Query 025658
Match_columns 249
No_of_seqs 124 out of 1214
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 08:09:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 1.7E-54 3.6E-59 375.0 24.2 215 5-220 1-219 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 6.3E-53 1.4E-57 359.6 20.8 223 4-228 11-238 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 9.4E-50 2E-54 334.1 17.8 214 5-244 3-222 (280)
4 PRK09912 L-glyceraldehyde 3-ph 100.0 5.1E-49 1.1E-53 346.0 22.8 213 4-219 12-235 (346)
5 TIGR01293 Kv_beta voltage-depe 100.0 7.9E-49 1.7E-53 341.2 22.5 209 7-219 1-218 (317)
6 PRK10625 tas putative aldo-ket 100.0 5.8E-48 1.3E-52 339.5 24.1 211 5-219 1-246 (346)
7 PLN02587 L-galactose dehydroge 100.0 6.9E-48 1.5E-52 335.0 22.3 206 7-218 1-216 (314)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 1.4E-47 3E-52 328.6 23.8 210 7-222 1-214 (285)
9 KOG1577 Aldo/keto reductase fa 100.0 1.2E-46 2.7E-51 315.6 17.0 219 1-244 1-243 (300)
10 PRK10376 putative oxidoreducta 100.0 7.8E-46 1.7E-50 318.6 21.9 210 1-212 1-218 (290)
11 PF00248 Aldo_ket_red: Aldo/ke 100.0 4.8E-45 1E-49 312.6 19.5 200 19-224 1-205 (283)
12 PRK11172 dkgB 2,5-diketo-D-glu 100.0 5.7E-44 1.2E-48 303.6 20.0 180 15-215 1-187 (267)
13 PRK14863 bifunctional regulato 100.0 4.1E-44 9E-49 307.7 19.2 191 14-217 2-202 (292)
14 KOG1576 Predicted oxidoreducta 100.0 1.4E-42 3.1E-47 282.4 17.5 231 4-236 21-259 (342)
15 COG4989 Predicted oxidoreducta 100.0 1.1E-42 2.3E-47 281.0 13.6 210 5-217 1-219 (298)
16 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.1E-41 2.4E-46 290.6 19.9 188 1-213 1-193 (275)
17 COG1453 Predicted oxidoreducta 100.0 3E-39 6.5E-44 274.2 18.1 205 5-217 1-213 (391)
18 KOG3023 Glutamate-cysteine lig 98.5 3.9E-07 8.5E-12 74.2 6.5 71 136-207 155-227 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 95.0 1.2 2.5E-05 38.8 14.0 155 36-211 134-290 (316)
20 cd03316 MR_like Mandelate race 92.3 5.8 0.00013 35.0 13.8 154 36-208 139-299 (357)
21 cd06543 GH18_PF-ChiA-like PF-C 90.6 11 0.00023 32.7 13.9 183 20-214 72-267 (294)
22 cd03315 MLE_like Muconate lact 90.4 9.8 0.00021 32.1 15.0 157 36-212 85-243 (265)
23 PRK10550 tRNA-dihydrouridine s 88.9 15 0.00033 32.0 13.0 133 36-180 73-224 (312)
24 PRK13796 GTPase YqeH; Provisio 88.9 16 0.00035 32.5 13.5 125 34-169 53-180 (365)
25 TIGR00735 hisF imidazoleglycer 85.0 22 0.00047 29.9 11.5 91 110-203 160-253 (254)
26 cd03323 D-glucarate_dehydratas 84.1 32 0.00069 31.0 14.2 150 36-209 168-321 (395)
27 cd02930 DCR_FMN 2,4-dienoyl-Co 82.8 33 0.00072 30.3 12.6 97 79-179 202-305 (353)
28 cd03174 DRE_TIM_metallolyase D 82.4 7.8 0.00017 32.4 7.8 105 101-207 16-135 (265)
29 PRK08609 hypothetical protein; 82.0 48 0.001 31.5 14.1 148 40-204 351-522 (570)
30 PRK13958 N-(5'-phosphoribosyl) 80.6 6.7 0.00014 32.0 6.5 67 113-181 16-83 (207)
31 COG1140 NarY Nitrate reductase 80.6 0.82 1.8E-05 40.4 1.2 55 148-202 262-317 (513)
32 cd03321 mandelate_racemase Man 80.0 36 0.00077 30.1 11.5 152 37-207 142-295 (355)
33 PF07021 MetW: Methionine bios 79.7 13 0.00027 30.1 7.6 151 42-214 5-173 (193)
34 COG1748 LYS9 Saccharopine dehy 79.6 12 0.00026 33.7 8.2 81 38-133 79-159 (389)
35 PRK08392 hypothetical protein; 79.4 32 0.0007 28.0 13.2 150 39-204 15-178 (215)
36 COG0635 HemN Coproporphyrinoge 79.2 15 0.00033 33.4 8.9 109 17-162 148-276 (416)
37 cd07948 DRE_TIM_HCS Saccharomy 79.0 36 0.00078 28.8 10.7 24 36-59 20-43 (262)
38 cd00308 enolase_like Enolase-s 78.9 18 0.00039 29.7 8.7 87 122-212 120-208 (229)
39 TIGR03247 glucar-dehydr glucar 78.2 56 0.0012 30.0 13.3 156 36-208 180-337 (441)
40 COG2069 CdhD CO dehydrogenase/ 78.0 43 0.00094 29.0 10.6 97 110-211 156-262 (403)
41 COG0135 TrpF Phosphoribosylant 77.6 17 0.00036 29.8 7.9 82 114-204 18-102 (208)
42 COG3172 NadR Predicted ATPase/ 75.7 15 0.00032 29.0 6.7 97 49-150 78-185 (187)
43 cd04740 DHOD_1B_like Dihydroor 75.5 51 0.0011 28.2 13.1 151 36-201 100-286 (296)
44 PRK01222 N-(5'-phosphoribosyl) 75.3 8.9 0.00019 31.3 5.8 66 114-181 19-85 (210)
45 cd08556 GDPD Glycerophosphodie 74.7 38 0.00082 26.3 11.2 148 36-208 11-168 (189)
46 cd03325 D-galactonate_dehydrat 74.0 63 0.0014 28.5 14.1 153 36-207 123-285 (352)
47 PRK14461 ribosomal RNA large s 73.9 48 0.001 29.7 10.3 94 124-217 231-364 (371)
48 TIGR02026 BchE magnesium-proto 73.6 41 0.00089 31.3 10.5 69 131-201 317-392 (497)
49 PF00682 HMGL-like: HMGL-like 73.6 48 0.001 27.2 10.0 121 35-170 11-144 (237)
50 KOG0259 Tyrosine aminotransfer 72.8 73 0.0016 28.7 13.5 65 16-88 62-135 (447)
51 cd03322 rpsA The starvation se 72.3 70 0.0015 28.3 14.5 146 36-208 126-273 (361)
52 TIGR01502 B_methylAsp_ase meth 71.4 32 0.0007 31.2 8.9 86 123-209 265-357 (408)
53 COG1801 Uncharacterized conser 70.9 65 0.0014 27.4 10.9 109 18-133 3-115 (263)
54 cd03318 MLE Muconate Lactonizi 70.1 78 0.0017 28.0 13.2 81 123-207 215-297 (365)
55 PRK07945 hypothetical protein; 70.1 77 0.0017 27.9 16.0 151 38-204 111-288 (335)
56 PRK07259 dihydroorotate dehydr 69.9 68 0.0015 27.5 10.4 153 36-201 102-289 (301)
57 PRK00164 moaA molybdenum cofac 68.6 79 0.0017 27.5 13.7 151 35-203 49-226 (331)
58 PLN02363 phosphoribosylanthran 68.2 19 0.00041 30.5 6.3 67 114-181 63-130 (256)
59 PF03102 NeuB: NeuB family; I 68.1 35 0.00076 28.6 7.9 113 35-167 53-187 (241)
60 PRK05283 deoxyribose-phosphate 67.9 47 0.001 28.2 8.5 79 36-123 144-227 (257)
61 PRK02083 imidazole glycerol ph 67.8 57 0.0012 27.2 9.3 87 114-203 162-251 (253)
62 cd02933 OYE_like_FMN Old yello 66.9 90 0.002 27.5 13.6 40 140-179 274-313 (338)
63 cd00739 DHPS DHPS subgroup of 66.9 39 0.00084 28.6 8.0 101 101-207 21-127 (257)
64 PF13378 MR_MLE_C: Enolase C-t 66.7 8.1 0.00018 27.7 3.4 51 158-208 3-54 (111)
65 PRK15072 bifunctional D-altron 66.3 41 0.00088 30.4 8.5 83 123-209 233-317 (404)
66 cd03314 MAL Methylaspartate am 66.1 51 0.0011 29.5 9.0 84 125-208 230-320 (369)
67 PRK10415 tRNA-dihydrouridine s 65.2 95 0.0021 27.1 10.8 135 36-181 75-225 (321)
68 PRK00730 rnpA ribonuclease P; 65.0 43 0.00094 25.5 7.1 61 79-148 47-109 (138)
69 PF14871 GHL6: Hypothetical gl 64.5 16 0.00034 27.6 4.7 25 186-210 43-67 (132)
70 COG2159 Predicted metal-depend 64.5 78 0.0017 27.3 9.6 97 114-212 55-169 (293)
71 PF05690 ThiG: Thiazole biosyn 64.3 80 0.0017 26.4 9.0 168 18-207 9-182 (247)
72 PRK05692 hydroxymethylglutaryl 63.4 37 0.00081 29.2 7.4 102 101-205 23-138 (287)
73 TIGR00126 deoC deoxyribose-pho 63.3 32 0.0007 28.2 6.6 72 36-121 130-205 (211)
74 PRK09454 ugpQ cytoplasmic glyc 62.9 89 0.0019 26.0 14.9 24 36-59 20-43 (249)
75 PRK13803 bifunctional phosphor 62.6 51 0.0011 31.7 8.8 69 114-182 19-88 (610)
76 COG1751 Uncharacterized conser 61.9 36 0.00078 26.4 6.1 77 33-120 9-85 (186)
77 TIGR03597 GTPase_YqeH ribosome 61.6 1.2E+02 0.0025 27.0 11.4 123 35-168 48-173 (360)
78 COG1168 MalY Bifunctional PLP- 61.0 1.3E+02 0.0027 27.1 12.0 36 37-76 40-75 (388)
79 cd07943 DRE_TIM_HOA 4-hydroxy- 60.8 77 0.0017 26.6 8.8 104 101-206 19-131 (263)
80 cd00405 PRAI Phosphoribosylant 59.9 51 0.0011 26.4 7.3 47 113-166 68-114 (203)
81 PRK02714 O-succinylbenzoate sy 59.6 1.2E+02 0.0026 26.4 13.9 85 122-212 192-277 (320)
82 PRK14017 galactonate dehydrata 59.6 1.3E+02 0.0028 26.8 13.8 154 36-208 124-287 (382)
83 PF05913 DUF871: Bacterial pro 59.2 10 0.00022 33.7 3.3 184 36-239 12-206 (357)
84 PRK02901 O-succinylbenzoate sy 59.0 1.1E+02 0.0023 27.0 9.5 71 140-212 173-244 (327)
85 cd04731 HisF The cyclase subun 59.0 1E+02 0.0022 25.4 9.9 150 36-198 82-242 (243)
86 TIGR03471 HpnJ hopanoid biosyn 58.1 85 0.0018 28.9 9.3 69 134-204 320-395 (472)
87 cd08562 GDPD_EcUgpQ_like Glyce 57.5 1E+02 0.0022 25.0 14.0 25 36-60 11-35 (229)
88 cd03317 NAAAR N-acylamino acid 57.5 52 0.0011 29.0 7.5 147 38-209 139-288 (354)
89 TIGR01928 menC_lowGC/arch o-su 57.5 1.3E+02 0.0028 26.2 15.4 153 36-212 132-286 (324)
90 PRK10605 N-ethylmaleimide redu 57.2 1.4E+02 0.0031 26.5 14.2 94 83-179 227-320 (362)
91 cd07940 DRE_TIM_IPMS 2-isoprop 57.1 91 0.002 26.3 8.7 135 107-249 22-197 (268)
92 cd00423 Pterin_binding Pterin 57.0 1.2E+02 0.0026 25.5 10.1 103 101-209 21-129 (258)
93 PRK06294 coproporphyrinogen II 56.6 1E+02 0.0022 27.5 9.2 61 101-163 167-244 (370)
94 cd02801 DUS_like_FMN Dihydrour 55.1 1.1E+02 0.0024 24.7 9.4 134 36-181 65-214 (231)
95 cd08579 GDPD_memb_like Glycero 54.4 1.1E+02 0.0025 24.6 13.9 70 138-207 112-197 (220)
96 PLN00191 enolase 54.4 1.1E+02 0.0024 28.2 9.2 96 102-206 296-394 (457)
97 PF00682 HMGL-like: HMGL-like 54.0 71 0.0015 26.2 7.4 97 101-203 11-124 (237)
98 PF05368 NmrA: NmrA-like famil 53.7 96 0.0021 25.1 8.1 85 121-213 22-107 (233)
99 PTZ00413 lipoate synthase; Pro 53.7 1.7E+02 0.0037 26.4 10.9 160 34-211 176-373 (398)
100 COG1797 CobB Cobyrinic acid a, 53.1 1.7E+02 0.0037 26.9 9.9 68 135-215 199-286 (451)
101 PLN02389 biotin synthase 52.8 1.7E+02 0.0038 26.2 10.8 101 35-151 116-227 (379)
102 COG3623 SgaU Putative L-xylulo 52.4 78 0.0017 26.5 7.0 76 12-89 65-156 (287)
103 TIGR00737 nifR3_yhdG putative 52.1 1.6E+02 0.0034 25.5 11.9 134 36-181 73-223 (319)
104 COG4464 CapC Capsular polysacc 51.8 48 0.001 27.4 5.6 42 34-75 16-60 (254)
105 cd07943 DRE_TIM_HOA 4-hydroxy- 51.7 1.4E+02 0.0031 25.0 15.2 24 35-58 19-42 (263)
106 PRK09427 bifunctional indole-3 51.6 46 0.001 30.7 6.3 65 114-182 273-338 (454)
107 PRK14459 ribosomal RNA large s 51.5 1.6E+02 0.0034 26.5 9.4 89 123-211 240-359 (373)
108 TIGR01927 menC_gamma/gm+ o-suc 51.4 1.4E+02 0.003 25.8 9.0 73 141-213 196-270 (307)
109 cd02810 DHOD_DHPD_FMN Dihydroo 51.4 1.5E+02 0.0033 25.1 11.8 132 36-181 109-273 (289)
110 COG0502 BioB Biotin synthase a 51.1 98 0.0021 27.3 7.9 133 35-186 84-233 (335)
111 cd03329 MR_like_4 Mandelate ra 51.0 1.8E+02 0.0039 25.8 14.8 152 36-207 143-299 (368)
112 PLN02746 hydroxymethylglutaryl 50.2 44 0.00096 29.6 5.7 103 101-206 65-181 (347)
113 COG2089 SpsE Sialic acid synth 50.1 1.8E+02 0.0039 25.6 10.8 118 35-170 87-224 (347)
114 PRK14465 ribosomal RNA large s 49.9 1.6E+02 0.0035 26.1 9.2 88 124-211 215-329 (342)
115 cd03327 MR_like_2 Mandelate ra 49.5 1.8E+02 0.0039 25.5 14.6 153 36-207 120-280 (341)
116 TIGR02090 LEU1_arch isopropylm 49.3 1.8E+02 0.004 25.8 9.6 25 35-59 19-43 (363)
117 TIGR02534 mucon_cyclo muconate 48.4 2E+02 0.0042 25.5 14.5 83 123-209 214-298 (368)
118 PRK09058 coproporphyrinogen II 48.4 1.5E+02 0.0033 27.1 9.2 28 101-129 227-254 (449)
119 COG2109 BtuR ATP:corrinoid ade 47.9 1.5E+02 0.0032 24.0 8.0 81 49-131 27-132 (198)
120 PTZ00081 enolase; Provisional 47.7 2.1E+02 0.0046 26.3 9.9 96 101-205 281-381 (439)
121 PRK05414 urocanate hydratase; 47.6 65 0.0014 30.1 6.4 114 44-171 118-254 (556)
122 PRK07094 biotin synthase; Prov 47.2 1.3E+02 0.0029 25.9 8.3 115 36-170 71-202 (323)
123 PRK14466 ribosomal RNA large s 46.5 1.3E+02 0.0027 26.8 8.0 94 124-217 210-337 (345)
124 cd07944 DRE_TIM_HOA_like 4-hyd 46.5 1.8E+02 0.0039 24.6 15.6 23 36-58 18-40 (266)
125 cd07944 DRE_TIM_HOA_like 4-hyd 46.5 1.8E+02 0.0039 24.6 9.4 104 100-206 16-128 (266)
126 TIGR01228 hutU urocanate hydra 46.4 67 0.0015 29.8 6.3 114 44-171 109-245 (545)
127 cd08570 GDPD_YPL206cp_fungi Gl 46.1 1.6E+02 0.0036 24.0 13.5 25 36-60 11-35 (234)
128 PRK00507 deoxyribose-phosphate 45.9 81 0.0018 26.0 6.4 76 35-121 133-209 (221)
129 PRK00077 eno enolase; Provisio 45.9 2.4E+02 0.0051 25.8 10.8 96 101-205 261-361 (425)
130 PRK14453 chloramphenicol/florf 45.7 2.2E+02 0.0047 25.3 10.0 92 120-211 203-330 (347)
131 PRK04452 acetyl-CoA decarbonyl 45.4 1.3E+02 0.0028 26.5 7.7 92 115-209 86-184 (319)
132 COG0145 HyuA N-methylhydantoin 45.3 2.4E+02 0.0052 27.6 10.2 97 34-132 135-243 (674)
133 TIGR00126 deoC deoxyribose-pho 45.2 1.7E+02 0.0037 23.9 10.1 134 32-180 12-152 (211)
134 cd07939 DRE_TIM_NifV Streptomy 45.1 1.8E+02 0.004 24.3 9.6 98 107-211 22-134 (259)
135 COG1902 NemA NADH:flavin oxido 44.8 2.3E+02 0.005 25.3 10.7 137 33-177 137-315 (363)
136 PRK09061 D-glutamate deacylase 44.7 2.1E+02 0.0046 26.7 9.7 110 39-158 170-283 (509)
137 TIGR02370 pyl_corrinoid methyl 44.5 1.6E+02 0.0036 23.5 10.6 149 36-201 10-164 (197)
138 PRK12331 oxaloacetate decarbox 44.3 1.5E+02 0.0033 27.3 8.5 103 101-205 23-141 (448)
139 PRK08195 4-hyroxy-2-oxovalerat 44.1 2.3E+02 0.0049 25.0 16.9 24 35-58 22-45 (337)
140 PF14606 Lipase_GDSL_3: GDSL-l 44.1 1.3E+02 0.0028 24.0 7.0 109 14-131 33-146 (178)
141 TIGR00048 radical SAM enzyme, 44.0 1.1E+02 0.0024 27.2 7.3 94 124-217 218-345 (355)
142 smart00642 Aamy Alpha-amylase 43.9 35 0.00076 26.7 3.8 22 190-211 73-94 (166)
143 cd03174 DRE_TIM_metallolyase D 43.9 1.8E+02 0.004 24.0 14.2 25 36-60 17-41 (265)
144 PF00697 PRAI: N-(5'phosphorib 43.8 67 0.0014 25.8 5.5 68 112-183 13-81 (197)
145 TIGR03217 4OH_2_O_val_ald 4-hy 43.4 2.3E+02 0.005 24.9 16.4 24 35-58 21-44 (333)
146 COG3589 Uncharacterized conser 43.0 2.3E+02 0.005 25.1 8.8 183 35-239 13-209 (360)
147 COG0218 Predicted GTPase [Gene 42.9 1.8E+02 0.004 23.6 9.0 100 38-149 91-198 (200)
148 COG0135 TrpF Phosphoribosylant 42.6 74 0.0016 26.0 5.5 101 36-162 11-112 (208)
149 COG1387 HIS2 Histidinol phosph 42.0 2E+02 0.0044 23.8 9.7 152 40-204 18-190 (237)
150 TIGR03822 AblA_like_2 lysine-2 41.9 2.4E+02 0.0051 24.6 12.3 122 36-170 120-252 (321)
151 cd08568 GDPD_TmGDE_like Glycer 41.8 1.9E+02 0.0041 23.5 13.3 22 37-58 13-34 (226)
152 cd00248 Mth938-like Mth938-lik 41.6 88 0.0019 22.6 5.3 52 157-208 36-87 (109)
153 PF13407 Peripla_BP_4: Peripla 40.6 2E+02 0.0043 23.3 8.6 50 104-159 14-63 (257)
154 COG2256 MGS1 ATPase related to 40.4 1.7E+02 0.0037 26.7 7.8 106 42-163 37-144 (436)
155 cd04742 NPD_FabD 2-Nitropropan 40.2 1.3E+02 0.0029 27.4 7.3 88 114-208 7-103 (418)
156 TIGR00742 yjbN tRNA dihydrouri 40.1 2.5E+02 0.0055 24.5 11.7 133 36-179 65-222 (318)
157 TIGR02660 nifV_homocitr homoci 39.9 2.5E+02 0.0055 24.9 9.0 97 100-204 19-130 (365)
158 cd02932 OYE_YqiM_FMN Old yello 39.5 2.6E+02 0.0056 24.4 12.3 131 41-179 157-319 (336)
159 cd07937 DRE_TIM_PC_TC_5S Pyruv 39.3 2.4E+02 0.0052 23.9 16.0 26 34-59 17-42 (275)
160 PRK14462 ribosomal RNA large s 39.0 2.8E+02 0.0061 24.7 9.7 86 126-211 225-338 (356)
161 PF01904 DUF72: Protein of unk 39.0 2.2E+02 0.0048 23.4 11.7 129 52-206 19-148 (230)
162 COG2873 MET17 O-acetylhomoseri 38.8 3E+02 0.0065 24.9 12.5 63 40-120 66-128 (426)
163 PRK07535 methyltetrahydrofolat 38.7 2.4E+02 0.0052 23.8 9.6 26 136-161 173-200 (261)
164 PF01118 Semialdhyde_dh: Semia 38.7 46 0.001 24.2 3.6 27 36-62 75-101 (121)
165 PF04481 DUF561: Protein of un 38.6 2.3E+02 0.005 23.5 10.2 103 36-151 25-146 (242)
166 PRK13523 NADPH dehydrogenase N 38.5 2.8E+02 0.006 24.4 11.4 41 139-179 263-304 (337)
167 COG2896 MoaA Molybdenum cofact 38.4 2.8E+02 0.006 24.4 11.2 119 34-171 42-175 (322)
168 COG4992 ArgD Ornithine/acetylo 38.4 1.8E+02 0.004 26.4 7.7 48 162-209 174-227 (404)
169 TIGR01060 eno phosphopyruvate 38.2 3.1E+02 0.0068 25.0 10.6 82 122-207 278-365 (425)
170 cd02803 OYE_like_FMN_family Ol 38.0 2.6E+02 0.0057 24.0 11.7 94 79-179 206-310 (327)
171 PF07476 MAAL_C: Methylasparta 37.6 91 0.002 25.9 5.2 101 101-204 86-193 (248)
172 COG1104 NifS Cysteine sulfinat 37.5 1.1E+02 0.0023 27.6 6.2 77 138-216 103-187 (386)
173 COG2874 FlaH Predicted ATPases 37.2 1.8E+02 0.0039 24.2 6.9 146 9-168 20-178 (235)
174 PF01175 Urocanase: Urocanase; 36.8 1.1E+02 0.0024 28.6 6.1 125 43-181 107-257 (546)
175 PF00809 Pterin_bind: Pterin b 36.7 2.2E+02 0.0048 23.0 7.6 91 115-209 29-125 (210)
176 COG0042 tRNA-dihydrouridine sy 36.5 2.9E+02 0.0064 24.1 9.9 133 36-179 77-227 (323)
177 PRK12928 lipoyl synthase; Prov 36.4 2.8E+02 0.006 23.9 9.3 162 34-209 86-280 (290)
178 PRK07328 histidinol-phosphatas 36.3 2.6E+02 0.0056 23.5 14.2 22 40-61 20-41 (269)
179 cd00740 MeTr MeTr subgroup of 36.0 2.6E+02 0.0057 23.5 10.8 106 101-212 23-131 (252)
180 PRK14457 ribosomal RNA large s 36.0 3.1E+02 0.0067 24.3 12.3 106 106-211 196-330 (345)
181 PRK05588 histidinol-phosphatas 35.7 2.6E+02 0.0056 23.2 14.1 103 39-156 17-143 (255)
182 PRK00208 thiG thiazole synthas 35.3 2.8E+02 0.006 23.5 15.4 105 100-206 72-181 (250)
183 PF01207 Dus: Dihydrouridine s 35.2 1.7E+02 0.0037 25.3 7.0 133 36-179 64-212 (309)
184 KOG2264 Exostosin EXT1L [Signa 34.8 1.3E+02 0.0028 28.6 6.3 55 64-133 632-688 (907)
185 PRK06015 keto-hydroxyglutarate 34.7 1.3E+02 0.0028 24.5 5.8 59 139-204 42-101 (201)
186 cd00739 DHPS DHPS subgroup of 34.5 2.8E+02 0.0061 23.3 8.7 115 42-161 87-209 (257)
187 TIGR00676 fadh2 5,10-methylene 34.4 2.9E+02 0.0062 23.4 11.9 157 38-214 15-193 (272)
188 cd02070 corrinoid_protein_B12- 34.4 2.4E+02 0.0052 22.5 11.3 149 36-201 9-162 (201)
189 TIGR02026 BchE magnesium-proto 34.3 3.9E+02 0.0084 24.9 10.6 101 101-205 222-341 (497)
190 cd00945 Aldolase_Class_I Class 34.1 2.2E+02 0.0048 22.0 8.8 95 36-149 11-109 (201)
191 COG2022 ThiG Uncharacterized e 34.1 1.6E+02 0.0035 24.7 6.2 54 100-153 79-133 (262)
192 PRK09389 (R)-citramalate synth 33.8 3.2E+02 0.0068 25.5 8.9 25 35-59 21-45 (488)
193 PRK14041 oxaloacetate decarbox 33.7 2.2E+02 0.0047 26.5 7.7 99 101-204 22-139 (467)
194 PRK09249 coproporphyrinogen II 32.9 1.3E+02 0.0029 27.5 6.3 16 201-216 317-332 (453)
195 TIGR02814 pfaD_fam PfaD family 32.9 2E+02 0.0043 26.5 7.2 67 141-208 34-108 (444)
196 COG0274 DeoC Deoxyribose-phosp 32.6 2.9E+02 0.0063 23.0 8.3 73 35-121 137-213 (228)
197 PF00072 Response_reg: Respons 32.4 1.6E+02 0.0035 20.0 5.6 63 112-177 34-98 (112)
198 TIGR01428 HAD_type_II 2-haloal 32.0 1.2E+02 0.0025 23.9 5.2 64 106-171 61-128 (198)
199 cd04747 OYE_like_5_FMN Old yel 32.0 3.7E+02 0.008 24.0 13.1 141 34-179 133-327 (361)
200 PRK11815 tRNA-dihydrouridine s 31.9 3.5E+02 0.0076 23.7 11.0 133 36-179 75-232 (333)
201 PF00724 Oxidored_FMN: NADH:fl 31.9 3.1E+02 0.0067 24.0 8.3 140 36-179 140-320 (341)
202 cd04734 OYE_like_3_FMN Old yel 31.4 3.6E+02 0.0079 23.7 10.8 101 42-159 145-250 (343)
203 PLN02775 Probable dihydrodipic 31.4 3.4E+02 0.0073 23.4 8.0 58 110-171 68-125 (286)
204 PRK14456 ribosomal RNA large s 31.4 3.7E+02 0.0079 24.1 8.6 77 135-211 260-353 (368)
205 COG4626 Phage terminase-like p 31.3 2.3E+02 0.0049 26.9 7.4 78 133-210 409-486 (546)
206 TIGR00538 hemN oxygen-independ 31.3 2.6E+02 0.0056 25.7 7.9 61 101-163 215-291 (455)
207 cd03326 MR_like_1 Mandelate ra 31.2 3.9E+02 0.0084 24.0 12.5 148 36-202 160-313 (385)
208 cd08567 GDPD_SpGDE_like Glycer 31.2 2.8E+02 0.006 22.9 7.6 19 190-208 221-239 (263)
209 PRK15440 L-rhamnonate dehydrat 31.2 1.9E+02 0.0041 26.1 6.8 68 139-206 247-318 (394)
210 TIGR01496 DHPS dihydropteroate 31.2 3.2E+02 0.0069 23.0 10.0 100 101-207 20-125 (257)
211 PRK08255 salicylyl-CoA 5-hydro 31.1 5.3E+02 0.012 25.5 13.5 150 42-202 555-737 (765)
212 PRK05628 coproporphyrinogen II 31.0 3.6E+02 0.0077 23.9 8.6 113 41-161 108-247 (375)
213 TIGR01182 eda Entner-Doudoroff 30.9 1.8E+02 0.004 23.6 6.1 80 110-205 25-106 (204)
214 COG2355 Zn-dependent dipeptida 30.7 1.1E+02 0.0023 26.9 4.9 27 131-158 102-128 (313)
215 cd08613 GDPD_GDE4_like_1 Glyce 30.6 3.7E+02 0.008 23.5 10.4 46 175-220 237-284 (309)
216 COG3215 PilZ Tfp pilus assembl 30.6 2.1E+02 0.0045 20.7 5.4 79 36-116 18-106 (117)
217 cd01320 ADA Adenosine deaminas 30.5 2.7E+02 0.0059 23.9 7.6 105 101-206 66-192 (325)
218 PF01791 DeoC: DeoC/LacD famil 30.5 2.8E+02 0.006 22.8 7.3 129 39-182 20-168 (236)
219 COG1121 ZnuC ABC-type Mn/Zn tr 30.4 2E+02 0.0043 24.3 6.4 60 107-168 117-205 (254)
220 PRK12677 xylose isomerase; Pro 30.3 3.2E+02 0.007 24.5 8.1 41 18-58 6-51 (384)
221 cd04728 ThiG Thiazole synthase 29.9 3.4E+02 0.0074 22.9 15.0 105 100-206 72-181 (248)
222 cd08583 PI-PLCc_GDPD_SF_unchar 29.9 3.1E+02 0.0067 22.4 10.6 23 36-58 13-35 (237)
223 cd03324 rTSbeta_L-fuconate_deh 29.6 4.3E+02 0.0094 24.0 14.5 152 36-207 196-352 (415)
224 PRK01313 rnpA ribonuclease P; 29.4 2.4E+02 0.0053 21.1 6.9 62 78-148 47-113 (129)
225 cd05560 Xcc1710_like Xcc1710_l 29.4 1.8E+02 0.0038 21.0 5.2 51 157-208 37-87 (109)
226 TIGR03822 AblA_like_2 lysine-2 29.3 3.8E+02 0.0083 23.3 11.2 90 124-213 139-240 (321)
227 cd08606 GDPD_YPL110cp_fungi Gl 28.9 3.6E+02 0.0077 22.8 11.9 30 142-171 155-184 (286)
228 PRK14463 ribosomal RNA large s 28.6 4.2E+02 0.009 23.5 9.2 94 125-218 211-338 (349)
229 cd07938 DRE_TIM_HMGL 3-hydroxy 28.5 3.7E+02 0.008 22.8 13.8 24 36-59 18-41 (274)
230 PF02679 ComA: (2R)-phospho-3- 28.2 84 0.0018 26.4 3.8 98 107-205 24-131 (244)
231 COG3737 Uncharacterized conser 28.1 1.3E+02 0.0029 22.3 4.3 49 160-208 55-104 (127)
232 COG0052 RpsB Ribosomal protein 27.9 3.7E+02 0.0081 22.7 8.3 132 50-207 36-186 (252)
233 PF07994 NAD_binding_5: Myo-in 27.8 4E+02 0.0087 23.1 8.2 96 102-205 130-230 (295)
234 TIGR00973 leuA_bact 2-isopropy 27.7 5.1E+02 0.011 24.2 12.7 24 36-59 21-44 (494)
235 PRK13011 formyltetrahydrofolat 27.6 3.9E+02 0.0086 22.9 13.5 141 40-207 21-172 (286)
236 PF00388 PI-PLC-X: Phosphatidy 27.3 49 0.0011 25.0 2.1 20 42-61 30-49 (146)
237 cd08580 GDPD_Rv2277c_like Glyc 27.2 3.8E+02 0.0083 22.6 12.0 22 36-57 13-34 (263)
238 COG1854 LuxS LuxS protein invo 27.2 36 0.00078 26.4 1.3 56 15-73 75-130 (161)
239 TIGR03849 arch_ComA phosphosul 27.1 2.1E+02 0.0046 23.9 5.9 97 108-205 12-118 (237)
240 cd08563 GDPD_TtGDE_like Glycer 27.1 3.4E+02 0.0074 22.0 14.1 23 36-58 13-35 (230)
241 PF04430 DUF498: Protein of un 27.0 1.2E+02 0.0026 21.8 4.0 51 158-208 37-88 (110)
242 smart00052 EAL Putative diguan 27.0 3.3E+02 0.0071 21.7 7.8 100 104-207 99-210 (241)
243 PRK15108 biotin synthase; Prov 26.9 4.4E+02 0.0096 23.2 11.0 114 35-163 76-201 (345)
244 PRK09282 pyruvate carboxylase 26.8 2.6E+02 0.0057 26.8 7.2 103 101-204 23-140 (592)
245 cd00668 Ile_Leu_Val_MetRS_core 26.8 1E+02 0.0022 26.6 4.2 49 103-154 81-131 (312)
246 PRK08776 cystathionine gamma-s 26.8 4.7E+02 0.01 23.5 10.5 87 123-213 100-188 (405)
247 PLN02666 5-oxoprolinase 26.7 7E+02 0.015 26.6 10.6 99 34-136 172-283 (1275)
248 PRK11840 bifunctional sulfur c 26.6 4.5E+02 0.0097 23.2 12.4 73 100-173 146-219 (326)
249 PRK05339 PEP synthetase regula 26.5 2E+02 0.0043 24.6 5.7 73 38-126 16-91 (269)
250 PF09391 DUF2000: Protein of u 26.3 1.4E+02 0.0031 22.4 4.4 48 36-83 62-109 (133)
251 PF01081 Aldolase: KDPG and KH 26.3 1.4E+02 0.0031 24.1 4.7 59 140-205 47-106 (196)
252 TIGR02090 LEU1_arch isopropylm 26.1 4.7E+02 0.01 23.2 8.7 97 100-204 18-129 (363)
253 cd05125 Mth938_2P1-like Mth938 25.9 2.2E+02 0.0047 20.8 5.2 50 159-208 39-89 (114)
254 PRK03995 hypothetical protein; 25.8 2.5E+02 0.0054 23.9 6.3 81 16-121 181-264 (267)
255 COG4130 Predicted sugar epimer 25.7 1.8E+02 0.0039 24.2 5.0 57 161-217 50-113 (272)
256 PF10171 DUF2366: Uncharacteri 25.6 1.6E+02 0.0035 23.3 4.7 39 122-160 78-116 (173)
257 CHL00162 thiG thiamin biosynth 25.5 4.2E+02 0.0092 22.5 8.9 70 100-170 80-156 (267)
258 cd08573 GDPD_GDE1 Glycerophosp 25.5 4E+02 0.0087 22.2 13.3 25 36-60 11-35 (258)
259 TIGR03278 methan_mark_10 putat 25.2 5E+02 0.011 23.6 8.4 116 37-161 88-206 (404)
260 smart00148 PLCXc Phospholipase 25.2 61 0.0013 24.4 2.2 21 41-61 31-51 (135)
261 cd07945 DRE_TIM_CMS Leptospira 25.1 4.3E+02 0.0094 22.5 10.3 113 102-216 109-232 (280)
262 TIGR01278 DPOR_BchB light-inde 25.1 5.7E+02 0.012 23.9 10.0 132 66-210 69-243 (511)
263 COG2355 Zn-dependent dipeptida 25.0 4.7E+02 0.01 22.9 8.3 106 39-159 150-260 (313)
264 PRK01222 N-(5'-phosphoribosyl) 24.7 3E+02 0.0065 22.3 6.4 40 114-160 73-112 (210)
265 cd01297 D-aminoacylase D-amino 24.6 5.1E+02 0.011 23.2 11.0 122 38-170 167-297 (415)
266 cd02931 ER_like_FMN Enoate red 24.5 5.1E+02 0.011 23.2 13.6 39 141-179 295-334 (382)
267 PRK08446 coproporphyrinogen II 24.4 1.7E+02 0.0038 25.7 5.3 60 101-162 162-231 (350)
268 PRK03459 rnpA ribonuclease P; 24.4 3E+02 0.0064 20.3 6.9 63 78-149 48-114 (122)
269 PRK09536 btuD corrinoid ABC tr 24.3 2.4E+02 0.0051 25.6 6.2 74 139-212 279-352 (402)
270 cd04733 OYE_like_2_FMN Old yel 24.0 4.9E+02 0.011 22.7 13.9 18 40-57 151-168 (338)
271 PRK11858 aksA trans-homoaconit 24.0 5.2E+02 0.011 23.1 9.6 98 107-211 28-140 (378)
272 PRK09358 adenosine deaminase; 24.0 4.8E+02 0.01 22.6 12.4 99 103-204 148-247 (340)
273 PF13653 GDPD_2: Glycerophosph 23.9 70 0.0015 17.4 1.7 18 41-58 10-27 (30)
274 PRK09856 fructoselysine 3-epim 23.8 2.3E+02 0.005 23.5 5.9 53 161-213 14-73 (275)
275 TIGR01430 aden_deam adenosine 23.6 4.8E+02 0.01 22.4 14.7 99 102-204 138-237 (324)
276 PRK00499 rnpA ribonuclease P; 23.3 2.9E+02 0.0063 19.9 6.9 63 78-149 38-104 (114)
277 PF01890 CbiG_C: Cobalamin syn 23.3 2.8E+02 0.006 20.4 5.4 63 100-169 11-73 (121)
278 PF05049 IIGP: Interferon-indu 23.3 87 0.0019 28.1 3.2 69 65-133 128-202 (376)
279 PF04414 tRNA_deacylase: D-ami 23.2 2E+02 0.0044 23.6 5.0 80 16-120 130-210 (213)
280 PRK07379 coproporphyrinogen II 23.2 2E+02 0.0043 25.9 5.5 20 142-162 236-255 (400)
281 PRK12581 oxaloacetate decarbox 23.0 6.2E+02 0.013 23.6 14.5 150 36-201 103-263 (468)
282 KOG4518 Hydroxypyruvate isomer 23.0 4.3E+02 0.0093 21.7 7.4 81 40-126 18-107 (264)
283 KOG4175 Tryptophan synthase al 23.0 4.3E+02 0.0093 21.7 7.7 92 13-118 92-202 (268)
284 cd06563 GH20_chitobiase-like T 23.0 5.1E+02 0.011 22.9 8.0 35 34-70 82-116 (357)
285 TIGR01290 nifB nitrogenase cof 22.9 6E+02 0.013 23.3 10.9 82 100-184 59-144 (442)
286 TIGR03278 methan_mark_10 putat 22.8 5.8E+02 0.013 23.2 10.7 20 191-210 187-206 (404)
287 cd03313 enolase Enolase: Enola 22.6 5.8E+02 0.013 23.1 10.6 96 101-205 261-361 (408)
288 cd08564 GDPD_GsGDE_like Glycer 22.5 4.6E+02 0.0099 21.9 12.9 25 36-60 18-42 (265)
289 PF08671 SinI: Anti-repressor 22.5 1E+02 0.0023 16.8 2.2 16 38-53 3-18 (30)
290 TIGR00221 nagA N-acetylglucosa 22.4 5.7E+02 0.012 22.9 10.0 33 139-171 179-211 (380)
291 cd08590 PI-PLCc_Rv2075c_like C 22.4 3E+02 0.0065 23.4 6.2 19 43-61 46-64 (267)
292 cd03328 MR_like_3 Mandelate ra 22.4 5.4E+02 0.012 22.6 15.7 151 36-207 138-293 (352)
293 cd07938 DRE_TIM_HMGL 3-hydroxy 22.3 3.4E+02 0.0074 23.0 6.6 94 106-204 21-131 (274)
294 cd03770 SR_TndX_transposase Se 22.3 1.7E+02 0.0037 21.9 4.2 51 107-157 54-105 (140)
295 TIGR01660 narH nitrate reducta 22.2 41 0.00088 31.0 0.9 53 150-202 264-317 (492)
296 PRK11267 biopolymer transport 22.2 2.6E+02 0.0057 21.0 5.3 54 101-159 81-134 (141)
297 PF05378 Hydant_A_N: Hydantoin 22.1 2E+02 0.0043 22.7 4.8 43 34-76 130-174 (176)
298 TIGR00789 flhB_rel flhB C-term 22.1 72 0.0016 21.9 1.9 38 190-229 30-67 (82)
299 KOG0173 20S proteasome, regula 22.0 80 0.0017 26.6 2.5 23 30-52 178-200 (271)
300 cd03320 OSBS o-Succinylbenzoat 21.9 4.7E+02 0.01 21.8 12.2 85 122-211 153-238 (263)
301 PRK02301 putative deoxyhypusin 21.9 5.5E+02 0.012 22.5 7.8 21 189-209 174-194 (316)
302 PRK08084 DNA replication initi 21.9 2.4E+02 0.0053 23.1 5.5 44 122-165 98-145 (235)
303 TIGR01163 rpe ribulose-phospha 21.9 4E+02 0.0087 21.0 9.5 98 101-202 8-106 (210)
304 COG3653 N-acyl-D-aspartate/D-g 21.9 6.5E+02 0.014 23.4 10.2 83 39-132 183-279 (579)
305 cd00885 cinA Competence-damage 21.8 1.6E+02 0.0034 23.1 4.1 47 40-90 21-68 (170)
306 cd04735 OYE_like_4_FMN Old yel 21.6 5.6E+02 0.012 22.6 10.6 24 34-57 133-163 (353)
307 PF07905 PucR: Purine cataboli 21.6 2.4E+02 0.0052 20.5 4.9 20 187-206 86-105 (123)
308 TIGR00433 bioB biotin syntheta 21.6 4.9E+02 0.011 21.9 8.0 145 36-192 63-217 (296)
309 cd00814 MetRS_core catalytic c 21.5 1.4E+02 0.0031 25.8 4.2 47 103-152 68-114 (319)
310 KOG0369 Pyruvate carboxylase [ 21.4 7.6E+02 0.016 24.5 8.9 150 38-214 43-198 (1176)
311 cd00812 LeuRS_core catalytic c 21.4 1.4E+02 0.0029 26.0 4.0 50 103-153 68-117 (314)
