA~~aG~~alvvTvD~ 162 (249)
.-.+.+++++|.++|.+..+.||+.
T Consensus 135 ~~~~~~~v~~~~~~g~~v~~wtvn~ 159 (179)
T cd08555 135 LIKDTELIASANKLGLLSRIWTVND 159 (179)
T ss_pred hhcCHHHHHHHHHCCCEEEEEeeCC
Confidence 3356789999999999999999997
No 314
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=33.23 E-value=57 Score=29.22 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHc-CCcEEEEeecCCC
Q 025657 139 NVDAQLVKRAERA-GFKAIALTVDTPR 164 (249)
Q Consensus 139 ~~~~~li~rA~~a-G~~alvvTvD~p~ 164 (249)
-.+.+++++|.++ |.+..+.|||.+.
T Consensus 216 l~t~~~V~~~h~~~gl~V~~WTVN~~~ 242 (263)
T cd08580 216 LWTPAAVDCFRRNSKVKIVLFGINTAD 242 (263)
T ss_pred cCCHHHHHHHHhcCCcEEEEEEeCCHH
Confidence 3457899999999 9999999998754
No 315
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=33.07 E-value=3.6e+02 Score=25.35 Aligned_cols=89 Identities=16% Similarity=0.140 Sum_probs=50.6
Q ss_pred ccceeecccccc-ccCCChhhHHHHHHHHhcCCcEE-----ecCCCCCCHHHHHh--------cC---CCceeEEEcccc
Q 025657 74 SMPIMIAPTAFQ-KMAHPEGECATARAASAAGTIMT-----LSSWATSSVEEVSS--------TG---PGIRFFQLYVTK 136 (249)
Q Consensus 74 ~~Pi~iaP~g~~-~l~h~~gE~~~AraA~~~gi~~~-----lss~ss~sleeia~--------~~---~~~~wfQlY~~~ 136 (249)
.-|++.+|+--. ++ .++.=..+++...+.|+-.+ ++.+..+|.||=.+ +. .....+-.=...
T Consensus 129 ~rPli~Ti~kp~~gl-d~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~ 207 (367)
T cd08205 129 DRPLLGTIIKPSIGL-SPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITG 207 (367)
T ss_pred CCCeeeeeeCCCCCC-CHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCC
Confidence 577777764422 22 33333366777777786664 44455566664321 11 233333333334
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecCC
Q 025657 137 HRNVDAQLVKRAERAGFKAIALTVDTP 163 (249)
Q Consensus 137 d~~~~~~li~rA~~aG~~alvvTvD~p 163 (249)
+.+.+.++.+.|+++|+.+++|..=.-
T Consensus 208 ~~~e~i~~a~~a~~~Gad~vmv~~~~~ 234 (367)
T cd08205 208 DPDELRRRADRAVEAGANALLINPNLV 234 (367)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 556666777778889999987766543
No 316
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=33.02 E-value=2.3e+02 Score=25.14 Aligned_cols=78 Identities=13% Similarity=0.118 Sum_probs=47.0
Q ss_pred ccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCCCcee--EEEcccc----------ChHHHHHHHHHHH
Q 025657 82 TAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRF--FQLYVTK----------HRNVDAQLVKRAE 149 (249)
Q Consensus 82 ~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~~~~w--fQlY~~~----------d~~~~~~li~rA~ 149 (249)
+|+--+.|++--..+++.+++.|+...+.|.+..+-+.+.+..+..-+ +++--.. +.+.+.+-|+.+.
T Consensus 132 sGGEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~~~~~~~ll~~~d~~~isl~~~~~~~~~~~~g~~~~~vl~~i~~l~ 211 (295)
T TIGR02494 132 SGGEPLLQPEFALALLQACHERGIHTAVETSGFTPWETIEKVLPYVDLFLFDIKHLDDERHKEVTGVDNEPILENLEALA 211 (295)
T ss_pred eCcchhchHHHHHHHHHHHHHcCCcEeeeCCCCCCHHHHHHHHhhCCEEEEeeccCChHHHHHHhCCChHHHHHHHHHHH
Confidence 344446677554578889999999999988887765555543332223 3332221 2234455567777
Q ss_pred HcCCcEEEEe
Q 025657 150 RAGFKAIALT 159 (249)
Q Consensus 150 ~aG~~alvvT 159 (249)
+.|.+..+-+
T Consensus 212 ~~~~~~~i~~ 221 (295)
T TIGR02494 212 AAGKNVVIRI 221 (295)
T ss_pred hCCCcEEEEe
Confidence 7787655444
No 317
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=33.00 E-value=30 Score=31.15 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=18.6
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEe
Q 025657 137 HRNVDAQLVKRAERAGFKAIALT 159 (249)
Q Consensus 137 d~~~~~~li~rA~~aG~~alvvT 159 (249)
+++..++|+++|++.|..+||=+
T Consensus 141 ~~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 141 DDEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred CHHHHHHHHHHHHHcCCeeEEEE
Confidence 56677899999999999988733
No 318
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=32.41 E-value=60 Score=29.05 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=26.3
Q ss_pred HHHHHHHHhCCCCEEEE-ccCCHHHHHHHhh
Q 025657 218 KDVKWLQTITSLPILVK-GVLTAEDGSKLLS 247 (249)
Q Consensus 218 ~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~ 247 (249)
+.++.+|+.++.|+++= ||.++||+..+.+
T Consensus 190 ~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~ 220 (258)
T PRK13111 190 ELVARLKAHTDLPVAVGFGISTPEQAAAIAA 220 (258)
T ss_pred HHHHHHHhcCCCcEEEEcccCCHHHHHHHHH
Confidence 57999999999999984 6889999998875
No 319
>PLN02735 carbamoyl-phosphate synthase
Probab=32.03 E-value=3.4e+02 Score=29.58 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=38.3
Q ss_pred HHHHHHHhcCCcEEecCCCCCCHHHHHhcC--CCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecC
Q 025657 95 ATARAASAAGTIMTLSSWATSSVEEVSSTG--PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDT 162 (249)
Q Consensus 95 ~~AraA~~~gi~~~lss~ss~sleeia~~~--~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~ 162 (249)
..++++++.|+-.++-+. ..|.++-.. .+..+| .|.. .+++++-|++.+..+|+++++.
T Consensus 599 ~~~~alr~~G~~tI~v~~---npetvstd~~~aD~~y~-~pl~-----~e~vl~i~~~e~~d~Vi~~~Gg 659 (1102)
T PLN02735 599 HASFALQDAGYETIMMNS---NPETVSTDYDTSDRLYF-EPLT-----VEDVLNVIDLERPDGIIVQFGG 659 (1102)
T ss_pred HHHHHHHHcCCeEEEEeC---CCccccCCcccCCeEEE-EeCC-----HHHHHHHHHHhCCCEEEECCCc
Confidence 688999999997765433 233333111 122333 3332 6688888999999999987774
No 320
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=31.77 E-value=15 Score=31.08 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 213 RSLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 213 ~~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
|.+--+-++++++.++.|++-=| |.+.||+..|+++|
T Consensus 125 Pg~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aG 162 (175)
T PF04309_consen 125 PGVMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAG 162 (175)
T ss_dssp SCCHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTT
T ss_pred hHHHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcC
Confidence 34444668889999999999999 67899999999987
No 321
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=31.70 E-value=4.5e+02 Score=24.85 Aligned_cols=67 Identities=16% Similarity=0.091 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCcEEecCCCC------CC-------HHHHHhcCC-CceeEEEccccChHHHHHHHHHHHHcCCcEEEEe
Q 025657 94 CATARAASAAGTIMTLSSWAT------SS-------VEEVSSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALT 159 (249)
Q Consensus 94 ~~~AraA~~~gi~~~lss~ss------~s-------leeia~~~~-~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvT 159 (249)
.-..+.|...+++....-.+. .+ +++|.+..+ -+.++++-...+.+ ++.+.++..|+++| +
T Consensus 169 Kv~~eiA~~r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~---~~a~~~~~~g~D~I--~ 243 (392)
T cd02808 169 KVTEEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEG---DIAAGVAAAGADFI--T 243 (392)
T ss_pred cCCHHHHHHhCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHH---HHHHHHHHcCCCEE--E
Confidence 345566666677554444332 23 445555555 56778886554333 55555566778876 5
Q ss_pred ecCCCC
Q 025657 160 VDTPRL 165 (249)
Q Consensus 160 vD~p~~ 165 (249)
||....
T Consensus 244 VsG~~G 249 (392)
T cd02808 244 IDGAEG 249 (392)
T ss_pred EeCCCC
Confidence 776543
No 322
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=31.69 E-value=71 Score=30.04 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=29.0
Q ss_pred CHHHHHHHHHhCCCCEEEEcc-------------------CCHHHHHHHhhCC
Q 025657 216 NWKDVKWLQTITSLPILVKGV-------------------LTAEDGSKLLSKE 249 (249)
Q Consensus 216 tW~dl~wlr~~~~lPivlKGI-------------------l~~eDA~~A~~~~ 249 (249)
.|+-.+++|+.++.||++=|= .++++|+.+++.|
T Consensus 268 ~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g 320 (361)
T cd04747 268 ELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERG 320 (361)
T ss_pred chhHHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCC
Confidence 567778999999999999884 4999999999865
No 323
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=31.37 E-value=2.2e+02 Score=24.97 Aligned_cols=70 Identities=21% Similarity=0.221 Sum_probs=43.0
Q ss_pred hhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcC-CCceeEEEccccChH---------------HHHHHHHHHHHcCCcE
Q 025657 92 GECATARAASAAGTIMTLSSWATSSVEEVSSTG-PGIRFFQLYVTKHRN---------------VDAQLVKRAERAGFKA 155 (249)
Q Consensus 92 gE~~~AraA~~~gi~~~lss~ss~sleeia~~~-~~~~wfQlY~~~d~~---------------~~~~li~rA~~aG~~a 155 (249)
.|....+...+.+....+........++|..+. .+..++.++...+.. ...+.++.|++.|+..
T Consensus 47 ~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v 126 (259)
T cd07939 47 EEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFV 126 (259)
T ss_pred HHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 344455555554444555555556778886432 256788888765443 3457888999999865
Q ss_pred EEEeec
Q 025657 156 IALTVD 161 (249)
Q Consensus 156 lvvTvD 161 (249)
-+-..|
T Consensus 127 ~~~~~~ 132 (259)
T cd07939 127 SVGAED 132 (259)
T ss_pred EEeecc
Confidence 444444
No 324
>PF02007 MtrH: Tetrahydromethanopterin S-methyltransferase MtrH subunit; InterPro: IPR023467 In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H. The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide []. Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity []. CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon metabolic process
Probab=31.34 E-value=2.8e+02 Score=25.60 Aligned_cols=119 Identities=18% Similarity=0.175 Sum_probs=68.2
Q ss_pred HHHHHHHhhcccceeccccCCCCC----CccceeecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcE---Eec
Q 025657 38 TLQENRNAFSRILFRPRILRDVSK----IDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIM---TLS 110 (249)
Q Consensus 38 t~~~N~~af~~~~l~pr~l~~v~~----~d~st~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~---~ls 110 (249)
.|-++.+-+++..=.|.++.=+.+ ...=..++..-...||+|-.+. ++.-.+.++-+.+.|+.= -=|
T Consensus 51 ~Li~~q~elsd~TGnp~~~~I~~~s~EA~~kYidFv~~i~d~PfliDS~~------~~~R~~a~~yv~E~Gl~dR~IYNS 124 (296)
T PF02007_consen 51 ALINRQEELSDETGNPCIVDIVAESPEAMEKYIDFVAEITDSPFLIDSSS------PEVRIAAAKYVTEIGLADRAIYNS 124 (296)
T ss_pred HHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHhhcCCCCeEecCCC------HHHHHHHHHHHhhhchhhhhhhhc
Confidence 344555556666656666553321 1122456777788999996522 344456777777777642 112
Q ss_pred CCCCCCHHHHHhc---CCCceeEEEccccChHH--------------HHHHHHHHHHcCCcEEEEeecC
Q 025657 111 SWATSSVEEVSST---GPGIRFFQLYVTKHRNV--------------DAQLVKRAERAGFKAIALTVDT 162 (249)
Q Consensus 111 s~ss~sleeia~~---~~~~~wfQlY~~~d~~~--------------~~~li~rA~~aG~~alvvTvD~ 162 (249)
-..+..-||+.+. .......+-|-+.|... -+-||+-|+++|.+..+|.+=.
T Consensus 125 In~~~~~~EieaLkes~i~aaIvLaFn~~d~s~~gr~~~le~~~~~~~kgll~~a~e~GI~~~LvD~~v 193 (296)
T PF02007_consen 125 INMSIEDEEIEALKESDIDAAIVLAFNPMDPSVEGRIEMLENGGGGQDKGLLDIAEECGIENPLVDTAV 193 (296)
T ss_pred CCCCCCHHHHHHHHhcCCCEEEEEecCCCCCChhhhHHHHhccCcccccchHHHHHHcCCcceeecccc
Confidence 2333444566432 22344566665555432 1346788999999999876543
No 325
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=31.32 E-value=67 Score=21.82 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=23.0
Q ss_pred CceeEEEccccChHHHHHHHHHHHHcCCcEEE
Q 025657 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIA 157 (249)
Q Consensus 126 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~alv 157 (249)
...++|+...++++...+++++.+..|+.+.+
T Consensus 3 ~~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~ 34 (76)
T PF05036_consen 3 SGYYVQVGSFSSEENAERLLAKLKKKGPDAYV 34 (76)
T ss_dssp -EEEEEEEEES-HHHHHHHHHHHHHHT-----
T ss_pred CcEEEEEEEcCCHHHHHHHHHHHHhcCCCcce
Confidence 34679999999999999999999999998875
No 326
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=31.30 E-value=79 Score=32.70 Aligned_cols=37 Identities=8% Similarity=0.188 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHhCC---CCEEEEccCCHHHHHHHhhCC
Q 025657 213 RSLNWKDVKWLQTITS---LPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 213 ~~~tW~dl~wlr~~~~---lPivlKGIl~~eDA~~A~~~~ 249 (249)
+.+.|+.++|+++..+ .|++.=|=.+++++..+.++|
T Consensus 148 ~~lG~~~l~~~~~~~~~~~iPv~AiGGI~~~~~~~~~~~G 187 (755)
T PRK09517 148 PALGVDGIAEIAAVAQDHGIASVAIGGVGLRNAAELAATG 187 (755)
T ss_pred CCCCHHHHHHHHHhcCcCCCCEEEECCCCHHHHHHHHHcC
Confidence 4689999999999988 999999988999999998876
No 327
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=31.29 E-value=3.6e+02 Score=24.08 Aligned_cols=83 Identities=19% Similarity=0.115 Sum_probs=41.6
Q ss_pred ceeeccccccccCCChhhHHHHHHHHhc-CCcE--EecCCC---CCCHHHHH-------hcCCC--ceeEEEccccChHH
Q 025657 76 PIMIAPTAFQKMAHPEGECATARAASAA-GTIM--TLSSWA---TSSVEEVS-------STGPG--IRFFQLYVTKHRNV 140 (249)
Q Consensus 76 Pi~iaP~g~~~l~h~~gE~~~AraA~~~-gi~~--~lss~s---s~sleeia-------~~~~~--~~wfQlY~~~d~~~ 140 (249)
|..+.|+.-.+-++.++=..+.+-..+. |+-- +.||.+ +.|.||=. ++..+ +...++-- .+-+.