312 PLN02438 inositol-3-phosphate 21.4 6.9E+02 0.015 23.5 8.5 49 103-151 206-258 (510)
313 TIGR02631 xylA_Arthro xylose i 21.2 6E+02 0.013 22.8 10.0 41 18-58 7-52 (382)
314 PRK08195 4-hyroxy-2-oxovalerat 21.2 5.7E+02 0.012 22.5 11.8 106 99-206 20-134 (337)
315 PRK05718 keto-hydroxyglutarate 20.9 3.2E+02 0.007 22.3 5.9 53 35-89 24-76 (212)
316 COG1149 MinD superfamily P-loo 20.9 2.1E+02 0.0046 24.6 4.8 89 113-213 155-252 (284)
317 PRK03031 rnpA ribonuclease P; 20.8 3.5E+02 0.0075 19.8 6.9 49 101-149 62-114 (122)
318 PRK13361 molybdenum cofactor b 20.8 5.6E+02 0.012 22.2 15.1 119 34-170 44-177 (329)
319 cd08620 PI-PLCXDc_like_1 Catal 20.7 5E+02 0.011 22.3 7.2 18 44-61 36-53 (281)
320 PF00113 Enolase_C: Enolase, C 20.7 5.6E+02 0.012 22.2 10.6 101 101-208 133-236 (295)
321 cd01974 Nitrogenase_MoFe_beta 20.6 6.5E+02 0.014 22.9 10.2 108 58-177 64-191 (435)
322 PF13714 PEP_mutase: Phosphoen 20.6 3.3E+02 0.0072 22.7 6.0 161 35-210 52-222 (238)
323 cd08612 GDPD_GDE4 Glycerophosp 20.6 5.4E+02 0.012 22.0 14.3 24 36-59 39-62 (300)
324 COG1131 CcmA ABC-type multidru 20.5 2.9E+02 0.0063 23.6 5.8 61 106-169 141-204 (293)
325 TIGR02660 nifV_homocitr homoci 20.4 6.1E+02 0.013 22.5 13.4 24 35-58 20-43 (365)
326 cd02742 GH20_hexosaminidase Be 20.3 5.1E+02 0.011 22.2 7.3 35 34-70 68-102 (303)
327 PRK11024 colicin uptake protei 20.3 2.8E+02 0.006 20.8 5.1 52 102-158 86-137 (141)
328 TIGR01108 oadA oxaloacetate de 20.2 81 0.0018 30.1 2.5 100 107-206 23-137 (582)
329 PF04748 Polysacc_deac_2: Dive 20.2 94 0.002 25.4 2.6 103 35-157 71-182 (213)
330 PRK01903 rnpA ribonuclease P; 20.1 3.9E+02 0.0084 20.1 6.8 47 101-147 65-127 (133)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.7e-54 Score=374.97 Aligned_cols=215 Identities=44% Similarity=0.678 Sum_probs=196.8
Q ss_pred CcceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCC-CCCeE
Q 025658 5 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGM-RERVE 83 (249)
Q Consensus 5 ~~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~-r~~~~ 83 (249)
|++++||++|++||+||||||.+|+.+ ...+.+++.++|++|+++||||||||+.||.|.||+++|++|+..+ |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~-~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDT-DDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCC-CchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 788999999999999999999998642 2334557888999999999999999999999999999999999844 89999
Q ss_pred EEeecCcccCC-CCC-cCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCccc
Q 025658 84 LATKFGISFAD-GKR-EIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEAS 161 (249)
Q Consensus 84 i~tK~~~~~~~-~~~-~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 161 (249)
|+||++....+ ... ..+.++++|+++++.||+|||+||||+|++||||...+.++++++|.+|+++|+||+||+||++
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 99999977642 212 2567999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc-CCeeEEeeccCccCcCchhhHHHHHHHcCCeEEEcccCccccCCCCCCC
Q 025658 162 ASTIRRAHAV-HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKL 220 (249)
Q Consensus 162 ~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~l~~~~~~ 220 (249)
++++.++++. .+++++|.+||++++..+.+++++|+++||++++||||++|+|++++..
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~ 219 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLP 219 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCC
Confidence 9999999998 6999999999999988787899999999999999999999999999876
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=6.3e-53 Score=359.57 Aligned_cols=223 Identities=47% Similarity=0.749 Sum_probs=201.6
Q ss_pred CCcceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcC--CCCCC
Q 025658 4 AVKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG--GMRER 81 (249)
Q Consensus 4 ~~~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~--~~r~~ 81 (249)
.|+++.+|++|++||++|||+|.+.. |+...++++++++++.|+++|+||||||++||+|.||.++|++|++ .+|++
T Consensus 11 ~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~~ 89 (336)
T KOG1575|consen 11 GMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRDK 89 (336)
T ss_pred cceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCCc
Confidence 38899999999999999999974433 5555788999999999999999999999999999999999999998 67999
Q ss_pred eEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCccc
Q 025658 82 VELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEAS 161 (249)
Q Consensus 82 ~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 161 (249)
++|+||++... .+......+...+.+.++.|++|||++|||++++||+|+..++++++++|.+++++|+|++||+|+++
T Consensus 90 vviaTK~~~~~-~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe~s 168 (336)
T KOG1575|consen 90 VVIATKFGFDY-GGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSEWS 168 (336)
T ss_pred EEEEEEEeccC-CCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEeccCC
Confidence 99999999776 22224567889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCC--eeEEeeccCccCcC-chhhHHHHHHHcCCeEEEcccCccccCCCCCCCCCCCChhh
Q 025658 162 ASTIRRAHAVHP--ITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKED 228 (249)
Q Consensus 162 ~~~l~~~~~~~~--~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~ 228 (249)
++++.+++...+ +.++|++||+++|+ .+.++++.|++.||++++||||++|+||++++..++.+..+
T Consensus 169 a~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~ 238 (336)
T KOG1575|consen 169 AEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGD 238 (336)
T ss_pred HHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccccccccccc
Confidence 999999998876 99999999999998 55569999999999999999999999999998766555443
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=9.4e-50 Score=334.14 Aligned_cols=214 Identities=32% Similarity=0.448 Sum_probs=181.1
Q ss_pred CcceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcC--CCCCCe
Q 025658 5 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG--GMRERV 82 (249)
Q Consensus 5 ~~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~--~~r~~~ 82 (249)
+.+.++ .+|.+||.||||||++++ .+.+.+++.+|++.|+|+||||..|| ||+.+|++|++ ++|+++
T Consensus 3 ~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Reel 71 (280)
T COG0656 3 KTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREEL 71 (280)
T ss_pred Cceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHHe
Confidence 445667 568889999999998843 12388999999999999999999999 99999999998 889999
Q ss_pred EEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCC--CCHHHHHHHHHHHHHcCcccEEEcCcc
Q 025658 83 ELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR--VPIEVTIGELKKLVEEGKIKYIGLSEA 160 (249)
Q Consensus 83 ~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~ 160 (249)
||+||++.. ..+.+.+.+++++||+|||+||+|||++|||.+. ..+.++|++|++++++|+||+||||||
T Consensus 72 FittKvw~~--------~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF 143 (280)
T COG0656 72 FITTKVWPS--------DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNF 143 (280)
T ss_pred EEEeecCCc--------cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCC
Confidence 999999954 3578899999999999999999999999999763 337899999999999999999999999
Q ss_pred cHHHHHHHhhc--CCeeEEeeccCccCcCchhhHHHHHHHcCCeEEEcccCccccCCCCCCCCCCCChhhHhhhccchHH
Q 025658 161 SASTIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQVCKSTKQ 238 (249)
Q Consensus 161 ~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 238 (249)
+.++|+++++. ..|.++|++||++.+. .+++++|+++||.+++||||+.|.. ..+.+.-.+..+++..+++
T Consensus 144 ~~~~L~~l~~~~~~~p~~NQIe~hp~~~q--~el~~~~~~~gI~v~AysPL~~g~~-----l~~~~~l~~Ia~k~g~t~A 216 (280)
T COG0656 144 GVEHLEELLSLAKVKPAVNQIEYHPYLRQ--PELLPFCQRHGIAVEAYSPLAKGGK-----LLDNPVLAEIAKKYGKTPA 216 (280)
T ss_pred CHHHHHHHHHhcCCCCceEEEEeccCCCc--HHHHHHHHHcCCEEEEECCcccccc-----cccChHHHHHHHHhCCCHH
Confidence 99999999876 4589999999999995 4599999999999999999997552 1122334467777755666
Q ss_pred HHhccc
Q 025658 239 LLAFGM 244 (249)
Q Consensus 239 ~~~~~~ 244 (249)
++.+++
T Consensus 217 Qv~L~W 222 (280)
T COG0656 217 QVALRW 222 (280)
T ss_pred HHHHHH
Confidence 655433
No 4
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=5.1e-49 Score=345.96 Aligned_cols=213 Identities=28% Similarity=0.498 Sum_probs=185.3
Q ss_pred CCcceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCC--ChHHHHHHHHhcC---CC
Q 025658 4 AVKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGP--HTNEILLGKALKG---GM 78 (249)
Q Consensus 4 ~~~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g~se~~lg~~l~~---~~ 78 (249)
.|++++||++|++||+||||||+. +|...+.+++.++|++|+++|||+||||+.||+ |.+|+.+|++|++ .+
T Consensus 12 ~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~ 88 (346)
T PRK09912 12 QMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAY 88 (346)
T ss_pred CcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccCC
Confidence 599999999999999999999973 443445677899999999999999999999994 8999999999986 26
Q ss_pred CCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcC
Q 025658 79 RERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLS 158 (249)
Q Consensus 79 r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs 158 (249)
|++++|+||++....++......+++.+++++++||+|||+||||+|++|||++..+++++|++|++|+++|+|++||+|
T Consensus 89 Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iGvS 168 (346)
T PRK09912 89 RDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGIS 168 (346)
T ss_pred CCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEec
Confidence 99999999997531111111246799999999999999999999999999999888999999999999999999999999
Q ss_pred cccHHHHHHHhhc-----CCeeEEeeccCccCcCch-hhHHHHHHHcCCeEEEcccCccccCCCCCC
Q 025658 159 EASASTIRRAHAV-----HPITAVQLEWSLWSRDVE-AEIVPTCRELGIGIVAYSPLGRGFFSSGPK 219 (249)
Q Consensus 159 ~~~~~~l~~~~~~-----~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~l~~~~~ 219 (249)
||++++++++.+. .+++++|++||++++..+ .+++++|+++||++++|+||++|+|++++.
T Consensus 169 n~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~ 235 (346)
T PRK09912 169 SYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYL 235 (346)
T ss_pred CCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCC
Confidence 9999988765542 367899999999998644 479999999999999999999999999864
No 5
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=7.9e-49 Score=341.20 Aligned_cols=209 Identities=28% Similarity=0.426 Sum_probs=183.6
Q ss_pred ceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcC--CCCCCeEE
Q 025658 7 RIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG--GMRERVEL 84 (249)
Q Consensus 7 ~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~--~~r~~~~i 84 (249)
+|.||++|++||+||||||++ +|...+.+++.++|++|+++|||+||||+.||.|.||+++|++|++ .+|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 578999999999999999975 3434567889999999999999999999999999999999999985 36999999
Q ss_pred EeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHH
Q 025658 85 ATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASAST 164 (249)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 164 (249)
+||++.... .......+++.+++++++||+|||+||||+|++|||++..+++++|++|++|+++|+||+||+||++.++
T Consensus 78 aTK~~~~~~-~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~~ 156 (317)
T TIGR01293 78 TTKIFWGGK-AETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSME 156 (317)
T ss_pred EeeeccCCC-CCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHH
Confidence 999864211 0111246799999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHhhc------CCeeEEeeccCccCcCc-hhhHHHHHHHcCCeEEEcccCccccCCCCCC
Q 025658 165 IRRAHAV------HPITAVQLEWSLWSRDV-EAEIVPTCRELGIGIVAYSPLGRGFFSSGPK 219 (249)
Q Consensus 165 l~~~~~~------~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~l~~~~~ 219 (249)
++++... .+++++|++||++++.. +.+++++|+++||++++|+||++|+|++++.
T Consensus 157 l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~ 218 (317)
T TIGR01293 157 IMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYD 218 (317)
T ss_pred HHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCC
Confidence 8776432 46789999999999873 6689999999999999999999999999874
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=5.8e-48 Score=339.53 Aligned_cols=211 Identities=30% Similarity=0.421 Sum_probs=182.4
Q ss_pred CcceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcC-------CChHHHHHHHHhcC-
Q 025658 5 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYG-------PHTNEILLGKALKG- 76 (249)
Q Consensus 5 ~~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-------~g~se~~lg~~l~~- 76 (249)
|++++||++|++||+||||||++|+ ..+++++.+++++|+++|||+||||+.|| .|.||+.+|++|++
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 6789999999999999999998864 34678899999999999999999999998 48999999999985
Q ss_pred CCCCCeEEEeecCcccCC-CC---CcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCC-----------------CCC
Q 025658 77 GMRERVELATKFGISFAD-GK---REIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDT-----------------RVP 135 (249)
Q Consensus 77 ~~r~~~~i~tK~~~~~~~-~~---~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~-----------------~~~ 135 (249)
.+|++++|+||++..... +. .....+++.+++++++||+|||++|||+|++|||+. ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 468999999998632110 00 012468999999999999999999999999999964 246
Q ss_pred HHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhh------cCCeeEEeeccCccCcCchhhHHHHHHHcCCeEEEcccC
Q 025658 136 IEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHA------VHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPL 209 (249)
Q Consensus 136 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~------~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl 209 (249)
+.++|++|++|+++|+|++||+||++.+++.++.. ...+.++|++||++++..+.+++++|+++||++++|+||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 78999999999999999999999999998877643 135788999999999877678999999999999999999
Q ss_pred ccccCCCCCC
Q 025658 210 GRGFFSSGPK 219 (249)
Q Consensus 210 ~~G~l~~~~~ 219 (249)
++|+|++++.
T Consensus 237 ~~G~Ltg~~~ 246 (346)
T PRK10625 237 AFGTLTGKYL 246 (346)
T ss_pred cCeeccCCCC
Confidence 9999998864
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=6.9e-48 Score=334.97 Aligned_cols=206 Identities=31% Similarity=0.488 Sum_probs=178.5
Q ss_pred ceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcC--CCCCCeEE
Q 025658 7 RIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG--GMRERVEL 84 (249)
Q Consensus 7 ~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~--~~r~~~~i 84 (249)
||+||++|++||+||||||++|+.|+. .+.+++.+++++|+++|||+||||+.||.|.+|+.+|++|++ .+|++++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 588999999999999999999876653 466889999999999999999999999999999999999987 46999999
Q ss_pred EeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCC---CCHHHHHHHHHHHHHcCcccEEEcCccc
Q 025658 85 ATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR---VPIEVTIGELKKLVEEGKIKYIGLSEAS 161 (249)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~---~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 161 (249)
+||++.... + .+.+++.+++++++||+|||+||||+|++|||+.. .++.++|++|++|+++||||+||+||++
T Consensus 80 ~TK~~~~~~-~---~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~ 155 (314)
T PLN02587 80 STKCGRYGE-G---FDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLP 155 (314)
T ss_pred EeccccCCC-C---CCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 999984321 1 24689999999999999999999999999999743 3567899999999999999999999999
Q ss_pred HHHHHHHhhc---C--CeeEEeeccCccCcCchhhHHHHHHHcCCeEEEcccCccccCCCCC
Q 025658 162 ASTIRRAHAV---H--PITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGP 218 (249)
Q Consensus 162 ~~~l~~~~~~---~--~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~l~~~~ 218 (249)
+++++.+... . .+..+|+.||+.++.. .+++++|+++||++++|+||++|+|+++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~ 216 (314)
T PLN02587 156 LAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENG 216 (314)
T ss_pred HHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCC
Confidence 9888776542 2 3344578888877644 38999999999999999999999999874
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.4e-47 Score=328.63 Aligned_cols=210 Identities=43% Similarity=0.629 Sum_probs=190.1
Q ss_pred ceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCC-CCCeEEE
Q 025658 7 RIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGM-RERVELA 85 (249)
Q Consensus 7 ~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~-r~~~~i~ 85 (249)
+++||++|++||+||||||.++..| .+.+++.++++.|++.|||+||||+.||+|.+|+.+|++|++.+ |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 5789999999999999999986544 46688999999999999999999999999999999999999855 9999999
Q ss_pred eecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCC-HHHHHHHHHHHHHcCcccEEEcCcccHHH
Q 025658 86 TKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVP-IEVTIGELKKLVEEGKIKYIGLSEASAST 164 (249)
Q Consensus 86 tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 164 (249)
||++...... .+.+++.+++++++||++||++|||+|+||+|+.... ..++|++|++++++|+||+||+||++++.
T Consensus 78 tK~~~~~~~~---~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~ 154 (285)
T cd06660 78 TKVGPRPGDG---RDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQ 154 (285)
T ss_pred eeecCCCCCC---CCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHH
Confidence 9998653211 3468999999999999999999999999999987766 88999999999999999999999999999
Q ss_pred HHHHhhc--CCeeEEeeccCccCcCchhhHHHHHHHcCCeEEEcccCccccCCCCCCCCC
Q 025658 165 IRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVE 222 (249)
Q Consensus 165 l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~l~~~~~~~~ 222 (249)
+.++... .+|+++|++||++++....+++++|+++||++++|+||++|.+++++....
T Consensus 155 l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~ 214 (285)
T cd06660 155 LEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGA 214 (285)
T ss_pred HHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCC
Confidence 9999888 899999999999999766679999999999999999999999998765543
No 9
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1.2e-46 Score=315.55 Aligned_cols=219 Identities=28% Similarity=0.413 Sum_probs=188.5
Q ss_pred CCCCCcceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcC----
Q 025658 1 MAGAVKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG---- 76 (249)
Q Consensus 1 ~~~~~~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~---- 76 (249)
||... +.+| ++|.+||.||||||+. ++.++..+++.|++.|+|+||||..|+ +|+.+|++|++
T Consensus 1 M~~~~-~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~ 67 (300)
T KOG1577|consen 1 MSSKT-TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAE 67 (300)
T ss_pred CCccc-eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhh
Confidence 66665 7888 8999999999999873 457899999999999999999999999 99999999995
Q ss_pred --CCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCC----------------CCHHH
Q 025658 77 --GMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR----------------VPIEV 138 (249)
Q Consensus 77 --~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~----------------~~~~~ 138 (249)
++|+++||+||++.. ...++.++.++++||++||+||+|+|++|||-.. .++.+
T Consensus 68 ~~v~RediFiTSKlw~~--------~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~ 139 (300)
T KOG1577|consen 68 GGVKREDIFITSKLWPT--------DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIE 139 (300)
T ss_pred CCcchhhheeeeccCcc--------ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHH
Confidence 699999999999854 2678999999999999999999999999999543 34678
Q ss_pred HHHHHHHHHHcCcccEEEcCcccHHHHHHHhhc--CCeeEEeeccCccCcCchhhHHHHHHHcCCeEEEcccCccccCCC
Q 025658 139 TIGELKKLVEEGKIKYIGLSEASASTIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSS 216 (249)
Q Consensus 139 ~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~l~~ 216 (249)
+|++|+++++.|++|+||||||+..+|+++++. .+|.++|++++++.+ ..+++++|+++||.|.|||||+.+-- .
T Consensus 140 tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~--Q~~L~~fCk~~~I~v~AYSpLg~~~~-~ 216 (300)
T KOG1577|consen 140 TWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQ--QKKLVEFCKSKGIVVTAYSPLGSPGR-G 216 (300)
T ss_pred HHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcC--hHHHHHHHhhCCcEEEEecCCCCCCC-c
Confidence 999999999999999999999999999999876 678999999999877 46899999999999999999998765 1
Q ss_pred CCCCCCCCChhhHhhhccchHHHHhccc
Q 025658 217 GPKLVESFSKEDFRQVCKSTKQLLAFGM 244 (249)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (249)
. ....++.-.++.+++.++++++.+.+
T Consensus 217 ~-~ll~~~~l~~iA~K~~kt~aQIlLrw 243 (300)
T KOG1577|consen 217 S-DLLEDPVLKEIAKKYNKTPAQILLRW 243 (300)
T ss_pred c-ccccCHHHHHHHHHhCCCHHHHHHHH
Confidence 1 22333334577888877777766443
No 10
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=7.8e-46 Score=318.59 Aligned_cols=210 Identities=28% Similarity=0.449 Sum_probs=179.0
Q ss_pred CCCCCcceecCCCCcccCcceecccccCC--CCCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCC
Q 025658 1 MAGAVKRIKLGSQGLEVSAQGLGCMGMSA--FYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGM 78 (249)
Q Consensus 1 ~~~~~~~~~lg~~g~~vs~lglG~~~~g~--~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~ 78 (249)
||-.|...++.-+|++||+||||||++|+ .||...+++++.++++.|++.|||+||||+.||+|.+|+.+|++++. .
T Consensus 1 ~~~~~~~~~~~l~g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~ 79 (290)
T PRK10376 1 MSTIMSSGTFTLGGRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-Y 79 (290)
T ss_pred CcccccCCceecCCeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-C
Confidence 55555544444349999999999999985 36665577889999999999999999999999999999999999975 5
Q ss_pred CCCeEEEeecCcccCC-CCCcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCC-----CCCHHHHHHHHHHHHHcCcc
Q 025658 79 RERVELATKFGISFAD-GKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDT-----RVPIEVTIGELKKLVEEGKI 152 (249)
Q Consensus 79 r~~~~i~tK~~~~~~~-~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~-----~~~~~~~~~~l~~l~~~G~i 152 (249)
|++++|+||++..... ..+....+++.+++++++||+|||++|||+|++|+++. ..++.++|++|++|+++|||
T Consensus 80 R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gki 159 (290)
T PRK10376 80 PDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLV 159 (290)
T ss_pred CCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCce
Confidence 9999999999754311 11123568999999999999999999999999988521 23578999999999999999
Q ss_pred cEEEcCcccHHHHHHHhhcCCeeEEeeccCccCcCchhhHHHHHHHcCCeEEEcccCccc
Q 025658 153 KYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRG 212 (249)
Q Consensus 153 r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G 212 (249)
|+||+|||++++++++.+..+++++|++||++++.. .+++++|+++||++++|+||+++
T Consensus 160 r~iGvSn~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~ 218 (290)
T PRK10376 160 RHIGLSNVTPTQVAEARKIAEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGF 218 (290)
T ss_pred eEEEecCCCHHHHHHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCC
Confidence 999999999999999988888999999999998763 47999999999999999999743
No 11
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=4.8e-45 Score=312.62 Aligned_cols=200 Identities=35% Similarity=0.515 Sum_probs=174.6
Q ss_pred cceecccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcC--CCCCCeEEEeecCcccCCCC
Q 025658 19 AQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG--GMRERVELATKFGISFADGK 96 (249)
Q Consensus 19 ~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~--~~r~~~~i~tK~~~~~~~~~ 96 (249)
+||||||++|+. ..+.+++.++++.|++.|||+||||+.||+|.+|+.+|++|+. .+|++++|+||+. ....
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~---~~~~ 74 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVY---GDGK 74 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEE---SSSS
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccccccccccccccccc---cccc
Confidence 589999998642 5688999999999999999999999999888999999999998 8899999999992 1223
Q ss_pred CcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCC-HHHHHHHHHHHHHcCcccEEEcCcccHHHHHHH--hhcCC
Q 025658 97 REIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVP-IEVTIGELKKLVEEGKIKYIGLSEASASTIRRA--HAVHP 173 (249)
Q Consensus 97 ~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~--~~~~~ 173 (249)
.....+++.+++++++||++||++|||+|++|+|+.... ..++|++|++|+++|+||+||+|||+++.++++ ....+
T Consensus 75 ~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~ 154 (283)
T PF00248_consen 75 PEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIP 154 (283)
T ss_dssp TGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-
T ss_pred ccccccccccccccccccccccccchhccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccc
Confidence 335689999999999999999999999999999999888 999999999999999999999999999999999 55588
Q ss_pred eeEEeeccCccCcCchhhHHHHHHHcCCeEEEcccCccccCCCCCCCCCCC
Q 025658 174 ITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESF 224 (249)
Q Consensus 174 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~ 224 (249)
|+++|++||++++....+++++|+++||++++|+||++|+|++++.....+
T Consensus 155 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~ 205 (283)
T PF00248_consen 155 PDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPP 205 (283)
T ss_dssp ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTS
T ss_pred ccccccccccccccccccccccccccccccccccccccCccccccccCCCc
Confidence 999999999997777889999999999999999999999999988765443
No 12
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=5.7e-44 Score=303.63 Aligned_cols=180 Identities=26% Similarity=0.383 Sum_probs=161.3
Q ss_pred cccCcceecccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcC--CCCCCeEEEeecCccc
Q 025658 15 LEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG--GMRERVELATKFGISF 92 (249)
Q Consensus 15 ~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~--~~r~~~~i~tK~~~~~ 92 (249)
++||+||||||+++ .+++.+++++|++.|||+||||+.|| +|..+|++|++ .+|++++|+||++..
T Consensus 1 ~~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~- 68 (267)
T PRK11172 1 MSIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID- 68 (267)
T ss_pred CCCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC-
Confidence 36999999999762 36799999999999999999999999 79999999985 469999999998521
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCC--CCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhh
Q 025658 93 ADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR--VPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHA 170 (249)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 170 (249)
..+++.+++++++||+|||++|||+|++|||++. .+..++|++|++++++||||+||+|||+.++++++++
T Consensus 69 -------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~ 141 (267)
T PRK11172 69 -------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIA 141 (267)
T ss_pred -------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHH
Confidence 3578999999999999999999999999999763 5678999999999999999999999999999998876
Q ss_pred c---CCeeEEeeccCccCcCchhhHHHHHHHcCCeEEEcccCccccCC
Q 025658 171 V---HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFS 215 (249)
Q Consensus 171 ~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~l~ 215 (249)
. .+++++|++||++++. .+++++|+++||++++|+||++|.+.