T Consensus 6 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~-~~~~~ 84 (288)
T cd00954 6 AALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGS-LNLKE 84 (288)
T ss_pred eceECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCC-CCHHH
Confidence 4455565444434444444555555555 5433 333322 33444321 12222 33455421 24455
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 025657 141 DAQLVKRAERAGFKAIALT 159 (249)
Q Consensus 141 ~~~li~rA~~aG~~alvvT 159 (249)
+.++.+.|+++|+.++++.
T Consensus 85 ai~~a~~a~~~Gad~v~~~ 103 (288)
T cd00954 85 SQELAKHAEELGYDAISAI 103 (288)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 6677778888888888765
No 328
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=31.18 E-value=1.6e+02 Score=27.32 Aligned_cols=57 Identities=11% Similarity=0.095 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCcEEecCCCCCC-HHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEe
Q 025657 95 ATARAASAAGTIMTLSSWATSS-VEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALT 159 (249)
Q Consensus 95 ~~AraA~~~gi~~~lss~ss~s-leeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvT 159 (249)
...+.+.+.++++++.+.+... ++.+.+ .+-..|.++ .+. ++.++++++|+++||+.
T Consensus 73 ~~l~vi~e~~v~~V~~~~G~P~~~~~lk~-~Gi~v~~~v---~s~----~~A~~a~~~GaD~vVaq 130 (320)
T cd04743 73 AQLAVVRAIKPTFALIAGGRPDQARALEA-IGISTYLHV---PSP----GLLKQFLENGARKFIFE 130 (320)
T ss_pred HHHHHHHhcCCcEEEEcCCChHHHHHHHH-CCCEEEEEe---CCH----HHHHHHHHcCCCEEEEe
Confidence 4677778889999887765432 333332 233345555 222 44578899999999864
No 329
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=31.16 E-value=94 Score=27.27 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=20.2
Q ss_pred cChHHHHHHHHHHHHcCCcEEEEee
Q 025657 136 KHRNVDAQLVKRAERAGFKAIALTV 160 (249)
Q Consensus 136 ~d~~~~~~li~rA~~aG~~alvvTv 160 (249)
.|.+.+.+.+++.+++|+..|=+.+
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i 35 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI 35 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC
Confidence 4667788999999999999986553
No 330
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=30.70 E-value=87 Score=30.52 Aligned_cols=37 Identities=11% Similarity=0.365 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 213 RSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 213 ~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
+++.|+.++|+++..+.|++.=|=.+++++..++++|
T Consensus 429 ~~~g~~~~~~~~~~~~~Pv~aiGGI~~~~~~~~~~~G 465 (502)
T PLN02898 429 KTIGLDGLREVCEASKLPVVAIGGISASNAASVMESG 465 (502)
T ss_pred CCCCHHHHHHHHHcCCCCEEEECCCCHHHHHHHHHcC
Confidence 4678999999999999999999988999999988876
No 331
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=30.69 E-value=75 Score=27.66 Aligned_cols=35 Identities=3% Similarity=0.177 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHhCC-----CCEEEEccCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTITS-----LPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~~-----lPivlKGIl~~eDA~~A~~~~ 249 (249)
.+.+.|+.+|+..+ .||.+=|=.+++.+..++++|
T Consensus 149 ~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aG 188 (220)
T PRK08883 149 HTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAG 188 (220)
T ss_pred hHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcC
Confidence 45678888887753 789788877799999998887
No 332
>PRK14017 galactonate dehydratase; Provisional
Probab=30.65 E-value=3.1e+02 Score=25.58 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
.-+|+.+++|+++++.||.+= -+.+.+|++..+++|
T Consensus 214 ~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~ 250 (382)
T PRK14017 214 PENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAG 250 (382)
T ss_pred cCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcC
Confidence 346888999999999998762 356888888877654
No 333
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=30.61 E-value=3.7e+02 Score=24.05 Aligned_cols=85 Identities=18% Similarity=0.089 Sum_probs=53.2
Q ss_pred cceeeccccccccCCChhhHHHHHHHHh-cCCc--EEecCCC---CCCHHHHH-------hcCC--CceeEEEccccChH
Q 025657 75 MPIMIAPTAFQKMAHPEGECATARAASA-AGTI--MTLSSWA---TSSVEEVS-------STGP--GIRFFQLYVTKHRN 139 (249)
Q Consensus 75 ~Pi~iaP~g~~~l~h~~gE~~~AraA~~-~gi~--~~lss~s---s~sleeia-------~~~~--~~~wfQlY~~~d~~ 139 (249)
.|.++.|+.-.+-++.++=..+.+-.-+ .|+- ++.||.+ +.|.||-. +..+ -+...++-- .+-+
T Consensus 8 ~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~-~~t~ 86 (293)
T PRK04147 8 YAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS-VNTA 86 (293)
T ss_pred eeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC-CCHH
Confidence 4666777665555566665677777777 7764 3445433 44555432 2222 245666632 3456
Q ss_pred HHHHHHHHHHHcCCcEEEEee
Q 025657 140 VDAQLVKRAERAGFKAIALTV 160 (249)
Q Consensus 140 ~~~~li~rA~~aG~~alvvTv 160 (249)
.+.++.+.|+++|+.++++.-
T Consensus 87 ~ai~~a~~a~~~Gad~v~v~~ 107 (293)
T PRK04147 87 EAQELAKYATELGYDAISAVT 107 (293)
T ss_pred HHHHHHHHHHHcCCCEEEEeC
Confidence 677889999999999999874
No 334
>COG3147 DedD Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.61 E-value=54 Score=28.82 Aligned_cols=40 Identities=30% Similarity=0.384 Sum_probs=34.2
Q ss_pred cee-EEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCC
Q 025657 127 IRF-FQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGR 167 (249)
Q Consensus 127 ~~w-fQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~ 167 (249)
..| .||=-.++.+...+|+.+.+.+||.+.+--. +|+.|.
T Consensus 150 ~a~~VQLgAl~n~dranel~~~Lr~~G~~ayi~~~-~p~qg~ 190 (226)
T COG3147 150 QAFVVQLGALKNADRANELVAKLRGAGYRAYIEPS-TPVQGD 190 (226)
T ss_pred cceeehhhhhhhHHHHHHHHHHHHhCCCceeeccc-CCCCCc
Confidence 456 8999999999999999999999999988777 666543
No 335
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=30.58 E-value=81 Score=26.39 Aligned_cols=32 Identities=25% Similarity=0.201 Sum_probs=26.4
Q ss_pred HHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 218 KDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 218 ~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
+.+..+.+..+.++|+.||-+.++...+.+.|
T Consensus 193 ~~l~~~~~~~~~~via~gVe~~~~~~~l~~~G 224 (241)
T smart00052 193 QSIIELAQKLGLQVVAEGVETPEQLDLLRSLG 224 (241)
T ss_pred HHHHHHHHHCCCeEEEecCCCHHHHHHHHHcC
Confidence 34455666789999999999999999998876
No 336
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=30.46 E-value=66 Score=28.24 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=28.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecCCCCCCch
Q 025657 137 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRRE 169 (249)
Q Consensus 137 d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re 169 (249)
..+++.+|.+.|+++|+++|++..-.|..|-|+
T Consensus 61 HPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~ 93 (217)
T PF02593_consen 61 HPDLTYELPEIAKEAGVKAVIVPSESPKPGLRR 93 (217)
T ss_pred CchhHHHHHHHHHHcCCCEEEEecCCCccchHH
Confidence 778999999999999999999999988855554
No 337
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=30.40 E-value=61 Score=29.01 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=27.7
Q ss_pred CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 025657 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRL 165 (249)
Q Consensus 126 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~ 165 (249)
+..-||+|+ ++.+....+++.|.+|||.. .|-||-|..
T Consensus 154 ~raV~QfYp-en~~q~d~i~~~a~~aGF~G-GlvVd~Pes 191 (270)
T KOG1541|consen 154 ARAVLQFYP-ENEAQIDMIMQQAMKAGFGG-GLVVDWPES 191 (270)
T ss_pred ceeEEEecc-cchHHHHHHHHHHHhhccCC-ceeeecccc
Confidence 345699996 56666678889999999876 345787753
No 338
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=30.35 E-value=3.6e+02 Score=24.87 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
.-+|+.+++|+++++.||.+== +.+++|...+++.|
T Consensus 213 ~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~ 249 (352)
T cd03325 213 PENVEALAEIAARTTIPIATGERLFSRWDFKELLEDG 249 (352)
T ss_pred ccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhC
Confidence 3478899999999999988732 56888888776643
No 339
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=29.94 E-value=4e+02 Score=23.72 Aligned_cols=80 Identities=18% Similarity=0.086 Sum_probs=45.3
Q ss_pred eeccccccccCCChhhHHHHHHHHhcCCcE--EecCCC---CCCHHHHH-------hcCCCceeEEEccccChHHHHHHH
Q 025657 78 MIAPTAFQKMAHPEGECATARAASAAGTIM--TLSSWA---TSSVEEVS-------STGPGIRFFQLYVTKHRNVDAQLV 145 (249)
Q Consensus 78 ~iaP~g~~~l~h~~gE~~~AraA~~~gi~~--~lss~s---s~sleeia-------~~~~~~~wfQlY~~~d~~~~~~li 145 (249)
++.|+-- +-++.++=..+++-..+.|+-- +.||.+ +.|.||-. +.. +...+++- ..+-+.+.++.
T Consensus 8 ~~TPf~~-g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~-~~vi~gvg-~~~~~~ai~~a 84 (279)
T cd00953 8 VITPFTG-NKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT-DKVIFQVG-SLNLEESIELA 84 (279)
T ss_pred eecCcCC-CCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc-CCEEEEeC-cCCHHHHHHHH
Confidence 3456543 3334444446666666667543 344433 34555432 222 33455553 23456677888
Q ss_pred HHHHHcCCcEEEEee
Q 025657 146 KRAERAGFKAIALTV 160 (249)
Q Consensus 146 ~rA~~aG~~alvvTv 160 (249)
+.|+++|+.+++++.
T Consensus 85 ~~a~~~Gad~v~v~~ 99 (279)
T cd00953 85 RAAKSFGIYAIASLP 99 (279)
T ss_pred HHHHHcCCCEEEEeC
Confidence 889999999998875
No 340
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=29.71 E-value=69 Score=30.78 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=25.5
Q ss_pred HHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 219 DVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 219 dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
++..+.+.++.|||.=| |.+++|+.+|+..|
T Consensus 247 ~v~~~~~~~~vpVIAdGGI~~~~Di~KALalG 278 (404)
T PRK06843 247 DVYEVCKNTNICIIADGGIRFSGDVVKAIAAG 278 (404)
T ss_pred HHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcC
Confidence 34455556789999998 99999999999887
No 341
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=29.47 E-value=1.7e+02 Score=26.49 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=19.7
Q ss_pred HHHHHHHHcCCcEEEEeecCCC
Q 025657 143 QLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 143 ~li~rA~~aG~~alvvTvD~p~ 164 (249)
+++++|+++|.+..+-||+.+.
T Consensus 241 ~~v~~a~~~Gl~v~vwTvn~~~ 262 (300)
T cd08604 241 NVVEKLQSANLTVYVEVLRNEF 262 (300)
T ss_pred HHHHHHHHCCCEEEEEEecCCc
Confidence 7899999999999999998653
No 342
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=29.08 E-value=1.1e+02 Score=28.67 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=40.2
Q ss_pred cCCChhhH-HHHHHHHhcCCcEEecCCC-----CCCHHHHH---hc-CCCce--------eEEEcccc------------
Q 025657 87 MAHPEGEC-ATARAASAAGTIMTLSSWA-----TSSVEEVS---ST-GPGIR--------FFQLYVTK------------ 136 (249)
Q Consensus 87 l~h~~gE~-~~AraA~~~gi~~~lss~s-----s~sleeia---~~-~~~~~--------wfQlY~~~------------ 136 (249)
...++-+. .+|++-.+.|.. ++|-.. .-|+|++. ++ ..-|. =+|+|-.+
T Consensus 134 ~I~~~~dp~~iA~~Ye~~GA~-aISVLTd~~~F~Gs~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaa 212 (338)
T PLN02460 134 VLRENFDPVEIAQAYEKGGAA-CLSVLTDEKYFQGSFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAA 212 (338)
T ss_pred ccCCCCCHHHHHHHHHhCCCc-EEEEecCcCcCCCCHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHH
Confidence 33444443 778887777764 333322 23566664 33 21111 25666543
Q ss_pred --ChHHHHHHHHHHHHcCCcEEE
Q 025657 137 --HRNVDAQLVKRAERAGFKAIA 157 (249)
Q Consensus 137 --d~~~~~~li~rA~~aG~~alv 157 (249)
+.+...+|++.|+..|-.+||
T Consensus 213 iL~~~~L~~l~~~A~~LGme~LV 235 (338)
T PLN02460 213 VLPDLDIKYMLKICKSLGMAALI 235 (338)
T ss_pred hCCHHHHHHHHHHHHHcCCeEEE
Confidence 455677888888888888876
No 343
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=29.07 E-value=2.7e+02 Score=26.18 Aligned_cols=137 Identities=18% Similarity=0.212 Sum_probs=74.6
Q ss_pred ccceeeccccccccCCChhhH----HHHHHHHhcCCcEEecCCCCCCHHHHHhc---CC--------CceeEEEccc--c
Q 025657 74 SMPIMIAPTAFQKMAHPEGEC----ATARAASAAGTIMTLSSWATSSVEEVSST---GP--------GIRFFQLYVT--K 136 (249)
Q Consensus 74 ~~Pi~iaP~g~~~l~h~~gE~----~~AraA~~~gi~~~lss~ss~sleeia~~---~~--------~~~wfQlY~~--~ 136 (249)
.-|++||=+|.+ ++|++ ++..||+++|.-.+== +.-++-+.+... .+ +..-||+|=. -
T Consensus 13 ~~~~iIAEig~N----HnG~le~A~~lIdaAk~aGADavKf-Qt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~~ 87 (347)
T COG2089 13 KKPFIIAEIGAN----HNGDLERAKELIDAAKEAGADAVKF-QTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAET 87 (347)
T ss_pred CCcEEEeeeccc----ccCcHHHHHHHHHHHHHcCcceeee-ecccccccccccccCCccccccccccccHHHHHHHhcC
Confidence 358999888865 44554 7778999998776521 222233333211 11 1223555532 2
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCC
Q 025657 137 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 216 (249)
Q Consensus 137 d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 216 (249)
+.+-..+|.+.|++-|.- +=+..++.+--|+=+.+..|. + . .-...++
T Consensus 88 p~e~~~~Lke~a~~~Gi~-----~~SSPfd~~svd~l~~~~~~a------y---K------------------IaS~E~~ 135 (347)
T COG2089 88 PLEWHAQLKEYARKRGII-----FFSSPFDLTAVDLLESLNPPA------Y---K------------------IASGEIN 135 (347)
T ss_pred CHHHHHHHHHHHHHcCeE-----EEecCCCHHHHHHHHhcCCCe------E---E------------------ecCcccc
Confidence 455666888999998852 223344444444444332220 0 0 0013456
Q ss_pred HHHHHHHHHhCCCCEEE-EccCCHHHHHHHhh
Q 025657 217 WKDVKWLQTITSLPILV-KGVLTAEDGSKLLS 247 (249)
Q Consensus 217 W~dl~wlr~~~~lPivl-KGIl~~eDA~~A~~ 247 (249)
|-++=......+.|+|+ -|+-+-+|-..|++
T Consensus 136 ~~plik~iA~~~kPiIlSTGma~~~ei~~av~ 167 (347)
T COG2089 136 DLPLIKYIAKKGKPIILSTGMATIEEIEEAVA 167 (347)
T ss_pred ChHHHHHHHhcCCCEEEEcccccHHHHHHHHH
Confidence 65544444455668887 47888777777764
No 344
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=28.95 E-value=55 Score=28.46 Aligned_cols=34 Identities=32% Similarity=0.467 Sum_probs=28.9
Q ss_pred CHHHHHHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 216 NWKDVKWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 216 tW~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
+++-|+.+.+.+++||.+= ||-+.|||++..+.|
T Consensus 61 n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~G 95 (229)
T PF00977_consen 61 NLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAG 95 (229)
T ss_dssp HHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhC
Confidence 4567899999999999995 699999999999876
No 345
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=28.90 E-value=3.5e+02 Score=24.62 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=50.5
Q ss_pred eccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCC-CceeEEEccccC-------------hHHHHHH
Q 025657 79 IAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKH-------------RNVDAQL 144 (249)
Q Consensus 79 iaP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~-~~~wfQlY~~~d-------------~~~~~~l 144 (249)
|.=+|+--|.||+- ..+.+.+.+.|....+.|.++..-+++.+..+ +...+++.+... -+.+.+-
T Consensus 76 V~i~GGEPLL~pdl-~eiv~~~~~~g~~v~l~TNG~ll~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~ 154 (318)
T TIGR03470 76 VSIPGGEPLLHPEI-DEIVRGLVARKKFVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEA 154 (318)
T ss_pred EEEeCccccccccH-HHHHHHHHHcCCeEEEecCceehHHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHH
Confidence 33356666889874 47788888889888888887765444443322 234567766432 1355677
Q ss_pred HHHHHHcCCcEEE
Q 025657 145 VKRAERAGFKAIA 157 (249)
Q Consensus 145 i~rA~~aG~~alv 157 (249)
|+.+.++|+..-+
T Consensus 155 I~~l~~~G~~v~v 167 (318)
T TIGR03470 155 IREAKARGFRVTT 167 (318)
T ss_pred HHHHHHCCCcEEE
Confidence 8888889987544
No 346
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=28.68 E-value=84 Score=25.98 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=42.8
Q ss_pred cCcccccceeeccccccccCCChhhHHHHHHHHhcCCcE-EecCCCC-CCHHHHHhcCCCceeEEEccccChHHHHHHHH
Q 025657 69 LGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIM-TLSSWAT-SSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVK 146 (249)
Q Consensus 69 lG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~-~lss~ss-~sleeia~~~~~~~wfQlY~~~d~~~~~~li~ 146 (249)
+-+.++.|+.-=|++..-+ =.++.++- ..+-.. +++..+. ..++.+....+ .=+..|...+.+.....++
T Consensus 48 lr~~~~iPVV~I~~s~~Di-----l~al~~a~-~~~~~Iavv~~~~~~~~~~~~~~ll~--~~i~~~~~~~~~e~~~~i~ 119 (176)
T PF06506_consen 48 LRKHVSIPVVEIPISGFDI-----LRALAKAK-KYGPKIAVVGYPNIIPGLESIEELLG--VDIKIYPYDSEEEIEAAIK 119 (176)
T ss_dssp HHCC-SS-EEEE---HHHH-----HHHHHHCC-CCTSEEEEEEESS-SCCHHHHHHHHT---EEEEEEESSHHHHHHHHH
T ss_pred HHHhCCCCEEEECCCHhHH-----HHHHHHHH-hcCCcEEEEecccccHHHHHHHHHhC--CceEEEEECCHHHHHHHHH
Confidence 3344456766545433221 12444433 333232 2333332 34677766543 2456677789999999999
Q ss_pred HHHHcCCcEEEE
Q 025657 147 RAERAGFKAIAL 158 (249)
Q Consensus 147 rA~~aG~~alvv 158 (249)
++++.|+++++=
T Consensus 120 ~~~~~G~~viVG 131 (176)
T PF06506_consen 120 QAKAEGVDVIVG 131 (176)
T ss_dssp HHHHTT--EEEE
T ss_pred HHHHcCCcEEEC
Confidence 999999998863
No 347
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=28.67 E-value=3.5e+02 Score=27.80 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=46.8
Q ss_pred HHHHHHHhcCCcEEecCC------------------CCCCHHHHHhc-----CC-CceeEEE---ccc-cCh----HHHH
Q 025657 95 ATARAASAAGTIMTLSSW------------------ATSSVEEVSST-----GP-GIRFFQL---YVT-KHR----NVDA 142 (249)
Q Consensus 95 ~~AraA~~~gi~~~lss~------------------ss~sleeia~~-----~~-~~~wfQl---Y~~-~d~----~~~~ 142 (249)
.+.+.++++|..+++++. ...+++.++.. .+ ..+-+++ |+. .|. +...
T Consensus 258 ~~~~iakeaGY~~afT~~~G~~~~~~~~~LpRi~I~~~~sl~~f~~~v~~~~~~~~~r~~h~dld~vyd~dp~qq~~~L~ 337 (671)
T PRK14582 258 IALEELKKLGYDMAFTLESGLANASQLDSIPRVLIANNPSLKEFAQQIITVQEKSPQRVMHIDLDYVYDENPQQQDRNID 337 (671)
T ss_pred HHHHHHHHCCCeEEEEeCCCCCCCCCcCccceEEecCCCCHHHHHHHHhcccCCCCEEEEEeccccccCCCHHHHHHHHH
Confidence 577788899998887731 23456666532 12 3478998 443 343 4555
Q ss_pred HHHHHHHHcCCcEEEEee
Q 025657 143 QLVKRAERAGFKAIALTV 160 (249)
Q Consensus 143 ~li~rA~~aG~~alvvTv 160 (249)
.+|+|.++.|.+++++-+
T Consensus 338 ~lLdrlk~~G~ntV~lqa 355 (671)
T PRK14582 338 VLIQRVKDMQISTVYLQA 355 (671)
T ss_pred HHHHHHHHcCCCEEEEEe
Confidence 899999999999999999
No 348
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=28.61 E-value=1.9e+02 Score=28.62 Aligned_cols=62 Identities=18% Similarity=0.116 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCcEEecCCCCCCHHHHHh---cCCCceeEEEcccc-C-hHHHHHHHHHHHHcCCcEEEE
Q 025657 95 ATARAASAAGTIMTLSSWATSSVEEVSS---TGPGIRFFQLYVTK-H-RNVDAQLVKRAERAGFKAIAL 158 (249)
Q Consensus 95 ~~AraA~~~gi~~~lss~ss~sleeia~---~~~~~~wfQlY~~~-d-~~~~~~li~rA~~aG~~alvv 158 (249)
.++++|-++|..++.|-.+ ..++++.. .. +....-+.... + -+...+.+++|+++|++-|++
T Consensus 219 ~v~eaAL~aGAdiINsVs~-~~~d~~~~l~a~~-g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIl 285 (499)
T TIGR00284 219 DELYEALKAGASGVIMPDV-ENAVELASEKKLP-EDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAA 285 (499)
T ss_pred HHHHHHHHcCCCEEEECCc-cchhHHHHHHHHc-CCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEE
Confidence 5777777788888886544 34666532 22 22333333221 2 277788999999999976544
No 349
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=28.45 E-value=90 Score=28.06 Aligned_cols=29 Identities=34% Similarity=0.480 Sum_probs=23.9
Q ss_pred HHHHHHHHhCCCCEEE-EccCCHHHHHHHh
Q 025657 218 KDVKWLQTITSLPILV-KGVLTAEDGSKLL 246 (249)
Q Consensus 218 ~dl~wlr~~~~lPivl-KGIl~~eDA~~A~ 246 (249)
+.++.+|+.+++|+++ =||.++|||+...
T Consensus 188 ~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~ 217 (259)
T PF00290_consen 188 EFIKRIKKHTDLPVAVGFGISTPEQAKKLA 217 (259)
T ss_dssp HHHHHHHHTTSS-EEEESSS-SHHHHHHHH
T ss_pred HHHHHHHhhcCcceEEecCCCCHHHHHHHH
Confidence 4588999999999999 5999999999876
No 350
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=28.44 E-value=1.1e+02 Score=26.77 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 139 NVDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 139 ~~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
..+.+++++++++|.+..+.|||.+.
T Consensus 210 ~~~~~~v~~~~~~g~~v~~WTVn~~~ 235 (252)
T cd08574 210 QLSAQEIREYSKANISVNLYVVNEPW 235 (252)
T ss_pred cCCHHHHHHHHHCCCEEEEEccCCHH
Confidence 34668999999999999999999754
No 351
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=28.31 E-value=1.2e+02 Score=28.54 Aligned_cols=38 Identities=21% Similarity=0.077 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHhC---------CCCEEEEccC--CHHHHHHHhhCC
Q 025657 212 DRSLNWKDVKWLQTIT---------SLPILVKGVL--TAEDGSKLLSKE 249 (249)
Q Consensus 212 ~~~~tW~dl~wlr~~~---------~lPivlKGIl--~~eDA~~A~~~~ 249 (249)
.|.++|+-|+.|++.. +.|+|+-|-. ..|+.++|++.|
T Consensus 217 ~p~L~~~~L~~i~~~~~~~~gl~~~~~pLVlHGgSG~~~e~~~~ai~~G 265 (340)
T cd00453 217 NVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYG 265 (340)
T ss_pred CCccCHHHHHHHHHHHHhhcccCCCCCceEEeCCCCCCHHHHHHHHHcC
Confidence 4789999999999988 7899999975 457778888776
No 352
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=27.67 E-value=2.2e+02 Score=25.51 Aligned_cols=69 Identities=16% Similarity=0.080 Sum_probs=49.3
Q ss_pred HHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 96 TARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 96 ~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
++..-...|.+..+.+........+....++...+=+-..+....+.+.++.|++.|++.|.+|--...
T Consensus 148 ~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~s 216 (281)
T COG1737 148 LAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADS 216 (281)
T ss_pred HHHHHHHcCCceeEecchHHHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 555566677777766554444433444556667777777788888889999999999999999965433
No 353
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=27.53 E-value=59 Score=25.83 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCCCC
Q 025657 140 VDAQLVKRAERAGFKAIALTVDTPRLG 166 (249)
Q Consensus 140 ~~~~li~rA~~aG~~alvvTvD~p~~g 166 (249)
-.++++++|++.|++.|++|==-...|
T Consensus 17 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~ 43 (175)
T PF02811_consen 17 SPEEYVEQAKEKGLDAIAITDHNNFAG 43 (175)
T ss_dssp SHHHHHHHHHHTTESEEEEEEETTTTT
T ss_pred CHHHHHHHHHHcCCCEEEEcCCccccc
Confidence 457899999999999999984433433
No 354
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=27.45 E-value=3.5e+02 Score=22.24 Aligned_cols=37 Identities=16% Similarity=0.308 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHhC-CCCEEEEccCCHHHHHHHhhCC
Q 025657 213 RSLNWKDVKWLQTIT-SLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 213 ~~~tW~dl~wlr~~~-~lPivlKGIl~~eDA~~A~~~~ 249 (249)
+...|+.++++++.. +.||+.=|=.+++++..+.+.|
T Consensus 136 ~~~g~~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~~~G 173 (196)
T TIGR00693 136 PPAGVELLREIAATSIDIPIVAIGGITLENAAEVLAAG 173 (196)
T ss_pred CCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcC
Confidence 356799999998876 4899988755899999888765
No 355
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=27.35 E-value=70 Score=22.03 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHhCCCCEEE
Q 025657 214 SLNWKDVKWLQTITSLPILV 233 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivl 233 (249)
.-+|+.+++|+++++.||.+
T Consensus 47 ~~d~~~~~~l~~~~~~pia~ 66 (67)
T PF01188_consen 47 PDDLDGLAELRQQTSVPIAA 66 (67)
T ss_dssp TTSHHHHHHHHHHCSSEEEE
T ss_pred CCCHHHHHHHHHhCCCCEEe
Confidence 45689999999999999964
No 356
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=27.30 E-value=1.5e+02 Score=26.41 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHcCCcEEEEee
Q 025657 140 VDAQLVKRAERAGFKAIALTV 160 (249)
Q Consensus 140 ~~~~li~rA~~aG~~alvvTv 160 (249)
.+.+++++++++|.+..+.||
T Consensus 233 ~~~~~v~~~~~~Gl~v~~WTv 253 (286)
T cd08606 233 MCPRLIQVVKRSGLVCVSYGV 253 (286)
T ss_pred hChHHHHHHHHCCcEEEEECC
Confidence 345888999999999999998
No 357
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=27.24 E-value=3.6e+02 Score=22.23 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=27.5
Q ss_pred CHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 216 NWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 216 tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
.-+.++.+++..+.|+++=|=.++|++..+.++|
T Consensus 146 ~~~~i~~~~~~~~~~i~~~GGI~~~~i~~~~~~G 179 (202)
T cd04726 146 PEDDLKKVKKLLGVKVAVAGGITPDTLPEFKKAG 179 (202)
T ss_pred CHHHHHHHHhhcCCCEEEECCcCHHHHHHHHhcC
Confidence 3366777777667899999777899999998876
No 358
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=27.01 E-value=1.6e+02 Score=26.93 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCC-
Q 025657 137 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL- 215 (249)
Q Consensus 137 d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 215 (249)
+.+...+.+++..+.||+++=+-|+....=.|-+.+|..+ | ...+.-=.+-............+..+--.++..++
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~d~~~v~~vr~~~--~-~~~l~vDaN~~~~~~~a~~~~~l~~~~~~~iEeP~~ 208 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKITPQIMHQLVKLRRLRF--P-QIPLVIDANESYDLQDFPRLKELDRYQLLYIEEPFK 208 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeCCchhHHHHHHHHHhC--C-CCcEEEECCCCCCHHHHHHHHHHhhCCCcEEECCCC
Q ss_pred --CHHHHHHHHHhCCCCEEEEc--cCCHHHHHHHhhCC
Q 025657 216 --NWKDVKWLQTITSLPILVKG--VLTAEDGSKLLSKE 249 (249)
Q Consensus 216 --tW~dl~wlr~~~~lPivlKG--Il~~eDA~~A~~~~ 249 (249)
+|+.+++||+.++.||.+ | +.++.|.+.+++.|
T Consensus 209 ~~~~~~~~~l~~~~~~pia~-dEs~~~~~~~~~~~~~~ 245 (324)
T TIGR01928 209 IDDLSMLDELAKGTITPICL-DESITSLDDARNLIELG 245 (324)
T ss_pred hhHHHHHHHHHhhcCCCEee-CCCcCCHHHHHHHHHcC
No 359
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.91 E-value=2.5e+02 Score=24.62 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=20.1
Q ss_pred CChhhHHHHHHHHhcCCcEEecCC
Q 025657 89 HPEGECATARAASAAGTIMTLSSW 112 (249)
Q Consensus 89 h~~gE~~~AraA~~~gi~~~lss~ 112 (249)
|.|||+ +|+-.++.|+..+.||.