T Consensus 142 ~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~ 187 (267)
T PRK11172 142 AVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVL 187 (267)
T ss_pred hcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCccc
Confidence 4 3689999999999873 58999999999999999999999764
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=4.1e-44 Score=307.69 Aligned_cols=191 Identities=22% Similarity=0.288 Sum_probs=168.1
Q ss_pred CcccCcceecccccCCC-------CCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEe
Q 025658 14 GLEVSAQGLGCMGMSAF-------YGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELAT 86 (249)
Q Consensus 14 g~~vs~lglG~~~~g~~-------~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~t 86 (249)
+++||+||||||++|+. |+ ..+++++.++|+.|+++|||+||||+.|| .||+.+|++|+...+++++++|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~-~~~~~ea~~~l~~A~~~Gin~~DTA~~YG--~SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRG-RTPEAEARDILNIAARAGLSVLDASGLFG--RAETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCC-CCCHHHHHHHHHHHHHcCCCEEecchhhh--hHHHHHhhhhccCCceEeeccc
Confidence 57899999999999853 33 35778999999999999999999999997 7999999999863345788888
Q ss_pred ecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCC-CCH-HHHHHHHHHHHHcCcccEEEcCcccHHH
Q 025658 87 KFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR-VPI-EVTIGELKKLVEEGKIKYIGLSEASAST 164 (249)
Q Consensus 87 K~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~-~~~-~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 164 (249)
|.. ..+++.+++++++||+|||+||||+|++|+|++. .+. .++|++|++|+++||||+||+||+++++
T Consensus 79 k~~----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~ 148 (292)
T PRK14863 79 VRA----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDD 148 (292)
T ss_pred ccc----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHH
Confidence 842 2468999999999999999999999999999763 333 5789999999999999999999999999
Q ss_pred HHHHhhcCCeeEEeeccCccCcCch-hhHHHHHHHcCCeEEEcccCccccCCCC
Q 025658 165 IRRAHAVHPITAVQLEWSLWSRDVE-AEIVPTCRELGIGIVAYSPLGRGFFSSG 217 (249)
Q Consensus 165 l~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~l~~~ 217 (249)
+.++....+|+++|++||++++..+ .+++++|+++||++++|+||++|+|++.
T Consensus 149 ~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~ 202 (292)
T PRK14863 149 PVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLP 202 (292)
T ss_pred HHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCC
Confidence 9888777889999999999998753 4799999999999999999999999864
No 14
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.4e-42 Score=282.36 Aligned_cols=231 Identities=26% Similarity=0.393 Sum_probs=199.3
Q ss_pred CCcceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeE
Q 025658 4 AVKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVE 83 (249)
Q Consensus 4 ~~~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~ 83 (249)
.|++|.+|++|++||++|||+..+++.|+. .++++....+..|+.+|||+|||++.||.++||..+|.+++++||+..+
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd-~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aYy 99 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGD-EDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAYY 99 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCC-cchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhhee
Confidence 388999999999999999999999998887 4667777777779999999999999999999999999999999999999
Q ss_pred EEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCC----CCHHHHHHHHHHHHHcCcccEEEcCc
Q 025658 84 LATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR----VPIEVTIGELKKLVEEGKIKYIGLSE 159 (249)
Q Consensus 84 i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~----~~~~~~~~~l~~l~~~G~ir~iGvs~ 159 (249)
|+||++....+.....+++++.+++++++||+||+++|+|++++|..+.. ..+.|++.+|++++++||+|+||++.
T Consensus 100 IaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGitg 179 (342)
T KOG1576|consen 100 IATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGITG 179 (342)
T ss_pred eeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeecc
Confidence 99999977666667788999999999999999999999999999998654 24678999999999999999999999
Q ss_pred ccHHHHHHHhhc--CCeeEEe--eccCccCcCchhhHHHHHHHcCCeEEEcccCccccCCCCCCCCCCCChhhHhhhccc
Q 025658 160 ASASTIRRAHAV--HPITAVQ--LEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQVCKS 235 (249)
Q Consensus 160 ~~~~~l~~~~~~--~~~~~~q--~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~ 235 (249)
++.+.+.++++. +.++++- .+|++.+...- ..+++.+..|++|+.-++++.|+|+...+++.+|.+....+....
T Consensus 180 ypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl-~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHPaS~Elk~~a~~ 258 (342)
T KOG1576|consen 180 YPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLL-RYLKRLKSKGVGVINASALSMGLLTNQGPPPWHPASDELKEAAKA 258 (342)
T ss_pred cchHHHHHHHhcCCCceeeehhhhhhccccHHHH-HHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCCCCHHHHHHHHH
Confidence 999999999876 3456554 55666554322 677788899999999999999999998888888877655554433
Q ss_pred h
Q 025658 236 T 236 (249)
Q Consensus 236 ~ 236 (249)
+
T Consensus 259 a 259 (342)
T KOG1576|consen 259 A 259 (342)
T ss_pred H
Confidence 3
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.1e-42 Score=280.97 Aligned_cols=210 Identities=29% Similarity=0.451 Sum_probs=187.6
Q ss_pred CcceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcC--CCCCCe
Q 025658 5 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG--GMRERV 82 (249)
Q Consensus 5 ~~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~--~~r~~~ 82 (249)
|.+..+++.|+++|++.+|+|++.. |+ .++.+....++.|++.|||+||-|+.||++..|+++|.+|+- ..|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~--~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WN--MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-cc--CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 6789999999999999999999965 43 345789999999999999999999999999999999999987 579999
Q ss_pred EEEeecCcccCCC----CCcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcC
Q 025658 83 ELATKFGISFADG----KREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLS 158 (249)
Q Consensus 83 ~i~tK~~~~~~~~----~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs 158 (249)
.|+||.+...+.. -...+.+.++|..|+++||+||++||+|+++||+||+..+.+++.+++..|++.||||++|||
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVS 157 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVS 157 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecC
Confidence 9999999876322 124567999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHhhc--CCeeEEeeccCccCcC-chhhHHHHHHHcCCeEEEcccCccccCCCC
Q 025658 159 EASASTIRRAHAV--HPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYSPLGRGFFSSG 217 (249)
Q Consensus 159 ~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~spl~~G~l~~~ 217 (249)
||++.+++-+-+. .++.++|+++|+.+.. ...+.+++|+++.|..++||||++|.+..+
T Consensus 158 Nf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g 219 (298)
T COG4989 158 NFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLG 219 (298)
T ss_pred CCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccC
Confidence 9999998877554 5688999999999876 445899999999999999999999876554
No 16
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.1e-41 Score=290.57 Aligned_cols=188 Identities=30% Similarity=0.364 Sum_probs=165.0
Q ss_pred CCCCCcceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcC--CC
Q 025658 1 MAGAVKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG--GM 78 (249)
Q Consensus 1 ~~~~~~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~--~~ 78 (249)
|++... ..| ++|+.||+||||||++ +.+++.+++++|++.|+|+||||+.|| +|+.+|++|+. .+
T Consensus 1 ~~~~~~-~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~ 67 (275)
T PRK11565 1 MANPTV-IKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVA 67 (275)
T ss_pred CCCCce-EEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCC
Confidence 444432 557 7899999999999975 347899999999999999999999998 79999999986 36
Q ss_pred CCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCC-CHHHHHHHHHHHHHcCcccEEEc
Q 025658 79 RERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRV-PIEVTIGELKKLVEEGKIKYIGL 157 (249)
Q Consensus 79 r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGv 157 (249)
|++++|+||++. .+++.+++++++||+|||++|||+|++|||++.. +..++|++|++|+++|+||+||+
T Consensus 68 R~~~~i~tK~~~----------~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGv 137 (275)
T PRK11565 68 REELFITTKLWN----------DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGV 137 (275)
T ss_pred HHHEEEEEEecC----------cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEee
Confidence 899999999852 2467899999999999999999999999998653 57899999999999999999999
Q ss_pred CcccHHHHHHHhhc--CCeeEEeeccCccCcCchhhHHHHHHHcCCeEEEcccCcccc
Q 025658 158 SEASASTIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGF 213 (249)
Q Consensus 158 s~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~ 213 (249)
||+++++++++... ..+.++|++|+++.+ ..+++++|+++||.+++|+||++|.
T Consensus 138 Sn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~--~~~~~~~~~~~~i~~~a~spl~~G~ 193 (275)
T PRK11565 138 CNFQIHHLQRLIDETGVTPVINQIELHPLMQ--QRQLHAWNATHKIQTESWSPLAQGG 193 (275)
T ss_pred ccCCHHHHHHHHHhCCCCceeeeeecCCccc--hHHHHHHHHHCCCEEEEEccCCCCC
Confidence 99999999988754 347889999999887 3589999999999999999999774
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=3e-39 Score=274.21 Aligned_cols=205 Identities=30% Similarity=0.362 Sum_probs=185.8
Q ss_pred CcceecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEE
Q 025658 5 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVEL 84 (249)
Q Consensus 5 ~~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i 84 (249)
|.||++|++|.++|.+|||+|++...|+...+.+.+.++|++|+++|||+||||..|..|.||..+|+||+...|+++.+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 78999999999999999999999877777788999999999999999999999999977799999999999988999999
Q ss_pred EeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCH---H--HHHHHHHHHHHcCcccEEEcCc
Q 025658 85 ATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPI---E--VTIGELKKLVEEGKIKYIGLSE 159 (249)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~---~--~~~~~l~~l~~~G~ir~iGvs~ 159 (249)
+||+..++ -.+.+.+++-++++|++|++||+|+|+||..+. ... + ..++.+++++++|+||++|+|.
T Consensus 81 aTKlp~~~-------~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFSf 152 (391)
T COG1453 81 ATKLPSWP-------VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFSF 152 (391)
T ss_pred EeecCCcc-------ccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeecC
Confidence 99999654 357899999999999999999999999999976 322 2 2699999999999999999999
Q ss_pred ccH-HHHHHHhhcCCeeEEeeccCccCcCch--hhHHHHHHHcCCeEEEcccCccccCCCC
Q 025658 160 ASA-STIRRAHAVHPITAVQLEWSLWSRDVE--AEIVPTCRELGIGIVAYSPLGRGFFSSG 217 (249)
Q Consensus 160 ~~~-~~l~~~~~~~~~~~~q~~~n~~~~~~~--~~~~~~~~~~gi~v~a~spl~~G~l~~~ 217 (249)
+++ +.+.+++...+++.+|++||.+++... .+.+++|.++|++|+.++|+.+|-|+..
T Consensus 153 Hgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~ 213 (391)
T COG1453 153 HGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN 213 (391)
T ss_pred CCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC
Confidence 875 567888888999999999999998744 3899999999999999999999999863
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.47 E-value=3.9e-07 Score=74.25 Aligned_cols=71 Identities=20% Similarity=0.198 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhc--CCeeEEeeccCccCcCchhhHHHHHHHcCCeEEEcc
Q 025658 136 IEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYS 207 (249)
Q Consensus 136 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~s 207 (249)
+.+.|+.||+++.+|+|..+|+|.+++.+|++++.. ..|.++|+++.-++.-|. ++.++|.++.|.+..++
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPp-dLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPP-DLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCH-HHHHHhhhcceeeeecC
Confidence 456899999999999999999999999999999987 557888998888777655 99999999999998876
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.96 E-value=1.2 Score=38.81 Aligned_cols=155 Identities=14% Similarity=0.041 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHH
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLK 115 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 115 (249)
+.++..+.++.+.+.|++.|+.--.-. -..+...=+++++.-. ++-|.-+... .++.+... .+-+.|+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~-~~~d~~~v~~lr~~~g-~~~l~vD~n~---------~~~~~~A~-~~~~~l~ 201 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGD-LEDDIERIRAIREAAP-DARLRVDANQ---------GWTPEEAV-ELLRELA 201 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCC-hhhHHHHHHHHHHhCC-CCeEEEeCCC---------CcCHHHHH-HHHHHHH
Confidence 456677888889999999998753111 0122223344444222 5556666532 23443322 2333444
Q ss_pred HcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEcCcccHHHHHHHhhcCCeeEEeeccCccC-cCchhhHH
Q 025658 116 RLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWS-RDVEAEIV 193 (249)
Q Consensus 116 rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~-~~~~~~~~ 193 (249)
.++ +.++-.|-.. +.++.+.+|++...+. +.|=+-++.+.+.++++....+++|+..+..- -.....+.
T Consensus 202 ~~~-----l~~iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~ 272 (316)
T cd03319 202 ELG-----VELIEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIA 272 (316)
T ss_pred hcC-----CCEEECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHH
Confidence 444 4444444322 2467778888887775 55666688999999999888999998866642 12234889
Q ss_pred HHHHHcCCeEEEcccCcc
Q 025658 194 PTCRELGIGIVAYSPLGR 211 (249)
Q Consensus 194 ~~~~~~gi~v~a~spl~~ 211 (249)
.+|+++|+.++.++-+..
T Consensus 273 ~~a~~~gi~~~~~~~~~~ 290 (316)
T cd03319 273 DLARAAGLKVMVGCMVES 290 (316)
T ss_pred HHHHHcCCCEEEECchhh
Confidence 999999999998765543
No 20
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=92.28 E-value=5.8 Score=34.97 Aligned_cols=154 Identities=12% Similarity=0.103 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcCCC-----hHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHH
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYGPH-----TNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAAC 110 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g-----~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 110 (249)
+.++..+.++.+.+.|++.|-.--..+.. .-....=+++++.-.+++.|...... .++.+...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~---------~~~~~~a~--- 206 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANG---------RWDLAEAI--- 206 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCC---------CCCHHHHH---
Confidence 45677788888899999998754322210 11222234444422345555554421 24444333
Q ss_pred HHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEcCcccHHHHHHHhhcCCeeEEeeccCccCc-Cc
Q 025658 111 EASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DV 188 (249)
Q Consensus 111 ~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~ 188 (249)
+.+++|. ..++.++..|-+. +.++.+.++++.-.+- ..|=|.++++.+.++++...++++|+.....-- ..
T Consensus 207 -~~~~~l~--~~~i~~iEqP~~~----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~ 279 (357)
T cd03316 207 -RLARALE--EYDLFWFEEPVPP----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITE 279 (357)
T ss_pred -HHHHHhC--ccCCCeEcCCCCc----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 3333442 2345556666432 2567778888876664 555556889999999988888999988766531 12
Q ss_pred hhhHHHHHHHcCCeEEEccc
Q 025658 189 EAEIVPTCRELGIGIVAYSP 208 (249)
Q Consensus 189 ~~~~~~~~~~~gi~v~a~sp 208 (249)
...+.+.|+++|+.++.++-
T Consensus 280 ~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 280 AKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHHcCCeEeccCC
Confidence 34899999999999887764
No 21
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=90.59 E-value=11 Score=32.68 Aligned_cols=183 Identities=14% Similarity=0.077 Sum_probs=94.9
Q ss_pred ceecccccCCCCCCCCCHHHHHHHHHHHHhc-CCCEEeCcCCcCCC---hHHHHHHHHhcCC--CCCCeEEEeecCcccC
Q 025658 20 QGLGCMGMSAFYGPPKPESDMIALIHHAINS-GITLLDTSDIYGPH---TNEILLGKALKGG--MRERVELATKFGISFA 93 (249)
Q Consensus 20 lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~g---~se~~lg~~l~~~--~r~~~~i~tK~~~~~~ 93 (249)
|.||++.-........+.++..+.+...++. |++.+|---.|+.- .+-..+-++|+.+ ....+.|+.-++..+.
T Consensus 72 iS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~p~ 151 (294)
T cd06543 72 VSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKISFTLPVLPT 151 (294)
T ss_pred EEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 4677765322111223555555556656644 99999987766521 1123445555551 2235666666654431
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHHcCC--CccceEEeecCCC--CCC-HHHHHHHHHHHHHcCcccEEEcCcccHHHHHHH
Q 025658 94 DGKREIRGDPAYVRAACEASLKRLDI--DCIDLYYQHRIDT--RVP-IEVTIGELKKLVEEGKIKYIGLSEASASTIRRA 168 (249)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~sL~rLg~--~~lDl~~lh~~~~--~~~-~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 168 (249)
..+++.+ .+-+..+.-|+ ++|.++-...-.. ..+ -.....+++.++.+=+--+=+ ++.+++-..
T Consensus 152 ------gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s~~~~~~~ 220 (294)
T cd06543 152 ------GLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LSDAELWAM 220 (294)
T ss_pred ------CCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CCHHHHHHH
Confidence 2333322 24444455554 4555555543322 123 234555666555443322212 444554444
Q ss_pred hhcCCeeEEeecc--CccCcCchhhHHHHHHHcCCeEEEcccCccccC
Q 025658 169 HAVHPITAVQLEW--SLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFF 214 (249)
Q Consensus 169 ~~~~~~~~~q~~~--n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~l 214 (249)
+...| .+-++.. .++.......+.++++++||+.+.+..+.+..-
T Consensus 221 ig~Tp-MiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD~~ 267 (294)
T cd06543 221 IGVTP-MIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNRDRP 267 (294)
T ss_pred ccccc-cccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccCCCC
Confidence 44433 1112211 133333345899999999999999999977654
No 22
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=90.43 E-value=9.8 Score=32.06 Aligned_cols=157 Identities=15% Similarity=0.145 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHH
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLK 115 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 115 (249)
+.++..+.++.+.+.|++.|-.--.-.. ..+...=+++++.-.+++.|..... ..++.+...+-+ +.|+
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~-~~d~~~v~~vr~~~g~~~~l~vDan---------~~~~~~~a~~~~-~~l~ 153 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDP-ARDVAVVAALREAVGDDAELRVDAN---------RGWTPKQAIRAL-RALE 153 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCH-HHHHHHHHHHHHhcCCCCEEEEeCC---------CCcCHHHHHHHH-HHHH
Confidence 4466777888889999999876432110 1222233445542233444433321 124444433322 3334
Q ss_pred HcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEcCcccHHHHHHHhhcCCeeEEeeccCccCc-CchhhHH
Q 025658 116 RLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIV 193 (249)
Q Consensus 116 rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~ 193 (249)
.+ ++.++..|-... .++.+.++++.-.+- +.|=+-++...+.++++...++++|+..+..-- .....+.
T Consensus 154 ~~-----~i~~iEeP~~~~----d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~ 224 (265)
T cd03315 154 DL-----GLDYVEQPLPAD----DLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVL 224 (265)
T ss_pred hc-----CCCEEECCCCcc----cHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHH
Confidence 44 445556664322 456777787776654 555566888899998888889999998776542 2234889
Q ss_pred HHHHHcCCeEEEcccCccc
Q 025658 194 PTCRELGIGIVAYSPLGRG 212 (249)
Q Consensus 194 ~~~~~~gi~v~a~spl~~G 212 (249)
+.|+++|+.++..+.+..+
T Consensus 225 ~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 225 AVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHcCCcEEecCccchH
Confidence 9999999999987665443
No 23
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=88.88 E-value=15 Score=32.01 Aligned_cols=133 Identities=11% Similarity=0.035 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEeC---cC-----CcCCC----hHHHHHHHHhcCC---CCCCeEEEeecCcccCCCCCcCC
Q 025658 36 PESDMIALIHHAINSGITLLDT---SD-----IYGPH----TNEILLGKALKGG---MRERVELATKFGISFADGKREIR 100 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dt---A~-----~Yg~g----~se~~lg~~l~~~---~r~~~~i~tK~~~~~~~~~~~~~ 100 (249)
++++..++.+.+.+.|+..||- ++ .||.| ...+.+.+.++.. -.+++-|+.|+.... +
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~-------~ 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGW-------D 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCC-------C
Confidence 5567777778888899999994 33 25554 3445555555541 122477888976432 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHH--H-HHHHHHHHHHcCcccEEEcCc-ccHHHHHHHhhcCCeeE
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIE--V-TIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITA 176 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~--~-~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~ 176 (249)
+.+. ...+-+.++..| +|.+.+|.-....... . -|+...++++.-.|--||... .++++..++++....+.
T Consensus 146 -~~~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~Dg 220 (312)
T PRK10550 146 -SGER-KFEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDA 220 (312)
T ss_pred -CchH-HHHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCE
Confidence 1122 235556677777 5778888654322211 1 478888999888888888887 47888888887766777
Q ss_pred Eeec
Q 025658 177 VQLE 180 (249)
Q Consensus 177 ~q~~ 180 (249)
+++-
T Consensus 221 VmiG 224 (312)
T PRK10550 221 VMIG 224 (312)
T ss_pred EEEc
Confidence 7663
No 24
>PRK13796 GTPase YqeH; Provisional
Probab=88.87 E-value=16 Score=32.51 Aligned_cols=125 Identities=14% Similarity=0.137 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHHHhcC---CCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHH
Q 025658 34 PKPESDMIALIHHAINSG---ITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAAC 110 (249)
Q Consensus 34 ~~~~~~~~~~l~~A~~~G---i~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 110 (249)
..+.++..++++..-+.- +-.+|..+.-+ .-...+.+.+. ...-++|.+|.-..+ .....+.+.+.+
T Consensus 53 ~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~~--~kpviLViNK~DLl~------~~~~~~~i~~~l 122 (365)
T PRK13796 53 SLTDDDFLKLLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFVG--NNPVLLVGNKADLLP------KSVKKNKVKNWL 122 (365)
T ss_pred CCCHHHHHHHHHhhcccCcEEEEEEECccCCC--chhHHHHHHhC--CCCEEEEEEchhhCC------CccCHHHHHHHH
Confidence 346667778888777665 55677665443 23334444443 455688999987543 123456677677
Q ss_pred HHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHh
Q 025658 111 EASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAH 169 (249)
Q Consensus 111 ~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 169 (249)
+...+.+|....+++.+... ....+++.++.+.++.+.+.+-.+|.+|.....|...+
T Consensus 123 ~~~~k~~g~~~~~v~~vSAk-~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L 180 (365)
T PRK13796 123 RQEAKELGLRPVDVVLISAQ-KGHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRI 180 (365)
T ss_pred HHHHHhcCCCcCcEEEEECC-CCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHH
Confidence 77777788655577777654 34568888888888888889999999999988766554
No 25
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=84.98 E-value=22 Score=29.87 Aligned_cols=91 Identities=15% Similarity=0.094 Sum_probs=54.0
Q ss_pred HHHHHHHcCCCccceEEeecCCCCCCHH-HHHHHHHHHHHcCcccEEEcCc-ccHHHHHHHhhcCCeeEEeeccCccCcC
Q 025658 110 CEASLKRLDIDCIDLYYQHRIDTRVPIE-VTIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQLEWSLWSRD 187 (249)
Q Consensus 110 ~~~sL~rLg~~~lDl~~lh~~~~~~~~~-~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~ 187 (249)
+-+-+++.| +|.+.+|..+...... -.++.+.++++.-.+.-+.... .+++.+.++.+...++.+.+---+....
T Consensus 160 ~~~~l~~~G---~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~ 236 (254)
T TIGR00735 160 WAKEVEKLG---AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYRE 236 (254)
T ss_pred HHHHHHHcC---CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCC
Confidence 334455666 5667777764432111 1356666666665666665553 5678888888776566655422222221
Q ss_pred -chhhHHHHHHHcCCeE
Q 025658 188 -VEAEIVPTCRELGIGI 203 (249)
Q Consensus 188 -~~~~~~~~~~~~gi~v 203 (249)
.-.++++.|+++|+.+
T Consensus 237 ~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 237 ITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCHHHHHHHHHHCCCcc
Confidence 2348899999999864
No 26
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=84.11 E-value=32 Score=31.03 Aligned_cols=150 Identities=14% Similarity=0.085 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHh-cCCCEEeCcCCcCCChHHHHHHHHhcC-CCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHH
Q 025658 36 PESDMIALIHHAIN-SGITLLDTSDIYGPHTNEILLGKALKG-GMRERVELATKFGISFADGKREIRGDPAYVRAACEAS 113 (249)
Q Consensus 36 ~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~g~se~~lg~~l~~-~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~s 113 (249)
+.++..+.++.+++ .|++.|=.--.-.+...+...=+++++ .+ ++.|..-.. ..++.+.. .+.
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea~~--~~~l~vDaN---------~~w~~~~A----~~~ 232 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEAFP--GARLRLDPN---------GAWSLETA----IRL 232 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHhCC--CCcEEEeCC---------CCcCHHHH----HHH
Confidence 55666677777775 699987543211100122222234444 32 333333221 12444433 333
Q ss_pred HHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEcCcccHHHHHHHhhcCCeeEEeeccCccCc-Cchhh
Q 025658 114 LKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAE 191 (249)
Q Consensus 114 L~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~ 191 (249)
+++|. - ++.++-.|-. .++.+.+|++...+- +.|=|-++.+++.++++...++++|......-- .....
T Consensus 233 ~~~l~--~-~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~k 303 (395)
T cd03323 233 AKELE--G-VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVR 303 (395)
T ss_pred HHhcC--c-CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHH
Confidence 44553 2 5566666532 577888888887665 677777888899999888889999987765431 12348
Q ss_pred HHHHHHHcCCeEEEcccC
Q 025658 192 IVPTCRELGIGIVAYSPL 209 (249)
Q Consensus 192 ~~~~~~~~gi~v~a~spl 209 (249)
+.+.|+++|+.+..++..
T Consensus 304 ia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 304 VAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHcCCeEEEecCc
Confidence 999999999999988765
No 27
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=82.83 E-value=33 Score=30.31 Aligned_cols=97 Identities=16% Similarity=0.017 Sum_probs=50.2
Q ss_pred CCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCCCccceE-Eeec-CCCC----CCHHHHHHHHHHHHHcCcc
Q 025658 79 RERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLY-YQHR-IDTR----VPIEVTIGELKKLVEEGKI 152 (249)
Q Consensus 79 r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~-~lh~-~~~~----~~~~~~~~~l~~l~~~G~i 152 (249)
..++.|..|+...... ....+.+... .+-+-|+.+|+|++++- -.|. +... .+-........++++.=.+
T Consensus 202 G~d~~v~iRi~~~D~~---~~g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~i 277 (353)
T cd02930 202 GEDFIIIYRLSMLDLV---EGGSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDI 277 (353)
T ss_pred CCCceEEEEecccccC---CCCCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCC
Confidence 4567777787743210 0113444332 34455677787776652 1121 1110 0111123345566666566
Q ss_pred cEEEcCc-ccHHHHHHHhhcCCeeEEee
Q 025658 153 KYIGLSE-ASASTIRRAHAVHPITAVQL 179 (249)
Q Consensus 153 r~iGvs~-~~~~~l~~~~~~~~~~~~q~ 179 (249)
--++... .+++.++++++....+.+++
T Consensus 278 PVi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 278 PVIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred CEEEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 6666654 46777888877766666665
No 28
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=82.37 E-value=7.8 Score=32.41 Aligned_cols=105 Identities=14% Similarity=0.100 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcC-cccEEEcCcccHHHHHHHhhcCCeeEEee
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEG-KIKYIGLSEASASTIRRAHAVHPITAVQL 179 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 179 (249)
.+.+...+ +-+.|.++|++++.+-..-.+...-...+.++.++++.+.+ .++...++....+.++.+.+.. ++.+++
T Consensus 16 ~s~e~~~~-i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i~i 93 (265)
T cd03174 16 FSTEDKLE-IAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEVRI 93 (265)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEEEE
Confidence 45555544 44457788988887776655422212345788888888888 5676677766566677766653 556666
Q ss_pred ccCccC--------cC------chhhHHHHHHHcCCeEEEcc
Q 025658 180 EWSLWS--------RD------VEAEIVPTCRELGIGIVAYS 207 (249)
Q Consensus 180 ~~n~~~--------~~------~~~~~~~~~~~~gi~v~a~s 207 (249)
.+...+ +. .-...++.+++.|+.+...-
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 94 FDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 554431 11 12267788888888766554
No 29
>PRK08609 hypothetical protein; Provisional
Probab=81.95 E-value=48 Score=31.53 Aligned_cols=148 Identities=15% Similarity=0.135 Sum_probs=82.8
Q ss_pred HHHHHHHHHhcCCCEEeCcCCcC-----CChHHHHHHHH------hcC-CCCCCeEEEeecCcccCCCCCcCCCCHHHHH
Q 025658 40 MIALIHHAINSGITLLDTSDIYG-----PHTNEILLGKA------LKG-GMRERVELATKFGISFADGKREIRGDPAYVR 107 (249)
Q Consensus 40 ~~~~l~~A~~~Gi~~~DtA~~Yg-----~g~se~~lg~~------l~~-~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~ 107 (249)
..+.++.|.+.|+..|=.++|+. .|.+...+-.. +++ ...=+|++..=+...+ +.. .
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~~-------~g~----~ 419 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDILP-------DGS----L 419 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeecC-------Ccc----h
Confidence 55689999999999999998863 12223222222 222 1111333333333221 111 1
Q ss_pred HHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCc---------cc--HHHHHHH-hhcCCee
Q 025658 108 AACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSE---------AS--ASTIRRA-HAVHPIT 175 (249)
Q Consensus 108 ~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~---------~~--~~~l~~~-~~~~~~~ 175 (249)
.-.+..|+. .||+ +.-+|++. ..+.++.++.+.++.+.|.+.-||=-. +. .+.+.++ .+.+ .
T Consensus 420 d~~~~~L~~--~D~v-I~SvH~~~-~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G--~ 493 (570)
T PRK08609 420 DYDDEVLAE--LDYV-IAAIHSSF-SQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN--T 493 (570)
T ss_pred hhcHHHHHh--hCEE-EEEeecCC-CCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC--C
Confidence 222234444 3554 66678753 345567788899999999888776544 11 1233333 2333 3
Q ss_pred EEeeccCccCcCchhhHHHHHHHcCCeEE
Q 025658 176 AVQLEWSLWSRDVEAEIVPTCRELGIGIV 204 (249)
Q Consensus 176 ~~q~~~n~~~~~~~~~~~~~~~~~gi~v~ 204 (249)
++|++-+.+...+....+..|.+.|+.++
T Consensus 494 ~lEINa~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 494 ALELNANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred EEEEcCCccccCccHHHHHHHHHcCCEEE
Confidence 55665555444445689999999998754
No 30
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=80.59 E-value=6.7 Score=32.02 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=45.5
Q ss_pred HHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcC-cccHHHHHHHhhcCCeeEEeecc
Q 025658 113 SLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLEW 181 (249)
Q Consensus 113 sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~ 181 (249)
.+..+|.|++-+.+........+.+.. ..+.+.. .+.++.+||. |-+++.+.++.+...++++|++-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECC
Confidence 456799999988744432222333333 3333322 3568899996 78899999999888899999864
No 31
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=80.56 E-value=0.82 Score=40.42 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=40.0
Q ss_pred HcCcccEEEcCcccHHHHHHHhhcC-CeeEEeeccCccCcCchhhHHHHHHHcCCe
Q 025658 148 EEGKIKYIGLSEASASTIRRAHAVH-PITAVQLEWSLWSRDVEAEIVPTCRELGIG 202 (249)
Q Consensus 148 ~~G~ir~iGvs~~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 202 (249)
=-|+||++||-=++++.++++++.. .-+..+.+..++-.-.+..+++.+++.||+
T Consensus 262 CVGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 262 CVGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hhcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 4599999999999999999987653 234444455554433455888888888886
No 32
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=79.97 E-value=36 Score=30.09 Aligned_cols=152 Identities=9% Similarity=0.021 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHH
Q 025658 37 ESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKR 116 (249)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~r 116 (249)
.++..+.+..+.+.|++.|=.--...+-..+...=+++|+.-.+++.|..-.. ..++.+...+-+ +.|+.
T Consensus 142 ~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN---------~~~~~~~A~~~~-~~l~~ 211 (355)
T cd03321 142 AKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYN---------QSLTVPEAIERG-QALDQ 211 (355)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCC---------CCcCHHHHHHHH-HHHHc
Confidence 34556666667778887654321111001222333455552334554443321 124554433222 22333
Q ss_pred cCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcc-cEEEcCcccHHHHHHHhhcCCeeEEeeccCccCc-CchhhHHH
Q 025658 117 LDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKI-KYIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIVP 194 (249)
Q Consensus 117 Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~ 194 (249)
+ ++.++..|-.. +.++.+.+|+++--| -+.|=+.++..++.++++...++++|+..+.+-- .....+.+
T Consensus 212 ~-----~i~~iEeP~~~----~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~ 282 (355)
T cd03321 212 E-----GLTWIEEPTLQ----HDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASA 282 (355)
T ss_pred C-----CCCEEECCCCC----cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHH
Confidence 3 55566665432 256777788877554 3666667889999999888888999987776531 12348899
Q ss_pred HHHHcCCeEEEcc
Q 025658 195 TCRELGIGIVAYS 207 (249)
Q Consensus 195 ~~~~~gi~v~a~s 207 (249)
.|+++|+.++.+.
T Consensus 283 ~A~~~gi~~~~h~ 295 (355)
T cd03321 283 LAEQAGIPMSSHL 295 (355)
T ss_pred HHHHcCCeecccc
Confidence 9999999987553
No 33
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=79.65 E-value=13 Score=30.06 Aligned_cols=151 Identities=20% Similarity=0.203 Sum_probs=93.1
Q ss_pred HHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHH-----------H
Q 025658 42 ALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAA-----------C 110 (249)
Q Consensus 42 ~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~-----------~ 110 (249)
+++...++.|-+..|-.-..| . +-+.|++ . .++.. .| ...+.+.+.++ +
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG-----~-LL~~L~~-~-k~v~g---~G---------vEid~~~v~~cv~rGv~Viq~Dl 64 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG-----E-LLAYLKD-E-KQVDG---YG---------VEIDPDNVAACVARGVSVIQGDL 64 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch-----H-HHHHHHH-h-cCCeE---EE---------EecCHHHHHHHHHcCCCEEECCH
Confidence 456667888888888765444 1 2244443 1 11110 11 12344444444 4
Q ss_pred HHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhh-cCC-eeEEeeccCccCcC-
Q 025658 111 EASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHA-VHP-ITAVQLEWSLWSRD- 187 (249)
Q Consensus 111 ~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~-~~~-~~~~q~~~n~~~~~- 187 (249)
++.|..+.-+.+|.+.+... .+.+....+.|+++.+-|+---|++.||.-...+--+- .+. |..-+++|+.++..