T Consensus 77 s~DGEl-iA~~l~kfG~~~IRGSs 99 (214)
T COG2121 77 SRDGEL-IARLLEKFGLRVIRGSS 99 (214)
T ss_pred CcCHHH-HHHHHHHcCceEEeccC
Confidence 788887 68889999999999886
No 360
>PRK06361 hypothetical protein; Provisional
Probab=26.88 E-value=67 Score=27.18 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 139 NVDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 139 ~~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
....+++++|.+.|+++|++|==.+.
T Consensus 10 ~~~~e~v~~A~~~Gl~~i~iTDH~~~ 35 (212)
T PRK06361 10 LIPSELVRRARVLGYRAIAITDHADA 35 (212)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCCC
Confidence 34679999999999999999955443
No 361
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=26.50 E-value=4.1e+02 Score=24.51 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHh--CCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTI--TSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~--~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
.-+++.++.||++ ++.||..== +.+..|++..++.|
T Consensus 219 ~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~ 257 (352)
T cd03328 219 SDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAH 257 (352)
T ss_pred hhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcC
Confidence 3467889999999 889988732 45788888877653
No 362
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=26.49 E-value=65 Score=22.02 Aligned_cols=49 Identities=8% Similarity=0.031 Sum_probs=24.2
Q ss_pred HHHHHHhcCCcEEecCCCCCCHHHHHhcCCCceeEEEcccc-ChHHHHHHHHH
Q 025657 96 TARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTK-HRNVDAQLVKR 147 (249)
Q Consensus 96 ~AraA~~~gi~~~lss~ss~sleeia~~~~~~~wfQlY~~~-d~~~~~~li~r 147 (249)
+...-++.||+..+-+....++ +...+...|.++|+.. |-+...++|+.
T Consensus 15 i~~~L~~~gI~~~v~~~~~~~~---~g~~g~~~~~~v~V~~~d~~~A~~il~~ 64 (67)
T PF09413_consen 15 IKGLLEENGIPAFVKNEHMSGY---AGEPGTGGQVEVYVPEEDYERAREILEE 64 (67)
T ss_dssp HHHHHHHTT--EE--S----SS------S--SSSEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHhCCCcEEEECCccchh---hcccCccCceEEEECHHHHHHHHHHHHH
Confidence 3444577999999877555554 2223344579999986 44666677764
No 363
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=26.17 E-value=1.1e+02 Score=28.65 Aligned_cols=25 Identities=12% Similarity=0.059 Sum_probs=14.7
Q ss_pred HHHHhcCCcEEecCCCCC--CHHHHHh
Q 025657 98 RAASAAGTIMTLSSWATS--SVEEVSS 122 (249)
Q Consensus 98 raA~~~gi~~~lss~ss~--sleeia~ 122 (249)
..|.+.++|++|-.-=.. ++|.|..
T Consensus 79 ~~A~~~~VPV~lHLDH~~~~~~e~i~~ 105 (340)
T cd00453 79 QMAEHYGVPVILHTDHCAKKLLPWIDG 105 (340)
T ss_pred HHHHHCCCCEEEEcCCCCCCCHHHHHH
Confidence 355566777777654333 6666653
No 364
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=26.05 E-value=73 Score=26.70 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=22.1
Q ss_pred cccChHHHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 134 VTKHRNVDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 134 ~~~d~~~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
...+.+...+++++++++||+..++-|.++.
T Consensus 101 tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~ 131 (199)
T PF06414_consen 101 TLSNPSKLRKLIREAKAAGYKVELYYVAVPP 131 (199)
T ss_dssp -TTSSHHHHHHHHHHHCTT-EEEEEEE---H
T ss_pred CCCChhHHHHHHHHHHcCCceEEEEEEECCH
Confidence 4567788888999999999999998888754
No 365
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=26.04 E-value=3.2e+02 Score=25.51 Aligned_cols=12 Identities=33% Similarity=0.362 Sum_probs=5.8
Q ss_pred HHHHHHHHcCCc
Q 025657 143 QLVKRAERAGFK 154 (249)
Q Consensus 143 ~li~rA~~aG~~ 154 (249)
+.++.|++.|.+
T Consensus 117 ~~i~~ak~~g~~ 128 (365)
T TIGR02660 117 RLVSFARDRGLF 128 (365)
T ss_pred HHHHHHHhCCCE
Confidence 444555555543
No 366
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=25.93 E-value=1.3e+02 Score=28.36 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=41.8
Q ss_pred ChhhHHHHHHHHhcCCcEEecCCCC----CC---HHH------------H-------HhcCCCceeEEEccccChHHH--
Q 025657 90 PEGECATARAASAAGTIMTLSSWAT----SS---VEE------------V-------SSTGPGIRFFQLYVTKHRNVD-- 141 (249)
Q Consensus 90 ~~gE~~~AraA~~~gi~~~lss~ss----~s---lee------------i-------a~~~~~~~wfQlY~~~d~~~~-- 141 (249)
.+-=.++.+||++.+.|.+|...-+ .. +++ + ++...-|..+.| |....
T Consensus 31 ~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHL----DHg~~~~ 106 (350)
T PRK09197 31 TDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVILHT----DHCAKKL 106 (350)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEEC----CCCCCcc
Confidence 3334589999999999999865321 11 343 1 222334445555 77666
Q ss_pred HHHHHHHHHcC-----------CcEEEEeecCCC
Q 025657 142 AQLVKRAERAG-----------FKAIALTVDTPR 164 (249)
Q Consensus 142 ~~li~rA~~aG-----------~~alvvTvD~p~ 164 (249)
.+++++|-++| |+.+++ |...
T Consensus 107 ~~~i~~ai~~g~~~v~~a~~~gftSVMi--DgS~ 138 (350)
T PRK09197 107 LPWIDGLLDAGEKHFAAGGKPLFSSHMI--DLSE 138 (350)
T ss_pred hHHHHHHHHhhHHHHHhcCCCCceeEEe--eCCC
Confidence 56677777766 888754 5444
No 367
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=25.88 E-value=2.2e+02 Score=26.98 Aligned_cols=64 Identities=11% Similarity=0.038 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCcEEecCCCCCCHHHH----Hhc--CCCceeEEEcccc-------ChHHHHHHHHHHHHcCCcEEE
Q 025657 94 CATARAASAAGTIMTLSSWATSSVEEV----SST--GPGIRFFQLYVTK-------HRNVDAQLVKRAERAGFKAIA 157 (249)
Q Consensus 94 ~~~AraA~~~gi~~~lss~ss~sleei----a~~--~~~~~wfQlY~~~-------d~~~~~~li~rA~~aG~~alv 157 (249)
..+..-|..+|++|+-+......+.++ .++ .+|+.++++|.+- +...+.+..+.|.+.||=-|.
T Consensus 220 kd~~~ia~a~g~~YVA~~s~~~~~~~~~~~i~eA~~~~Gps~I~v~sPC~~~G~~~~~~~~~~~~klAVetG~wpLy 296 (365)
T cd03377 220 KDLGMIAMSYGNVYVAQIALGANDNQTLKAFREAEAYDGPSLIIAYSPCIAHGIKGGMTKSQEQQKLAVESGYWPLY 296 (365)
T ss_pred cCHHHHHHHcCCCEEEEEecccCHHHHHHHHHHHhcCCCCEEEEEEccCcccCccCChhhHHHHHHHHHHcCCCeEE
Confidence 567777888899999876544344443 333 4588898888741 456777888999999996654
No 368
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=25.87 E-value=3.3e+02 Score=25.97 Aligned_cols=31 Identities=26% Similarity=0.243 Sum_probs=23.6
Q ss_pred HHHHHHHhC--CCCEEEE-ccCCHHHHHHHhhCC
Q 025657 219 DVKWLQTIT--SLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 219 dl~wlr~~~--~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
-|..+++.. +.||++= ||.+..|..+|+..|
T Consensus 297 ~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLG 330 (383)
T cd03332 297 ALPEIVEAVGDRLTVLFDSGVRTGADIMKALALG 330 (383)
T ss_pred HHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcC
Confidence 455666654 4788875 699999999998766
No 369
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=25.82 E-value=1.2e+02 Score=26.55 Aligned_cols=34 Identities=26% Similarity=0.145 Sum_probs=28.5
Q ss_pred CHHHHHHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 216 NWKDVKWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 216 tW~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
+.+-++.+++..++||.+= ||-+.||++++.+.|
T Consensus 61 n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G 95 (228)
T PRK04128 61 NLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIG 95 (228)
T ss_pred hHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCC
Confidence 4566788888899999986 799999999988765
No 370
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=25.66 E-value=2.3e+02 Score=25.33 Aligned_cols=80 Identities=19% Similarity=0.262 Sum_probs=47.4
Q ss_pred HHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCC
Q 025657 117 VEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMD 196 (249)
Q Consensus 117 leeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~ 196 (249)
|.||+.+.|...++.- + ....++.+.-+++|+.+|-|-.|...+|-
T Consensus 51 IAEiKraSPs~G~i~~----~-~d~~~~a~~y~~~GA~aiSVlTe~~~F~G----------------------------- 96 (254)
T PF00218_consen 51 IAEIKRASPSKGDIRE----D-FDPAEIAKAYEEAGAAAISVLTEPKFFGG----------------------------- 96 (254)
T ss_dssp EEEE-SEETTTEESBS----S--SHHHHHHHHHHTT-SEEEEE--SCCCHH-----------------------------
T ss_pred EEEeecCCCCCCccCc----c-CCHHHHHHHHHhcCCCEEEEECCCCCCCC-----------------------------
Confidence 4677766664433321 2 22336666667899999999988544210
Q ss_pred CCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 197 KTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
+++||..+|+.+++|+.-|= |.++-.-..|..+|
T Consensus 97 -------------------s~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~G 131 (254)
T PF00218_consen 97 -------------------SLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAG 131 (254)
T ss_dssp -------------------HHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT
T ss_pred -------------------CHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcC
Confidence 46788889999999999887 45666666666555
No 371
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=25.62 E-value=1.1e+02 Score=26.52 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=27.0
Q ss_pred HHHHHHHHhCC-CCEEEEccCCHHHHHHHhhCC
Q 025657 218 KDVKWLQTITS-LPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 218 ~dl~wlr~~~~-lPivlKGIl~~eDA~~A~~~~ 249 (249)
+-|+++++..+ +.|-.=.|+++|+|+.|+++|
T Consensus 48 ~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aG 80 (204)
T TIGR01182 48 DAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAG 80 (204)
T ss_pred HHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC
Confidence 55899988764 667778899999999999987
No 372
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=25.61 E-value=65 Score=23.52 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.3
Q ss_pred CCCCEEEEccCCHHHHHHHhh
Q 025657 227 TSLPILVKGVLTAEDGSKLLS 247 (249)
Q Consensus 227 ~~lPivlKGIl~~eDA~~A~~ 247 (249)
..|.+++.|--++||++.|++
T Consensus 56 ~sGki~itGaks~~~~~~a~~ 76 (86)
T PF00352_consen 56 SSGKIVITGAKSEEEAKKAIE 76 (86)
T ss_dssp TTSEEEEEEESSHHHHHHHHH
T ss_pred cCCEEEEEecCCHHHHHHHHH
Confidence 479999999999999999986
No 373
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=25.39 E-value=97 Score=28.44 Aligned_cols=65 Identities=11% Similarity=0.124 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCcEEecCCCCCCHHHHHhcCC-----------CceeEEEccccChHHHHHHHHHHHHcCCcEEEEe
Q 025657 95 ATARAASAAGTIMTLSSWATSSVEEVSSTGP-----------GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALT 159 (249)
Q Consensus 95 ~~AraA~~~gi~~~lss~ss~sleeia~~~~-----------~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvT 159 (249)
.+--+-...+..++.=+.-...+++|.+..| ...|.+++..-++....+++++.++.|++.|+|.
T Consensus 208 rl~gvi~a~~~~~i~~n~p~~~ld~v~~llpg~~~pTi~~l~~~~~vav~~vv~~~~~~~~~~~lk~~GA~~Ilv~ 283 (290)
T COG0040 208 RLKGVIEARGSKYIMLNAPRERLDEVTALLPGMEGPTILPLADPGWVAVHAVVDESLVWETMEKLKALGASDILVL 283 (290)
T ss_pred HHHHHHhhcceeEEEeeCCHHHHHHHHHhccCCCCCcccccCCCCeEEEEEEecchhHHHHHHHHHhcCcceeEEe
Confidence 3334445566666665555556777765432 3469999999999999999999999999999864
No 374
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=25.36 E-value=2.7e+02 Score=20.99 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=26.7
Q ss_pred eeEEEccccChHHHHHHHHHHHHcCCcEEEEeecC
Q 025657 128 RFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDT 162 (249)
Q Consensus 128 ~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~ 162 (249)
.-+=+-..+.-..+.+.+++|++.|++.|.+|=..
T Consensus 50 ~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 50 VVIAISNSGETDELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34444455666677899999999999999999753
No 375
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=25.33 E-value=1e+02 Score=25.72 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=23.2
Q ss_pred HHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 220 VKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 220 l~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
+..+.+..+.++|+.||-+.++...+.+.|
T Consensus 195 l~~~~~~~~~~via~gVe~~~~~~~l~~~G 224 (236)
T PF00563_consen 195 LINLAKSLGIKVIAEGVESEEQLELLKELG 224 (236)
T ss_dssp HHHHHHHTT-EEEEECE-SHHHHHHHHHTT
T ss_pred HHHHhhccccccceeecCCHHHHHHHHHcC
Confidence 444555679999999999999999998876
No 376
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=25.26 E-value=2.9e+02 Score=23.80 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=41.4
Q ss_pred hHHHHHHHHhcC--CcE-EecCCCCCCHHHHHhcCC-CceeEEEccccC---------------hHHHHHHHHHHHHcCC
Q 025657 93 ECATARAASAAG--TIM-TLSSWATSSVEEVSSTGP-GIRFFQLYVTKH---------------RNVDAQLVKRAERAGF 153 (249)
Q Consensus 93 E~~~AraA~~~g--i~~-~lss~ss~sleeia~~~~-~~~wfQlY~~~d---------------~~~~~~li~rA~~aG~ 153 (249)
+..+.+.+.+.+ +.+ ++... ..+++..+.. +..+++++.... -+...+.++.|++.|+
T Consensus 53 ~~~~i~~l~~~~~~~~~~~l~~~---~~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~ 129 (265)
T cd03174 53 DWEVLRAIRKLVPNVKLQALVRN---REKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGL 129 (265)
T ss_pred HHHHHHHHHhccCCcEEEEEccC---chhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 334444455544 555 44432 2555554322 457888888665 4567788889999998
Q ss_pred cEEEEeecCC
Q 025657 154 KAIALTVDTP 163 (249)
Q Consensus 154 ~alvvTvD~p 163 (249)
+..+-..|+.
T Consensus 130 ~v~~~~~~~~ 139 (265)
T cd03174 130 EVEGSLEDAF 139 (265)
T ss_pred eEEEEEEeec
Confidence 7666665653
No 377
>PLN02245 ATP phosphoribosyl transferase
Probab=25.22 E-value=3e+02 Score=26.52 Aligned_cols=60 Identities=17% Similarity=0.284 Sum_probs=45.2
Q ss_pred HHhcCCcEEecCCCCCCHHHHHhc------CC---C---------------ceeEEEccccChHHHHHHHHHHHHcCCcE
Q 025657 100 ASAAGTIMTLSSWATSSVEEVSST------GP---G---------------IRFFQLYVTKHRNVDAQLVKRAERAGFKA 155 (249)
Q Consensus 100 A~~~gi~~~lss~ss~sleeia~~------~~---~---------------~~wfQlY~~~d~~~~~~li~rA~~aG~~a 155 (249)
-.+.+-.++.-+....++|+|.+. .| + .-|+-+...-++....+++++-+++|++.
T Consensus 298 l~A~~~~~v~~Nvp~~~le~v~~~~~~~~~lPG~~~PTVspl~~~~~~~~~~~w~AV~~vV~~~~v~~~~~~Lk~~GA~~ 377 (403)
T PLN02245 298 LRAEGQFTVTANMRGSSAEEVAERVLSQPSLSGLQGPTISPVYCKRDGKVAVDYYAIVICVPKKALYESVQQLRKIGGSG 377 (403)
T ss_pred HhhhcEEEEEecCChhhHHHHHHhhhccccCCCCCCCccccccccccccCCCCEEEEEEEEcHHHHHHHHHHHHHcCCCe
Confidence 445556666667777788888765 21 1 14777777778999999999999999999
Q ss_pred EEEe
Q 025657 156 IALT 159 (249)
Q Consensus 156 lvvT 159 (249)
|+|+
T Consensus 378 IlV~ 381 (403)
T PLN02245 378 VLVS 381 (403)
T ss_pred EEEE
Confidence 9876
No 378
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=25.20 E-value=85 Score=28.85 Aligned_cols=68 Identities=25% Similarity=0.256 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHH
Q 025657 143 QLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKW 222 (249)
Q Consensus 143 ~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~w 222 (249)
+-.+-|+++||.++.+.+-+|. |+|..= +. . .--+-++|+.
T Consensus 28 ~~a~iae~~g~~~v~~~~~~ps------d~~~~g------------g~-------------~--------Rm~~p~~I~a 68 (293)
T PRK04180 28 EQAKIAEEAGAVAVMALERVPA------DIRAAG------------GV-------------A--------RMADPKMIEE 68 (293)
T ss_pred HHHHHHHHhChHHHHHccCCCc------hHhhcC------------Ce-------------e--------ecCCHHHHHH
Confidence 4457889999999988888776 332110 00 0 0124478999
Q ss_pred HHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 223 LQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 223 lr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
+++..++||+.| =|-+-.+|....+.|
T Consensus 69 Ik~~V~iPVigk~Righ~~Ea~~L~~~G 96 (293)
T PRK04180 69 IMDAVSIPVMAKARIGHFVEAQILEALG 96 (293)
T ss_pred HHHhCCCCeEEeehhhHHHHHHHHHHcC
Confidence 999999999987 344456666555443
No 379
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.20 E-value=5.6e+02 Score=24.43 Aligned_cols=124 Identities=13% Similarity=0.063 Sum_probs=66.2
Q ss_pred cCCcEEecCCC--CCCHHHHHhc-----CCCceeEEEccccChHHHHHHHHHHHHc-CCcEEEEeecCCCCCCchhhhhc
Q 025657 103 AGTIMTLSSWA--TSSVEEVSST-----GPGIRFFQLYVTKHRNVDAQLVKRAERA-GFKAIALTVDTPRLGRREADIKN 174 (249)
Q Consensus 103 ~gi~~~lss~s--s~sleeia~~-----~~~~~wfQlY~~~d~~~~~~li~rA~~a-G~~alvvTvD~p~~g~Re~d~r~ 174 (249)
.+++.-.++.+ ..+.|++.+. ..|..-|++-+..+.+...+.++.++++ |- .+.+-||+.. ++-..+-..
T Consensus 181 ~~v~~y~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v~avRe~vG~-~~~L~vDaN~-~w~~~~A~~ 258 (415)
T cd03324 181 EGYPAYTTSAGWLGYSDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRCRLAREVIGP-DNKLMIDANQ-RWDVPEAIE 258 (415)
T ss_pred cCCceeecCCcccCCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHHhcCC-CCeEEEECCC-CCCHHHHHH
Confidence 45665533211 2355655322 2355678887655666666777777764 54 5567888643 332222111
Q ss_pred cCCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhC---CCCEEEE-ccCCHHHHHHHhhCC
Q 025657 175 RFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTIT---SLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 175 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~---~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
-. +.+....+ .|+...+ +.-+++.+++|++++ +.||..= -+.+..|.+..++.|
T Consensus 259 ~~--------~~L~~~~l------------~~iEEP~-~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~ 316 (415)
T cd03324 259 WV--------KQLAEFKP------------WWIEEPT-SPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAG 316 (415)
T ss_pred HH--------HHhhccCC------------CEEECCC-CCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcC
Confidence 00 00100000 0111111 344678899999988 6898773 267888888877653
No 380
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=25.15 E-value=3.8e+02 Score=23.17 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
.+.+-++.+++.++.|++.=| |-+.||-+++.+.|
T Consensus 178 ~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G 213 (229)
T PF00977_consen 178 PDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAG 213 (229)
T ss_dssp --HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCC
Confidence 456778899999999998864 77999998887655
No 381
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=25.15 E-value=97 Score=26.61 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=25.8
Q ss_pred CHHHHHHHHHh-----CCCCEEEEccCCHHHHHHHhhCC
Q 025657 216 NWKDVKWLQTI-----TSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 216 tW~dl~wlr~~-----~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
+.+.|+++|+. .+..|.|=|=.+.+-+.+++++|
T Consensus 149 ~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~~aG 187 (201)
T PF00834_consen 149 VLEKIRELRKLIPENGLDFEIEVDGGINEENIKQLVEAG 187 (201)
T ss_dssp HHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHHHcC
Confidence 45667777664 34788999999988888888776
No 382
>PLN02411 12-oxophytodienoate reductase
Probab=25.09 E-value=98 Score=29.37 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=26.9
Q ss_pred HHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 220 VKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 220 l~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
.+.+|+.++.||++=|=.++++|..+++.|
T Consensus 305 a~~ik~~v~~pvi~~G~i~~~~a~~~l~~g 334 (391)
T PLN02411 305 MRTLRRAYQGTFMCSGGFTRELGMQAVQQG 334 (391)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHHcC
Confidence 377999999999999999999999998865
No 383
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=25.00 E-value=2.1e+02 Score=24.43 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCC
Q 025657 140 VDAQLVKRAERAGFKAIALTVDTP 163 (249)
Q Consensus 140 ~~~~li~rA~~aG~~alvvTvD~p 163 (249)
...+++++++++|.+..+.||+.+
T Consensus 188 ~~~~~i~~~~~~g~~v~~Wtvn~~ 211 (230)
T cd08563 188 LTEEVVEELKKRGIPVRLWTVNEE 211 (230)
T ss_pred cCHHHHHHHHHCCCEEEEEecCCH
Confidence 456889999999999999999864
No 384
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=24.78 E-value=1.2e+02 Score=25.29 Aligned_cols=30 Identities=23% Similarity=0.166 Sum_probs=24.8
Q ss_pred HHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 220 VKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 220 l~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
+..+.+..+.++|+.||-+.++...+.+.|
T Consensus 194 l~~~~~~~~~~via~gVe~~~~~~~~~~~g 223 (240)
T cd01948 194 IIALAHSLGLKVVAEGVETEEQLELLRELG 223 (240)
T ss_pred HHHHHHHCCCeEEEEecCCHHHHHHHHHcC
Confidence 444555678999999999999999998876
No 385
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=24.66 E-value=26 Score=22.51 Aligned_cols=30 Identities=37% Similarity=0.432 Sum_probs=24.6
Q ss_pred HHhCChhhhhhhccCc-----cchHHHHHHHHhhc
Q 025657 18 KEKLPKMVYDYYASGA-----EDQWTLQENRNAFS 47 (249)
Q Consensus 18 ~~~Lp~~~~~Y~~gGa-----~de~t~~~N~~af~ 47 (249)
..+|+...|+-+-.|+ ..|.|.+.=+.||+
T Consensus 4 a~Rl~~AgF~~i~~g~g~~~~~eeEt~qkL~~AF~ 38 (41)
T PF11590_consen 4 AERLRSAGFATIGSGAGLPSSEEEETRQKLRRAFD 38 (41)
T ss_dssp HHHHHHTT-EEECTTS------HHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHhccCccccchhhHHHHHHHHHHHH
Confidence 4678889999999999 88999999999986
No 386
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=24.66 E-value=3.3e+02 Score=21.89 Aligned_cols=74 Identities=16% Similarity=0.011 Sum_probs=0.0
Q ss_pred cccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcCCC-ceeEEEccccCh-----HHHHHHHHHHHHcCCcEEEE
Q 025657 85 QKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPG-IRFFQLYVTKHR-----NVDAQLVKRAERAGFKAIAL 158 (249)
Q Consensus 85 ~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~~~-~~wfQlY~~~d~-----~~~~~li~rA~~aG~~alvv 158 (249)
+++...+.-..+++.+.+.|+.-++-+. .-++.+.+..++ ..=+-.-+.... +.+.+++++|+++|+.++.+
T Consensus 7 ~~~~d~~~~~~~~~~~~~~gv~gi~~~g--~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v 84 (201)
T cd00945 7 HPDATLEDIAKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDV 84 (201)
T ss_pred CCCCCHHHHHHHHHHHHHhCCcEEEECH--HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Q ss_pred ee
Q 025657 159 TV 160 (249)
Q Consensus 159 Tv 160 (249)
+.
T Consensus 85 ~~ 86 (201)
T cd00945 85 VI 86 (201)
T ss_pred ec
No 387
>PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This domain belongs to a more diverse superfamily, including catalytic domain of the mRNA capping enzyme (IPR001339 from INTERPRO) and NAD-dependent DNA ligase (IPR001679 from INTERPRO) []. ; GO: 0003910 DNA ligase (ATP) activity, 0005524 ATP binding, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3RR5_A 1X9N_A 2CFM_A 3QWU_B 3GDE_A 2Q2U_C 2Q2T_A 1FVI_A 1P8L_A 2VUG_A ....
Probab=24.61 E-value=2.2e+02 Score=23.52 Aligned_cols=41 Identities=29% Similarity=0.530 Sum_probs=32.8
Q ss_pred eeEEEccccChHHHHHHHHHHHHcCCcEEEE-eecCCCC-CCc
Q 025657 128 RFFQLYVTKHRNVDAQLVKRAERAGFKAIAL-TVDTPRL-GRR 168 (249)
Q Consensus 128 ~wfQlY~~~d~~~~~~li~rA~~aG~~alvv-TvD~p~~-g~R 168 (249)
...+.+...+.+...++.+++.+.|+..+|+ ..|++.. |+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~g~EG~v~K~~~~~Y~~Gkr 194 (202)
T PF01068_consen 152 RIVESYVVNSKEELEELFEEAIDQGFEGLVLKDPDSPYEPGKR 194 (202)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHTTSSEEEEEETTSSC-TTEE
T ss_pred eEeeeecCCCHHHHHHHHHHHHHcCCceEEEECCCCccCCCCc
Confidence 4455666788899999999999999999999 6788774 454
No 388
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=24.48 E-value=87 Score=27.83 Aligned_cols=68 Identities=7% Similarity=0.019 Sum_probs=40.8
Q ss_pred HHHHHHhcCC--cEEecCCCCCCHHHHHhcCCCceeEEEcc-----------------------------ccChH---HH
Q 025657 96 TARAASAAGT--IMTLSSWATSSVEEVSSTGPGIRFFQLYV-----------------------------TKHRN---VD 141 (249)
Q Consensus 96 ~AraA~~~gi--~~~lss~ss~sleeia~~~~~~~wfQlY~-----------------------------~~d~~---~~ 141 (249)
+.....+.+. ..++||++..+++.+.+..|...-..|+- .-+.. .+
T Consensus 160 v~~~i~~~~~~~~viisSF~~~~l~~l~~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 239 (282)
T cd08605 160 ILAVCKQHAPGRRIMFSSFDPDAAVLLRALQSLYPVMFLTDCGPYTHNDPRRNSIEAAIQVALEGGLQGIVSEVKVLLRN 239 (282)
T ss_pred HHHHHHhcCCCCeEEEEeCCHHHHHHHHhcCccCCEEEEecCCCccccCchhhhHHHHHHHHHHcCCceEEecHHHhhcC
Confidence 4443444443 46888888888888876655322111110 00111 25
Q ss_pred HHHHHHHHHcCCcEEEEee--cCC
Q 025657 142 AQLVKRAERAGFKAIALTV--DTP 163 (249)
Q Consensus 142 ~~li~rA~~aG~~alvvTv--D~p 163 (249)
.+++++|+++|.+..+.|| |.+
T Consensus 240 ~~~v~~~~~~Gl~v~vWTv~~n~~ 263 (282)
T cd08605 240 PTAVSLVKASGLELGTYGKLNNDA 263 (282)
T ss_pred cHHHHHHHHcCcEEEEeCCCCCCH
Confidence 5788888889998888888 653
No 389
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=24.40 E-value=1.4e+02 Score=26.72 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=18.2
Q ss_pred cChHHHHHHHHHHH---HcCCcEEEEe
Q 025657 136 KHRNVDAQLVKRAE---RAGFKAIALT 159 (249)
Q Consensus 136 ~d~~~~~~li~rA~---~aG~~alvvT 159 (249)
++.+...++++||+ +||+.+|++-
T Consensus 152 rt~~~a~~~i~ra~a~~~AGA~~i~lE 178 (254)
T cd06557 152 KTEEEAERLLEDALALEEAGAFALVLE 178 (254)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 34555678888887 5999999874
No 390
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=24.38 E-value=2.6e+02 Score=22.56 Aligned_cols=67 Identities=18% Similarity=0.115 Sum_probs=35.8
Q ss_pred CChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcC----CCceeEEEccccChHHHHHHHHHHHHcCCcEE
Q 025657 89 HPEGECATARAASAAGTIMTLSSWATSSVEEVSSTG----PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAI 156 (249)
Q Consensus 89 h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~----~~~~wfQlY~~~d~~~~~~li~rA~~aG~~al 156 (249)
|--|-.-++...++.|.-.+- .....|.|++.+++ +...-+=-++-.......+++++.++.|....
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~-LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~ 84 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVN-LGVLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGI 84 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCC
Confidence 555555667777777765542 12345677775432 21111112223445556677777777776433
No 391
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=24.36 E-value=52 Score=26.96 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=12.7
Q ss_pred CceeEEEccccChHHHHHHHHHHHHcCC
Q 025657 126 GIRFFQLYVTKHRNVDAQLVKRAERAGF 153 (249)
Q Consensus 126 ~~~wfQlY~~~d~~~~~~li~rA~~aG~ 153 (249)
...|+|+....+. -.++++++|.