T Consensus 65 d~gL~~f~d~sFD~VIlsqt--LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPN 142 (193)
T PF07021_consen 65 DEGLADFPDQSFDYVILSQT--LQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPN 142 (193)
T ss_pred HHhHhhCCCCCccEEehHhH--HHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCC
Confidence 44555555556666666542 12234456678888899998889999998776554433 332 45566777766542
Q ss_pred ----chhhHHHHHHHcCCeEEEcccCccccC
Q 025658 188 ----VEAEIVPTCRELGIGIVAYSPLGRGFF 214 (249)
Q Consensus 188 ----~~~~~~~~~~~~gi~v~a~spl~~G~l 214 (249)
--.+.-++|++.|+.+.-..++..+.-
T Consensus 143 ih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~~ 173 (193)
T PF07021_consen 143 IHLCTIKDFEDLCRELGIRIEERVFLDGGRR 173 (193)
T ss_pred cccccHHHHHHHHHHCCCEEEEEEEEcCCCC
Confidence 124888999999999999999987764
No 34
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=79.59 E-value=12 Score=33.68 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHc
Q 025658 38 SDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRL 117 (249)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rL 117 (249)
.....++++|++.|++++||+.+.. ....+.... .+..+.+..-.|..+ ..+--.....+++-.+
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~---~~~~~~~~a---~~Agit~v~~~G~dP-------Gi~nv~a~~a~~~~~~-- 143 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEE---PPWKLDEEA---KKAGITAVLGCGFDP-------GITNVLAAYAAKELFD-- 143 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCc---hhhhhhHHH---HHcCeEEEcccCcCc-------chHHHHHHHHHHHhhc--
Confidence 4466899999999999999998776 322222222 345677777777544 1222222233332222
Q ss_pred CCCccceEEeecCCCC
Q 025658 118 DIDCIDLYYQHRIDTR 133 (249)
Q Consensus 118 g~~~lDl~~lh~~~~~ 133 (249)
.++++|++..+.|+..
T Consensus 144 ~i~si~iy~g~~g~~~ 159 (389)
T COG1748 144 EIESIDIYVGGLGEHG 159 (389)
T ss_pred cccEEEEEEecCCCCC
Confidence 5789999999998765
No 35
>PRK08392 hypothetical protein; Provisional
Probab=79.41 E-value=32 Score=27.98 Aligned_cols=150 Identities=17% Similarity=0.152 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCCCEEeCcCCcCCC---hHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHH
Q 025658 39 DMIALIHHAINSGITLLDTSDIYGPH---TNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLK 115 (249)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g---~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 115 (249)
...+.+++|.+.|++.+=.++|.... .-+..+.+.-+-..+.++.| +.|.... ..+.. .+..++.++
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~i--l~GiE~~-------~~~~~-~~~~~~~~~ 84 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVV--LAGIEAN-------ITPNG-VDITDDFAK 84 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceE--EEeEEee-------ecCCc-chhHHHHHh
Confidence 36678999999999999777775310 11111111111011123322 2222210 00111 122333444
Q ss_pred HcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcc--------cHHHHHHH---hhcCCeeEEeeccCcc
Q 025658 116 RLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEA--------SASTIRRA---HAVHPITAVQLEWSLW 184 (249)
Q Consensus 116 rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~--------~~~~l~~~---~~~~~~~~~q~~~n~~ 184 (249)
+ .||+ +.-+|.........+..+.+.++.+.+.+.-+|=-.. ..+.++++ +.... +.+++|-.
T Consensus 85 ~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g---~~lEiNt~ 158 (215)
T PRK08392 85 K--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG---KAFEISSR 158 (215)
T ss_pred h--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC---CEEEEeCC
Confidence 3 3454 5566844333335667788888889998877764321 11233332 22211 11222222
Q ss_pred CcCchhhHHHHHHHcCCeEE
Q 025658 185 SRDVEAEIVPTCRELGIGIV 204 (249)
Q Consensus 185 ~~~~~~~~~~~~~~~gi~v~ 204 (249)
.+.+...+++.|++.|+.++
T Consensus 159 ~~~p~~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 159 YRVPDLEFIRECIKRGIKLT 178 (215)
T ss_pred CCCCCHHHHHHHHHcCCEEE
Confidence 22345589999999997654
No 36
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=79.23 E-value=15 Score=33.41 Aligned_cols=109 Identities=20% Similarity=0.236 Sum_probs=66.1
Q ss_pred cCcceecccccCCC----CCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCccc
Q 025658 17 VSAQGLGCMGMSAF----YGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISF 92 (249)
Q Consensus 17 vs~lglG~~~~g~~----~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~ 92 (249)
|-++.+|..+|... .+..-+.+++.+++..+.+.|+.-|..-=.|| +
T Consensus 148 vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyg-------------------------l---- 198 (416)
T COG0635 148 VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYG-------------------------L---- 198 (416)
T ss_pred CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-------------------------C----
Confidence 44777777776432 23333456677777777777777666666665 1
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHHcCCCccceEEeec-CCC---------C-CC----HHHHHH-HHHHHHHcCcccEEE
Q 025658 93 ADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHR-IDT---------R-VP----IEVTIG-ELKKLVEEGKIKYIG 156 (249)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~-~~~---------~-~~----~~~~~~-~l~~l~~~G~ir~iG 156 (249)
+.-+.+.+.+.+++.++ |+.++|.+|.+-. |.. . .+ ..+.++ +.+.|.+.|. +.+|
T Consensus 199 ------P~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~ye 270 (416)
T COG0635 199 ------PGQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYE 270 (416)
T ss_pred ------CCCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEe
Confidence 12456667776766653 6788888888743 211 0 11 113344 4455666777 9999
Q ss_pred cCcccH
Q 025658 157 LSEASA 162 (249)
Q Consensus 157 vs~~~~ 162 (249)
+|||..
T Consensus 271 isnfa~ 276 (416)
T COG0635 271 ISNFAK 276 (416)
T ss_pred echhcC
Confidence 999887
No 37
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=79.04 E-value=36 Score=28.83 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcC
Q 025658 36 PESDMIALIHHAINSGITLLDTSD 59 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~ 59 (249)
+.++..++++...+.||..|+...
T Consensus 20 s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 20 DTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEC
Confidence 457888999999999999999863
No 38
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=78.86 E-value=18 Score=29.69 Aligned_cols=87 Identities=10% Similarity=0.048 Sum_probs=61.7
Q ss_pred cceEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEcCcccHHHHHHHhhcCCeeEEeeccCccCc-CchhhHHHHHHHc
Q 025658 122 IDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCREL 199 (249)
Q Consensus 122 lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~ 199 (249)
.++.++-.|-+.. .++.+.+|.+...+. +.+=|..+.+.+.+++....++++|+..+..-- .....+...|+++
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 4566666664433 456677788777665 555566778888788887888999988776532 1234888999999
Q ss_pred CCeEEEcccCccc
Q 025658 200 GIGIVAYSPLGRG 212 (249)
Q Consensus 200 gi~v~a~spl~~G 212 (249)
|+.++.++.+..|
T Consensus 196 gi~~~~~~~~~s~ 208 (229)
T cd00308 196 GIRVMVHGTLESS 208 (229)
T ss_pred CCEEeecCCCCCH
Confidence 9999998876544
No 39
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=78.18 E-value=56 Score=30.01 Aligned_cols=156 Identities=11% Similarity=0.051 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHh-cCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHH
Q 025658 36 PESDMIALIHHAIN-SGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASL 114 (249)
Q Consensus 36 ~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL 114 (249)
++++..+..+.+++ .|++.|=.--.-.++......=+++++.- +++.|..= .+. .++.+. ..+.+
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~~~~~Di~~v~avRea~-~d~~L~vD----AN~-----~wt~~~----Ai~~~ 245 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKGGVLRGEEEIEAVTALAKRF-PQARITLD----PNG-----AWSLDE----AIALC 245 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHHHHHHhC-CCCeEEEE----CCC-----CCCHHH----HHHHH
Confidence 34556566666665 59998753211111112222234455411 23333221 111 234433 23334
Q ss_pred HHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEcCcccHHHHHHHhhcCCeeEEeeccCccCcCchhhHH
Q 025658 115 KRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIV 193 (249)
Q Consensus 115 ~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~ 193 (249)
++|. ++ +.++-.|-+..+..+.++.+.+|++...|- +.|=+.++..++.++++...++++|......--.....+.
T Consensus 246 ~~Le-~~--~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa 322 (441)
T TIGR03247 246 KDLK-GV--LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVA 322 (441)
T ss_pred HHhh-hh--hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHH
Confidence 4443 22 345555543332112377788887776663 5566778888999998888888888876422111234889
Q ss_pred HHHHHcCCeEEEccc
Q 025658 194 PTCRELGIGIVAYSP 208 (249)
Q Consensus 194 ~~~~~~gi~v~a~sp 208 (249)
+.|+.+|+.+..++.
T Consensus 323 ~lA~a~Gi~v~~h~~ 337 (441)
T TIGR03247 323 QMCHDWGLTWGSHSN 337 (441)
T ss_pred HHHHHcCCEEEEeCC
Confidence 999999999888753
No 40
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=78.01 E-value=43 Score=28.99 Aligned_cols=97 Identities=15% Similarity=0.228 Sum_probs=68.1
Q ss_pred HHHHHHHcCCCccceEEeecCC--C---CCCHHHHHHHHHHHHHcCcc-cEEEcCc---ccHHHHHHHhhcCC-eeEEee
Q 025658 110 CEASLKRLDIDCIDLYYQHRID--T---RVPIEVTIGELKKLVEEGKI-KYIGLSE---ASASTIRRAHAVHP-ITAVQL 179 (249)
Q Consensus 110 ~~~sL~rLg~~~lDl~~lh~~~--~---~~~~~~~~~~l~~l~~~G~i-r~iGvs~---~~~~~l~~~~~~~~-~~~~q~ 179 (249)
.++..+++| .|++.+|-.. + +.+..+..+.|+++.+.=+| -.||=|. -+++.++++.+... =.|.-.
T Consensus 156 Ark~Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLa 232 (403)
T COG2069 156 ARKCVKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLA 232 (403)
T ss_pred HHHHHHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEee
Confidence 455567888 5788888653 2 24678999999999998887 4677775 45778888877621 233333
Q ss_pred ccCccCcCchhhHHHHHHHcCCeEEEcccCcc
Q 025658 180 EWSLWSRDVEAEIVPTCRELGIGIVAYSPLGR 211 (249)
Q Consensus 180 ~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~ 211 (249)
..|+ +.+++ .+.+.+.++|=.|++|+++.-
T Consensus 233 Sanl-dlDy~-~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 233 SANL-DLDYE-RIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred cccc-ccCHH-HHHHHHHhcCceEEEeeccCh
Confidence 3343 22333 889999999999999999853
No 41
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=77.64 E-value=17 Score=29.80 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=53.4
Q ss_pred HHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCc-ccEEEcC-cccHHHHHHHhhcCCeeEEeeccCccCcCchhh
Q 025658 114 LKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGK-IKYIGLS-EASASTIRRAHAVHPITAVQLEWSLWSRDVEAE 191 (249)
Q Consensus 114 L~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~ 191 (249)
...+|.+|+-+.+.-......+. +.+.++.+.-. ++.+||. |.+.+.+.++++...++.+|+.-. ...+
T Consensus 18 a~~~gad~iG~If~~~SpR~Vs~----~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~-----e~~~ 88 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRYVSP----EQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGD-----EDPE 88 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCcCCH----HHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCC-----CCHH
Confidence 45678888887766532233333 33334444433 8899998 678888999999999999998544 2335
Q ss_pred HHHHHHHcC-CeEE
Q 025658 192 IVPTCRELG-IGIV 204 (249)
Q Consensus 192 ~~~~~~~~g-i~v~ 204 (249)
.++..++.. +.++
T Consensus 89 ~~~~l~~~~~~~v~ 102 (208)
T COG0135 89 YIDQLKEELGVPVI 102 (208)
T ss_pred HHHHHHhhcCCceE
Confidence 666666553 5554
No 42
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=75.71 E-value=15 Score=29.00 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=65.0
Q ss_pred hcCCCEEeCcCC--------cCCChHHHHHHHHhcCCCCCCeEEEeecCccc-CCCCCcC--CCCHHHHHHHHHHHHHHc
Q 025658 49 NSGITLLDTSDI--------YGPHTNEILLGKALKGGMRERVELATKFGISF-ADGKREI--RGDPAYVRAACEASLKRL 117 (249)
Q Consensus 49 ~~Gi~~~DtA~~--------Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~-~~~~~~~--~~~~~~i~~~~~~sL~rL 117 (249)
..+|-|+||-.. |- |+.+..+-..|.+ .|-++.|.++---.+ .++-.+. ..++..+.+-+++.|++.
T Consensus 78 a~~v~fiDTD~itT~~~~~~y~-gr~~P~~~~~i~~-~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~ 155 (187)
T COG3172 78 ANKVAFIDTDFLTTQAFCKKYE-GREHPFLQALIAE-YRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEEN 155 (187)
T ss_pred CCceEEEeccHHHHHHHHHHHc-ccCCchHHHHHhh-cccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHh
Confidence 349999999653 32 3445566667766 455666665543222 3332222 236778888899999999
Q ss_pred CCCccceEEeecCCCCCCHHHHHHHHHHHHHcC
Q 025658 118 DIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEG 150 (249)
Q Consensus 118 g~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G 150 (249)
+.+| +.|..+++........++.+++...+
T Consensus 156 ~~~~---v~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 156 NIPF---VVIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred CCcE---EEEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 8776 56777777778888888888888776
No 43
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=75.45 E-value=51 Score=28.17 Aligned_cols=151 Identities=12% Similarity=0.144 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCc---C-------CcCCChHHHHHHHHhcCCCCC-CeEEEeecCcccCCCCCcCCCCHH
Q 025658 36 PESDMIALIHHAINSGITLLDTS---D-------IYGPHTNEILLGKALKGGMRE-RVELATKFGISFADGKREIRGDPA 104 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA---~-------~Yg~g~se~~lg~~l~~~~r~-~~~i~tK~~~~~~~~~~~~~~~~~ 104 (249)
+.++..++.+.+.+.|+..||.- + .|+ .+.+.+.+.++...+. ++-|..|+.... +
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~-----------~ 166 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVKLTPNV-----------T 166 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEEeCCCc-----------h
Confidence 45778888888889999999872 2 233 4566666666653222 677888986321 1
Q ss_pred HHHHHHHHHHHHcCCCccceEE------eecCC--C---------C--CCHHHHHHHHHHHHHcCcccEEEcCcc-cHHH
Q 025658 105 YVRAACEASLKRLDIDCIDLYY------QHRID--T---------R--VPIEVTIGELKKLVEEGKIKYIGLSEA-SAST 164 (249)
Q Consensus 105 ~i~~~~~~sL~rLg~~~lDl~~------lh~~~--~---------~--~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~ 164 (249)
.+. .+-+.++..|.+.+++.- +|.-. + . ....-.++.+.++++.=.+--||.... +++.
T Consensus 167 ~~~-~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~d 245 (296)
T cd04740 167 DIV-EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGED 245 (296)
T ss_pred hHH-HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 222 334456778877665531 11100 0 0 001125677778887767888998875 7889
Q ss_pred HHHHhhcCCeeEEeeccCccC-cC----chhhHHHHHHHcCC
Q 025658 165 IRRAHAVHPITAVQLEWSLWS-RD----VEAEIVPTCRELGI 201 (249)
Q Consensus 165 l~~~~~~~~~~~~q~~~n~~~-~~----~~~~~~~~~~~~gi 201 (249)
+.+++..+ .+.+|+--.++. .. ...++-++.+++|.
T Consensus 246 a~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 246 ALEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHHcC-CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 99988765 688887544333 11 22356666777664
No 44
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=75.27 E-value=8.9 Score=31.33 Aligned_cols=66 Identities=23% Similarity=0.264 Sum_probs=43.7
Q ss_pred HHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcC-cccHHHHHHHhhcCCeeEEeecc
Q 025658 114 LKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLEW 181 (249)
Q Consensus 114 L~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~ 181 (249)
+..+|.|++-+.+........+.+ ..+.+.+.. .+.+..+||. |-+++.+.++++...++.+|++-
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~~~-~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg 85 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVSPE-QAAELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHG 85 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCCHH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 456899998886433222223333 333332222 3568899998 67888999999988999999864
No 45
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=74.70 E-value=38 Score=26.33 Aligned_cols=148 Identities=14% Similarity=0.118 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcC-CC-----hHHHHHHHHhcCCC-CCCeEEEeecCcccCCCCCcCCCCHHHHHH
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYG-PH-----TNEILLGKALKGGM-RERVELATKFGISFADGKREIRGDPAYVRA 108 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-~g-----~se~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~ 108 (249)
.+|.....++.|++.|.+.|++--..- +| +.-..+-+.|+..+ +-.+.|=.|.... .+.+.+
T Consensus 11 ~pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hdi~tL~e~l~~~~~~~~i~leiK~~~~-----------~~~~~~ 79 (189)
T cd08556 11 APENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHDIPTLEEVLELVKGGVGLNIELKEPTR-----------YPGLEA 79 (189)
T ss_pred CCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCCCHHHHHHhcccCcEEEEEECCCCC-----------chhHHH
Confidence 347788999999999999998754432 11 01122223333322 2235555554311 233455
Q ss_pred HHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCccc--HHHHH-HHhhcCCeeEEeeccCccC
Q 025658 109 ACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEAS--ASTIR-RAHAVHPITAVQLEWSLWS 185 (249)
Q Consensus 109 ~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~--~~~l~-~~~~~~~~~~~q~~~n~~~ 185 (249)
.+-+.+++.+. .+-+++.+.+. +.+..+.+...+= .+|+...+ ..... .......++.+...+..+
T Consensus 80 ~l~~~i~~~~~--~~~v~i~s~~~-----~~l~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 148 (189)
T cd08556 80 KVAELLREYGL--EERVVVSSFDH-----EALRALKELDPEV---PTGLLVDKPPLDPLLAELARALGADAVNPHYKLL- 148 (189)
T ss_pred HHHHHHHHcCC--cCCEEEEeCCH-----HHHHHHHHhCCCC---cEEEEeecCcccchhhhHHHhcCCeEEccChhhC-
Confidence 55666666652 24444444322 2233332222111 12322221 11111 112223345555554443
Q ss_pred cCchhhHHHHHHHcCCeEEEccc
Q 025658 186 RDVEAEIVPTCRELGIGIVAYSP 208 (249)
Q Consensus 186 ~~~~~~~~~~~~~~gi~v~a~sp 208 (249)
...+++.|+++|+.+.+|..
T Consensus 149 ---~~~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 149 ---TPELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred ---CHHHHHHHHHcCCEEEEEcC
Confidence 34899999999999999974
No 46
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=73.97 E-value=63 Score=28.52 Aligned_cols=153 Identities=12% Similarity=0.085 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcCCC--------hHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHH
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYGPH--------TNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVR 107 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g--------~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~ 107 (249)
+.++..+.+..+.+.|++.|=.--....+ ..+...=+++++.-.+++.|..=.. ..++.+.
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN---------~~~~~~~-- 191 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFH---------GRVSKPM-- 191 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECC---------CCCCHHH--
Confidence 34556666777788999988754321100 1223333445542222333322211 1234332
Q ss_pred HHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEcCcccHHHHHHHhhcCCeeEEeeccCccC-
Q 025658 108 AACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWS- 185 (249)
Q Consensus 108 ~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~- 185 (249)
..+.++.|. .+++.++-.|-... .++.+.+|+++.-+. +.|=|.++..++..+++...++++|......-
T Consensus 192 --A~~~~~~l~--~~~i~~iEeP~~~~----d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GG 263 (352)
T cd03325 192 --AKDLAKELE--PYRLLFIEEPVLPE----NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGG 263 (352)
T ss_pred --HHHHHHhcc--ccCCcEEECCCCcc----CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCC
Confidence 233344443 24555666554322 477888888876664 66777789999999888777899998866542
Q ss_pred cCchhhHHHHHHHcCCeEEEcc
Q 025658 186 RDVEAEIVPTCRELGIGIVAYS 207 (249)
Q Consensus 186 ~~~~~~~~~~~~~~gi~v~a~s 207 (249)
-.....+.+.|+++|+.++.++
T Consensus 264 it~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 264 ITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred HHHHHHHHHHHHHcCCcEeccC
Confidence 1223489999999999998775
No 47
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=73.89 E-value=48 Score=29.67 Aligned_cols=94 Identities=13% Similarity=0.164 Sum_probs=61.0
Q ss_pred eEEeecCCCC-----------CCHHHHHHHHHHHHHcCcc----cEEEcC--cccHHHHHHHhh---cC------CeeEE
Q 025658 124 LYYQHRIDTR-----------VPIEVTIGELKKLVEEGKI----KYIGLS--EASASTIRRAHA---VH------PITAV 177 (249)
Q Consensus 124 l~~lh~~~~~-----------~~~~~~~~~l~~l~~~G~i----r~iGvs--~~~~~~l~~~~~---~~------~~~~~ 177 (249)
.+-||.|++. -++++.++++.+..++..= .++=+. |-+.++..++.+ -. +..++
T Consensus 231 AiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VN 310 (371)
T PRK14461 231 AISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVN 310 (371)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEE
Confidence 3678998653 3578899998888654331 122222 556666555543 34 57889
Q ss_pred eeccCccCcC----ch----hhHHHHHHHcCCeEEEcccCc------cccCCCC
Q 025658 178 QLEWSLWSRD----VE----AEIVPTCRELGIGIVAYSPLG------RGFFSSG 217 (249)
Q Consensus 178 q~~~n~~~~~----~~----~~~~~~~~~~gi~v~a~spl~------~G~l~~~ 217 (249)
-++||..... +. ....+.++++||.+......+ +|.|..+
T Consensus 311 LIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~DI~AACGQL~~~ 364 (371)
T PRK14461 311 LIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVEIAAACGQLAGR 364 (371)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcChhhcCcccccC
Confidence 9999986432 11 156667888999999998874 4666553
No 48
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=73.64 E-value=41 Score=31.29 Aligned_cols=69 Identities=7% Similarity=0.084 Sum_probs=47.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCccc----EEEcCcccHHHHHHHhhc---CCeeEEeeccCccCcCchhhHHHHHHHcCC
Q 025658 131 DTRVPIEVTIGELKKLVEEGKIK----YIGLSEASASTIRRAHAV---HPITAVQLEWSLWSRDVEAEIVPTCRELGI 201 (249)
Q Consensus 131 ~~~~~~~~~~~~l~~l~~~G~ir----~iGvs~~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi 201 (249)
.-....++..++++.+++.|..- -+|+-+.+.+.+++.++. ..++ ++.++.+..-+..++.+.+++.+.
T Consensus 317 ~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~--~~~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 317 RKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPD--QANWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCC--ceEEEEecCCCCcHHHHHHHhhcc
Confidence 33456778889999999999743 356667777777665543 3333 344566666667789998888764
No 49
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=73.60 E-value=48 Score=27.19 Aligned_cols=121 Identities=12% Similarity=0.116 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHhcCCCEEeCc-CCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHH
Q 025658 35 KPESDMIALIHHAINSGITLLDTS-DIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEAS 113 (249)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA-~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~s 113 (249)
.+.++..++++...+.||..|++. +..+. ...+.+.+..+..+..++ .+... ...+.++..++..
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~~~--~~~~~-----------~~~~~i~~~~~~~ 76 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNARL--QALCR-----------ANEEDIERAVEAA 76 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSSEE--EEEEE-----------SCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhccccc--ceeee-----------ehHHHHHHHHHhh
Confidence 466888999999999999999999 44431 223334443333223222 22221 3345566655533
Q ss_pred HHHcCCCccceEEeecC-----CCCCC----HHHHHHHHHHHHHcCcccEEEcCc---ccHHHHHHHhh
Q 025658 114 LKRLDIDCIDLYYQHRI-----DTRVP----IEVTIGELKKLVEEGKIKYIGLSE---ASASTIRRAHA 170 (249)
Q Consensus 114 L~rLg~~~lDl~~lh~~-----~~~~~----~~~~~~~l~~l~~~G~ir~iGvs~---~~~~~l~~~~~ 170 (249)
...|.+.+.++.--++ ....+ ++...+..+..++.|....+++-. ++++.+.++.+
T Consensus 77 -~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~ 144 (237)
T PF00682_consen 77 -KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAE 144 (237)
T ss_dssp -HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHH
T ss_pred -HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHH
Confidence 4667766665542221 00111 344556667777888877777743 45555555443
No 50
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=72.77 E-value=73 Score=28.73 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=41.1
Q ss_pred ccCcceecccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCC----hHHHHHHHHhcC-----CCCCCeEEEe
Q 025658 16 EVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPH----TNEILLGKALKG-----GMRERVELAT 86 (249)
Q Consensus 16 ~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g----~se~~lg~~l~~-----~~r~~~~i~t 86 (249)
+|-+++.|==+. ++.-.+..++.+++..|+..| ....|++. .+-+.+.+.+.+ ...+++++++
T Consensus 62 ~iipl~~GDPsv---~~~~~ts~~a~~Av~~al~Sg-----k~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~lts 133 (447)
T KOG0259|consen 62 PILPLGHGDPSV---YPCFRTSQEAEQAVVDALRSG-----KGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTS 133 (447)
T ss_pred eeccCCCCCCCc---cccccCCHHHHHHHHHHHhcC-----CCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEec
Confidence 344555544332 333334467888888899887 45577753 567777787654 5677888876
Q ss_pred ec
Q 025658 87 KF 88 (249)
Q Consensus 87 K~ 88 (249)
-.
T Consensus 134 GC 135 (447)
T KOG0259|consen 134 GC 135 (447)
T ss_pred cc
Confidence 54
No 51
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=72.27 E-value=70 Score=28.34 Aligned_cols=146 Identities=10% Similarity=0.040 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHH
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLK 115 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 115 (249)
+.++..+.++.+.+.|++.|=.-- .+. =+++++.-.+++.|..-.. ..++.+.. .+.++
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiKv-------~~~-v~avre~~G~~~~l~vDaN---------~~w~~~~A----~~~~~ 184 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQL-------PKL-FEAVREKFGFEFHLLHDVH---------HRLTPNQA----ARFGK 184 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeCH-------HHH-HHHHHhccCCCceEEEECC---------CCCCHHHH----HHHHH
Confidence 345566777777889999874311 122 2444442233444432211 12444432 23333
Q ss_pred HcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEcCcccHHHHHHHhhcCCeeEEeeccCccCc-CchhhHH
Q 025658 116 RLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIV 193 (249)
Q Consensus 116 rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~ 193 (249)
.|. .+++.++-.|-+. +.++.+.+|++...+- +.|=|-++...+..++....++++|+.....-- .....+.
T Consensus 185 ~l~--~~~l~~iEeP~~~----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia 258 (361)
T cd03322 185 DVE--PYRLFWMEDPTPA----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIA 258 (361)
T ss_pred Hhh--hcCCCEEECCCCc----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHH
Confidence 443 2466666666432 2477788888887775 778888899999999988889999988765431 1234899
Q ss_pred HHHHHcCCeEEEccc
Q 025658 194 PTCRELGIGIVAYSP 208 (249)
Q Consensus 194 ~~~~~~gi~v~a~sp 208 (249)
+.|+++|+.+..++.
T Consensus 259 ~~A~~~gi~~~~h~~ 273 (361)
T cd03322 259 DLASLYGVRTGWHGP 273 (361)
T ss_pred HHHHHcCCeeeccCC
Confidence 999999999987654
No 52
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=71.44 E-value=32 Score=31.21 Aligned_cols=86 Identities=12% Similarity=0.000 Sum_probs=63.1
Q ss_pred ceEEeecCCCCCCHHHHHHHHHHHHHc------CcccEEEcCcccHHHHHHHhhcCCeeEEeeccCccCc-CchhhHHHH
Q 025658 123 DLYYQHRIDTRVPIEVTIGELKKLVEE------GKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPT 195 (249)
Q Consensus 123 Dl~~lh~~~~~~~~~~~~~~l~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~ 195 (249)
++ ++-.|-+..+.++.++.+.+|+++ ..=-..+=|-++.+.+.++++....+++|+..+-+-- .....+.++
T Consensus 265 ~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~l 343 (408)
T TIGR01502 265 HL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMY 343 (408)
T ss_pred Ce-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHH
Confidence 44 777775544445567888888766 3334666667889999999988888999998876432 124589999
Q ss_pred HHHcCCeEEEcccC
Q 025658 196 CRELGIGIVAYSPL 209 (249)
Q Consensus 196 ~~~~gi~v~a~spl 209 (249)
|+++||.++..+..
T Consensus 344 A~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 344 CKANGMGAYVGGTC 357 (408)
T ss_pred HHHcCCEEEEeCCC
Confidence 99999999987655
No 53
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=70.87 E-value=65 Score=27.37 Aligned_cols=109 Identities=10% Similarity=-0.004 Sum_probs=65.7
Q ss_pred CcceecccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEeCcC-CcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCC
Q 025658 18 SAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSD-IYGPHTNEILLGKALKGGMRERVELATKFGISFADGK 96 (249)
Q Consensus 18 s~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~-~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~ 96 (249)
..||+++|+...+-+.-.+++...+-.-......+|.++.=. .|.. .+++.+-++.++ ..+++..+.|+.....-
T Consensus 3 i~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~-p~~~t~~~W~~~-~p~~FrFsvK~~~~iTH-- 78 (263)
T COG1801 3 IYIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAP-PSPETVLRWAEE-TPDDFRFSVKAPRAITH-- 78 (263)
T ss_pred eEEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCC-CCHHHHHHHHHh-CCCCeEEEEEecccccc--
Confidence 457888887755333322322232333345555677776533 4543 477777888876 67999999999854311
Q ss_pred CcCCCCH---HHHHHHHHHHHHHcCCCccceEEeecCCCC
Q 025658 97 REIRGDP---AYVRAACEASLKRLDIDCIDLYYQHRIDTR 133 (249)
Q Consensus 97 ~~~~~~~---~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~ 133 (249)
.+... ..+.+.+.+-++.|| +.+..+++.-|..-
T Consensus 79 --~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 79 --QRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred --hhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcc
Confidence 11112 344455555566777 58999999998554
No 54
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=70.13 E-value=78 Score=27.98 Aligned_cols=81 Identities=9% Similarity=0.060 Sum_probs=57.9
Q ss_pred ceEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEcCcccHHHHHHHhhcCCeeEEeeccCccCc-CchhhHHHHHHHcC
Q 025658 123 DLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELG 200 (249)
Q Consensus 123 Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~g 200 (249)
++.++-.|-+. +.++.+.+|+++..+. +.|=+-++...+.++++...++++|+.....-- .....+...|+++|
T Consensus 215 ~~~~iEeP~~~----~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~g 290 (365)
T cd03318 215 GVELIEQPVPR----ENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAG 290 (365)
T ss_pred CcceeeCCCCc----ccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcC
Confidence 34455555332 2467788888877665 677777889999999888888899987665431 12348899999999
Q ss_pred CeEEEcc
Q 025658 201 IGIVAYS 207 (249)
Q Consensus 201 i~v~a~s 207 (249)
+.++..+
T Consensus 291 i~~~~~~ 297 (365)
T cd03318 291 IALYGGT 297 (365)
T ss_pred CceeecC
Confidence 9998654
No 55
>PRK07945 hypothetical protein; Provisional
Probab=70.06 E-value=77 Score=27.89 Aligned_cols=151 Identities=17% Similarity=0.111 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhcCCCEEeCcCCcCC-----ChHHHHHHHHh------cCCCCC-CeEEEeecCcccCCCCCcCCCCHHH
Q 025658 38 SDMIALIHHAINSGITLLDTSDIYGP-----HTNEILLGKAL------KGGMRE-RVELATKFGISFADGKREIRGDPAY 105 (249)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~-----g~se~~lg~~l------~~~~r~-~~~i~tK~~~~~~~~~~~~~~~~~~ 105 (249)
....+.+++|.+.|+..+=.++|... +-+...+-+.+ ++.-.+ +|.+..=+...+ ....+.
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~Il~GiE~d~~~-------~g~~~~ 183 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRILTGIEVDILD-------DGSLDQ 183 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEeEecccC-------CCCcch
Confidence 34778999999999999888777431 11122222222 211112 222222222211 111222
Q ss_pred HHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCc---------------ccHHHHHHHhh
Q 025658 106 VRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSE---------------ASASTIRRAHA 170 (249)
Q Consensus 106 i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~---------------~~~~~l~~~~~ 170 (249)
. ++.|+. .||+ +.-+|+... .+..+..+.+.++.+.+.+..+|=-. +..+.+.+++.
T Consensus 184 ~----~~~l~~--~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~ 255 (335)
T PRK07945 184 E----PELLDR--LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACR 255 (335)
T ss_pred h----HHHHHh--CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHH
Confidence 2 233333 4554 666787643 33456678888888888888888431 22233333333
Q ss_pred cCCeeEEeeccCccCcCchhhHHHHHHHcCCeEE
Q 025658 171 VHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIV 204 (249)
Q Consensus 171 ~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~ 204 (249)
... ..+.++.+.....+...+++.|++.|+.++
T Consensus 256 e~g-~~lEINt~~~r~~P~~~il~~a~e~G~~vt 288 (335)
T PRK07945 256 EHG-TAVEINSRPERRDPPTRLLRLALDAGCLFS 288 (335)
T ss_pred HhC-CEEEEeCCCCCCCChHHHHHHHHHcCCeEE
Confidence 221 123333333333456689999999998754
No 56
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=69.86 E-value=68 Score=27.52 Aligned_cols=153 Identities=12% Similarity=0.105 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHhcC-CCEEeC---cCC-----cCCChHHHHHHHHhcCCCCC-CeEEEeecCcccCCCCCcCCCCHHH
Q 025658 36 PESDMIALIHHAINSG-ITLLDT---SDI-----YGPHTNEILLGKALKGGMRE-RVELATKFGISFADGKREIRGDPAY 105 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~G-i~~~Dt---A~~-----Yg~g~se~~lg~~l~~~~r~-~~~i~tK~~~~~~~~~~~~~~~~~~ 105 (249)
+.++..++.+.+-+.| +..||- +++ |..+.+.+.+-+.++.+... ++-|..|+.... +.
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~-----------~~ 170 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV-----------TD 170 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc-----------hh
Confidence 5677888888888998 999976 222 11224556666666652221 577888987321 12
Q ss_pred HHHHHHHHHHHcCCCccceEE-eecC--CCCC----------C------HHHHHHHHHHHHHcCcccEEEcCcc-cHHHH
Q 025658 106 VRAACEASLKRLDIDCIDLYY-QHRI--DTRV----------P------IEVTIGELKKLVEEGKIKYIGLSEA-SASTI 165 (249)
Q Consensus 106 i~~~~~~sL~rLg~~~lDl~~-lh~~--~~~~----------~------~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l 165 (249)
+. .+-+.++..|.+.+++.- ++.. +... . ..-.++.+.++++.=.+--||+... +++..
T Consensus 171 ~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da 249 (301)
T PRK07259 171 IV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDA 249 (301)
T ss_pred HH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 22 344457778877665532 1111 0000 0 0114667777777656888888875 78888
Q ss_pred HHHhhcCCeeEEeeccCccC-cC----chhhHHHHHHHcCC
Q 025658 166 RRAHAVHPITAVQLEWSLWS-RD----VEAEIVPTCRELGI 201 (249)
Q Consensus 166 ~~~~~~~~~~~~q~~~n~~~-~~----~~~~~~~~~~~~gi 201 (249)
.+++..+ .+.+|+---++. +. ...++-.++.++|.
T Consensus 250 ~~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 250 IEFIMAG-ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHHcC-CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 8888755 678876444333 21 22355566666664
No 57
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=68.57 E-value=79 Score=27.46 Aligned_cols=151 Identities=14% Similarity=0.111 Sum_probs=79.5
Q ss_pred CCHHHHHHHHHHHHhcCCCEEeCcCCcCC--ChHHHHHHHHhcCC-CCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHH
Q 025658 35 KPESDMIALIHHAINSGITLLDTSDIYGP--HTNEILLGKALKGG-MRERVELATKFGISFADGKREIRGDPAYVRAACE 111 (249)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g~se~~lg~~l~~~-~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 111 (249)
.+.+++.++++.+.+.|++.|.-...-.. -.-.+++.. +++. ...++.|+|-... +.+. -
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~~-i~~~~~~~~i~itTNG~l---------------l~~~-~ 111 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIAA-LAALPGIRDLALTTNGYL---------------LARR-A 111 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHHH-HHhcCCCceEEEEcCchh---------------HHHH-H
Confidence 56788999999999999988865321100 012223222 3332 1234555554321 1111 2
Q ss_pred HHHHHcCCCccceEEeecCCC--------CCCHHHHHHHHHHHHHcCc----ccEEEcCcccHHHHHHHhhc---CCeeE
Q 025658 112 ASLKRLDIDCIDLYYQHRIDT--------RVPIEVTIGELKKLVEEGK----IKYIGLSEASASTIRRAHAV---HPITA 176 (249)
Q Consensus 112 ~sL~rLg~~~lDl~~lh~~~~--------~~~~~~~~~~l~~l~~~G~----ir~iGvs~~~~~~l~~~~~~---~~~~~ 176 (249)
+.|...|++.+- +-+|..++ ...+++++++++.+++.|. +..+.+-..+.+++.++++. .++.+
T Consensus 112 ~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~v 190 (331)
T PRK00164 112 AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQL 190 (331)
T ss_pred HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCeE
Confidence 334445554432 33444432 2357889999999999885 33444444555555554433 34444
Q ss_pred EeeccCccCcC---------chhhHHHHHHHcCCeE
Q 025658 177 VQLEWSLWSRD---------VEAEIVPTCRELGIGI 203 (249)
Q Consensus 177 ~q~~~n~~~~~---------~~~~~~~~~~~~gi~v 203 (249)
.-++|.+.... ...++++..++.|+.+
T Consensus 191 ~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 226 (331)
T PRK00164 191 RFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTL 226 (331)
T ss_pred EEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcc
Confidence 44444443221 1236777777776543
No 58
>PLN02363 phosphoribosylanthranilate isomerase
Probab=68.22 E-value=19 Score=30.50 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=44.2
Q ss_pred HHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcC-cccHHHHHHHhhcCCeeEEeecc
Q 025658 114 LKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLEW 181 (249)
Q Consensus 114 L~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~ 181 (249)
..++|.|++-+.+........+.+ ....+.+......++.|||. |-+++.+.++++...++++|+.-
T Consensus 63 a~~~GaD~iGfIf~~~SpR~Vs~e-~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLHG 130 (256)
T PLN02363 63 AVEAGADFIGMILWPKSKRSISLS-VAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLHG 130 (256)
T ss_pred HHHcCCCEEEEecCCCCCCcCCHH-HHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 346899999886433222223333 33444443333346789996 78899999998888999999864
No 59
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=68.10 E-value=35 Score=28.59 Aligned_cols=113 Identities=18% Similarity=0.108 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHH--------------------hcCCCCCCeEEEeecCcccCC
Q 025658 35 KPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKA--------------------LKGGMRERVELATKFGISFAD 94 (249)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~--------------------l~~~~r~~~~i~tK~~~~~~~ 94 (249)
.+.++..++.+.+-+.|+.||=|..... +-..+-+. +.+ ....++|+|=.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~---s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~------ 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE---SVDFLEELGVPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGM------ 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH---HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH---HHHHHHHcCCCEEEeccccccCHHHHHHHHH-hCCcEEEECCC------
Confidence 4778899999999999999998876443 33332111 111 23345555433
Q ss_pred CCCcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCC-CCCCHHH-HHHHHHHHHHcCcccEEEcCcccHHHHHH
Q 025658 95 GKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRID-TRVPIEV-TIGELKKLVEEGKIKYIGLSEASASTIRR 167 (249)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~-~~~~~~~-~~~~l~~l~~~G~ir~iGvs~~~~~~l~~ 167 (249)
.+.+.|+++++...++-+ -++.++|... +..+.++ -+..+..|++.=- --||+|.++......
T Consensus 123 ------stl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~~~~ 187 (241)
T PF03102_consen 123 ------STLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGIEAP 187 (241)
T ss_dssp --------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSSHHH
T ss_pred ------CCHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCcHHH
Confidence 356667777666644444 5899999873 3344443 4666666664433 677999988754333
No 60
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=67.87 E-value=47 Score=28.16 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=52.6
Q ss_pred CHH-HHHHHHHHHHhcCCCEEeCcCCcCC-C---hHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHH
Q 025658 36 PES-DMIALIHHAINSGITLLDTSDIYGP-H---TNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAAC 110 (249)
Q Consensus 36 ~~~-~~~~~l~~A~~~Gi~~~DtA~~Yg~-g---~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 110 (249)
+++ +...+.+.|.++|..|+=|+..|+. | ..-+++-+.+++. ...--+..|.. .| =.+.+...+-+
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~-~~~~~vgIKAs----GG----Irt~~~A~~~i 214 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDM-GVAKTVGFKPA----GG----VRTAEDAAQYL 214 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhc-ccCCCeeEEcc----CC----CCCHHHHHHHH
Confidence 445 5889999999999999999999974 4 3335555555431 00111334443 22 14677788888
Q ss_pred HHHHHHcCCCccc
Q 025658 111 EASLKRLDIDCID 123 (249)
Q Consensus 111 ~~sL~rLg~~~lD 123 (249)
+.--+.||.++++
T Consensus 215 ~ag~~~lg~~~~~ 227 (257)
T PRK05283 215 ALADEILGADWAD 227 (257)
T ss_pred HHHHHHhChhhcC
Confidence 8888999988765
No 61
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=67.83 E-value=57 Score=27.20 Aligned_cols=87 Identities=10% Similarity=0.037 Sum_probs=48.4
Q ss_pred HHHcCCCccceEEeecCCCCCC-HHHHHHHHHHHHHcCcccEEEcCc-ccHHHHHHHhhcCCeeEEeeccCccCcC-chh
Q 025658 114 LKRLDIDCIDLYYQHRIDTRVP-IEVTIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQLEWSLWSRD-VEA 190 (249)
Q Consensus 114 L~rLg~~~lDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~ 190 (249)
+..+| +|-+.+|..+.... -.-.|+.+.++.+.-.+.-|.-.. .+.+.+.++.+...++.+.+---+.... .-.
T Consensus 162 ~~~~g---~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~ 238 (253)
T PRK02083 162 VEELG---AGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIG 238 (253)
T ss_pred HHHcC---CCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHH
Confidence 35556 45577776543211 011366777777665566555553 4577888877654444444422221111 234
Q ss_pred hHHHHHHHcCCeE
Q 025658 191 EIVPTCRELGIGI 203 (249)
Q Consensus 191 ~~~~~~~~~gi~v 203 (249)
++++.|++.||.+
T Consensus 239 ~~~~~~~~~~~~~ 251 (253)
T PRK02083 239 ELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHCCCcc
Confidence 8889999988864
No 62
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=66.90 E-value=90 Score=27.48 Aligned_cols=40 Identities=20% Similarity=-0.027 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCcccEEEcCcccHHHHHHHhhcCCeeEEee
Q 025658 140 IGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQL 179 (249)
Q Consensus 140 ~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 179 (249)
++...++++.=.+--+++..++++..+++++....+.+.+
T Consensus 274 ~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 274 PDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAF 313 (338)
T ss_pred hHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEe
Confidence 3444444554455566666666666666666655555543
No 63
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=66.90 E-value=39 Score=28.57 Aligned_cols=101 Identities=22% Similarity=0.133 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEe-ecCCCC-CCHH----HHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhcCCe
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQ-HRIDTR-VPIE----VTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPI 174 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~l-h~~~~~-~~~~----~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 174 (249)
.+.+.+.+..++-+ +=|.+.||+=-- -+|+.. .+.+ .....+..+++.-.+- +.+-+++++.++++++.+..
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 34444444433332 448888888532 234332 1222 2344556666653333 78888999999999987632
Q ss_pred eEEeeccCccCcCchhhHHHHHHHcCCeEEEcc
Q 025658 175 TAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYS 207 (249)
Q Consensus 175 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~s 207 (249)
+-+..+....+ ..+++.++++|+.++...
T Consensus 99 --iINdisg~~~~--~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 99 --IINDVSGGSDD--PAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred --EEEeCCCCCCC--hHHHHHHHHcCCCEEEEC
Confidence 22333444322 488999999999999944
No 64
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=66.66 E-value=8.1 Score=27.71 Aligned_cols=51 Identities=20% Similarity=0.143 Sum_probs=38.9
Q ss_pred CcccHHHHHHHhhcCCeeEEeeccCccCc-CchhhHHHHHHHcCCeEEEccc
Q 025658 158 SEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAYSP 208 (249)
Q Consensus 158 s~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~sp 208 (249)
|.++...+.++++...++++|+.....-- .....+.+.|+++|+.+..++.
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 45778888899888888999987655421 1234899999999999999986
No 65
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=66.34 E-value=41 Score=30.40 Aligned_cols=83 Identities=7% Similarity=-0.015 Sum_probs=60.2
Q ss_pred ceEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEcCcccHHHHHHHhhcCCeeEEeeccCccCc-CchhhHHHHHHHcC
Q 025658 123 DLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELG 200 (249)
Q Consensus 123 Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~g 200 (249)
++.++-.|-+. +.++.+.+|++.-.+. +.|=|-++...+.++++...++++|+.....-- .....+.+.|+.+|
T Consensus 233 ~l~~iEeP~~~----~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~g 308 (404)
T PRK15072 233 RLFWLEDPTPA----ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQ 308 (404)
T ss_pred CCcEEECCCCc----cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcC
Confidence 44555544322 2467788888877665 777777899999999998889999987766431 22448899999999
Q ss_pred CeEEEcccC
Q 025658 201 IGIVAYSPL 209 (249)
Q Consensus 201 i~v~a~spl 209 (249)
+.++.++..
T Consensus 309 i~~~~h~~~ 317 (404)
T PRK15072 309 VRTGSHGPT 317 (404)
T ss_pred CceeeccCc
Confidence 999887543
No 66
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=66.09 E-value=51 Score=29.49 Aligned_cols=84 Identities=18% Similarity=0.087 Sum_probs=59.5
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHc------CcccEEEcCcccHHHHHHHhhcCCeeEEeeccCccCc-CchhhHHHHHH
Q 025658 125 YYQHRIDTRVPIEVTIGELKKLVEE------GKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCR 197 (249)
Q Consensus 125 ~~lh~~~~~~~~~~~~~~l~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~ 197 (249)
+++-.|-+..+.++.++.+.+|.++ +.=-..|=|.++...+.++++....+++|+..+-.-- .....+.+.|+
T Consensus 230 ~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~ 309 (369)
T cd03314 230 LRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCK 309 (369)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHH
Confidence 4555554433333457777777766 3334677777889999999988888999998776432 12448899999
Q ss_pred HcCCeEEEccc
Q 025658 198 ELGIGIVAYSP 208 (249)
Q Consensus 198 ~~gi~v~a~sp 208 (249)
.+|+.++..+.
T Consensus 310 a~Gi~~~~h~~ 320 (369)
T cd03314 310 EHGVGAYLGGS 320 (369)
T ss_pred HcCCcEEEeCC
Confidence 99999998653
No 67
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=65.22 E-value=95 Score=27.11 Aligned_cols=135 Identities=12% Similarity=0.104 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcC----------CcCCC--hHHHHHHHHhcCCC-CCCeEEEeecCcccCCCCCcCCCC
Q 025658 36 PESDMIALIHHAINSGITLLDTSD----------IYGPH--TNEILLGKALKGGM-RERVELATKFGISFADGKREIRGD 102 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~----------~Yg~g--~se~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~ 102 (249)
++++..++.+.+.+.|+..||.=- .+|.. .+...+.+.++... .-++-|+.|+...+ ..+
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~-------~~~ 147 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGW-------APE 147 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccc-------cCC
Confidence 557777777778889999999522 22211 22344444444310 01345777775322 111
Q ss_pred HHHHHHHHHHHHHHcCCCccceEEeecCCCCCCH--HHHHHHHHHHHHcCcccEEEcCc-ccHHHHHHHhhcCCeeEEee
Q 025658 103 PAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPI--EVTIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQL 179 (249)
Q Consensus 103 ~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~ 179 (249)
..... .+-+-++..| +|.+.+|.-...... ...|+.+.++++.=.|--||... .++++..++++....+.+++
T Consensus 148 ~~~~~-~~a~~le~~G---~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 148 HRNCV-EIAQLAEDCG---IQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred cchHH-HHHHHHHHhC---CCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 11111 2334466777 466788865422111 13588888888887788888887 47888888887766777777
Q ss_pred cc
Q 025658 180 EW 181 (249)
Q Consensus 180 ~~ 181 (249)
-=
T Consensus 224 GR 225 (321)
T PRK10415 224 GR 225 (321)
T ss_pred Ch
Confidence 53
No 68
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=65.01 E-value=43 Score=25.49 Aligned_cols=61 Identities=5% Similarity=0.172 Sum_probs=42.9
Q ss_pred CCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHc--CCCccceEEeecCCCCCCHHHHHHHHHHHHH
Q 025658 79 RERVELATKFGISFADGKREIRGDPAYVRAACEASLKRL--DIDCIDLYYQHRIDTRVPIEVTIGELKKLVE 148 (249)
Q Consensus 79 r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rL--g~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~ 148 (249)
|=-+.|+-|++. ......+++.++++++.+ ..+..|++++.......+..+....|.++..
T Consensus 47 RlG~sVSKKvg~---------AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~ 109 (138)
T PRK00730 47 KVGITVSKKFGK---------AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIP 109 (138)
T ss_pred eEEEEEeccccc---------chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHH
Confidence 445777777662 357788888888888776 3456899999998766666666666655553
No 69
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=64.53 E-value=16 Score=27.59 Aligned_cols=25 Identities=40% Similarity=0.635 Sum_probs=21.4
Q ss_pred cCchhhHHHHHHHcCCeEEEcccCc
Q 025658 186 RDVEAEIVPTCRELGIGIVAYSPLG 210 (249)
Q Consensus 186 ~~~~~~~~~~~~~~gi~v~a~spl~ 210 (249)
++.-.++++.|++.||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 3445699999999999999998886
No 70
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=64.47 E-value=78 Score=27.26 Aligned_cols=97 Identities=21% Similarity=0.268 Sum_probs=61.3
Q ss_pred HHHcCCCccceEEeecCCCCCCHHHH-----HHHHHHHHHcCcccEEEcCcccHH-------HHHHHhhcCCeeEEeecc
Q 025658 114 LKRLDIDCIDLYYQHRIDTRVPIEVT-----IGELKKLVEEGKIKYIGLSEASAS-------TIRRAHAVHPITAVQLEW 181 (249)
Q Consensus 114 L~rLg~~~lDl~~lh~~~~~~~~~~~-----~~~l~~l~~~G~ir~iGvs~~~~~-------~l~~~~~~~~~~~~q~~~ 181 (249)
++-++-.++|++.+..+.......+. -+.+.++.++--=|++|+.+.++. ++++..+...+.-+|+
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l-- 132 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKL-- 132 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEe--
Confidence 77778888999998852121222222 246778888888899999987654 3444544444444444
Q ss_pred CccCcC-----ch-hhHHHHHHHcCCeEEEcccCccc
Q 025658 182 SLWSRD-----VE-AEIVPTCRELGIGIVAYSPLGRG 212 (249)
Q Consensus 182 n~~~~~-----~~-~~~~~~~~~~gi~v~a~spl~~G 212 (249)
+...+. .. ..+++.|.++|+.|+.+.....+
T Consensus 133 ~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~ 169 (293)
T COG2159 133 HPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPG 169 (293)
T ss_pred cccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 332221 11 36999999999999986655433
No 71
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=64.26 E-value=80 Score=26.43 Aligned_cols=168 Identities=13% Similarity=-0.013 Sum_probs=80.0
Q ss_pred CcceecccccCCCCCCCCCHHHHHHHHHHHHh-cCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCC
Q 025658 18 SAQGLGCMGMSAFYGPPKPESDMIALIHHAIN-SGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGK 96 (249)
Q Consensus 18 s~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~ 96 (249)
|+|-+||..+. +.+ ++..|++ +|...+=.|----+-.....-...+.-++++.+.+.--..
T Consensus 9 SRL~lGTgky~-------s~~----~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i~~~~~~lLPNTa------- 70 (247)
T PF05690_consen 9 SRLILGTGKYP-------SPE----VMREAIEASGAEVVTVALRRVNLGSKPGGDNILDYIDRSGYTLLPNTA------- 70 (247)
T ss_dssp -SEEEE-STSS-------SHH----HHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCTTCCTSEEEEE-T-------
T ss_pred cceEEecCCCC-------CHH----HHHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHhcccCCEECCcCC-------
Confidence 78999997762 333 4555554 3666554442111000000001222334445554432221
Q ss_pred CcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCC-CHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhcCCee
Q 025658 97 REIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRV-PIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPIT 175 (249)
Q Consensus 97 ~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~ 175 (249)
...+.+.-.+..+-+++-++++.|=+=.+..+.... +..+++++-+.|+++|-+-.- .++-++-...++.+.+ ..
T Consensus 71 --Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlP-Y~~~D~v~akrL~d~G-ca 146 (247)
T PF05690_consen 71 --GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLP-YCTDDPVLAKRLEDAG-CA 146 (247)
T ss_dssp --T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEE-EE-S-HHHHHHHHHTT--S
T ss_pred --CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEee-cCCCCHHHHHHHHHCC-CC
Confidence 246778888888888999998887776666655443 467899999999999975422 2233333333443332 23
Q ss_pred EEeeccCccCcC----chhhHHHHHHHcCCeEEEcc
Q 025658 176 AVQLEWSLWSRD----VEAEIVPTCRELGIGIVAYS 207 (249)
Q Consensus 176 ~~q~~~n~~~~~----~~~~~~~~~~~~gi~v~a~s 207 (249)
.++---+++--+ ....+-..+++.+|.|+.-.
T Consensus 147 avMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDA 182 (247)
T PF05690_consen 147 AVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDA 182 (247)
T ss_dssp EBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES
T ss_pred EEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeC
Confidence 333322222111 11133344556688877643
No 72
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=63.38 E-value=37 Score=29.16 Aligned_cols=102 Identities=11% Similarity=0.039 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhcCCeeEEeec
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLE 180 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~ 180 (249)
.+.+.. ..+-+.|.++|+++|.+-.+..|...-...+.++.+..+.+...++...+. .+...++.+.+.+ ++.+.+-
T Consensus 23 ~s~e~k-~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g-~~~v~i~ 99 (287)
T PRK05692 23 IPTADK-IALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAG-ADEVAVF 99 (287)
T ss_pred cCHHHH-HHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcC-CCEEEEE
Confidence 444443 346677999999999987555554222233446777777655556655554 4778888887752 2333332
Q ss_pred cCcc--------CcCc------hhhHHHHHHHcCCeEEE
Q 025658 181 WSLW--------SRDV------EAEIVPTCRELGIGIVA 205 (249)
Q Consensus 181 ~n~~--------~~~~------~~~~~~~~~~~gi~v~a 205 (249)
++.. .... -.+.+++++++|+.+.+
T Consensus 100 ~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 100 ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 2221 1111 13789999999998864
No 73
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=63.34 E-value=32 Score=28.17 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcC-CChH---HHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHH
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYG-PHTN---EILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACE 111 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-~g~s---e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 111 (249)
++++...+.+.+.++|..|+=|+..|+ .|.+ -+.+.+.++. + +-.|.. .| . .+.+...+-++
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~----~--v~IKaa----GG---i-rt~~~a~~~i~ 195 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGD----T--IGVKAS----GG---V-RTAEDAIAMIE 195 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhcc----C--CeEEEe----CC---C-CCHHHHHHHHH
Confidence 557788999999999999999998886 3422 2445555542 1 333433 22 1 26788888888
Q ss_pred HHHHHcCCCc
Q 025658 112 ASLKRLDIDC 121 (249)
Q Consensus 112 ~sL~rLg~~~ 121 (249)
.--.|+|++.
T Consensus 196 aGa~riGts~ 205 (211)
T TIGR00126 196 AGASRIGASA 205 (211)
T ss_pred HhhHHhCcch
Confidence 8999999875
No 74
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=62.90 E-value=89 Score=25.99 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcC
Q 025658 36 PESDMIALIHHAINSGITLLDTSD 59 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~ 59 (249)
.+|.....+++|++.|+..|++-=
T Consensus 20 ~pENT~~Af~~A~~~G~d~vE~DV 43 (249)
T PRK09454 20 APENTLAAIDVGARYGHRMIEFDA 43 (249)
T ss_pred CChHHHHHHHHHHHcCCCEEEEEe
Confidence 457899999999999999998743
No 75
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=62.57 E-value=51 Score=31.67 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=46.6
Q ss_pred HHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcC-cccHHHHHHHhhcCCeeEEeeccC
Q 025658 114 LKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLEWS 182 (249)
Q Consensus 114 L~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n 182 (249)
...+|.|++-+.+........+.+.....+.+......++.|||- |-+++.+.++.+...++++|+.-+
T Consensus 19 a~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~ 88 (610)
T PRK13803 19 AVDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGA 88 (610)
T ss_pred HHHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 356899998887555433334444413333333333457889996 788999999998899999998654
No 76
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=61.94 E-value=36 Score=26.44 Aligned_cols=77 Identities=12% Similarity=0.087 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHH
Q 025658 33 PPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEA 112 (249)
Q Consensus 33 ~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 112 (249)
..++++...-++++|-+.|+.+|=.|+.|| .+-..+-+.+.. .=++++.|--.... ..+...+.+.+++
T Consensus 9 ~eNT~~tle~a~erA~elgik~~vVAS~tG--~tA~k~lemveg--~lkvVvVthh~Gf~-------e~g~~e~~~E~~~ 77 (186)
T COG1751 9 KENTDETLEIAVERAKELGIKHIVVASSTG--YTALKALEMVEG--DLKVVVVTHHAGFE-------EKGTQEMDEEVRK 77 (186)
T ss_pred ccchHHHHHHHHHHHHhcCcceEEEEeccc--HHHHHHHHhccc--CceEEEEEeecccc-------cCCceecCHHHHH
Confidence 345666677888899999999999999999 344444444432 12456555544332 2334456777888
Q ss_pred HHHHcCCC
Q 025658 113 SLKRLDID 120 (249)
Q Consensus 113 sL~rLg~~ 120 (249)
-|+..|.+
T Consensus 78 ~L~erGa~ 85 (186)
T COG1751 78 ELKERGAK 85 (186)
T ss_pred HHHHcCce
Confidence 89998853
No 77
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=61.64 E-value=1.2e+02 Score=26.98 Aligned_cols=123 Identities=13% Similarity=0.153 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHHHHhc---CCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHH
Q 025658 35 KPESDMIALIHHAINS---GITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACE 111 (249)
Q Consensus 35 ~~~~~~~~~l~~A~~~---Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 111 (249)
.+.++..+++....+. =+-.+|..+..+. -...+-+.+. ...-++|.+|.-..+ .....+.+.+.++
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s--~~~~l~~~~~--~~piilV~NK~DLl~------k~~~~~~~~~~l~ 117 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGS--LIPELKRFVG--GNPVLLVGNKIDLLP------KSVNLSKIKEWMK 117 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCC--ccHHHHHHhC--CCCEEEEEEchhhCC------CCCCHHHHHHHHH
Confidence 4556677766655432 2344575444431 1122233333 345688999987543 1234566777777
Q ss_pred HHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHH
Q 025658 112 ASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRA 168 (249)
Q Consensus 112 ~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 168 (249)
+.++.+|....+++.+.. -....+++.++.+.++.+.+.+-.+|.+|.....|...
T Consensus 118 ~~~k~~g~~~~~i~~vSA-k~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~ 173 (360)
T TIGR03597 118 KRAKELGLKPVDIILVSA-KKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINK 173 (360)
T ss_pred HHHHHcCCCcCcEEEecC-CCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHH
Confidence 777788865446666544 34466888999998887777899999999998776544
No 78
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=61.05 E-value=1.3e+02 Score=27.12 Aligned_cols=36 Identities=14% Similarity=0.285 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcC
Q 025658 37 ESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG 76 (249)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~ 76 (249)
+.+..++|+..+++|+- ...|++..--+.+-.+.++
T Consensus 40 pp~i~~Al~~rvdhGvf----GY~~~~~~~~~ai~~w~~~ 75 (388)
T COG1168 40 PPEIIEALRERVDHGVF----GYPYGSDELYAAIAHWFKQ 75 (388)
T ss_pred CHHHHHHHHHHHhcCCC----CCCCCCHHHHHHHHHHHHH
Confidence 35689999999999953 3334422222444555554
No 79
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=60.80 E-value=77 Score=26.64 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCC-----CCCCHHHHHHHHHHHHHc-CcccEEEcC---cccHHHHHHHhhc
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRID-----TRVPIEVTIGELKKLVEE-GKIKYIGLS---EASASTIRRAHAV 171 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~-----~~~~~~~~~~~l~~l~~~-G~ir~iGvs---~~~~~~l~~~~~~ 171 (249)
.+.+... .+-+.|.++|++++.+-+..... ...+....++.++.+++. +.++...++ ....+.++.+.+.
T Consensus 19 ~~~~~k~-~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~ 97 (263)
T cd07943 19 FTLEQVR-AIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAADL 97 (263)
T ss_pred cCHHHHH-HHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHHc
Confidence 4444444 45556889999998887543211 001112356666666443 345655554 3345667666654
Q ss_pred CCeeEEeeccCccCcCchhhHHHHHHHcCCeEEEc
Q 025658 172 HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 206 (249)
Q Consensus 172 ~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 206 (249)
.++.+.+.+..-+...-.+.+++++++|+.+...
T Consensus 98 -g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 98 -GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred -CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 3455555444333223347888888888766543
No 80
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=59.85 E-value=51 Score=26.45 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=29.3
Q ss_pred HHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHH
Q 025658 113 SLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIR 166 (249)
Q Consensus 113 sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~ 166 (249)
....++ +|.++||..++ .+..+.+.+......++.+|++......+.
T Consensus 68 ia~~~~---~d~Vqlhg~e~----~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~ 114 (203)
T cd00405 68 IAEELG---LDVVQLHGDES----PEYCAQLRARLGLPVIKAIRVKDEEDLEKA 114 (203)
T ss_pred HHHhcC---CCEEEECCCCC----HHHHHHHHhhcCCcEEEEEecCChhhHHHh
Confidence 344455 68899998642 123344444334568899999987665543
No 81
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=59.61 E-value=1.2e+02 Score=26.40 Aligned_cols=85 Identities=8% Similarity=0.022 Sum_probs=60.3
Q ss_pred cceEEeecCCCCCCHHHHHHHHHHHHHcCcc-cEEEcCcccHHHHHHHhhcCCeeEEeeccCccCcCchhhHHHHHHHcC
Q 025658 122 IDLYYQHRIDTRVPIEVTIGELKKLVEEGKI-KYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELG 200 (249)
Q Consensus 122 lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~g 200 (249)
.++.++-.|-+.. .++.+.+|.++-.+ -+.|=|-++...+..+++....+++|+..+..-- -..+.+.|+.+|
T Consensus 192 ~~i~~iEqP~~~~----~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GG--i~~~~~~a~~~g 265 (320)
T PRK02714 192 GKIEFIEQPLPPD----QFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGS--PSRLRQFCQQHP 265 (320)
T ss_pred CCccEEECCCCcc----cHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCC--HHHHHHHHHHhC
Confidence 4666666664332 45666777765544 4677777888899998888778888887776543 237789999999
Q ss_pred CeEEEcccCccc
Q 025658 201 IGIVAYSPLGRG 212 (249)
Q Consensus 201 i~v~a~spl~~G 212 (249)
|.++..+.+..|
T Consensus 266 i~~~~~~~~es~ 277 (320)
T PRK02714 266 LDAVFSSVFETA 277 (320)
T ss_pred CCEEEEechhhH
Confidence 999987655443
No 82
>PRK14017 galactonate dehydratase; Provisional
Probab=59.55 E-value=1.3e+02 Score=26.84 Aligned_cols=154 Identities=11% Similarity=0.108 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCC-----cCCC---hHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHH
Q 025658 36 PESDMIALIHHAINSGITLLDTSDI-----YGPH---TNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVR 107 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~-----Yg~g---~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~ 107 (249)
+.++..+.++.+.+.|++.|=.--. ++.. ......=+++++.-.+++.|..=.- ..++.+.
T Consensus 124 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN---------~~w~~~~-- 192 (382)
T PRK14017 124 RPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGVDFH---------GRVHKPM-- 192 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCCCCeEEEECC---------CCCCHHH--
Confidence 4466667778888899998865310 1100 1112222344431122333322211 1244433
Q ss_pred HHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEcCcccHHHHHHHhhcCCeeEEeeccCccCc
Q 025658 108 AACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSR 186 (249)
Q Consensus 108 ~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~ 186 (249)
..+-+++|. .+++.++-.|-... .++.+.+|++...+- +.|=|.++...+..+++...++++|+..+..--
T Consensus 193 --A~~~~~~l~--~~~~~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GG 264 (382)
T PRK14017 193 --AKVLAKELE--PYRPMFIEEPVLPE----NAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGG 264 (382)
T ss_pred --HHHHHHhhc--ccCCCeEECCCCcC----CHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCC
Confidence 233334442 24555666654322 356788888887665 677778899999999988888999987765431
Q ss_pred -CchhhHHHHHHHcCCeEEEccc
Q 025658 187 -DVEAEIVPTCRELGIGIVAYSP 208 (249)
Q Consensus 187 -~~~~~~~~~~~~~gi~v~a~sp 208 (249)
.....+.+.|+++||.++.++.
T Consensus 265 it~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 265 ITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred HHHHHHHHHHHHHcCCeEeecCC
Confidence 2244899999999999998764
No 83
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=59.21 E-value=10 Score=33.74 Aligned_cols=184 Identities=17% Similarity=0.068 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcCCChHH---HHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHH
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNE---ILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEA 112 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se---~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 112 (249)
+.++..+.++.|.+.|++.+=|+-+..-+..+ ..+.+.++......+.|+.=+.+..-.. ...+.+.+ .
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~---lg~~~~dl-----~ 83 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKK---LGISYDDL-----S 83 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHT---TT-BTTBT-----H
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHH---cCCCHHHH-----H
Confidence 56889999999999999999999877532112 2222222222334566665554221000 00111111 1
Q ss_pred HHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhcCC-eeEEeeccCccCcC----
Q 025658 113 SLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHP-ITAVQLEWSLWSRD---- 187 (249)
Q Consensus 113 sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~q~~~n~~~~~---- 187 (249)
.++.||++ .+=| |...+. +...+|-++|.--.+=.|+.+.+.+..+.+..+ ++-+..-.|...+.