T Consensus 99 kv~W~QlGi~n~e-----a~~~~~~aG~ 121 (140)
T COG1832 99 KVVWLQLGIRNEE-----AAEKARDAGL 121 (140)
T ss_pred CeEEEecCcCCHH-----HHHHHHHhCc
Confidence 4467777654433 2255566665
No 392
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=24.13 E-value=1.2e+02 Score=24.99 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 140 VDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 140 ~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
.+-.|++++...|.+.+|.|.|-..
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~~q 41 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDEAQ 41 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 6678999999999999999999643
No 393
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=24.09 E-value=1.4e+02 Score=25.49 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCCCCEEEEc--------cC---CHHHHHHHhhCC
Q 025657 217 WKDVKWLQTITSLPILVKG--------VL---TAEDGSKLLSKE 249 (249)
Q Consensus 217 W~dl~wlr~~~~lPivlKG--------Il---~~eDA~~A~~~~ 249 (249)
+++++.+|+.++.||+... +. +.+++..|.++|
T Consensus 45 ~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aG 88 (221)
T PRK01130 45 VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAG 88 (221)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcC
Confidence 5788999999999987332 21 356788888876
No 394
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=24.06 E-value=1.5e+02 Score=27.45 Aligned_cols=56 Identities=20% Similarity=0.257 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCcEEecCCCCCCHHHHHhcCCC--------ceeEEEccccChHHHHHHHHHHHHcC
Q 025657 94 CATARAASAAGTIMTLSSWATSSVEEVSSTGPG--------IRFFQLYVTKHRNVDAQLVKRAERAG 152 (249)
Q Consensus 94 ~~~AraA~~~gi~~~lss~ss~sleeia~~~~~--------~~wfQlY~~~d~~~~~~li~rA~~aG 152 (249)
.++.+.|.+.||+.=||-.|..+..|+.+.... .++.. ...|.++.+.++...+.|
T Consensus 152 k~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~s~~PviaSHSN~~al~---~h~RNl~D~qlkaI~~~g 215 (313)
T COG2355 152 KELVREMNELGIIIDLSHLSDKTFWDVLDLSKAPVVASHSNARALV---DHPRNLSDEQLKAIAETG 215 (313)
T ss_pred HHHHHHHHhcCCEEEecccCCccHHHHHhccCCceEEecCCchhcc---CCCCCCCHHHHHHHHhcC
Confidence 478899999999999999999999999875432 22332 356667777777777654
No 395
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=23.81 E-value=3.8e+02 Score=27.73 Aligned_cols=31 Identities=6% Similarity=0.190 Sum_probs=25.5
Q ss_pred HHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 219 DVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 219 dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
..+.+|+.++.||+.=| |.++++|+.+++.|
T Consensus 678 ~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g 709 (765)
T PRK08255 678 FADRIRNEAGIATIAVGAISEADHVNSIIAAG 709 (765)
T ss_pred HHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcC
Confidence 34788999999988766 56999999999865
No 396
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=23.79 E-value=3.9e+02 Score=22.96 Aligned_cols=79 Identities=11% Similarity=-0.028 Sum_probs=47.0
Q ss_pred ccccccCCChhhHHHHHHHHhcCCcEEecCCCCCC-H-HHHHhcCC------------CceeEEEccccChHHHHHHHHH
Q 025657 82 TAFQKMAHPEGECATARAASAAGTIMTLSSWATSS-V-EEVSSTGP------------GIRFFQLYVTKHRNVDAQLVKR 147 (249)
Q Consensus 82 ~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~s-l-eeia~~~~------------~~~wfQlY~~~d~~~~~~li~r 147 (249)
+|+--+.|++.-..+++.+++.|+..++.|.++.+ + +.+.+..+ .+.-++-|...+.+.+.+.++.
T Consensus 77 sGGEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~~~~~~~~~ll~~~d~v~islk~~~~e~~~~~~g~~~~~~l~~i~~ 156 (246)
T PRK11145 77 SGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFARY 156 (246)
T ss_pred eCccHhcCHHHHHHHHHHHHHcCCCEEEECCCCCCcchHHHHHHHHhCCEEEECCCcCChhhcccccCCChHHHHHHHHH
Confidence 45555667766668999999999999999988754 2 32222111 0111222222234556666778
Q ss_pred HHHcCCcEEEEee
Q 025657 148 AERAGFKAIALTV 160 (249)
Q Consensus 148 A~~aG~~alvvTv 160 (249)
+.+.|.+..+=++
T Consensus 157 l~~~g~~v~i~~~ 169 (246)
T PRK11145 157 LAKRNQKTWIRYV 169 (246)
T ss_pred HHhCCCcEEEEEE
Confidence 8888876554443
No 397
>TIGR00113 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase. This model describes the enzyme for S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA). QueA synthesizes Queuosine which is usually in the first position of the anticodon of tRNAs specific for asparagine, aspartate, histidine, and tyrosine.
Probab=23.70 E-value=2e+02 Score=27.07 Aligned_cols=111 Identities=16% Similarity=0.220 Sum_probs=62.7
Q ss_pred HHHHHHhhcccceeccccCCCCCCccc--eeecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcE-------Ee
Q 025657 39 LQENRNAFSRILFRPRILRDVSKIDMT--TTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIM-------TL 109 (249)
Q Consensus 39 ~~~N~~af~~~~l~pr~l~~v~~~d~s--t~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~-------~l 109 (249)
+.+-.+.+.++-+-|-.=++-+.-|-+ =|+|.+.--+ .-|||++-.+ .-| +-..-++.|+.+ .+
T Consensus 138 ~~~~l~~~G~~PlPPYI~r~~~~~D~~rYQTVyA~~~GS--VAAPTAGLHF---t~~--ll~~l~~kGv~~a~vTLHVG~ 210 (344)
T TIGR00113 138 LLDVLESYGHMPLPPYIKRPDEKADEERYQTVYSKKPGA--VAAPTAGLHF---SEE--LLEKLKAKGVQYAFITLHVGA 210 (344)
T ss_pred HHHHHHhcCCCCCCcccCCCCcccchhhccccccCCCCc--eecCCCccCC---CHH--HHHHHHHCCCeEEEEEEeecC
Confidence 444455566666544332222211211 2455544322 4567776533 223 444445555543 45
Q ss_pred cCCCCCCHHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeec
Q 025657 110 SSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVD 161 (249)
Q Consensus 110 ss~ss~sleeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD 161 (249)
||+-....|+|.+.-.-.-||-+ .+.+.+.|++|++.|-+.|.|..-
T Consensus 211 GTF~PV~~e~i~~H~mH~E~~~v-----~~~ta~~i~~ak~~G~RIiAVGTT 257 (344)
T TIGR00113 211 GTFRPVEADNIEDHVMHAEYYEV-----PQETVEALNKTRENGGRIIAVGTT 257 (344)
T ss_pred CCCcCccccccccCCcccEEEEE-----CHHHHHHHHHHHHcCCeEEEEccc
Confidence 66666667888776555568877 345779999999999987776543
No 398
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=23.60 E-value=57 Score=22.75 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEccCCHHHHH
Q 025657 213 RSLNWKDVKWLQTITSLPILVKGVLTAEDGS 243 (249)
Q Consensus 213 ~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~ 243 (249)
...+|..+.-+-+.|.- |||.|+|||+
T Consensus 46 ~~~~~~Yi~~Il~~W~~----~gi~T~e~~~ 72 (73)
T TIGR01446 46 NKANYKYIDAILNNWKN----NGIKTVEDVE 72 (73)
T ss_pred CCCCHHHHHHHHHHHHH----cCCCCHHHHh
Confidence 46789999999999976 6999999986
No 399
>PTZ00413 lipoate synthase; Provisional
Probab=23.60 E-value=5.5e+02 Score=24.69 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=39.4
Q ss_pred CChhhHHHHHHHHhcCCcEEecCCCCC-C------------HHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcE
Q 025657 89 HPEGECATARAASAAGTIMTLSSWATS-S------------VEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKA 155 (249)
Q Consensus 89 h~~gE~~~AraA~~~gi~~~lss~ss~-s------------leeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~a 155 (249)
.++.=...|+++++.|+-++|=|.... . +++|.+..|+. -+.+-+ .|-....+.+++..+||...
T Consensus 178 D~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~-~Ievli-gDf~g~~e~l~~L~eAG~dv 255 (398)
T PTZ00413 178 DPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPEL-LLEALV-GDFHGDLKSVEKLANSPLSV 255 (398)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCC-eEEEcC-CccccCHHHHHHHHhcCCCE
Confidence 444445999999999998876554432 1 23333323321 222221 11111335667777888887
Q ss_pred EEEeecC
Q 025657 156 IALTVDT 162 (249)
Q Consensus 156 lvvTvD~ 162 (249)
+--.+.|
T Consensus 256 ynHNLET 262 (398)
T PTZ00413 256 YAHNIEC 262 (398)
T ss_pred Eeccccc
Confidence 7666665
No 400
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=23.35 E-value=3.7e+02 Score=23.53 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEee
Q 025657 139 NVDAQLVKRAERAGFKAIALTV 160 (249)
Q Consensus 139 ~~~~~li~rA~~aG~~alvvTv 160 (249)
..+.++++.++++|.+..+.|+
T Consensus 210 ~~~~~~v~~~~~~Gl~v~~wT~ 231 (265)
T cd08564 210 FWTEEFVKKAHENGLKVMTYFD 231 (265)
T ss_pred hhhHHHHHHHHHcCCEEEEecC
Confidence 3567888999999999998883
No 401
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=23.29 E-value=1.5e+02 Score=25.08 Aligned_cols=70 Identities=17% Similarity=0.297 Sum_probs=42.6
Q ss_pred HHHHHHHhcCC--cEEecCCCCCCHHHHHhcCCCcee-E--------------EEccccChHHHHHHHHHHHHcCCcEEE
Q 025657 95 ATARAASAAGT--IMTLSSWATSSVEEVSSTGPGIRF-F--------------QLYVTKHRNVDAQLVKRAERAGFKAIA 157 (249)
Q Consensus 95 ~~AraA~~~gi--~~~lss~ss~sleeia~~~~~~~w-f--------------QlY~~~d~~~~~~li~rA~~aG~~alv 157 (249)
.+++.-.+.|. ..+++|+....+..+.+..|.... + ..|-..-...+.+++++++++|.+..+
T Consensus 116 ~v~~~l~~~~~~~~v~v~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~v~~ 195 (220)
T cd08579 116 KFVKLYKQNLIENQHQVHSLDYRVIEKVKKLDPKIKTGYILPFNIGNLPKTNVDFYSIEYSTLNKEFIRQAHQNGKKVYV 195 (220)
T ss_pred HHHHHHHHcCCCcCeEEEeCCHHHHHHHHHHCCCCeEEEEEecccCcccccCceEEeeehhhcCHHHHHHHHHCCCEEEE
Confidence 45555555553 456777766667777665553211 0 011111223466899999999999999
Q ss_pred EeecCCC
Q 025657 158 LTVDTPR 164 (249)
Q Consensus 158 vTvD~p~ 164 (249)
.|||.+.
T Consensus 196 wtvn~~~ 202 (220)
T cd08579 196 WTVNDPD 202 (220)
T ss_pred EcCCCHH
Confidence 9998643
No 402
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=23.10 E-value=4.4e+02 Score=21.87 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=19.2
Q ss_pred HHHHHHHHhC-CCCEEEEccCCHHHHHHHhhCC
Q 025657 218 KDVKWLQTIT-SLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 218 ~dl~wlr~~~-~lPivlKGIl~~eDA~~A~~~~ 249 (249)
+-++++++.. ..|++.=|=.+++++....++|
T Consensus 132 ~~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~G 164 (190)
T cd00452 132 AYIKALKGPFPQVRFMPTGGVSLDNAAEWLAAG 164 (190)
T ss_pred HHHHHHHhhCCCCeEEEeCCCCHHHHHHHHHCC
Confidence 3455666554 3677766333777777666654
No 403
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.97 E-value=1.4e+02 Score=26.20 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 215 LNWKDVKWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 215 ~tW~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
.+.+-|+.|.+..++||.+= ||-+.||+++..+.|
T Consensus 63 ~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~G 98 (234)
T PRK13587 63 REFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAG 98 (234)
T ss_pred chHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCC
Confidence 34567889999999999985 799999999998876
No 404
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=22.95 E-value=95 Score=28.90 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcCCcEEecCCCCCCHHHHHhc
Q 025657 93 ECATARAASAAGTIMTLSSWATSSVEEVSST 123 (249)
Q Consensus 93 E~~~AraA~~~gi~~~lss~ss~sleeia~~ 123 (249)
...+.+.+++.|.|+++||..+ +++||..+
T Consensus 122 n~pLL~~~A~~gkPvilStGma-tl~Ei~~A 151 (329)
T TIGR03569 122 NAPLLKKIARFGKPVILSTGMA-TLEEIEAA 151 (329)
T ss_pred CHHHHHHHHhcCCcEEEECCCC-CHHHHHHH
No 405
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=22.76 E-value=2.6e+02 Score=25.20 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=18.8
Q ss_pred cChHHHHHHHHHHH---HcCCcEEEEe
Q 025657 136 KHRNVDAQLVKRAE---RAGFKAIALT 159 (249)
Q Consensus 136 ~d~~~~~~li~rA~---~aG~~alvvT 159 (249)
++.+...++++||+ +||+.+|++-
T Consensus 155 rt~~~a~~~i~ra~a~~eAGA~~i~lE 181 (264)
T PRK00311 155 RDEEAAEKLLEDAKALEEAGAFALVLE 181 (264)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 45566778888887 5999999984
No 406
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=22.74 E-value=2.8e+02 Score=22.15 Aligned_cols=26 Identities=15% Similarity=0.027 Sum_probs=14.7
Q ss_pred HHHHHHHhcCC-cEEecCCCCCCHHHH
Q 025657 95 ATARAASAAGT-IMTLSSWATSSVEEV 120 (249)
Q Consensus 95 ~~AraA~~~gi-~~~lss~ss~sleei 120 (249)
.++++|.+.+. ..++|+..+++++.+
T Consensus 41 ~~v~aa~~~~adiVglS~L~t~~~~~~ 67 (128)
T cd02072 41 EFIDAAIETDADAILVSSLYGHGEIDC 67 (128)
T ss_pred HHHHHHHHcCCCEEEEeccccCCHHHH
Confidence 35556666555 345666666665544
No 407
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=22.61 E-value=2.2e+02 Score=25.86 Aligned_cols=45 Identities=11% Similarity=0.051 Sum_probs=32.3
Q ss_pred ccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhcC
Q 025657 80 APTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTG 124 (249)
Q Consensus 80 aP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~~ 124 (249)
||-+++++.-.+|=.-++++.++.|+|.+.=-.....+|.+++..