T Consensus 84 ~~~~lGi~---~lRl---D~Gf~~----~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TGL 153 (357)
T PF05913_consen 84 FFKELGID---GLRL---DYGFSG----EEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTGL 153 (357)
T ss_dssp HHHHHT-S---EEEE---SSS-SC----HHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-SB
T ss_pred HHHHcCCC---EEEE---CCCCCH----HHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCCC
Confidence 24445533 2222 332222 233344444777788888888888988877643 33333344444432
Q ss_pred ---chhhHHHHHHHcCCeEEEcccCccccCCCCCCCCCCCChhhHhhhccchHHH
Q 025658 188 ---VEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQVCKSTKQL 239 (249)
Q Consensus 188 ---~~~~~~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (249)
.-.+.-.+.++.|+.+.|+-|-..+...+-++ ..|.-+.+|...|..+.+
T Consensus 154 s~~~f~~~n~~~k~~gi~~~AFI~g~~~~rGPl~~--GLPTlE~hR~~~p~~aa~ 206 (357)
T PF05913_consen 154 SEEFFIEKNQLLKEYGIKTAAFIPGDENKRGPLYE--GLPTLEKHRNLPPYAAAL 206 (357)
T ss_dssp -HHHHHHHHHHHHHTT-EEEEEE--SSS-BTTT-S----BSBGGGTTS-HHHHHH
T ss_pred CHHHHHHHHHHHHHCCCcEEEEecCCCcccCCccC--CCCccHHHcCCCHHHHHH
Confidence 11256678889999999999987433332111 223334566655555443
No 84
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=58.99 E-value=1.1e+02 Score=26.96 Aligned_cols=71 Identities=15% Similarity=0.111 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCcc-cEEEcCcccHHHHHHHhhcCCeeEEeeccCccCcCchhhHHHHHHHcCCeEEEcccCccc
Q 025658 140 IGELKKLVEEGKI-KYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRG 212 (249)
Q Consensus 140 ~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G 212 (249)
++.+.+++++-.+ -+.|=|-++...+.+++.....+++|+..+.+-- -.++++.|+++||.++..+.+..+
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GG--it~~lkiA~~~gi~v~v~s~~es~ 244 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGG--VRAALDIAEQIGLPVVVSSALDTS 244 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCC--HHHHHHHHHHcCCcEEEeCCcccH
Confidence 5566666655434 3555556778888888887888999988776543 247888999999999987766544
No 85
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=58.98 E-value=1e+02 Score=25.42 Aligned_cols=150 Identities=12% Similarity=0.030 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCccc--------CCCCCcCCCCHHHHH
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISF--------ADGKREIRGDPAYVR 107 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~--------~~~~~~~~~~~~~i~ 107 (249)
+.+++.+++ +.|+..+..+...- .+-..+.+..+....+++.++.-+.... ..+......+.
T Consensus 82 s~~d~~~~l----~~G~~~v~ig~~~~--~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~---- 151 (243)
T cd04731 82 SLEDARRLL----RAGADKVSINSAAV--ENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDA---- 151 (243)
T ss_pred CHHHHHHHH----HcCCceEEECchhh--hChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCH----
Confidence 334444444 46888887765543 2445555555544334455443211000 00000001111
Q ss_pred HHHHHHHHHcCCCccceEEeecCCCCCCHH-HHHHHHHHHHHcCcccEEEcCc-ccHHHHHHHhhcCCeeEEeeccCccC
Q 025658 108 AACEASLKRLDIDCIDLYYQHRIDTRVPIE-VTIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQLEWSLWS 185 (249)
Q Consensus 108 ~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~-~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~n~~~ 185 (249)
..+-+.++.+| +|.+.+|..+...... -.|+.+.++++.-.+.-+.... .+++.+.++++...++.+.+---+..
T Consensus 152 ~~~~~~l~~~G---~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~ 228 (243)
T cd04731 152 VEWAKEVEELG---AGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHF 228 (243)
T ss_pred HHHHHHHHHCC---CCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHc
Confidence 12234455666 4567777654422111 1355666666655555555554 35677777776545555554322222
Q ss_pred cC-chhhHHHHHHH
Q 025658 186 RD-VEAEIVPTCRE 198 (249)
Q Consensus 186 ~~-~~~~~~~~~~~ 198 (249)
.. .-.++.+.|++
T Consensus 229 ~~~~~~~~~~~~~~ 242 (243)
T cd04731 229 GEYTIAELKEYLAE 242 (243)
T ss_pred CCCCHHHHHHHHhh
Confidence 21 12255566554
No 86
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=58.15 E-value=85 Score=28.89 Aligned_cols=69 Identities=16% Similarity=0.128 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHcCcccE----EEcCcccHHHHHHHhhc---CCeeEEeeccCccCcCchhhHHHHHHHcCCeEE
Q 025658 134 VPIEVTIGELKKLVEEGKIKY----IGLSEASASTIRRAHAV---HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIV 204 (249)
Q Consensus 134 ~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~ 204 (249)
...++..++++.+++.|.--. +|+-..+.+.+.+.++. ..++. +.++.+..-+..++.+.+++.|.-..
T Consensus 320 ~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~--~~~~~l~P~PGT~l~~~~~~~g~~~~ 395 (472)
T TIGR03471 320 LTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHT--IQVSLAAPYPGTELYDQAKQNGWITQ 395 (472)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCc--eeeeecccCCCcHHHHHHHHCCCcCC
Confidence 456778889999999986532 36667777777665543 33333 34566666667799999999986443
No 87
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=57.49 E-value=1e+02 Score=24.95 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCC
Q 025658 36 PESDMIALIHHAINSGITLLDTSDI 60 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~ 60 (249)
.+|....+++.|++.|+..|++-=.
T Consensus 11 ~pENT~~af~~A~~~gad~iE~Dv~ 35 (229)
T cd08562 11 APENTLAAFRAAAELGVRWVEFDVK 35 (229)
T ss_pred CCchHHHHHHHHHHcCCCEEEEEEe
Confidence 3477889999999999999987443
No 88
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=57.49 E-value=52 Score=28.97 Aligned_cols=147 Identities=18% Similarity=0.102 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcC-CCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHH
Q 025658 38 SDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG-GMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKR 116 (249)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~-~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~r 116 (249)
++..+.+..+.+.|++.|=.-- +.....+.+ +++++ .+ ++ |+....+. .++.+... .+++
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d~~~l-~~vr~~~g--~~----~l~lDaN~-----~~~~~~a~-----~~~~ 199 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWDVEPL-KAVRERFP--DI----PLMADANS-----AYTLADIP-----LLKR 199 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHHHHHH-HHHHHHCC--CC----eEEEECCC-----CCCHHHHH-----HHHH
Confidence 5566777778888988763321 111222332 44443 22 22 22222211 24443321 2344
Q ss_pred cCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcc-cEEEcCcccHHHHHHHhhcCCeeEEeeccCccCc-CchhhHHH
Q 025658 117 LDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKI-KYIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIVP 194 (249)
Q Consensus 117 Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~ 194 (249)
|. ..++.++-.|-. .+.++.+.+++++-.+ -+.|=|.++.+.+..+++...++++|+..+..-- .....+..
T Consensus 200 l~--~~~i~~iEeP~~----~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~ 273 (354)
T cd03317 200 LD--EYGLLMIEQPLA----ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHD 273 (354)
T ss_pred hh--cCCccEEECCCC----hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHH
Confidence 42 235555555533 2246677777766443 4777778999999999988888999988765432 12348899
Q ss_pred HHHHcCCeEEEcccC
Q 025658 195 TCRELGIGIVAYSPL 209 (249)
Q Consensus 195 ~~~~~gi~v~a~spl 209 (249)
.|+.+|+.++..+.+
T Consensus 274 ~A~~~gi~~~~g~~~ 288 (354)
T cd03317 274 LCQEHGIPVWCGGML 288 (354)
T ss_pred HHHHcCCcEEecCcc
Confidence 999999999876544
No 89
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=57.46 E-value=1.3e+02 Score=26.17 Aligned_cols=153 Identities=17% Similarity=0.132 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHH
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLK 115 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 115 (249)
++++..+.++.+.+.|++.|=.-- +. ..+...=+++++.- .++ ++....+. .++.+..+ . ++
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~-~~d~~~v~~vr~~~-~~~----~l~vDaN~-----~~~~~~a~--~---~~ 193 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP-QIMHQLVKLRRLRF-PQI----PLVIDANE-----SYDLQDFP--R---LK 193 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC-chhHHHHHHHHHhC-CCC----cEEEECCC-----CCCHHHHH--H---HH
Confidence 446677777888899999874321 11 12223334555421 232 22222211 24454432 1 33
Q ss_pred HcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEcCcccHHHHHHHhhcCCeeEEeeccCccCc-CchhhHH
Q 025658 116 RLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIV 193 (249)
Q Consensus 116 rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~ 193 (249)
+|. ..++.++-.|-. .+.++.+.+++++-.+. +.|=|.++...+..+++...++++|+..+..-. .....+.
T Consensus 194 ~l~--~~~~~~iEeP~~----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~ 267 (324)
T TIGR01928 194 ELD--RYQLLYIEEPFK----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAI 267 (324)
T ss_pred HHh--hCCCcEEECCCC----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHH
Confidence 332 235555555532 23567788888876664 778888999999999988888999987765432 1234889
Q ss_pred HHHHHcCCeEEEcccCccc
Q 025658 194 PTCRELGIGIVAYSPLGRG 212 (249)
Q Consensus 194 ~~~~~~gi~v~a~spl~~G 212 (249)
..|+++|+.++..+.+..|
T Consensus 268 ~~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 268 ETCREHGAKVWIGGMLETG 286 (324)
T ss_pred HHHHHcCCeEEEcceEccc
Confidence 9999999999987665554
No 90
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=57.25 E-value=1.4e+02 Score=26.54 Aligned_cols=94 Identities=11% Similarity=-0.044 Sum_probs=46.0
Q ss_pred EEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccH
Q 025658 83 ELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASA 162 (249)
Q Consensus 83 ~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~ 162 (249)
+|..|+.............+.+..-..+-+-|+..|+|++++-.-++... .... ....+++++.=.+--+++..+++
T Consensus 227 ~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~-~~~~--~~~~~~ik~~~~~pv~~~G~~~~ 303 (362)
T PRK10605 227 RIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGG-EPYS--DAFREKVRARFHGVIIGAGAYTA 303 (362)
T ss_pred eEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCC-cccc--HHHHHHHHHHCCCCEEEeCCCCH
Confidence 48889875320000001134443223444556777877777643222111 1111 11123333322233444455689
Q ss_pred HHHHHHhhcCCeeEEee
Q 025658 163 STIRRAHAVHPITAVQL 179 (249)
Q Consensus 163 ~~l~~~~~~~~~~~~q~ 179 (249)
+..+++++.+..+.+-+
T Consensus 304 ~~ae~~i~~G~~D~V~~ 320 (362)
T PRK10605 304 EKAETLIGKGLIDAVAF 320 (362)
T ss_pred HHHHHHHHcCCCCEEEE
Confidence 99999988877676654
No 91
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=57.13 E-value=91 Score=26.29 Aligned_cols=135 Identities=15% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCccceEEee-cCCCCCCHHHHHHHHHHHHH-cCcccEEEcCcccHHHHHHHhhcCC---eeEEeecc
Q 025658 107 RAACEASLKRLDIDCIDLYYQH-RIDTRVPIEVTIGELKKLVE-EGKIKYIGLSEASASTIRRAHAVHP---ITAVQLEW 181 (249)
Q Consensus 107 ~~~~~~sL~rLg~~~lDl~~lh-~~~~~~~~~~~~~~l~~l~~-~G~ir~iGvs~~~~~~l~~~~~~~~---~~~~q~~~ 181 (249)
+..+-+.|.++|++++.+-..- +++ .|+.++.+.+ ...++..+++......++.+.+... ++.+.+-+
T Consensus 22 k~~i~~~L~~~Gv~~iEvg~~~~~~~-------~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~~~~i~i~~ 94 (268)
T cd07940 22 KLEIARQLDELGVDVIEAGFPAASPG-------DFEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAKVDRIHTFI 94 (268)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHH-------HHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCCCCEEEEEe
Q ss_pred CccCc--------------CchhhHHHHHHHcCCeEEEcccCccccCCCCC-------------------CCCCCCChhh
Q 025658 182 SLWSR--------------DVEAEIVPTCRELGIGIVAYSPLGRGFFSSGP-------------------KLVESFSKED 228 (249)
Q Consensus 182 n~~~~--------------~~~~~~~~~~~~~gi~v~a~spl~~G~l~~~~-------------------~~~~~~~~~~ 228 (249)
++.+. ..-.+.++.++++|+.+. +++...+..+..+ ...-...+.+
T Consensus 95 ~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~ 173 (268)
T cd07940 95 ATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE-FSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEE 173 (268)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE-EeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHH
Q ss_pred HhhhccchHHHHh---cccceeeC
Q 025658 229 FRQVCKSTKQLLA---FGMNYMCI 249 (249)
Q Consensus 229 ~~~~~~~~~~~~~---~~~~~~~~ 249 (249)
.........+.+. +-+.||||
T Consensus 174 v~~lv~~l~~~~~~~~i~l~~H~H 197 (268)
T cd07940 174 FGELIKKLKENVPNIKVPISVHCH 197 (268)
T ss_pred HHHHHHHHHHhCCCCceeEEEEec
No 92
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=56.96 E-value=1.2e+02 Score=25.51 Aligned_cols=103 Identities=18% Similarity=0.108 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEe-ecCCCC-----CCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhcCCe
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQ-HRIDTR-----VPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPI 174 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~l-h~~~~~-----~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 174 (249)
.+.+.+.+..++-+ .-|.+.||+=-- -+|+.. ...+.....++.+++.-.+ -|.+-+++++.++++++.+.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~- 97 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGA- 97 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCC-
Confidence 35566655544443 558888988643 234321 1123355666666655333 37888999999999998763
Q ss_pred eEEeeccCccCcCchhhHHHHHHHcCCeEEEcccC
Q 025658 175 TAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPL 209 (249)
Q Consensus 175 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl 209 (249)
.+-+..+....+ .++++.+++.|+.++....-
T Consensus 98 -~iINdis~~~~~--~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 98 -DIINDVSGGRGD--PEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred -CEEEeCCCCCCC--hHHHHHHHHcCCCEEEECcC
Confidence 233333443321 48899999999998887643
No 93
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=56.61 E-value=1e+02 Score=27.49 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCC------------CCH-H---HH-HHHHHHHHHcCcccEEEcCcccHH
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR------------VPI-E---VT-IGELKKLVEEGKIKYIGLSEASAS 163 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~------------~~~-~---~~-~~~l~~l~~~G~ir~iGvs~~~~~ 163 (249)
.+.+.+++.++..+ .|+.+++.++.+.--... .+- + +. ..+.+.|.+.|. ..+++|||...
T Consensus 167 qt~~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa~~ 244 (370)
T PRK06294 167 QSLSDFIVDLHQAI-TLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYAKP 244 (370)
T ss_pred CCHHHHHHHHHHHH-ccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-CeeeeeeeeCC
Confidence 57777888777766 478888888887532110 011 1 12 234555666776 45778887653
No 94
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=55.08 E-value=1.1e+02 Score=24.72 Aligned_cols=134 Identities=10% Similarity=0.053 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCc----------CCcCCC--hHHHHHHHHhcCCCC-CCeEEEeecCcccCCCCCcCCCC
Q 025658 36 PESDMIALIHHAINSGITLLDTS----------DIYGPH--TNEILLGKALKGGMR-ERVELATKFGISFADGKREIRGD 102 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg~g--~se~~lg~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~ 102 (249)
+.++..++.+.+.++|+..||-- ..||.. ...+.+-+.++.+.. -.+-+..|+...+ ...
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~-------~~~ 137 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGW-------DDE 137 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeecc-------CCc
Confidence 55778888899999999999863 235421 233444444444211 1145666764322 111
Q ss_pred HHHHHHHHHHHHHHcCCCccceEEeecCCCCC-C-HHHHHHHHHHHHHcCcccEEEcCcc-cHHHHHHHhhcCCeeEEee
Q 025658 103 PAYVRAACEASLKRLDIDCIDLYYQHRIDTRV-P-IEVTIGELKKLVEEGKIKYIGLSEA-SASTIRRAHAVHPITAVQL 179 (249)
Q Consensus 103 ~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~-~-~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 179 (249)
+...+ +-+.++..|+ |.+.+|...... . -...|+.+.++++.-.+--++.... +.+++.++++....+.+++
T Consensus 138 -~~~~~-~~~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~i 212 (231)
T cd02801 138 -EETLE-LAKALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMI 212 (231)
T ss_pred -hHHHH-HHHHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEE
Confidence 12222 3334555674 556777653211 1 1124677777777766766666654 6777777777655666665
Q ss_pred cc
Q 025658 180 EW 181 (249)
Q Consensus 180 ~~ 181 (249)
--
T Consensus 213 gr 214 (231)
T cd02801 213 GR 214 (231)
T ss_pred cH
Confidence 43
No 95
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=54.45 E-value=1.1e+02 Score=24.62 Aligned_cols=70 Identities=11% Similarity=0.153 Sum_probs=39.3
Q ss_pred HHHHHH-HHHHHcCcccEEEcCcccHHHHHHHhhcCC-eeEEe-ec-------------cCccCcCchhhHHHHHHHcCC
Q 025658 138 VTIGEL-KKLVEEGKIKYIGLSEASASTIRRAHAVHP-ITAVQ-LE-------------WSLWSRDVEAEIVPTCRELGI 201 (249)
Q Consensus 138 ~~~~~l-~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~q-~~-------------~n~~~~~~~~~~~~~~~~~gi 201 (249)
+.++.+ ..+.+.|.-..+=++.|+.+.+..+.+..| +.... .. +++-......++++.++++|+
T Consensus 112 ~~~~~v~~~l~~~~~~~~v~v~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~ 191 (220)
T cd08579 112 DLVEKFVKLYKQNLIENQHQVHSLDYRVIEKVKKLDPKIKTGYILPFNIGNLPKTNVDFYSIEYSTLNKEFIRQAHQNGK 191 (220)
T ss_pred HHHHHHHHHHHHcCCCcCeEEEeCCHHHHHHHHHHCCCCeEEEEEecccCcccccCceEEeeehhhcCHHHHHHHHHCCC
Confidence 344433 334455655666677788888877655322 11100 00 011111123488999999999
Q ss_pred eEEEcc
Q 025658 202 GIVAYS 207 (249)
Q Consensus 202 ~v~a~s 207 (249)
.|.+|.
T Consensus 192 ~v~~wt 197 (220)
T cd08579 192 KVYVWT 197 (220)
T ss_pred EEEEEc
Confidence 999996
No 96
>PLN00191 enolase
Probab=54.43 E-value=1.1e+02 Score=28.25 Aligned_cols=96 Identities=10% Similarity=0.055 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEc-C-cccHHHHHHHhhcCCeeEEee
Q 025658 102 DPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGL-S-EASASTIRRAHAVHPITAVQL 179 (249)
Q Consensus 102 ~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGv-s-~~~~~~l~~~~~~~~~~~~q~ 179 (249)
+++...+-++..+++ .++.++-.|-.. +.|+.+.+|.++.++.-+|= + ..+++.+.++++....+++++
T Consensus 296 s~~e~i~~~~~L~~~-----y~I~~IEDPl~~----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~i 366 (457)
T PLN00191 296 SGDELIDLYKEFVSD-----YPIVSIEDPFDQ----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLL 366 (457)
T ss_pred CHHHHHHHHHHHhhc-----CCcEEEECCCCc----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEe
Confidence 555554444444332 356777777443 35777788888888877772 2 356888999998888899998
Q ss_pred ccCccCc-CchhhHHHHHHHcCCeEEEc
Q 025658 180 EWSLWSR-DVEAEIVPTCRELGIGIVAY 206 (249)
Q Consensus 180 ~~n~~~~-~~~~~~~~~~~~~gi~v~a~ 206 (249)
..|-+-- ....++.+.|+++|+.++.-
T Consensus 367 Kl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 367 KVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred cccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 8886542 23348899999999999763
No 97
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=54.00 E-value=71 Score=26.17 Aligned_cols=97 Identities=16% Similarity=0.111 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhh---cCCeeEE
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHA---VHPITAV 177 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~---~~~~~~~ 177 (249)
.+.+... .+-+.|.++|+++|++- .|.....-.+.++.+.+.... .+-.+++....+.++.+.+ ...++.+
T Consensus 11 ~~~~~k~-~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEEKL-EIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHHHH-HHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHHHH-HHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 4444444 45566999999888887 332222223445555555555 4445555566666666443 2334444
Q ss_pred eeccCccC--------------cCchhhHHHHHHHcCCeE
Q 025658 178 QLEWSLWS--------------RDVEAEIVPTCRELGIGI 203 (249)
Q Consensus 178 q~~~n~~~--------------~~~~~~~~~~~~~~gi~v 203 (249)
.+..+..+ ...-.+.++++++.|..+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 44433322 111237788999999888
No 98
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=53.72 E-value=96 Score=25.09 Aligned_cols=85 Identities=9% Similarity=0.042 Sum_probs=51.2
Q ss_pred ccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhcCCeeEEeeccC-ccCcCchhhHHHHHHHc
Q 025658 121 CIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWS-LWSRDVEAEIVPTCREL 199 (249)
Q Consensus 121 ~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n-~~~~~~~~~~~~~~~~~ 199 (249)
-..+..+.+.. .-+...+|.+.|. ..+-..-.+.+.|.++.+-....++-.... .-.......+++.|++.
T Consensus 22 ~~~V~~l~R~~-------~~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~a 93 (233)
T PF05368_consen 22 GFSVRALVRDP-------SSDRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAA 93 (233)
T ss_dssp TGCEEEEESSS-------HHHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecc-------chhhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhcc
Confidence 35667776654 2223455666776 456666667888888877544333332222 11112345899999999
Q ss_pred CCeEEEcccCcccc
Q 025658 200 GIGIVAYSPLGRGF 213 (249)
Q Consensus 200 gi~v~a~spl~~G~ 213 (249)
||..+.+|.++...
T Consensus 94 gVk~~v~ss~~~~~ 107 (233)
T PF05368_consen 94 GVKHFVPSSFGADY 107 (233)
T ss_dssp T-SEEEESEESSGT
T ss_pred ccceEEEEEecccc
Confidence 99999999987666
No 99
>PTZ00413 lipoate synthase; Provisional
Probab=53.68 E-value=1.7e+02 Score=26.43 Aligned_cols=160 Identities=16% Similarity=0.195 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEeCcCCcC----CChHHHHHHHHhcCCCC--CCeEEEeecCcccCCCCCcCCCCHHHHH
Q 025658 34 PKPESDMIALIHHAINSGITLLDTSDIYG----PHTNEILLGKALKGGMR--ERVELATKFGISFADGKREIRGDPAYVR 107 (249)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg----~g~se~~lg~~l~~~~r--~~~~i~tK~~~~~~~~~~~~~~~~~~i~ 107 (249)
..+.++..++-+++.+.|++++=.+...+ +|..+. +.+.++.+.. .++.|..=++-.. .+.+.++
T Consensus 176 ~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~-~a~~I~~Ir~~~p~~~IevligDf~--------g~~e~l~ 246 (398)
T PTZ00413 176 PLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASH-VARCVELIKESNPELLLEALVGDFH--------GDLKSVE 246 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHH-HHHHHHHHHccCCCCeEEEcCCccc--------cCHHHHH
Confidence 45888899999999999998774444433 223333 3455554322 2455555544211 1232222
Q ss_pred HHHHHHHHHcCCCccceEEeecCCC-----------CCCHHHHHHHHHHHHHc--Cccc-----EEEcCcccHHHHHHHh
Q 025658 108 AACEASLKRLDIDCIDLYYQHRIDT-----------RVPIEVTIGELKKLVEE--GKIK-----YIGLSEASASTIRRAH 169 (249)
Q Consensus 108 ~~~~~sL~rLg~~~lDl~~lh~~~~-----------~~~~~~~~~~l~~l~~~--G~ir-----~iGvs~~~~~~l~~~~ 169 (249)
. |..-| +|.| =|+.+. ....++.|+.|+..++. +.+. -+|+..-..+.++-+.
T Consensus 247 ~-----L~eAG---~dvy-nHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~ 317 (398)
T PTZ00413 247 K-----LANSP---LSVY-AHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLR 317 (398)
T ss_pred H-----HHhcC---CCEE-ecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHH
Confidence 2 22223 3333 355321 23567889999988874 3332 3666554444333222
Q ss_pred h--cCCeeEEee-cc---Cc--------cCcCchhhHHHHHHHcCCeEEEcccCcc
Q 025658 170 A--VHPITAVQL-EW---SL--------WSRDVEAEIVPTCRELGIGIVAYSPLGR 211 (249)
Q Consensus 170 ~--~~~~~~~q~-~~---n~--------~~~~~~~~~~~~~~~~gi~v~a~spl~~ 211 (249)
. ...++++.+ +| +. ..+.....+-+.+.+.|...++.+||-.
T Consensus 318 dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVR 373 (398)
T PTZ00413 318 DLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVR 373 (398)
T ss_pred HHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 1 123333332 11 11 1111112566678888999999999854
No 100
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=53.07 E-value=1.7e+02 Score=26.86 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhcC---CeeEEe---e--------------ccCccCcCchhhHHH
Q 025658 135 PIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVH---PITAVQ---L--------------EWSLWSRDVEAEIVP 194 (249)
Q Consensus 135 ~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~---~~~~~q---~--------------~~n~~~~~~~~~~~~ 194 (249)
.+++.++.+.++..+.. +.+.+.++.... +++..+ . -||.++ .+.++
T Consensus 199 ~~~~~~~~~a~~v~~~v---------Dld~l~~ia~~~~~~~~~~~~~~~~~~~~~~rIAVA~D~AF~FyY----~~nl~ 265 (451)
T COG1797 199 ELEAKLEALAEVVEKHV---------DLDALLEIASSAGPLEPDLSPEPERGNPLGVRIAVARDAAFNFYY----PENLE 265 (451)
T ss_pred hHHHHHHHHHHHHHhhC---------CHHHHHHHHhccCCCCCCccccccccCCcCceEEEEecchhcccc----HHHHH
Confidence 45667888887777654 677777665531 111111 0 122222 28999
Q ss_pred HHHHcCCeEEEcccCccccCC
Q 025658 195 TCRELGIGIVAYSPLGRGFFS 215 (249)
Q Consensus 195 ~~~~~gi~v~a~spl~~G~l~ 215 (249)
..++.|-.++-||||..--|.
T Consensus 266 ~Lr~~GAelv~FSPL~D~~lP 286 (451)
T COG1797 266 LLREAGAELVFFSPLADEELP 286 (451)
T ss_pred HHHHCCCEEEEeCCcCCCCCC
Confidence 999999999999999865544
No 101
>PLN02389 biotin synthase
Probab=52.79 E-value=1.7e+02 Score=26.22 Aligned_cols=101 Identities=16% Similarity=0.127 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHhcCCCEEeCcCCc-CC-C--hHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHH
Q 025658 35 KPESDMIALIHHAINSGITLLDTSDIY-GP-H--TNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAAC 110 (249)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Y-g~-g--~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 110 (249)
.+.+++.+.++.+.+.|++.|-..... +. + ..-..+-+.++.+....+.|....+. .+.+.+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~----------l~~E~l---- 181 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGM----------LEKEQA---- 181 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCC----------CCHHHH----
Confidence 477889999999999999988432111 11 1 11234445555533334555543331 223222
Q ss_pred HHHHHHcCCCccceEEeec-C------CCCCCHHHHHHHHHHHHHcCc
Q 025658 111 EASLKRLDIDCIDLYYQHR-I------DTRVPIEVTIGELKKLVEEGK 151 (249)
Q Consensus 111 ~~sL~rLg~~~lDl~~lh~-~------~~~~~~~~~~~~l~~l~~~G~ 151 (249)
+.|+.-|++++-.- +.. + -.....++.++.++.+++.|.
T Consensus 182 -~~LkeAGld~~~~~-LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 182 -AQLKEAGLTAYNHN-LDTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred -HHHHHcCCCEEEee-ecCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 33445576654331 121 1 012356788999999999985
No 102
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=52.42 E-value=78 Score=26.54 Aligned_cols=76 Identities=18% Similarity=0.302 Sum_probs=47.6
Q ss_pred CCCcccCcceecccccCCCCCCCC--CHHHHHHH----HHHHHhcCCCEEeCcCC---cCCChHHHHHHHHhcC------
Q 025658 12 SQGLEVSAQGLGCMGMSAFYGPPK--PESDMIAL----IHHAINSGITLLDTSDI---YGPHTNEILLGKALKG------ 76 (249)
Q Consensus 12 ~~g~~vs~lglG~~~~g~~~~~~~--~~~~~~~~----l~~A~~~Gi~~~DtA~~---Yg~g~se~~lg~~l~~------ 76 (249)
.+|+.+|.+||.+.+-= .+|+.. ..+++..+ +..|.+.|||.|--|.. |.. .+|+...+++..
T Consensus 65 etgv~ipSmClSaHRRf-PfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~-~d~eT~~rFi~g~~~a~~ 142 (287)
T COG3623 65 ETGVRIPSMCLSAHRRF-PFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEE-ADEETRQRFIEGLKWAVE 142 (287)
T ss_pred HhCCCccchhhhhhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeecc-CCHHHHHHHHHHHHHHHH
Confidence 57999999999998631 144432 23445444 45556789999998853 322 344444555543
Q ss_pred -CCCCCeEEEeecC
Q 025658 77 -GMRERVELATKFG 89 (249)
Q Consensus 77 -~~r~~~~i~tK~~ 89 (249)
..+.++.++.-+.
T Consensus 143 lA~~aqV~lAvEiM 156 (287)
T COG3623 143 LAARAQVMLAVEIM 156 (287)
T ss_pred HHHhhccEEEeeec
Confidence 4567777777665
No 103
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=52.15 E-value=1.6e+02 Score=25.55 Aligned_cols=134 Identities=12% Similarity=0.081 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCC---------cCCCh----HHHHHHHHhcCCC-CCCeEEEeecCcccCCCCCcCCC
Q 025658 36 PESDMIALIHHAINSGITLLDTSDI---------YGPHT----NEILLGKALKGGM-RERVELATKFGISFADGKREIRG 101 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~---------Yg~g~----se~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~ 101 (249)
++++..++.+.+.+.|+..||.--. |+ |. ..+.+.+.++.+. .-.+-|+.|+..... .
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~-Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~-------~ 144 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGA-GSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWD-------D 144 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCc-cchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccC-------C
Confidence 5677888888899999999987322 22 21 2355555555421 113567888753221 1
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCCCC--HHHHHHHHHHHHHcCcccEEEcCc-ccHHHHHHHhhcCCeeEEe
Q 025658 102 DPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVP--IEVTIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQ 178 (249)
Q Consensus 102 ~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~--~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q 178 (249)
+...+ ..+-+.++..|. |.+.+|....... -...|+.+.++++.=.+--++... .+++++.++++....+.++
T Consensus 145 ~~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vm 220 (319)
T TIGR00737 145 AHINA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVM 220 (319)
T ss_pred CcchH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEE
Confidence 11112 234455677775 5666775432211 123578888888876677777765 5678888888666677777
Q ss_pred ecc
Q 025658 179 LEW 181 (249)
Q Consensus 179 ~~~ 181 (249)
+--
T Consensus 221 igR 223 (319)
T TIGR00737 221 IGR 223 (319)
T ss_pred ECh
Confidence 643
No 104
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=51.75 E-value=48 Score=27.42 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEeCcCCcCCC---hHHHHHHHHhc
Q 025658 34 PKPESDMIALIHHAINSGITLLDTSDIYGPH---TNEILLGKALK 75 (249)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g---~se~~lg~~l~ 75 (249)
+.+.++..++++.|.+.||+-+=..++|-.| ..++.+.+.+.
T Consensus 16 p~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~ 60 (254)
T COG4464 16 PKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKAN 60 (254)
T ss_pred CCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHH
Confidence 4577899999999999999988777777555 34455554444
No 105
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=51.72 E-value=1.4e+02 Score=24.97 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHhcCCCEEeCc
Q 025658 35 KPESDMIALIHHAINSGITLLDTS 58 (249)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA 58 (249)
.+.++..++++...+.||..++..
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 466788999999999999999997
No 106
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=51.61 E-value=46 Score=30.69 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=42.8
Q ss_pred HHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcC-cccHHHHHHHhhcCCeeEEeeccC
Q 025658 114 LKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLEWS 182 (249)
Q Consensus 114 L~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n 182 (249)
...+|.|++-+.+........+.+.. ..+.+... ++.+||- |-+++.+.++.+...++++|++-+
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a-~~i~~~l~---v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~ 338 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQA-QEIIAAAP---LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGD 338 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHH-HHHHHhCC---CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCC
Confidence 45678888888643322222333333 22222222 8899998 788899999988889999998664
No 107
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=51.53 E-value=1.6e+02 Score=26.51 Aligned_cols=89 Identities=11% Similarity=0.111 Sum_probs=57.8
Q ss_pred ceEEeecCCCC-----------CCHHHHHHHHHHHHH-cCc---ccEEEcC--cccHHH---HHHHhhcC---CeeEEee
Q 025658 123 DLYYQHRIDTR-----------VPIEVTIGELKKLVE-EGK---IKYIGLS--EASAST---IRRAHAVH---PITAVQL 179 (249)
Q Consensus 123 Dl~~lh~~~~~-----------~~~~~~~~~l~~l~~-~G~---ir~iGvs--~~~~~~---l~~~~~~~---~~~~~q~ 179 (249)
=.+-||.+++. .+++++++++.++.+ .|+ |+++=+. |-+.++ |.+++... +..++-+
T Consensus 240 LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLI 319 (373)
T PRK14459 240 LAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLI 319 (373)
T ss_pred EEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEE
Confidence 34678988653 347888998887774 353 3455554 444444 44444444 5688889
Q ss_pred ccCccCcC----ch----hhHHHHHHHcCCeEEEcccCcc
Q 025658 180 EWSLWSRD----VE----AEIVPTCRELGIGIVAYSPLGR 211 (249)
Q Consensus 180 ~~n~~~~~----~~----~~~~~~~~~~gi~v~a~spl~~ 211 (249)
+||..... +. ....+..+++||.+......+.
T Consensus 320 pyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 320 PLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred ccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 99986431 11 1567778899999999888754
No 108
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=51.44 E-value=1.4e+02 Score=25.83 Aligned_cols=73 Identities=11% Similarity=0.033 Sum_probs=51.4
Q ss_pred HHHHHHHHcCcc-cEEEcCcccHHHHHHHhhcCCeeEEeeccCccCc-CchhhHHHHHHHcCCeEEEcccCcccc
Q 025658 141 GELKKLVEEGKI-KYIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAYSPLGRGF 213 (249)
Q Consensus 141 ~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~spl~~G~ 213 (249)
+.+.++.++-.+ -+.|=|-++..++.++++...++++|+.....-- .....+.+.|+.+|+.++..+.+..|+
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHH
Confidence 455556555433 3566666788888888887778888887775431 123488999999999999877665554
No 109
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=51.40 E-value=1.5e+02 Score=25.09 Aligned_cols=132 Identities=16% Similarity=0.121 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHhcCCCEEeC---cCCcCCC----hHHHHHHHHhcCCCCC-CeEEEeecCcccCCCCCcCCCCHHHHH
Q 025658 36 PESDMIALIHHAINSGITLLDT---SDIYGPH----TNEILLGKALKGGMRE-RVELATKFGISFADGKREIRGDPAYVR 107 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dt---A~~Yg~g----~se~~lg~~l~~~~r~-~~~i~tK~~~~~~~~~~~~~~~~~~i~ 107 (249)
+.++..+..+.+.+.|+..||. +++...+ ...+.+.+.++.+.+. ++-|..|+... .+.+.+.