T Consensus 57 Sp~sFqG~G~eeGL~~L~~vk~~~GlpvvTeV~~~~~~~~v~~~~ 101 (264)
T PRK05198 57 SIHSFRGPGLEEGLKILQEVKETFGVPVLTDVHEPEQAAPVAEVV 101 (264)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhhC
Confidence 466677764456667899999999999986656656666666553
No 408
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=22.60 E-value=3.5e+02 Score=25.15 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCCEEEE-ccCCHHHHHHHhhCC
Q 025657 218 KDVKWLQTITSLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 218 ~dl~wlr~~~~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
.-|..+++..+.|||.= ||.+..|+.+|+..|
T Consensus 188 ~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~G 220 (321)
T TIGR01306 188 AALRWCAKAARKPIIADGGIRTHGDIAKSIRFG 220 (321)
T ss_pred HHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcC
Confidence 36778888888998875 699999999999876
No 409
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv
Probab=22.52 E-value=2.7e+02 Score=25.29 Aligned_cols=72 Identities=15% Similarity=0.003 Sum_probs=44.8
Q ss_pred hHHHHHHHHhcCC-----cEEecCCCCCCHHHHHhcC--CCceeEEEcc---------------------ccChHH-H--
Q 025657 93 ECATARAASAAGT-----IMTLSSWATSSVEEVSSTG--PGIRFFQLYV---------------------TKHRNV-D-- 141 (249)
Q Consensus 93 E~~~AraA~~~gi-----~~~lss~ss~sleeia~~~--~~~~wfQlY~---------------------~~d~~~-~-- 141 (249)
+..+.+...+.|. ..+++|+...+|+.+.+.. |...-.-++- ..+... .
T Consensus 152 ~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~~p~v~~~~l~~~~~~~~~~~~l~~~~~~a~~v~~~~~~~~~~ 231 (302)
T cd08571 152 VDAVLTSLSKAGYDQTAKKVYISSPDSSVLKSFKKRVGTKLVFRVLDVDDTEPDTLLSNLTEIKKFASGVLVPKSYIWPV 231 (302)
T ss_pred HHHHHHHHHHcCCCCCCCCEEEeCCCHHHHHHHHhccCCCceEEEeecCCCcCCCChhHHHHHHHhcCccccChhHeeec
Confidence 3466677777765 5788888888888887766 4221110100 000000 1
Q ss_pred ---------HHHHHHHHHcCCcEEEEeecCCC
Q 025657 142 ---------AQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 142 ---------~~li~rA~~aG~~alvvTvD~p~ 164 (249)
.+++++|+++|.+..+-||+.+.
T Consensus 232 ~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~ 263 (302)
T cd08571 232 DSDSFLTPQTSVVQDAHKAGLEVYVSGFANEF 263 (302)
T ss_pred CCCCcccCccHHHHHHHHcCCEEEEEEEecCc
Confidence 27789999999999999997644
No 410
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=22.45 E-value=88 Score=26.36 Aligned_cols=35 Identities=17% Similarity=0.463 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 213 RSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 213 ~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
..++|+.++.++ .+.|+++=|=++++....++++|
T Consensus 139 ~~~~~~~l~~~~--~~~PvilaGGI~~~Nv~~~i~~~ 173 (203)
T cd00405 139 KTFDWSLLRGLA--SRKPVILAGGLTPDNVAEAIRLV 173 (203)
T ss_pred ceEChHHhhccc--cCCCEEEECCCChHHHHHHHHhc
Confidence 467999888777 67899999988999999888754
No 411
>COG3084 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.42 E-value=51 Score=24.18 Aligned_cols=29 Identities=24% Similarity=0.218 Sum_probs=20.4
Q ss_pred eEEEccccChH--HHHHHHHHHHHcCCcEEE
Q 025657 129 FFQLYVTKHRN--VDAQLVKRAERAGFKAIA 157 (249)
Q Consensus 129 wfQlY~~~d~~--~~~~li~rA~~aG~~alv 157 (249)
-+|.||++|.+ .++-|.+-|.++||+.-+
T Consensus 12 llqp~w~k~~dlnl~q~lqkla~eagf~~~l 42 (88)
T COG3084 12 LLQPAWQKEPDLNLLQFLQKLAKESGFDGEL 42 (88)
T ss_pred HhhHHhccCCCccHHHHHHHHHHHhcccccH
Confidence 35777777775 455666778899997643
No 412
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=22.38 E-value=2e+02 Score=24.86 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCC
Q 025657 140 VDAQLVKRAERAGFKAIALTVDTP 163 (249)
Q Consensus 140 ~~~~li~rA~~aG~~alvvTvD~p 163 (249)
...+++++++++|.+..+.||+.+
T Consensus 219 ~~~~~i~~~~~~G~~v~vwtvn~~ 242 (263)
T cd08567 219 VTKELVDEAHALGLKVVPWTVNDP 242 (263)
T ss_pred cCHHHHHHHHHCCCEEEEecCCCH
Confidence 345788888999999888898753
No 413
>PRK11633 cell division protein DedD; Provisional
Probab=22.35 E-value=1.7e+02 Score=25.78 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=32.0
Q ss_pred eeEEEccccChHHHHHHHHHHHHcCCcEEEEeecC
Q 025657 128 RFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDT 162 (249)
Q Consensus 128 ~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~ 162 (249)
.+.||=-++|.+...+|.++.+.+||+|-+..+++
T Consensus 150 ~vVQlgaf~n~~~A~~l~~kL~~~G~~Ay~~~~~~ 184 (226)
T PRK11633 150 YVVQLGALKNADKVNEIVAKLRLSGYRVYTVPSTP 184 (226)
T ss_pred EEEEecccCCHHHHHHHHHHHHHCCCeeEEEeeec
Confidence 45999999999999999999999999999987764
No 414
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=22.28 E-value=1.1e+02 Score=27.11 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHhCCCCEEEE---ccCCHHHHHHHhhCC
Q 025657 214 SLNWKDVKWLQTITSLPILVK---GVLTAEDGSKLLSKE 249 (249)
Q Consensus 214 ~~tW~dl~wlr~~~~lPivlK---GIl~~eDA~~A~~~~ 249 (249)
.-|-+|++-+++..+..+=|| ||-+.|||+.-+++|
T Consensus 167 gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~ag 205 (228)
T COG0274 167 GATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEAG 205 (228)
T ss_pred CCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHHh
Confidence 557899999999999999999 999999999988876
No 415
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=22.25 E-value=1.8e+02 Score=27.25 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=18.5
Q ss_pred cChHHHHHHHHHHH---HcCCcEEEEe
Q 025657 136 KHRNVDAQLVKRAE---RAGFKAIALT 159 (249)
Q Consensus 136 ~d~~~~~~li~rA~---~aG~~alvvT 159 (249)
++.+...+++++|+ +||+.+||+-
T Consensus 176 r~~~~a~~li~dA~ale~AGAf~ivLE 202 (332)
T PLN02424 176 RTAESAVKVVETALALQEAGCFAVVLE 202 (332)
T ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEc
Confidence 35566778888886 6999999975
No 416
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=22.24 E-value=1.3e+02 Score=28.47 Aligned_cols=31 Identities=13% Similarity=0.349 Sum_probs=27.3
Q ss_pred HHHHHHHhCCCCEEEEc-cCCHHHHHHHhhCC
Q 025657 219 DVKWLQTITSLPILVKG-VLTAEDGSKLLSKE 249 (249)
Q Consensus 219 dl~wlr~~~~lPivlKG-Il~~eDA~~A~~~~ 249 (249)
..+.++...+.|++.=| |-+++.|+.+++.|
T Consensus 279 ~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g 310 (363)
T COG1902 279 FAARIKKAVRIPVIAVGGINDPEQAEEILASG 310 (363)
T ss_pred HHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcC
Confidence 35668888899999999 99999999999876
No 417
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=22.22 E-value=6.2e+02 Score=23.84 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=61.8
Q ss_pred cccceeccccCCCCCCccce----eecCcccccceeeccccccccCCChhhHHHHHHHHhcCCcEE-----ecCCCCCCH
Q 025657 47 SRILFRPRILRDVSKIDMTT----TVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMT-----LSSWATSSV 117 (249)
Q Consensus 47 ~~~~l~pr~l~~v~~~d~st----~llG~~~~~Pi~iaP~g~~~l~h~~gE~~~AraA~~~gi~~~-----lss~ss~sl 117 (249)
.+++|-|..++....+...+ .++|.. .-|++.+-+=-.++ .|+.=..++..+...|+-++ ++++..++.
T Consensus 95 ~D~~~p~~~~~~f~GP~~Gi~g~R~~lgv~-~rPl~~tiiKP~GL-~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~ 172 (364)
T cd08210 95 VDFELPPSLLRRFPGPRFGIAGLRALLGIP-ERPLLCSALKPQGL-SAAELAELAYAFALGGIDIIKDDHGLADQPFAPF 172 (364)
T ss_pred EEecCCHHHHhcCCCCCCChHHHHHHhCCC-CCceEEEEeccccC-CHHHHHHHHHHHHhcCCCeeecCccccCccCCCH
Confidence 45555555555544433221 244422 45554332111133 24333467777888898876 777888887
Q ss_pred HHHHhc--------C---CCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCC
Q 025657 118 EEVSST--------G---PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTP 163 (249)
Q Consensus 118 eeia~~--------~---~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p 163 (249)
||=.++ . +....+=.=+..+.+.+.+..++|+++|+.+++|.+-+-
T Consensus 173 ~eRv~~v~~av~~a~~eTG~~~~y~~Nita~~~em~~ra~~a~~~Ga~~vMv~~~~~ 229 (364)
T cd08210 173 EERVKACQEAVAEANAETGGRTLYAPNVTGPPTQLLERARFAKEAGAGGVLIAPGLT 229 (364)
T ss_pred HHHHHHHHHHHHHHHhhcCCcceEEEecCCCHHHHHHHHHHHHHcCCCEEEeecccc
Confidence 764221 1 122222222234555666667777889999987766543
No 418
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=22.12 E-value=4.9e+02 Score=22.02 Aligned_cols=76 Identities=9% Similarity=-0.000 Sum_probs=45.0
Q ss_pred ccccccCCChhhHHHHHHHHhcCCcEEecCCCCCC--HHHHHhcCC--CceeEEEccc----------cChHHHHHHHHH
Q 025657 82 TAFQKMAHPEGECATARAASAAGTIMTLSSWATSS--VEEVSSTGP--GIRFFQLYVT----------KHRNVDAQLVKR 147 (249)
Q Consensus 82 ~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~s--leeia~~~~--~~~wfQlY~~----------~d~~~~~~li~r 147 (249)
+|+--+.|++--..+.+.+++.|+...+.|.+... -+.+.+... +..++.+.-. .+.+.+.+-++.
T Consensus 72 ~GGEPll~~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~~~~ll~~~d~v~isl~~~~~~~~~~~~g~~~~~v~~~i~~ 151 (235)
T TIGR02493 72 SGGEPLLQPEFLSELFKACKELGIHTCLDTSGFLGGCTEAADELLEYTDLVLLDIKHFNPEKYKKLTGVSLQPTLDFAKY 151 (235)
T ss_pred eCcccccCHHHHHHHHHHHHHCCCCEEEEcCCCCCccHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHCCCcHHHHHHHHH
Confidence 34444668876668899999999988888877544 233332211 2122322211 133455677788
Q ss_pred HHHcCCcEEE
Q 025657 148 AERAGFKAIA 157 (249)
Q Consensus 148 A~~aG~~alv 157 (249)
+.+.|....+
T Consensus 152 l~~~g~~~~v 161 (235)
T TIGR02493 152 LAKRNKPIWI 161 (235)
T ss_pred HHhCCCcEEE
Confidence 8888887543
No 419
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=22.12 E-value=3.9e+02 Score=23.69 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=39.7
Q ss_pred hHHHHHHHHhcCC--cEEecCCCCCC------HHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 93 ECATARAASAAGT--IMTLSSWATSS------VEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 93 E~~~AraA~~~gi--~~~lss~ss~s------leeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
..++-++|++.|. .....+...-+ +|+......+-.-+ .+.|.......+++|.++|...+ ++|+..
T Consensus 52 ~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv---~~~d~~~~~~~v~~a~~aGIpVv--~~d~~~ 126 (322)
T COG1879 52 RKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIII---NPVDPDALTPAVKKAKAAGIPVV--TVDSDI 126 (322)
T ss_pred HHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcCCCEEEE---cCCChhhhHHHHHHHHHCCCcEE--EEecCC
Confidence 4467788888895 33333322222 23332223322222 34688899999999999997765 555544
Q ss_pred C
Q 025657 165 L 165 (249)
Q Consensus 165 ~ 165 (249)
.
T Consensus 127 ~ 127 (322)
T COG1879 127 P 127 (322)
T ss_pred C
Confidence 3
No 420
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins. The mitochondrial DNA of parasitic protozoans is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most me
Probab=22.10 E-value=2.8e+02 Score=22.57 Aligned_cols=39 Identities=21% Similarity=0.167 Sum_probs=29.5
Q ss_pred EEEccccChHHHHHHHHHHHHcCCcEEEEe-ecCCCCCCc
Q 025657 130 FQLYVTKHRNVDAQLVKRAERAGFKAIALT-VDTPRLGRR 168 (249)
Q Consensus 130 fQlY~~~d~~~~~~li~rA~~aG~~alvvT-vD~p~~g~R 168 (249)
.+.+...+.+...++++++.+.|+..||+- .|++..+.|
T Consensus 126 ~~~~~~~~~~~i~~~~~~~~~~g~EGlv~K~~ds~Y~~gR 165 (174)
T cd07896 126 VPQIPVKSNEALDQYLDEVVAAGGEGLMLRRPDAPYETGR 165 (174)
T ss_pred EeeeeeCCHHHHHHHHHHHHhcCCCeEEEecCCCcccCCc
Confidence 344445677888999999999999999998 466654333
No 421
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=21.89 E-value=1.1e+02 Score=29.60 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 139 NVDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 139 ~~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
+...+-+++|++.|+.++|+..|||.
T Consensus 43 ~~l~r~l~~A~~~~a~~vvl~ldTPG 68 (436)
T COG1030 43 DYLQRALQSAEEENAAAVVLELDTPG 68 (436)
T ss_pred HHHHHHHHHHHhCCCcEEEEEecCCC
Confidence 35556778999999999999999987
No 422
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=21.48 E-value=2.5e+02 Score=24.05 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 140 VDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 140 ~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
.+.++++++++.|.+..+.||+.+.
T Consensus 192 ~~~~~v~~~~~~gl~v~~wTvn~~~ 216 (234)
T cd08570 192 FGQAFLPELKKNGKKVFVWTVNTEE 216 (234)
T ss_pred cCHHHHHHHHHCCCEEEEEecCCHH
Confidence 4679999999999999999999753
No 423
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=21.20 E-value=6.3e+02 Score=22.96 Aligned_cols=125 Identities=10% Similarity=-0.047 Sum_probs=0.0
Q ss_pred CCcEEecCCCCCCHHHHHhcCC--CceeEEEccccC-hHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCC
Q 025657 104 GTIMTLSSWATSSVEEVSSTGP--GIRFFQLYVTKH-RNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP 180 (249)
Q Consensus 104 gi~~~lss~ss~sleeia~~~~--~~~wfQlY~~~d-~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~ 180 (249)
++++..+-.+...+.+-++..- |..-|++-+..+ .+.-.+.|+..+++=-.-+.+-||+...=..+.-++-.-.+..