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~---------~~~~~~~ 179 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY---------FDLEDIV 179 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC---------CCHHHHH
Confidence 5577888899999999999986 3332211 2345555555542211 56788898742 3444444
Q ss_pred HHHHHHHHHcCCCccceEEeecCCCC-------------C---C-----H-HHHHHHHHHHHHcC--cccEEEcCcc-cH
Q 025658 108 AACEASLKRLDIDCIDLYYQHRIDTR-------------V---P-----I-EVTIGELKKLVEEG--KIKYIGLSEA-SA 162 (249)
Q Consensus 108 ~~~~~sL~rLg~~~lDl~~lh~~~~~-------------~---~-----~-~~~~~~l~~l~~~G--~ir~iGvs~~-~~ 162 (249)
+-++ .++..|. |.+.+|+-... . . + .-.++.+.++++.= .+--||.... ++
T Consensus 180 ~~a~-~l~~~Ga---d~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~ 255 (289)
T cd02810 180 ELAK-AAERAGA---DGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSG 255 (289)
T ss_pred HHHH-HHHHcCC---CEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCH
Confidence 4333 4566775 55555532100 0 0 0 12466777777654 6778887775 46
Q ss_pred HHHHHHhhcCCeeEEeecc
Q 025658 163 STIRRAHAVHPITAVQLEW 181 (249)
Q Consensus 163 ~~l~~~~~~~~~~~~q~~~ 181 (249)
+.+.+++..+ .+.+|+--
T Consensus 256 ~da~~~l~~G-Ad~V~vg~ 273 (289)
T cd02810 256 EDVLEMLMAG-ASAVQVAT 273 (289)
T ss_pred HHHHHHHHcC-ccHheEcH
Confidence 7788777654 56666543
No 110
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=51.09 E-value=98 Score=27.33 Aligned_cols=133 Identities=15% Similarity=0.194 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHhcC-CCEEeCcCCcCCChHHHHHHHHhcCCC-CCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHH
Q 025658 35 KPESDMIALIHHAINSG-ITLLDTSDIYGPHTNEILLGKALKGGM-RERVELATKFGISFADGKREIRGDPAYVRAACEA 112 (249)
Q Consensus 35 ~~~~~~~~~l~~A~~~G-i~~~DtA~~Yg~g~se~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 112 (249)
.+.+++.+.-+.|-+.| .+|...|..++.|..-..+-++++.+. --.+-+.--+|. .+.+.. +
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG~----------l~~eq~-----~ 148 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLGM----------LTEEQA-----E 148 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccCC----------CCHHHH-----H
Confidence 35677888888888999 899999988864444455555555422 112444444441 233332 3
Q ss_pred HHHHcCCCccceEEeecCCC----------CCCHHHHHHHHHHHHHcCccc----EEEcCcccHHHHHHHhhcCCee-EE
Q 025658 113 SLKRLDIDCIDLYYQHRIDT----------RVPIEVTIGELKKLVEEGKIK----YIGLSEASASTIRRAHAVHPIT-AV 177 (249)
Q Consensus 113 sL~rLg~~~lDl~~lh~~~~----------~~~~~~~~~~l~~l~~~G~ir----~iGvs~~~~~~l~~~~~~~~~~-~~ 177 (249)
-|+.-|+++ +-|+.+. ..+.++-++.++.+++.|.-- =+|+.+-..+.++-+....... +-
T Consensus 149 ~L~~aGvd~----ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pd 224 (335)
T COG0502 149 KLADAGVDR----YNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPD 224 (335)
T ss_pred HHHHcChhh----eecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCCC
Confidence 456667664 4454432 345788999999999999764 3555555555444443321111 44
Q ss_pred eeccCccCc
Q 025658 178 QLEWSLWSR 186 (249)
Q Consensus 178 q~~~n~~~~ 186 (249)
.+++|.+++
T Consensus 225 sVPIn~l~P 233 (335)
T COG0502 225 SVPINFLNP 233 (335)
T ss_pred eeeeeeecC
Confidence 455555554
No 111
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=50.98 E-value=1.8e+02 Score=25.80 Aligned_cols=152 Identities=10% Similarity=0.050 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcCCC--hHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHH
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYGPH--TNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEAS 113 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g--~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~s 113 (249)
+.++..+.++.+.+.|++.|=.- .++.. ......=+++|+.-.+++.|..=. + ..++.+...+ +-+.
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i~~vR~~~G~~~~l~vDa----n-----~~~~~~~A~~-~~~~ 211 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKACLAVREAVGPDMRLMHDG----A-----HWYSRADALR-LGRA 211 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHHHHHHHHhCCCCeEEEEC----C-----CCcCHHHHHH-HHHH
Confidence 55667788888899999998653 12110 111222344444112233333211 1 1244433322 2223
Q ss_pred HHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEcCccc-HHHHHHHhhcCCeeEEeeccCccCc-Cchh
Q 025658 114 LKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEAS-ASTIRRAHAVHPITAVQLEWSLWSR-DVEA 190 (249)
Q Consensus 114 L~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~-~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~ 190 (249)
|+.+ ++.++-.|-. .. .++.+.+|+++-.+- ..|=+-++ ..++.++++...++++|+..+..-- ....
T Consensus 212 l~~~-----~l~~iEeP~~---~~-d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~ 282 (368)
T cd03329 212 LEEL-----GFFWYEDPLR---EA-SISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAM 282 (368)
T ss_pred hhhc-----CCCeEeCCCC---ch-hHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHH
Confidence 3333 4444554432 22 356777888876554 33434466 8888888888888999998776432 2344
Q ss_pred hHHHHHHHcCCeEEEcc
Q 025658 191 EIVPTCRELGIGIVAYS 207 (249)
Q Consensus 191 ~~~~~~~~~gi~v~a~s 207 (249)
.+...|+++|+.+..++
T Consensus 283 ~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 283 KTAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHHcCCEEEEEC
Confidence 89999999999997654
No 112
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=50.21 E-value=44 Score=29.64 Aligned_cols=103 Identities=10% Similarity=0.026 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhcCCeeEEeec
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLE 180 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~ 180 (249)
.+.+. +-.+-+.|.++|+++|++-..-+|...-.+.+.-+.++.+++...++..++. .+.+.++.+++... +.+.+.
T Consensus 65 ~s~e~-Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~~l~-~n~~die~A~~~g~-~~v~i~ 141 (347)
T PLN02746 65 VPTSV-KVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFPVLT-PNLKGFEAAIAAGA-KEVAVF 141 (347)
T ss_pred CCHHH-HHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhccCCceeEEc-CCHHHHHHHHHcCc-CEEEEE
Confidence 34433 3456677999999999987555553221122233333344443335554553 47888888877632 223222
Q ss_pred cCc--------cCcCch------hhHHHHHHHcCCeEEEc
Q 025658 181 WSL--------WSRDVE------AEIVPTCRELGIGIVAY 206 (249)
Q Consensus 181 ~n~--------~~~~~~------~~~~~~~~~~gi~v~a~ 206 (249)
++. ++...+ .+++++++++|+.+.++
T Consensus 142 ~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 142 ASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 211 111111 27889999999988533
No 113
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=50.14 E-value=1.8e+02 Score=25.64 Aligned_cols=118 Identities=18% Similarity=0.134 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHhcCCCEEeCcCCcCC----------------C--hHHHHHHHHhcCCCCCCeEEEeecCcccCCCC
Q 025658 35 KPESDMIALIHHAINSGITLLDTSDIYGP----------------H--TNEILLGKALKGGMRERVELATKFGISFADGK 96 (249)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~----------------g--~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~ 96 (249)
.+.+...++.+.|-+.|+-+|-|--.+.. | ....++....+ ....+.++|=.
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGm-------- 156 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGM-------- 156 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEccc--------
Confidence 46677889999999999999987665540 1 11122222222 22345555543
Q ss_pred CcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCC-CCCCHHHH-HHHHHHHHHcCcccEEEcCcccHHHHHHHhh
Q 025658 97 REIRGDPAYVRAACEASLKRLDIDCIDLYYQHRID-TRVPIEVT-IGELKKLVEEGKIKYIGLSEASASTIRRAHA 170 (249)
Q Consensus 97 ~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~-~~~~~~~~-~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 170 (249)
.+-+.+.++++..+++=. . |+.+||+.. +..+.++. +.++..|.+.= ---||+|.++..-+..+..
T Consensus 157 ----a~~~ei~~av~~~r~~g~-~--~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~A 224 (347)
T COG2089 157 ----ATIEEIEEAVAILRENGN-P--DIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAA 224 (347)
T ss_pred ----ccHHHHHHHHHHHHhcCC-C--CeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHHH
Confidence 355677777776655543 3 999999864 44555542 44555554443 4579999999886655544
No 114
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=49.90 E-value=1.6e+02 Score=26.08 Aligned_cols=88 Identities=13% Similarity=0.123 Sum_probs=54.6
Q ss_pred eEEeecCCCC-----------CCHHHHHHHHHHHHHcCc----ccEEEcC--cccHHHHHHH---hhcCCeeEEeeccCc
Q 025658 124 LYYQHRIDTR-----------VPIEVTIGELKKLVEEGK----IKYIGLS--EASASTIRRA---HAVHPITAVQLEWSL 183 (249)
Q Consensus 124 l~~lh~~~~~-----------~~~~~~~~~l~~l~~~G~----ir~iGvs--~~~~~~l~~~---~~~~~~~~~q~~~n~ 183 (249)
.+-||.|++. .++++.++++.++.++-. ++++=+. |-+.++++++ +...+..++-++||.
T Consensus 215 aiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~ 294 (342)
T PRK14465 215 AISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNT 294 (342)
T ss_pred EEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCC
Confidence 3678888553 346788888887764422 2244443 4555555544 444457788888887
Q ss_pred cCcC---chh----hHHHHHHHcCCeEEEcccCcc
Q 025658 184 WSRD---VEA----EIVPTCRELGIGIVAYSPLGR 211 (249)
Q Consensus 184 ~~~~---~~~----~~~~~~~~~gi~v~a~spl~~ 211 (249)
.... +.. ...+.++++||.+......+.
T Consensus 295 ~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 295 EFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 4321 121 456667788999998887754
No 115
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=49.46 E-value=1.8e+02 Score=25.45 Aligned_cols=153 Identities=14% Similarity=0.129 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcCC--C----hHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHH
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYGP--H----TNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAA 109 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g----~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~ 109 (249)
+.++..+.++.+++.|++.|=.--..+. + ......=+++++.-.+++-|..=.- ..++.+...
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~~g~~~~l~vDan---------~~~~~~~A~-- 188 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAVGYDVDLMLDCY---------MSWNLNYAI-- 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcEEEECC---------CCCCHHHHH--
Confidence 4466667778888999998754321110 0 0111122334431122333321111 123443322
Q ss_pred HHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEcCcccHHHHHHHhhcCCeeEEeeccCccCc-C
Q 025658 110 CEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-D 187 (249)
Q Consensus 110 ~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~ 187 (249)
+.+++|. .+++.++-.|-+.. .++.+.+|+++..+- +.|=|.++...+.++++...++++|+..+..-- .
T Consensus 189 --~~~~~l~--~~~~~~iEeP~~~~----d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit 260 (341)
T cd03327 189 --KMARALE--KYELRWIEEPLIPD----DIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGIT 260 (341)
T ss_pred --HHHHHhh--hcCCccccCCCCcc----CHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHH
Confidence 2333332 23555555554322 467778888887775 667777889999999988889999988766432 2
Q ss_pred chhhHHHHHHHcCCeEEEcc
Q 025658 188 VEAEIVPTCRELGIGIVAYS 207 (249)
Q Consensus 188 ~~~~~~~~~~~~gi~v~a~s 207 (249)
....+.+.|+++|+.+..++
T Consensus 261 ~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 261 ELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHHHHcCCeecccc
Confidence 34489999999999988774
No 116
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=49.33 E-value=1.8e+02 Score=25.80 Aligned_cols=25 Identities=4% Similarity=0.127 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHhcCCCEEeCcC
Q 025658 35 KPESDMIALIHHAINSGITLLDTSD 59 (249)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA~ 59 (249)
.+.++..++++..-+.||..|+...
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3557888999998999999999754
No 117
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=48.42 E-value=2e+02 Score=25.52 Aligned_cols=83 Identities=10% Similarity=0.009 Sum_probs=59.5
Q ss_pred ceEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEcCcccHHHHHHHhhcCCeeEEeeccCccCc-CchhhHHHHHHHcC
Q 025658 123 DLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELG 200 (249)
Q Consensus 123 Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~g 200 (249)
++.++-.|-.. +.++.+.+|++...+. +.|=|-++..++.++++...++++|+..+..-- .....+...|+.+|
T Consensus 214 ~~~~iEeP~~~----~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~g 289 (368)
T TIGR02534 214 GVELIEQPTPA----ENREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAG 289 (368)
T ss_pred ChhheECCCCc----ccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcC
Confidence 44555555332 2467777888877665 778788899999999888888999987766431 12347889999999
Q ss_pred CeEEEcccC
Q 025658 201 IGIVAYSPL 209 (249)
Q Consensus 201 i~v~a~spl 209 (249)
+.++..+.+
T Consensus 290 i~~~~~~~~ 298 (368)
T TIGR02534 290 IALYGGTML 298 (368)
T ss_pred Cceeeecch
Confidence 999876543
No 118
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=48.41 E-value=1.5e+02 Score=27.14 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeec
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQHR 129 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~lh~ 129 (249)
.+.+.+++.++..++ |+.++++++.+.-
T Consensus 227 qT~e~~~~~l~~~~~-l~~~~is~y~L~~ 254 (449)
T PRK09058 227 QTPEIWQQDLAIVRD-LGLDGVDLYALNL 254 (449)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecccc
Confidence 467777777766554 8888888888754
No 119
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=47.90 E-value=1.5e+02 Score=24.02 Aligned_cols=81 Identities=26% Similarity=0.319 Sum_probs=42.5
Q ss_pred hcCCCEEeCcCCcCCChHHHHHHHHhcC-CCCCCeEEE--eecCcccCC----------------C---CCc---CCCCH
Q 025658 49 NSGITLLDTSDIYGPHTNEILLGKALKG-GMRERVELA--TKFGISFAD----------------G---KRE---IRGDP 103 (249)
Q Consensus 49 ~~Gi~~~DtA~~Yg~g~se~~lg~~l~~-~~r~~~~i~--tK~~~~~~~----------------~---~~~---~~~~~ 103 (249)
+.|+-.+-|.+.=| .+-..+|.++|. ...-++.|+ -|.++.... + .+. ...+.
T Consensus 27 ~~Gli~V~TG~GKG--KTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~~~~~~d~ 104 (198)
T COG2109 27 EKGLIIVFTGNGKG--KTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWETQDREADI 104 (198)
T ss_pred ccCeEEEEecCCCC--hhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCCCcCcHHHH
Confidence 45777777776555 677777777776 222333333 233311100 0 000 00123
Q ss_pred HHHHHHHHHHHHHcCCCccceEEeecCC
Q 025658 104 AYVRAACEASLKRLDIDCIDLYYQHRID 131 (249)
Q Consensus 104 ~~i~~~~~~sL~rLg~~~lDl~~lh~~~ 131 (249)
...++.++.+++.+..+..|+++|....
T Consensus 105 ~aa~~~w~~a~~~l~~~~ydlviLDEl~ 132 (198)
T COG2109 105 AAAKAGWEHAKEALADGKYDLVILDELN 132 (198)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhh
Confidence 4556666666677766666777766553
No 120
>PTZ00081 enolase; Provisional
Probab=47.72 E-value=2.1e+02 Score=26.27 Aligned_cols=96 Identities=13% Similarity=0.065 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcC--cccEEEc--CcccHHHHHHHhhcCCeeE
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEG--KIKYIGL--SEASASTIRRAHAVHPITA 176 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGv--s~~~~~~l~~~~~~~~~~~ 176 (249)
.+++.+.+-+.+.++.++ ++++-.|-.. +.|+.+.+|.++- .+.-+|= +..+++.+.+.++....++
T Consensus 281 ~s~~eli~~~~~~l~~y~-----I~~IEDPl~~----~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKYP-----IVSIEDPFDQ----DDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcCC-----cEEEEcCCCc----ccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 466666666666666553 5667766443 3566667776654 5655554 3466999999999888899
Q ss_pred EeeccCccCc-CchhhHHHHHHHcCCeEEE
Q 025658 177 VQLEWSLWSR-DVEAEIVPTCRELGIGIVA 205 (249)
Q Consensus 177 ~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a 205 (249)
+|+..|-+-- ....++...|+++|+.++.
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 9998886542 2334789999999999876
No 121
>PRK05414 urocanate hydratase; Provisional
Probab=47.62 E-value=65 Score=30.06 Aligned_cols=114 Identities=17% Similarity=0.131 Sum_probs=76.8
Q ss_pred HHHHHhcCCCEE--eCcCCcC--------CChHHHHHHHHhcC---CCCCCeEEEeecCcccCCCCCcCCCCHHHH----
Q 025658 44 IHHAINSGITLL--DTSDIYG--------PHTNEILLGKALKG---GMRERVELATKFGISFADGKREIRGDPAYV---- 106 (249)
Q Consensus 44 l~~A~~~Gi~~~--DtA~~Yg--------~g~se~~lg~~l~~---~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i---- 106 (249)
+...-+.|+..+ -||-+|- .|.-|.++.-+-+. -...++++++-++.... ..+...
T Consensus 118 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgG-------AQPlA~~mag 190 (556)
T PRK05414 118 FNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGG-------AQPLAATMAG 190 (556)
T ss_pred HHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCcccc-------ccHHHHHhcC
Confidence 555666777755 2454442 35777766555443 23567888888875531 111111
Q ss_pred ------HHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhc
Q 025658 107 ------RAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV 171 (249)
Q Consensus 107 ------~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 171 (249)
+-.-.+.-+|+.+.|+|.+ ..++++.++..++.+++|+..+||+-..-++.+.++.+.
T Consensus 191 ~v~i~vEvd~~ri~kR~~~gyld~~-------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~ 254 (556)
T PRK05414 191 AVCLAVEVDESRIDKRLRTGYLDEK-------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRR 254 (556)
T ss_pred ceEEEEEECHHHHHHHHhCCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHc
Confidence 1112344578888898865 356899999999999999999999999888888888775
No 122
>PRK07094 biotin synthase; Provisional
Probab=47.21 E-value=1.3e+02 Score=25.94 Aligned_cols=115 Identities=16% Similarity=0.154 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCc----CCcCCChHHHHHHHHhcCCCC-CCeEEEeecCcccCCCCCcCCCCHHHHHHHH
Q 025658 36 PESDMIALIHHAINSGITLLDTS----DIYGPHTNEILLGKALKGGMR-ERVELATKFGISFADGKREIRGDPAYVRAAC 110 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA----~~Yg~g~se~~lg~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 110 (249)
+.++..+.++.+.+.|++.|--. +.|. . ..+-+.++.+.. ..+.+..-.+ ..+.+.+
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~gG~~~~~~---~-~~l~~l~~~i~~~~~l~i~~~~g----------~~~~e~l---- 132 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQSGEDPYYT---D-EKIADIIKEIKKELDVAITLSLG----------ERSYEEY---- 132 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCC---H-HHHHHHHHHHHccCCceEEEecC----------CCCHHHH----
Confidence 67788888999999999887432 2232 2 223333433221 2343322111 1222222
Q ss_pred HHHHHHcCCCccceEEeecC--------CCCCCHHHHHHHHHHHHHcCccc----EEEcCcccHHHHHHHhh
Q 025658 111 EASLKRLDIDCIDLYYQHRI--------DTRVPIEVTIGELKKLVEEGKIK----YIGLSEASASTIRRAHA 170 (249)
Q Consensus 111 ~~sL~rLg~~~lDl~~lh~~--------~~~~~~~~~~~~l~~l~~~G~ir----~iGvs~~~~~~l~~~~~ 170 (249)
+.|++.|.+.+-+ -+... ......++.+++++.+++.|.-- -+|+...+.+++.+.+.
T Consensus 133 -~~Lk~aG~~~v~~-glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~ 202 (323)
T PRK07094 133 -KAWKEAGADRYLL-RHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDIL 202 (323)
T ss_pred -HHHHHcCCCEEEe-ccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHH
Confidence 3455667554331 11111 12345678899999999998632 35665667676655443
No 123
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=46.48 E-value=1.3e+02 Score=26.80 Aligned_cols=94 Identities=13% Similarity=0.079 Sum_probs=59.8
Q ss_pred eEEeecCCCC-----------CCHHHHHHHHHHHHHcC--cc--cEEEcC--cccHHHHHHHhh---cCCeeEEeeccCc
Q 025658 124 LYYQHRIDTR-----------VPIEVTIGELKKLVEEG--KI--KYIGLS--EASASTIRRAHA---VHPITAVQLEWSL 183 (249)
Q Consensus 124 l~~lh~~~~~-----------~~~~~~~~~l~~l~~~G--~i--r~iGvs--~~~~~~l~~~~~---~~~~~~~q~~~n~ 183 (249)
.+-||.|++. .++++..+++.+..++. +| .++=+. |-+.+++.++.+ ..+..++-++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 5778987542 35788888888865433 22 234443 566666555544 3567888889996
Q ss_pred cCc----Cchh----hHHHHHHHcCCeEEEcccCc------cccCCCC
Q 025658 184 WSR----DVEA----EIVPTCRELGIGIVAYSPLG------RGFFSSG 217 (249)
Q Consensus 184 ~~~----~~~~----~~~~~~~~~gi~v~a~spl~------~G~l~~~ 217 (249)
... .+.. ...+..+++|+.+......+ +|.|..+
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~dI~aACGQL~~~ 337 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGEDIFAACGMLSTA 337 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCCchhhcCccchhh
Confidence 433 1221 45566778999999888874 4666543
No 124
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=46.47 E-value=1.8e+02 Score=24.58 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCc
Q 025658 36 PESDMIALIHHAINSGITLLDTS 58 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA 58 (249)
+.++..++.+..-++||..|+..
T Consensus 18 ~~~~~~~ia~~L~~~GVd~IEvG 40 (266)
T cd07944 18 GDEFVKAIYRALAAAGIDYVEIG 40 (266)
T ss_pred CHHHHHHHHHHHHHCCCCEEEee
Confidence 55788899998889999999987
No 125
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=46.45 E-value=1.8e+02 Score=24.58 Aligned_cols=104 Identities=13% Similarity=0.159 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCC------CHHHHHHHHHHHHHcCcccEEEcCccc---HHHHHHHhh
Q 025658 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRV------PIEVTIGELKKLVEEGKIKYIGLSEAS---ASTIRRAHA 170 (249)
Q Consensus 100 ~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~------~~~~~~~~l~~l~~~G~ir~iGvs~~~---~~~l~~~~~ 170 (249)
.++.+... .+-+.|.++|+++|++-+........ .-.+.++.+.++.+ +..+..+++... .+.++.+..
T Consensus 16 ~f~~~~~~-~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 16 DFGDEFVK-AIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASG 93 (266)
T ss_pred cCCHHHHH-HHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhc
Confidence 45555554 46666999999999987765432110 11345666555543 345666655443 455665544
Q ss_pred cCCeeEEeeccCccCcCchhhHHHHHHHcCCeEEEc
Q 025658 171 VHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 206 (249)
Q Consensus 171 ~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 206 (249)
. .++.+.+.+.......-.+.+++++++|+.|...
T Consensus 94 ~-gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 94 S-VVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred C-CcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 3 3455444433333222347888999999876643
No 126
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=46.38 E-value=67 Score=29.85 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=76.0
Q ss_pred HHHHHhcCCCEE--eCcCCcC--------CChHHHHHHHHhcC---CCCCCeEEEeecCcccCCCCCcCCCCHHHH----
Q 025658 44 IHHAINSGITLL--DTSDIYG--------PHTNEILLGKALKG---GMRERVELATKFGISFADGKREIRGDPAYV---- 106 (249)
Q Consensus 44 l~~A~~~Gi~~~--DtA~~Yg--------~g~se~~lg~~l~~---~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i---- 106 (249)
+...-+.|+..+ -||-+|- .|.-|.++.-+-+. -.+.++++++-++.... ..+...
T Consensus 109 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L~G~~~lTaGLGGMgG-------AQPlA~~mag 181 (545)
T TIGR01228 109 FHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSLKGKWVLTAGLGGMGG-------AQPLAVTMNG 181 (545)
T ss_pred HHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCCceeEEEEeCCCcccc-------ccHHHHHHcC
Confidence 555666787755 2444442 35777765554443 23567888887775431 111111
Q ss_pred ------HHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhc
Q 025658 107 ------RAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV 171 (249)
Q Consensus 107 ------~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 171 (249)
+-.-.+.-+|+.+.|+|.+ ..++++.++..++.+++|+..+||+-..-.+.+.++.+.
T Consensus 182 ~v~i~vEvd~~ri~kR~~~gyld~~-------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r 245 (545)
T TIGR01228 182 GVSIAVEVDESRIDKRLETKYCDEQ-------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKR 245 (545)
T ss_pred ceEEEEEECHHHHHHHHhcCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHc
Confidence 0112344578888888864 356899999999999999999999999888988888875
No 127
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=46.06 E-value=1.6e+02 Score=24.00 Aligned_cols=25 Identities=12% Similarity=0.216 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCC
Q 025658 36 PESDMIALIHHAINSGITLLDTSDI 60 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~ 60 (249)
.+|....+++.|++.|+..|++-=.
T Consensus 11 ~pENT~~af~~a~~~g~d~vE~Dv~ 35 (234)
T cd08570 11 YPENTLLAFEKAVEAGADAIETDVH 35 (234)
T ss_pred CCccHHHHHHHHHHhCCCEEEEEee
Confidence 3467899999999999999887544
No 128
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=45.95 E-value=81 Score=26.00 Aligned_cols=76 Identities=17% Similarity=0.100 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHhcCCCEEeCcCCcCC-ChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHH
Q 025658 35 KPESDMIALIHHAINSGITLLDTSDIYGP-HTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEAS 113 (249)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~s 113 (249)
.++++..++.+.+.++|..|+=|+..|+. |.+.+.+....+.. +.++ ..|.. ++ =.+.+...+-++.-
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~-~~~~--~IKas----GG----Irt~~~a~~~i~aG 201 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETV-GPRV--GVKAS----GG----IRTLEDALAMIEAG 201 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-CCCc--eEEee----CC----cCCHHHHHHHHHcC
Confidence 46788999999999999999999999963 45555444333322 2222 22222 11 13566666667666
Q ss_pred HHHcCCCc
Q 025658 114 LKRLDIDC 121 (249)
Q Consensus 114 L~rLg~~~ 121 (249)
-.|+|+.+
T Consensus 202 A~riGtS~ 209 (221)
T PRK00507 202 ATRLGTSA 209 (221)
T ss_pred cceEccCc
Confidence 67777654
No 129
>PRK00077 eno enolase; Provisional
Probab=45.89 E-value=2.4e+02 Score=25.76 Aligned_cols=96 Identities=7% Similarity=0.030 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcC--cccEEEcCc--ccHHHHHHHhhcCCeeE
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEG--KIKYIGLSE--ASASTIRRAHAVHPITA 176 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvs~--~~~~~l~~~~~~~~~~~ 176 (249)
.+++...+.+.+.++++ ++.++-.|-+.. .|+.+.+|.++- ++.-+|==. .++..+.++++....++
T Consensus 261 ~s~~e~~~~~~~l~e~y-----~i~~iEdPl~~~----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDKY-----PIVSIEDGLDEN----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhhC-----CcEEEEcCCCCc----cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 45555555555555553 567777775533 466666676664 455444332 36899999998888899
Q ss_pred EeeccCccCc-CchhhHHHHHHHcCCeEEE
Q 025658 177 VQLEWSLWSR-DVEAEIVPTCRELGIGIVA 205 (249)
Q Consensus 177 ~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a 205 (249)
+|+..+-+-- ....++...|+++|+.++.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 9988876532 2334889999999998654
No 130
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=45.67 E-value=2.2e+02 Score=25.27 Aligned_cols=92 Identities=15% Similarity=0.279 Sum_probs=54.4
Q ss_pred CccceEE-eecCCCC-----------CCHHHHHHHHHHHHH-cCc---ccEEEcC--cccHHHHHHHhhc---C-----C
Q 025658 120 DCIDLYY-QHRIDTR-----------VPIEVTIGELKKLVE-EGK---IKYIGLS--EASASTIRRAHAV---H-----P 173 (249)
Q Consensus 120 ~~lDl~~-lh~~~~~-----------~~~~~~~~~l~~l~~-~G~---ir~iGvs--~~~~~~l~~~~~~---~-----~ 173 (249)
.++|+.+ ||.+++. .++++.++++.+..+ .|. |+++=+. |.+.++++++.+. . .
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~ 282 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHL 282 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCc
Confidence 3577655 7776442 346677776666555 332 2344332 5555566555443 2 3
Q ss_pred eeEEeeccCccCcC------ch----hhHHHHHHHcCCeEEEcccCcc
Q 025658 174 ITAVQLEWSLWSRD------VE----AEIVPTCRELGIGIVAYSPLGR 211 (249)
Q Consensus 174 ~~~~q~~~n~~~~~------~~----~~~~~~~~~~gi~v~a~spl~~ 211 (249)
..++-++||.+... +. ....+..+++|+.+......+.
T Consensus 283 ~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~ 330 (347)
T PRK14453 283 YHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGS 330 (347)
T ss_pred ceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 56777888876321 11 2566678888999998887743
No 131
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=45.38 E-value=1.3e+02 Score=26.45 Aligned_cols=92 Identities=15% Similarity=0.146 Sum_probs=48.4
Q ss_pred HHcCCCccceEEeec-CCC-CCCHHHHHHHHHHHHHcCcccE-EEcCcc---cHHHHHHHhhcCC-eeEEeeccCccCcC
Q 025658 115 KRLDIDCIDLYYQHR-IDT-RVPIEVTIGELKKLVEEGKIKY-IGLSEA---SASTIRRAHAVHP-ITAVQLEWSLWSRD 187 (249)
Q Consensus 115 ~rLg~~~lDl~~lh~-~~~-~~~~~~~~~~l~~l~~~G~ir~-iGvs~~---~~~~l~~~~~~~~-~~~~q~~~n~~~~~ 187 (249)
+.+|.++||+-+.-. |+. +...++..+..+...+.=.+=- |..|.. +++.++++++... =.+.-+..+.-
T Consensus 86 ~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~e--- 162 (319)
T PRK04452 86 EEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEED--- 162 (319)
T ss_pred HHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCHH---
Confidence 577877777765433 221 1233334444444433333322 555532 6777777766522 11122222221
Q ss_pred chhhHHHHHHHcCCeEEEcccC
Q 025658 188 VEAEIVPTCRELGIGIVAYSPL 209 (249)
Q Consensus 188 ~~~~~~~~~~~~gi~v~a~spl 209 (249)
.-..+.+.|+++|..|++.+|.
T Consensus 163 n~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 163 NYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred HHHHHHHHHHHhCCeEEEEcHH
Confidence 1347888888888888888854
No 132
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.32 E-value=2.4e+02 Score=27.58 Aligned_cols=97 Identities=11% Similarity=0.080 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEeCcC--CcCCChHHHHHHHHhcCCCCCCeEEEe--ecCcccCC---C-CCc-CCC---
Q 025658 34 PKPESDMIALIHHAINSGITLLDTSD--IYGPHTNEILLGKALKGGMRERVELAT--KFGISFAD---G-KRE-IRG--- 101 (249)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~DtA~--~Yg~g~se~~lg~~l~~~~r~~~~i~t--K~~~~~~~---~-~~~-~~~--- 101 (249)
+.|.++.+++++...+.|+.-|-.+. +|-+-.+|..+++.+++.- .++-|++ ++++...- . ... ...
T Consensus 135 ~lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~~-~~i~V~~shev~p~~~~~eR~~TavlnA~L~p 213 (674)
T COG0145 135 PLDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREIG-PDIPVSLSHEVSPEIGEYERANTAVLNAYLSP 213 (674)
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHhc-CCceEEechhcchhcCcccchhhheeeeeehH
Confidence 56889999999999999999887764 4556789999999999843 5666666 77753310 0 000 011
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCC
Q 025658 102 DPAYVRAACEASLKRLDIDCIDLYYQHRIDT 132 (249)
Q Consensus 102 ~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~ 132 (249)
-.....++++..++.-|.+ ..++++.+...
T Consensus 214 i~~~yl~~v~~~l~~~g~~-~~l~~m~sdGg 243 (674)
T COG0145 214 ILRRYLEAVKDALKERGIK-ARLMVMQSDGG 243 (674)
T ss_pred HHHHHHHHHHHHHHhcCCC-ceeEEEecCCc
Confidence 1144556677777777754 57777777544
No 133
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=45.20 E-value=1.7e+02 Score=23.92 Aligned_cols=134 Identities=17% Similarity=0.190 Sum_probs=78.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHH
Q 025658 32 GPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACE 111 (249)
Q Consensus 32 ~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 111 (249)
.+..+.++..++++.|.+.|+.-+=..+.|- ....+.|+ ...+-|+|=++...+ ..+.+.-...++
T Consensus 12 ~p~~t~~~i~~lc~~A~~~~~~avcv~p~~v-----~~a~~~l~---~~~v~v~tVigFP~G------~~~~~~K~~E~~ 77 (211)
T TIGR00126 12 KADTTEEDIITLCAQAKTYKFAAVCVNPSYV-----PLAKELLK---GTEVRICTVVGFPLG------ASTTDVKLYETK 77 (211)
T ss_pred CCCCCHHHHHHHHHHHHhhCCcEEEeCHHHH-----HHHHHHcC---CCCCeEEEEeCCCCC------CCcHHHHHHHHH
Confidence 3445788999999999999988776655542 34445554 346888888875432 223333344455
Q ss_pred HHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHc--CcccEE--EcCcccHHHHHHHhhc---CCeeEEeec
Q 025658 112 ASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEE--GKIKYI--GLSEASASTIRRAHAV---HPITAVQLE 180 (249)
Q Consensus 112 ~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~i--Gvs~~~~~~l~~~~~~---~~~~~~q~~ 180 (249)
+.+ ++|.+-+|+++--..-...+.....+.+.+.++. |+.-.+ =.+-.+.+++.++.+. ...+.+...