T Consensus 109 ~~~~~~~i~~~~~~~~~a~~~~~~G~~~~KvKvG~~~~~~d~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~ 188 (320)
T PRK02714 109 PLSYSALLPAGEAALQQWQTLWQQGYRTFKWKIGVDPLEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQLCDR 188 (320)
T ss_pred CCceeeecCCCHHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhh
Q ss_pred --ccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEE-EccCCHHHHHHHhhCC
Q 025657 181 --HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV-KGVLTAEDGSKLLSKE 249 (249)
Q Consensus 181 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivl-KGIl~~eDA~~A~~~~ 249 (249)
.+.+.-+...- +.-+|+.+++|++.++.||.+ --+.+..|...+++.|
T Consensus 189 l~~~~i~~iEqP~---------------------~~~~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~ 239 (320)
T PRK02714 189 RLSGKIEFIEQPL---------------------PPDQFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQG 239 (320)
T ss_pred ccCCCccEEECCC---------------------CcccHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcC
No 424
>cd01097 Tetrahydromethanopterin_reductase N5,N10-methylenetetrahydromethanopterin reductase (Mer) catalyzes the reduction of N5,N10-methylenetetrahydromethanopterin with reduced coenzyme F420 to N5-methyltetrahydromethanopterin and oxidized coenzyme F420.
Probab=21.19 E-value=52 Score=27.44 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 025657 137 HRNVDAQLVKRAERAGFKAIALTVDTPRL 165 (249)
Q Consensus 137 d~~~~~~li~rA~~aG~~alvvTvD~p~~ 165 (249)
+.....++.++||++||.++++.+|.-..
T Consensus 13 ~~~~~~~~a~~ae~~Gf~~~w~~lD~lS~ 41 (202)
T cd01097 13 GPRELVELARAAEEAGFDSVWVSLDALSG 41 (202)
T ss_pred CHHHHHHHHHHHHHcCCchhHHhHHHhCC
Confidence 57778899999999999999999997553
No 425
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=21.15 E-value=1.2e+02 Score=27.04 Aligned_cols=32 Identities=31% Similarity=0.265 Sum_probs=25.1
Q ss_pred cccChHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 025657 134 VTKHRNVDAQLVKRAERAGFKAIALTVDTPRL 165 (249)
Q Consensus 134 ~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~ 165 (249)
++-+|+...++|++..++|+++|++.+.-...
T Consensus 59 ~Pw~R~~~A~ll~~L~~~ga~~I~~Di~f~~~ 90 (310)
T PF05226_consen 59 WPWPRSVYARLLDRLAAAGAKAIGFDILFDEP 90 (310)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEEeeecCC
Confidence 34588888889999999999999888866444
No 426
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=21.11 E-value=1.1e+02 Score=26.69 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 139 NVDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 139 ~~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
..+.+++++++++|.+..+.||+.+.
T Consensus 196 ~~~~~~v~~~~~~g~~v~~WTvn~~~ 221 (249)
T PRK09454 196 LLDEARVAALKAAGLRILVYTVNDPA 221 (249)
T ss_pred cCCHHHHHHHHHCCCEEEEEeCCCHH
Confidence 34678999999999999999999754
No 427
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=21.09 E-value=6e+02 Score=22.68 Aligned_cols=62 Identities=24% Similarity=0.227 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCcEEec-----CCCCCCHHHHHhcCC---CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecC
Q 025657 95 ATARAASAAGTIMTLS-----SWATSSVEEVSSTGP---GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDT 162 (249)
Q Consensus 95 ~~AraA~~~gi~~~ls-----s~ss~sleeia~~~~---~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~ 162 (249)
.+|+...+.|...+ | .+-..|+|++..+.. -|. +.+|==.....|.+|..+|+.|+.+-+..
T Consensus 65 ~~A~~y~~~GA~aI-SVlTe~~~F~Gs~~~l~~v~~~v~~Pv-----L~KDFIid~~QI~ea~~~GADavLLI~~~ 134 (247)
T PRK13957 65 QIAKTYETLGASAI-SVLTDQSYFGGSLEDLKSVSSELKIPV-----LRKDFILDEIQIREARAFGASAILLIVRI 134 (247)
T ss_pred HHHHHHHHCCCcEE-EEEcCCCcCCCCHHHHHHHHHhcCCCE-----EeccccCCHHHHHHHHHcCCCEEEeEHhh
Confidence 67777888877544 3 233457777754321 121 12333333445566666677766666554
No 428
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=21.05 E-value=2.3e+02 Score=25.54 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=30.6
Q ss_pred ccccccccCCChhhHHHHHHHHhcCCcEEecCCCCCCHHHHHhc
Q 025657 80 APTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSST 123 (249)
Q Consensus 80 aP~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~sleeia~~ 123 (249)
||-+++++.-.+|=.-+.++.++.|+|.+.=-....-+|.+++.
T Consensus 49 sp~sFqG~G~eeGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~ 92 (258)
T TIGR01362 49 SIHSFRGPGLEEGLKILQKVKEEFGVPILTDVHESSQCEPVAEV 92 (258)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhh
Confidence 46667776435566689999999999998655555555666554
No 429
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.92 E-value=1.7e+02 Score=22.37 Aligned_cols=37 Identities=19% Similarity=0.087 Sum_probs=29.1
Q ss_pred CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecC
Q 025657 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDT 162 (249)
Q Consensus 126 ~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~ 162 (249)
+...+=+-..+.-..+.+.++.|++.|++.+.+|=..
T Consensus 48 ~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (120)
T cd05710 48 KSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDE 84 (120)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCC
Confidence 4455656666777788899999999999999998653
No 430
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=20.88 E-value=4.6e+02 Score=26.07 Aligned_cols=126 Identities=16% Similarity=0.158 Sum_probs=69.1
Q ss_pred CcEEecCCCCCCHHHHHh-------cCCCceeEEEcc--ccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhcc
Q 025657 105 TIMTLSSWATSSVEEVSS-------TGPGIRFFQLYV--TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNR 175 (249)
Q Consensus 105 i~~~lss~ss~sleeia~-------~~~~~~wfQlY~--~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~ 175 (249)
|.+..|...|..+=++.. ..|...|+-+-= .-|...+...|.|.+++|++- -+|--..|. .++.+-
T Consensus 358 INl~a~Dl~s~rli~~~~~~l~~~~v~pqQI~lElTER~f~D~~~~~~iI~r~ReaG~~I---yIDDFGTGY--SnL~YL 432 (524)
T COG4943 358 INLSASDLASPRLIDRLNRKLAQYQVRPQQIALELTERTFADPKKMTPIILRLREAGHEI---YIDDFGTGY--SNLHYL 432 (524)
T ss_pred EeeeehhhcCchHHHHHHHHHHhcCcChHHheeehhhhhhcCchhhhHHHHHHHhcCCeE---EEccCcCcc--hhHHHH
Confidence 444555555554444421 124455766632 237778889999999999985 567433222 222221
Q ss_pred CCCCCccccccccccccCCCCCCCCchhhhHhhhhcCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHhhCC
Q 025657 176 FVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDGSKLLSKE 249 (249)
Q Consensus 176 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~~lPivlKGIl~~eDA~~A~~~~ 249 (249)
-.+| ...+ .-++++...++......+=-++|-.+.+.-++.+|+.||-+.|.+.=-.++|
T Consensus 433 q~L~------------VDaL--KIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaEGVEteeQ~~~LR~~G 492 (524)
T COG4943 433 QSLP------------VDAL--KIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAEGVETEEQVDWLRKRG 492 (524)
T ss_pred hhCC------------ccce--eccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEeecccHHHHHHHHHHcC
Confidence 1121 1000 0111222211111111223467888999999999999999999887555554
No 431
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.81 E-value=1.5e+02 Score=22.32 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=26.2
Q ss_pred eeEEEccccChHHHHHHHHHHHHcCCcEEEEeec
Q 025657 128 RFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVD 161 (249)
Q Consensus 128 ~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD 161 (249)
..+=+-..+.-..+.+.++.|++.|++.|.+|=.
T Consensus 49 ~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 49 LVIAISQSGETADTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 3444555566667889999999999999999965
No 432
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=20.68 E-value=1.9e+02 Score=26.47 Aligned_cols=63 Identities=14% Similarity=0.094 Sum_probs=43.0
Q ss_pred hHHHHHHHHhcCCcEEecCCCC----CC-HHH-------HHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEe
Q 025657 93 ECATARAASAAGTIMTLSSWAT----SS-VEE-------VSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALT 159 (249)
Q Consensus 93 E~~~AraA~~~gi~~~lss~ss----~s-lee-------ia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvT 159 (249)
=.++-+||++.+.|.++...-. .+ .+. +++..+-|.-+- -|.....+.+.+|.++||+.++++
T Consensus 31 ~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lH----lDHg~~~~~~~~ai~~GFsSvMiD 105 (286)
T COG0191 31 LQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALH----LDHGASFEDCKQAIRAGFSSVMID 105 (286)
T ss_pred HHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEE----CCCCCCHHHHHHHHhcCCceEEec
Confidence 3489999999999999865221 12 122 233334333343 488888899999999999998754
No 433
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=20.60 E-value=1.6e+02 Score=26.99 Aligned_cols=48 Identities=17% Similarity=0.306 Sum_probs=37.9
Q ss_pred CHHHHHhcCC---CceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 116 SVEEVSSTGP---GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 116 sleeia~~~~---~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
+..|.+..+| +.+-+|| +...|+...+-++|-++-|+.-|+|-=-+|.
T Consensus 216 pFR~aa~saP~fgDrkcYQl-P~~~R~la~rA~erD~aEGAD~lmVKPg~py 266 (340)
T KOG2794|consen 216 PFREAACSAPKFGDRKCYQL-PANSRGLALRARERDVAEGADILMVKPGLPY 266 (340)
T ss_pred chHHHhhcCcccCCcceeeC-CCchHHHHHHHHHhhhhccCceEEecCCCcH
Confidence 4666665555 5678999 8899999999999999999999998655554
No 434
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=20.37 E-value=6.5e+02 Score=22.84 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=26.0
Q ss_pred cccCCChhhHHHHHHHHhcCCcEEecCCCCC
Q 025657 85 QKMAHPEGECATARAASAAGTIMTLSSWATS 115 (249)
Q Consensus 85 ~~l~h~~gE~~~AraA~~~gi~~~lss~ss~ 115 (249)
--+.||+.=...++.|.+.|+|++++|.+-.
T Consensus 74 IDFT~P~~~~~n~~~~~~~gv~~ViGTTG~~ 104 (275)
T TIGR02130 74 IDYTHPSAVNDNAAFYGKHGIPFVMGTTGGD 104 (275)
T ss_pred EECCChHHHHHHHHHHHHCCCCEEEcCCCCC
Confidence 3466888888899999999999999997643
No 435
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=20.12 E-value=2.2e+02 Score=27.00 Aligned_cols=75 Identities=11% Similarity=0.029 Sum_probs=0.0
Q ss_pred cccccccCCChhhHHHHHHHHhcCCcEEecCCCCC---------------------------CHHHHHhcCCCceeEEEc
Q 025657 81 PTAFQKMAHPEGECATARAASAAGTIMTLSSWATS---------------------------SVEEVSSTGPGIRFFQLY 133 (249)
Q Consensus 81 P~g~~~l~h~~gE~~~AraA~~~gi~~~lss~ss~---------------------------sleeia~~~~~~~wfQlY 133 (249)
.++.-...+.+-=.++.+||++.+.|.+|...-.. -+..+++...-|..+.|
T Consensus 28 AVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPValHL- 106 (357)
T TIGR01520 28 AIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGVPVVLHT- 106 (357)
T ss_pred eEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEEC-
Q ss_pred cccChHHHH--HHHHHHHHcC-----------CcEEEEe
Q 025657 134 VTKHRNVDA--QLVKRAERAG-----------FKAIALT 159 (249)
Q Consensus 134 ~~~d~~~~~--~li~rA~~aG-----------~~alvvT 159 (249)
|..... +.+++|-++| |+.+++.
T Consensus 107 ---DHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiD 142 (357)
T TIGR01520 107 ---DHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMID 142 (357)
T ss_pred ---CCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEee
No 436
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=20.11 E-value=1.3e+02 Score=27.65 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeecCCC
Q 025657 138 RNVDAQLVKRAERAGFKAIALTVDTPR 164 (249)
Q Consensus 138 ~~~~~~li~rA~~aG~~alvvTvD~p~ 164 (249)
...+.+++++++++|.+..+.|||.+.
T Consensus 231 ~~l~~~~v~~~~~~G~~v~vWTVNd~~ 257 (315)
T cd08609 231 QDLSALEIKELRKDNVSVNLWVVNEPW 257 (315)
T ss_pred ccCCHHHHHHHHHCCCEEEEECCCCHH
Confidence 345678999999999999999999754
No 437
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=20.08 E-value=5.9e+02 Score=23.20 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHhcCCcEEecCCCCCC-------HHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeec
Q 025657 91 EGECATARAASAAGTIMTLSSWATSS-------VEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVD 161 (249)
Q Consensus 91 ~gE~~~AraA~~~gi~~~lss~ss~s-------leeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD 161 (249)
.-...+-++|+++|+-+.+...+..+ ++++.+....-.-+ .+.|.+.....+++|.++|...+.+.-|
T Consensus 40 ~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv---~~~d~~al~~~l~~a~~~gIpVV~~d~~ 114 (336)
T PRK15408 40 SGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIV---SAVSPDGLCPALKRAMQRGVKVLTWDSD 114 (336)
T ss_pred HHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEE---ecCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 34557888899999888872222222 22333333322222 2457776778999999999877654444
No 438
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=20.04 E-value=5e+02 Score=24.30 Aligned_cols=83 Identities=19% Similarity=0.239 Sum_probs=49.4
Q ss_pred HHHHHhcCCCceeEEEccccChHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhccCCCCCccccccccccccCCCC
Q 025657 117 VEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMD 196 (249)
Q Consensus 117 leeia~~~~~~~wfQlY~~~d~~~~~~li~rA~~aG~~alvvTvD~p~~g~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~ 196 (249)
|++|.+..+.|...+=- ...+-+++|.++|+++|+|. ..|-|..| +
T Consensus 217 i~~~~~~~~~pvivKgv------~~~~da~~~~~~G~~~i~vs----~hGGr~~d----~-------------------- 262 (356)
T PF01070_consen 217 IEWIRKQWKLPVIVKGV------LSPEDAKRAVDAGVDGIDVS----NHGGRQLD----W-------------------- 262 (356)
T ss_dssp HHHHHHHCSSEEEEEEE-------SHHHHHHHHHTT-SEEEEE----SGTGTSST----T--------------------
T ss_pred HHHHhcccCCceEEEec------ccHHHHHHHHhcCCCEEEec----CCCcccCc----c--------------------
Confidence 45555555555554432 44455688889999998664 33333211 0
Q ss_pred CCCCchhhhHhhhhcCCCCCHHHHHHHHHhC--CCCEEEE-ccCCHHHHHHHhhCC
Q 025657 197 KTDDSGLASYVANQIDRSLNWKDVKWLQTIT--SLPILVK-GVLTAEDGSKLLSKE 249 (249)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~tW~dl~wlr~~~--~lPivlK-GIl~~eDA~~A~~~~ 249 (249)
..-+-+-|..+++.- +.||++= ||.++-|+.+|+..|
T Consensus 263 ----------------~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLG 302 (356)
T PF01070_consen 263 ----------------GPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALG 302 (356)
T ss_dssp ----------------S-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT
T ss_pred ----------------ccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcC
Confidence 012345677788754 5899886 699999999998766
Done!