T Consensus 78 ~Av-~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTs 152 (211)
T TIGR00126 78 EAI-KYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTS 152 (211)
T ss_pred HHH-HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 544 4799999998875532334455566666666653 432222 1112344554444332 445666666
No 134
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=45.09 E-value=1.8e+02 Score=24.27 Aligned_cols=98 Identities=16% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHH-cCcccEEEcCcccHHHHHHHhhcCCeeEEeeccCccC
Q 025658 107 RAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVE-EGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWS 185 (249)
Q Consensus 107 ~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~-~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~ 185 (249)
+..+-+.|.++|++++++- ....-+..++.++++.+ ...++..+++..+.+.++.+.+.. ++.+.+-++..+
T Consensus 22 k~~i~~~L~~~Gv~~iE~g------~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g-~~~i~i~~~~s~ 94 (259)
T cd07939 22 KLAIARALDEAGVDEIEVG------IPAMGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCG-VTAVHISIPVSD 94 (259)
T ss_pred HHHHHHHHHHcCCCEEEEe------cCCCCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCC-cCEEEEEEecCH
Q ss_pred c--------------CchhhHHHHHHHcCCeEEEcccCcc
Q 025658 186 R--------------DVEAEIVPTCRELGIGIVAYSPLGR 211 (249)
Q Consensus 186 ~--------------~~~~~~~~~~~~~gi~v~a~spl~~ 211 (249)
. ..-.+.+++|+++|+.+...-+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~ 134 (259)
T cd07939 95 IHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDAS 134 (259)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCC
No 135
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=44.81 E-value=2.3e+02 Score=25.32 Aligned_cols=137 Identities=11% Similarity=0.066 Sum_probs=66.9
Q ss_pred CCCCHHHHHHHH-------HHHHhcCCCEEeCcCCcCCChHHHHHHHHhc-----------------------------C
Q 025658 33 PPKPESDMIALI-------HHAINSGITLLDTSDIYGPHTNEILLGKALK-----------------------------G 76 (249)
Q Consensus 33 ~~~~~~~~~~~l-------~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~-----------------------------~ 76 (249)
...+.+++.+++ ++|.++|+.-++--..-| .+|-++|. +
T Consensus 137 r~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhG-----YLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~ 211 (363)
T COG1902 137 RELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHG-----YLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVRE 211 (363)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccc-----hHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHH
Confidence 345666665555 567788998887533221 22333332 2
Q ss_pred CCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcC-CCccceEEeecCC-CCCCHH---HHHHHHHHHHHcCc
Q 025658 77 GMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLD-IDCIDLYYQHRID-TRVPIE---VTIGELKKLVEEGK 151 (249)
Q Consensus 77 ~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg-~~~lDl~~lh~~~-~~~~~~---~~~~~l~~l~~~G~ 151 (249)
.-.+++.|..++..... . .....+.+.. ..+-+.|+..| ++|+++.--+... ...... -.....+.+++...
T Consensus 212 ~vg~~~~vg~Rls~~d~-~-~~~g~~~~e~-~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~ 288 (363)
T COG1902 212 AVGADFPVGVRLSPDDF-F-DGGGLTIEEA-VELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVR 288 (363)
T ss_pred HhCCCceEEEEECcccc-C-CCCCCCHHHH-HHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcC
Confidence 33445556666664331 0 0011222222 23555666667 5666666555431 111111 12233444555555
Q ss_pred ccEEEcC-cccHHHHHHHhhcCCeeEE
Q 025658 152 IKYIGLS-EASASTIRRAHAVHPITAV 177 (249)
Q Consensus 152 ir~iGvs-~~~~~~l~~~~~~~~~~~~ 177 (249)
+--+.+. -.++++.+++++.+..+.+
T Consensus 289 ~pvi~~G~i~~~~~Ae~~l~~g~aDlV 315 (363)
T COG1902 289 IPVIAVGGINDPEQAEEILASGRADLV 315 (363)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCCEE
Confidence 5555555 3667777777666544444
No 136
>PRK09061 D-glutamate deacylase; Validated
Probab=44.72 E-value=2.1e+02 Score=26.72 Aligned_cols=110 Identities=14% Similarity=0.092 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHH---H
Q 025658 39 DMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASL---K 115 (249)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL---~ 115 (249)
+..++++.|++.|+..|=+...|-.+.+...+-+.++...+....|........ ..+.....+++++.+ +
T Consensus 170 ~m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~-------~~~~~~e~~av~~~i~lA~ 242 (509)
T PRK09061 170 EILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLS-------NVDPRSSVDAYQELIAAAA 242 (509)
T ss_pred HHHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcc-------cCCchhHHHHHHHHHHHHH
Confidence 377788889999999998766674444555555565553444566666554211 001122222333333 3
Q ss_pred HcCCCccceEEeecCC-CCCCHHHHHHHHHHHHHcCcccEEEcC
Q 025658 116 RLDIDCIDLYYQHRID-TRVPIEVTIGELKKLVEEGKIKYIGLS 158 (249)
Q Consensus 116 rLg~~~lDl~~lh~~~-~~~~~~~~~~~l~~l~~~G~ir~iGvs 158 (249)
..|.. +.+.|-.. ...+..+.++.+++++++|.--..-++
T Consensus 243 ~~G~r---v~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~ 283 (509)
T PRK09061 243 ETGAH---MHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAY 283 (509)
T ss_pred HhCCC---EEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEec
Confidence 44543 45556542 123467788899999999854444443
No 137
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=44.46 E-value=1.6e+02 Score=23.54 Aligned_cols=149 Identities=11% Similarity=0.031 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHH
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLK 115 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 115 (249)
+.+++.++++.+++.|++..|.-...= ...-..+|+... ++++++.-= ....+.+++.++....
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~~~~l-~p~m~~iG~~w~---~gei~va~~------------~~a~~~~~~~l~~l~~ 73 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELIEKGL-MAGMGVVGKLFE---DGELFLPHV------------MMSADAMLAGIKVLTP 73 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHHc---CCCccHHHH------------HHHHHHHHHHHHHHHH
Confidence 667899999999999988666321110 012222333332 234433111 1234445555555555
Q ss_pred HcCC----CccceEEeecCCCCCCHHHHHHHHHHHHHcCc-ccEEEcCcccHHHHHHHhhcCCeeEEeeccCccCcC-ch
Q 025658 116 RLDI----DCIDLYYQHRIDTRVPIEVTIGELKKLVEEGK-IKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRD-VE 189 (249)
Q Consensus 116 rLg~----~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~ 189 (249)
.+.. +.---+++-.+..+.+--...=...-++..|. +.++|. +.+.+.+.+.+....++++.+.+...... .-
T Consensus 74 ~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~ 152 (197)
T TIGR02370 74 EMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQ 152 (197)
T ss_pred HhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHHcCCCEEEEccccccCHHHH
Confidence 5532 11123445444433332223223334556664 456674 55777788887778888888877655432 22
Q ss_pred hhHHHHHHHcCC
Q 025658 190 AEIVPTCRELGI 201 (249)
Q Consensus 190 ~~~~~~~~~~gi 201 (249)
.++++.+++.|.
T Consensus 153 ~~~i~~l~~~~~ 164 (197)
T TIGR02370 153 KDINDKLKEEGY 164 (197)
T ss_pred HHHHHHHHHcCC
Confidence 478888888854
No 138
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=44.28 E-value=1.5e+02 Score=27.25 Aligned_cols=103 Identities=12% Similarity=0.091 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCC--CCHHHHHHHHHHHHHc-Cccc---------EEEcCcccHHHHH--
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR--VPIEVTIGELKKLVEE-GKIK---------YIGLSEASASTIR-- 166 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~--~~~~~~~~~l~~l~~~-G~ir---------~iGvs~~~~~~l~-- 166 (249)
.+.+...+ +-+.|.++|++.|.+.-=...+.. .--++.|+.++.+++. ..++ .+|.+++..+.++
T Consensus 23 ~~t~dkl~-ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~ 101 (448)
T PRK12331 23 MTTEEMLP-ILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESF 101 (448)
T ss_pred cCHHHHHH-HHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHH
Confidence 44444444 555688889988888300001100 0112367788887765 2333 2566665544433
Q ss_pred --HHhhcCCeeEEeeccCccCcCchhhHHHHHHHcCCeEEE
Q 025658 167 --RAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVA 205 (249)
Q Consensus 167 --~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a 205 (249)
++.+ ..++++.+-..+.+...-.+.+++++++|..+..
T Consensus 102 v~~A~~-~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 102 VQKSVE-NGIDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHH-CCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 3333 3456666555544433344788999999976543
No 139
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=44.12 E-value=2.3e+02 Score=25.01 Aligned_cols=24 Identities=8% Similarity=0.198 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHhcCCCEEeCc
Q 025658 35 KPESDMIALIHHAINSGITLLDTS 58 (249)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA 58 (249)
.+.++..++++...++||..|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 366889999999999999999995
No 140
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=44.06 E-value=1.3e+02 Score=23.97 Aligned_cols=109 Identities=18% Similarity=0.194 Sum_probs=52.2
Q ss_pred CcccCcceecccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhc---C-CCCCCeEEEeecC
Q 025658 14 GLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALK---G-GMRERVELATKFG 89 (249)
Q Consensus 14 g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~---~-~~r~~~~i~tK~~ 89 (249)
|+++--|||++... .+ .+..+.|. -+++-+-.+|+..+...-.-++.+-.+++ + .|.-.|++++-+.
T Consensus 33 ~~~~iNLGfsG~~~-------le-~~~a~~ia-~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~ 103 (178)
T PF14606_consen 33 GLDVINLGFSGNGK-------LE-PEVADLIA-EIDADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIP 103 (178)
T ss_dssp T-EEEEEE-TCCCS----------HHHHHHHH-HS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE---
T ss_pred CCCeEeeeecCccc-------cC-HHHHHHHh-cCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCC
Confidence 56677777766432 12 33444444 34666677777666442222333333333 3 5667788888777
Q ss_pred cccCCCCCcCCCCHHHHHHHHHHHHHHc-CCCccceEEeecCC
Q 025658 90 ISFADGKREIRGDPAYVRAACEASLKRL-DIDCIDLYYQHRID 131 (249)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~~~~~sL~rL-g~~~lDl~~lh~~~ 131 (249)
.....-........+..++.+++..++| .-..-++++++..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 104 YPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDGEE 146 (178)
T ss_dssp -TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-HHH
T ss_pred ccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCchh
Confidence 5432111222456677888888888888 22346888888754
No 141
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=44.01 E-value=1.1e+02 Score=27.23 Aligned_cols=94 Identities=12% Similarity=0.220 Sum_probs=56.7
Q ss_pred eEEeecCCCC-----------CCHHHHHHHHHHHHH-cCc---ccEEEcC--cccHHHHHHH---hhcCCeeEEeeccCc
Q 025658 124 LYYQHRIDTR-----------VPIEVTIGELKKLVE-EGK---IKYIGLS--EASASTIRRA---HAVHPITAVQLEWSL 183 (249)
Q Consensus 124 l~~lh~~~~~-----------~~~~~~~~~l~~l~~-~G~---ir~iGvs--~~~~~~l~~~---~~~~~~~~~q~~~n~ 183 (249)
.+-||.+++. .+++++++++.++.+ .|+ |+++=+. |-+.+++.++ +...++.++-++||.
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp 297 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNP 297 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEeccc
Confidence 3668988642 236788888877654 332 2344333 3444555544 444556777788887
Q ss_pred cCcC----chh----hHHHHHHHcCCeEEEcccCc------cccCCCC
Q 025658 184 WSRD----VEA----EIVPTCRELGIGIVAYSPLG------RGFFSSG 217 (249)
Q Consensus 184 ~~~~----~~~----~~~~~~~~~gi~v~a~spl~------~G~l~~~ 217 (249)
+... +.. ...+..+++|+.+......+ +|.|..+
T Consensus 298 ~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~di~aaCGqL~~~ 345 (355)
T TIGR00048 298 FPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDDIDAACGQLRAK 345 (355)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcchhhcCCcchhh
Confidence 6431 121 34556777899999888874 4666543
No 142
>smart00642 Aamy Alpha-amylase domain.
Probab=43.94 E-value=35 Score=26.68 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=18.1
Q ss_pred hhHHHHHHHcCCeEEEcccCcc
Q 025658 190 AEIVPTCRELGIGIVAYSPLGR 211 (249)
Q Consensus 190 ~~~~~~~~~~gi~v~a~spl~~ 211 (249)
..+++.|+++||.|+.=-++..
T Consensus 73 ~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 73 KELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHHHCCCEEEEEECCCC
Confidence 4899999999999997666644
No 143
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=43.93 E-value=1.8e+02 Score=23.96 Aligned_cols=25 Identities=8% Similarity=0.198 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCC
Q 025658 36 PESDMIALIHHAINSGITLLDTSDI 60 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~ 60 (249)
+.++..++++...+.||..|+....
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~ 41 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSG 41 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccC
Confidence 5678999999999999999997643
No 144
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=43.83 E-value=67 Score=25.80 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=41.9
Q ss_pred HHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcC-cccHHHHHHHhhcCCeeEEeeccCc
Q 025658 112 ASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLS-EASASTIRRAHAVHPITAVQLEWSL 183 (249)
Q Consensus 112 ~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n~ 183 (249)
..+..+|.+|+-+.+ +|.....+ ..+.+.++.+.-.-+.+||. |-+.+.+.+.++...++++|++-+-
T Consensus 13 ~~~~~~g~d~~Gfi~--~~~S~R~v--~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 13 RLAAELGADYLGFIF--YPKSPRYV--SPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHHcCCCEEeeec--CCCCCCcc--CHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 345778988887753 34322222 34445555555555588887 4577788888888999999976544
No 145
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=43.38 E-value=2.3e+02 Score=24.91 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHhcCCCEEeCc
Q 025658 35 KPESDMIALIHHAINSGITLLDTS 58 (249)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA 58 (249)
.+.++..++++..-++||..|+..
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 366888899999899999999994
No 146
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=42.98 E-value=2.3e+02 Score=25.12 Aligned_cols=183 Identities=15% Similarity=0.092 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHH---HhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHH
Q 025658 35 KPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGK---ALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACE 111 (249)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~---~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 111 (249)
...++-.+.++.|.+.|+..+=|+-.++.+..|..+.. .++......+.+..-+.+..-. .-+.+.+. .
T Consensus 13 ~~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~~~~~~~~ell~~Anklg~~vivDvnPsil~---~l~~S~~~-----l 84 (360)
T COG3589 13 SPKEKDIAYIDRMHKYGFKRIFTSLLIPEEDAELYFHRFKELLKEANKLGLRVIVDVNPSILK---ELNISLDN-----L 84 (360)
T ss_pred CcchhHHHHHHHHHHcCccceeeecccCCchHHHHHHHHHHHHHHHHhcCcEEEEEcCHHHHh---hcCCChHH-----H
Confidence 35567889999999999999999999997665433332 2222344555555444321100 00011111 1
Q ss_pred HHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhcCCeeEEee--ccCccCcC--
Q 025658 112 ASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQL--EWSLWSRD-- 187 (249)
Q Consensus 112 ~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~--~~n~~~~~-- 187 (249)
..++.+|.+- + +.|...+. ++..++-+++.--.+-.|+-+. .+..+++..+ ...++ -.|...+.
T Consensus 85 ~~f~e~G~~g---l---RlD~gfS~----eei~~ms~~~lkieLN~S~it~-~l~~l~~~~a-n~~nl~~cHNyYPr~yT 152 (360)
T COG3589 85 SRFQELGVDG---L---RLDYGFSG----EEIAEMSKNPLKIELNASTITE-LLDSLLAYKA-NLENLEGCHNYYPRPYT 152 (360)
T ss_pred HHHHHhhhhh---e---eecccCCH----HHHHHHhcCCeEEEEchhhhHH-HHHHHHHhcc-chhhhhhcccccCCccc
Confidence 2233333221 1 11232322 3344555666545666666655 5555554321 11111 11222221
Q ss_pred -----chhhHHHHHHHcCCeEEEcccCccccCCCCCCCCC--CCChhhHhhhccchHHH
Q 025658 188 -----VEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVE--SFSKEDFRQVCKSTKQL 239 (249)
Q Consensus 188 -----~~~~~~~~~~~~gi~v~a~spl~~G~l~~~~~~~~--~~~~~~~~~~~~~~~~~ 239 (249)
.-.+.-++.+++|+...||-+-.+.- |.+-+.. .|.-+++|...|-.++-
T Consensus 153 GLS~e~f~~kn~~fk~~~i~t~AFis~~~~~--g~r~~~~~GlpTlE~hR~~~p~~qak 209 (360)
T COG3589 153 GLSREHFKRKNEIFKEYNIKTAAFISSDGAE--GPRGPLYEGLPTLEAHRYVEPFVQAK 209 (360)
T ss_pred CccHHHHHHHHHHHHhcCCceEEEEecCCcC--CcccccccCccchHHhcCCCHHHHHH
Confidence 22356678889999999988776553 2222222 23334566655555443
No 147
>COG0218 Predicted GTPase [General function prediction only]
Probab=42.91 E-value=1.8e+02 Score=23.62 Aligned_cols=100 Identities=11% Similarity=-0.056 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHh------cCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHH
Q 025658 38 SDMIALIHHAIN------SGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACE 111 (249)
Q Consensus 38 ~~~~~~l~~A~~------~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 111 (249)
+...+.+..-++ ..+-.+|.-..-- ..++.+=+++......=+++.||.-. .......+.+.
T Consensus 91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~~~i~~~vv~tK~DK----------i~~~~~~k~l~ 158 (200)
T COG0218 91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLELGIPVIVVLTKADK----------LKKSERNKQLN 158 (200)
T ss_pred HHHHHHHHHHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHHcCCCeEEEEEcccc----------CChhHHHHHHH
Confidence 445555555443 3566777654443 56777888888867778899999863 44566777788
Q ss_pred HHHHHcCCCccce--EEeecCCCCCCHHHHHHHHHHHHHc
Q 025658 112 ASLKRLDIDCIDL--YYQHRIDTRVPIEVTIGELKKLVEE 149 (249)
Q Consensus 112 ~sL~rLg~~~lDl--~~lh~~~~~~~~~~~~~~l~~l~~~ 149 (249)
...++|+.+..|- +++........+++.++.+.+....
T Consensus 159 ~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 159 KVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 8888998877665 5555555566788888888776653
No 148
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=42.63 E-value=74 Score=26.05 Aligned_cols=101 Identities=17% Similarity=0.107 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhc-CCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHH
Q 025658 36 PESDMIALIHHAINS-GITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASL 114 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL 114 (249)
+.+++..+.+...+. |+-|...++=|= +.+...+..+..+. .++++... +.+.+.+ .+.+
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~SpR~V---s~~~a~~i~~~v~~-----~~~VgVf~-------n~~~~~i----~~i~ 71 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSPRYV---SPEQAREIASAVPK-----VKVVGVFV-------NESIEEI----LEIA 71 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCCCcC---CHHHHHHHHHhCCC-----CCEEEEEC-------CCCHHHH----HHHH
Confidence 446666666664444 666666677775 55555555555332 22444332 2334333 4455
Q ss_pred HHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccH
Q 025658 115 KRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASA 162 (249)
Q Consensus 115 ~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~ 162 (249)
+.++ +|++|||...+.. ..+.|.+...-..++++.++.-..
T Consensus 72 ~~~~---ld~VQlHG~e~~~----~~~~l~~~~~~~v~kai~v~~~~~ 112 (208)
T COG0135 72 EELG---LDAVQLHGDEDPE----YIDQLKEELGVPVIKAISVSEEGD 112 (208)
T ss_pred HhcC---CCEEEECCCCCHH----HHHHHHhhcCCceEEEEEeCCccc
Confidence 5555 7999999974422 333333333456889999986433
No 149
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=42.01 E-value=2e+02 Score=23.84 Aligned_cols=152 Identities=15% Similarity=0.166 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCCEEeCcCCcCC---ChHHHHHHHHhcC---CCC-CCeEEEeecCcccCCCCCcCCCCHHHHHHHHHH
Q 025658 40 MIALIHHAINSGITLLDTSDIYGP---HTNEILLGKALKG---GMR-ERVELATKFGISFADGKREIRGDPAYVRAACEA 112 (249)
Q Consensus 40 ~~~~l~~A~~~Gi~~~DtA~~Yg~---g~se~~lg~~l~~---~~r-~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 112 (249)
..+.+++|.+.|+..|=+.+|... +..+..+-...+. .++ -++-|.+=+-....+. . ...-.+.
T Consensus 18 ~~e~~~~A~~~g~~~~~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~G~E~~~~~~-----~----~~d~~~~ 88 (237)
T COG1387 18 PEEMVEAAIELGLEYIAITDHAPFLRVGLDAELLKYFIEEIRELKKEYDIKILIGIEVDILPD-----G----SLDFLDE 88 (237)
T ss_pred HHHHHHHHHHcCCeEEEEeccccccccCCCHHHHHHHHHHHHHHHHhcCceEEEeEEEEecCC-----C----Ccccchh
Confidence 445599999999999999888764 4444444443332 111 1222222222111111 1 1111223
Q ss_pred HHHHcCCCccceEEeecCC-CCCCHHHHHHHHHHHHHcCcccEEEcCcc-------------cHHHHHHHhhcCCeeEEe
Q 025658 113 SLKRLDIDCIDLYYQHRID-TRVPIEVTIGELKKLVEEGKIKYIGLSEA-------------SASTIRRAHAVHPITAVQ 178 (249)
Q Consensus 113 sL~rLg~~~lDl~~lh~~~-~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-------------~~~~l~~~~~~~~~~~~q 178 (249)
-+..|+ .=+.-+|.+. .........+.+..+...+.|..+|=-+. ..+.+.++++... ..+.
T Consensus 89 ~~~~lD---~vi~svH~~~~~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~ale 164 (237)
T COG1387 89 ILKELD---YVIASVHELNFEDQDEEDYTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEKNG-KALE 164 (237)
T ss_pred hHhhcC---EEEEEeccCCccccCHHHHHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHHhC-cEEe
Confidence 333332 2345568763 33445667889999999999998887765 2333334433322 2233
Q ss_pred eccCccCcCchhhHHHHHHHcCCeEE
Q 025658 179 LEWSLWSRDVEAEIVPTCRELGIGIV 204 (249)
Q Consensus 179 ~~~n~~~~~~~~~~~~~~~~~gi~v~ 204 (249)
++-+.-...+...++..|++.|+.+.
T Consensus 165 ins~~~~~~~~~~~~~~~~e~G~~~~ 190 (237)
T COG1387 165 INSRPGRLDPNSEILRLARELGVKLA 190 (237)
T ss_pred ecCCcCccCchHHHHHHHHHhCCeEE
Confidence 33333333455689999999998765
No 150
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=41.89 E-value=2.4e+02 Score=24.61 Aligned_cols=122 Identities=17% Similarity=0.082 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHhc-CCCEEeCcCCcCCChHHHHHH---HHhcCC-CCCCeEEEeecCcccCCCCCcCCCCHHHHHHHH
Q 025658 36 PESDMIALIHHAINS-GITLLDTSDIYGPHTNEILLG---KALKGG-MRERVELATKFGISFADGKREIRGDPAYVRAAC 110 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~g~se~~lg---~~l~~~-~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 110 (249)
+.++..++++...+. |++-+--+-.-..=.+...+. +.+++. ....+-+.|+.... .+..+.+.+
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~----------~p~rit~el 189 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVA----------DPARVTPAL 189 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCccc----------ChhhcCHHH
Confidence 556778888876644 887553221100001122222 333332 23346677776422 123344444
Q ss_pred HHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEE------EcCcccHHHHHHHhh
Q 025658 111 EASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYI------GLSEASASTIRRAHA 170 (249)
Q Consensus 111 ~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~i------Gvs~~~~~~l~~~~~ 170 (249)
-+.|++.|.. ..+.+|...+..-.+++.++++.|++.|..-.+ |+ |.+.+.+.++.+
T Consensus 190 l~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~ 252 (321)
T TIGR03822 190 IAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMR 252 (321)
T ss_pred HHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHH
Confidence 4566666732 357778754444357899999999999963211 32 566666665543
No 151
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=41.81 E-value=1.9e+02 Score=23.48 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhcCCCEEeCc
Q 025658 37 ESDMIALIHHAINSGITLLDTS 58 (249)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~DtA 58 (249)
+|.....+++|++.|+..|++-
T Consensus 13 pENTl~af~~A~~~Gad~iE~D 34 (226)
T cd08568 13 PENTLEAFKKAIEYGADGVELD 34 (226)
T ss_pred CcchHHHHHHHHHcCcCEEEEE
Confidence 4778899999999999999853
No 152
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=41.57 E-value=88 Score=22.56 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=33.9
Q ss_pred cCcccHHHHHHHhhcCCeeEEeeccCccCcCchhhHHHHHHHcCCeEEEccc
Q 025658 157 LSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSP 208 (249)
Q Consensus 157 vs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~sp 208 (249)
.+..+++++..+....+++++-+-...-.+.+..++.++++++||++-.+..
T Consensus 36 ~~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 36 LSDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred cccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 4456677777665543356665555444444566889999999999876643
No 153
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=40.63 E-value=2e+02 Score=23.33 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCc
Q 025658 104 AYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSE 159 (249)
Q Consensus 104 ~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 159 (249)
..+.+.+++.++.+|.+ +.++ .+...+..+..+.++++.++| +..|=++.
T Consensus 14 ~~~~~g~~~~a~~~g~~---~~~~--~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~ 63 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYE---VEIV--FDAQNDPEEQIEQIEQAISQG-VDGIIVSP 63 (257)
T ss_dssp HHHHHHHHHHHHHHTCE---EEEE--EESTTTHHHHHHHHHHHHHTT-ESEEEEES
T ss_pred HHHHHHHHHHHHHcCCE---EEEe--CCCCCCHHHHHHHHHHHHHhc-CCEEEecC
Confidence 45778888888888853 2232 334445577778888887777 55555543
No 154
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=40.42 E-value=1.7e+02 Score=26.70 Aligned_cols=106 Identities=20% Similarity=0.280 Sum_probs=69.2
Q ss_pred HHHHHHHhcCCCEEeCcCCcC-CChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCCC
Q 025658 42 ALIHHAINSGITLLDTSDIYG-PHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDID 120 (249)
Q Consensus 42 ~~l~~A~~~Gi~~~DtA~~Yg-~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~~ 120 (249)
..+.++++.| .+-..-.|| +|.--..+++.|...-...+.-.+=+ ..+.+.+++.++++.++++..
T Consensus 37 ~~lrr~v~~~--~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv-----------~~gvkdlr~i~e~a~~~~~~g 103 (436)
T COG2256 37 KPLRRAVEAG--HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV-----------TSGVKDLREIIEEARKNRLLG 103 (436)
T ss_pred chHHHHHhcC--CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc-----------cccHHHHHHHHHHHHHHHhcC
Confidence 4688888876 223334577 46677777888876222333322222 245788999999998888755
Q ss_pred ccceEEeecCCCCCCH-HHHHHHHHHHHHcCcccEEEcCcccHH
Q 025658 121 CIDLYYQHRIDTRVPI-EVTIGELKKLVEEGKIKYIGLSEASAS 163 (249)
Q Consensus 121 ~lDl~~lh~~~~~~~~-~~~~~~l~~l~~~G~ir~iGvs~~~~~ 163 (249)
+=-++++... .++ ..+-++|--.++.|.|-.||.++-+|.
T Consensus 104 r~tiLflDEI---HRfnK~QQD~lLp~vE~G~iilIGATTENPs 144 (436)
T COG2256 104 RRTILFLDEI---HRFNKAQQDALLPHVENGTIILIGATTENPS 144 (436)
T ss_pred CceEEEEehh---hhcChhhhhhhhhhhcCCeEEEEeccCCCCC
Confidence 5455665332 111 235678888999999999999976653
No 155
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=40.23 E-value=1.3e+02 Score=27.43 Aligned_cols=88 Identities=13% Similarity=0.160 Sum_probs=54.3
Q ss_pred HHHcCCCccceEEeecCCC-CCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhc--------CCeeEEeeccCcc
Q 025658 114 LKRLDIDCIDLYYQHRIDT-RVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV--------HPITAVQLEWSLW 184 (249)
Q Consensus 114 L~rLg~~~lDl~~lh~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--------~~~~~~q~~~n~~ 184 (249)
++.||++|. ++..|=. .. ...+-...+-+.|-...+|....+++++++.+.. .||-++-+ .+..
T Consensus 7 ~~~lgiryP---ii~gpMa~Gi---ss~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~ 79 (418)
T cd04742 7 KEDYGLRYA---YVAGAMARGI---ASAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPD 79 (418)
T ss_pred HHHhCCCcc---EECCcccCCC---CCHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCC
Confidence 466777663 3333311 11 1234445666899999999999999988876543 24444443 2222
Q ss_pred CcCchhhHHHHHHHcCCeEEEccc
Q 025658 185 SRDVEAEIVPTCRELGIGIVAYSP 208 (249)
Q Consensus 185 ~~~~~~~~~~~~~~~gi~v~a~sp 208 (249)
+...+.+.++.+.++||.++..+-
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEecc
Confidence 222245789999999999876654
No 156
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=40.12 E-value=2.5e+02 Score=24.47 Aligned_cols=133 Identities=11% Similarity=0.109 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEe----------CcCCcCCC--hHHHHHHHHhcCCC-CCCeEEEeecCcccCCCCCcCCCC
Q 025658 36 PESDMIALIHHAINSGITLLD----------TSDIYGPH--TNEILLGKALKGGM-RERVELATKFGISFADGKREIRGD 102 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~D----------tA~~Yg~g--~se~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~ 102 (249)
++++..++.+.+.+.|+..|| +...||.. ...+.+.+.++... .-++=|+.|+.....+ ..+
T Consensus 65 ~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~-----~~~ 139 (318)
T TIGR00742 65 DPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDP-----LDS 139 (318)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCC-----cch
Confidence 567788888888889999999 34445532 23344555555411 1145688888643311 011
Q ss_pred HHHHHHHHHHHHHHcCCCccceEEeecCCC-CCC--------H-HHHHHHHHHHHHcC-cccEEEcCc-ccHHHHHHHhh
Q 025658 103 PAYVRAACEASLKRLDIDCIDLYYQHRIDT-RVP--------I-EVTIGELKKLVEEG-KIKYIGLSE-ASASTIRRAHA 170 (249)
Q Consensus 103 ~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~-~~~--------~-~~~~~~l~~l~~~G-~ir~iGvs~-~~~~~l~~~~~ 170 (249)
.+.+. .+-+.++..| +|.+.+|.-.. ... . .-.|+...++++.- .|--||..+ ++.++..+.+.
T Consensus 140 ~~~~~-~~~~~l~~~G---~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~ 215 (318)
T TIGR00742 140 YEFLC-DFVEIVSGKG---CQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS 215 (318)
T ss_pred HHHHH-HHHHHHHHcC---CCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh
Confidence 22222 3344455556 78889997532 111 0 11577777888765 677787765 66777776664
Q ss_pred cCCeeEEee
Q 025658 171 VHPITAVQL 179 (249)
Q Consensus 171 ~~~~~~~q~ 179 (249)
..+.+++
T Consensus 216 --g~dgVMi 222 (318)
T TIGR00742 216 --HVDGVMV 222 (318)
T ss_pred --CCCEEEE
Confidence 3455554
No 157
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=39.93 E-value=2.5e+02 Score=24.92 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCc-ccEEEcCcccHHHHHHHhhcCCeeEEe
Q 025658 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGK-IKYIGLSEASASTIRRAHAVHPITAVQ 178 (249)
Q Consensus 100 ~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q 178 (249)
..+.+...+ +-+.|.++|+++|.+- +|.. -+..++.++++.+.+. .+..+++....+.++.+.+.+ ++.+.
T Consensus 19 ~~s~~~k~~-ia~~L~~~Gv~~IEvG---~p~~---~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g-~~~i~ 90 (365)
T TIGR02660 19 AFTAAEKLA-IARALDEAGVDELEVG---IPAM---GEEERAVIRAIVALGLPARLMAWCRARDADIEAAARCG-VDAVH 90 (365)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEe---CCCC---CHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCC-cCEEE
Confidence 355555444 5566999999888874 3322 2344677777777643 677777878888888877652 23333
Q ss_pred eccCccC--------cCc------hhhHHHHHHHcCCeEE
Q 025658 179 LEWSLWS--------RDV------EAEIVPTCRELGIGIV 204 (249)
Q Consensus 179 ~~~n~~~--------~~~------~~~~~~~~~~~gi~v~ 204 (249)
+-....+ ... -.+.+++++++|+.+.
T Consensus 91 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 91 ISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 3322211 111 1268889999998754
No 158
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=39.47 E-value=2.6e+02 Score=24.40 Aligned_cols=131 Identities=17% Similarity=0.145 Sum_probs=70.0
Q ss_pred HHHHHHHHhcCCCEEeCcC-------------------CcCCChHH---H---HHHHHhcCCCCCCeEEEeecCcccCCC
Q 025658 41 IALIHHAINSGITLLDTSD-------------------IYGPHTNE---I---LLGKALKGGMRERVELATKFGISFADG 95 (249)
Q Consensus 41 ~~~l~~A~~~Gi~~~DtA~-------------------~Yg~g~se---~---~lg~~l~~~~r~~~~i~tK~~~~~~~~ 95 (249)
.+..+.|.++|+.-|+.-. .|| |.-| + .+=+++++.-.+++.|..|+......
T Consensus 157 ~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yG-gsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~- 234 (336)
T cd02932 157 VAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYG-GSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV- 234 (336)
T ss_pred HHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccC-CCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccC-
Confidence 3444567788999988742 122 1111 1 22233343334567888898753200
Q ss_pred CCcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCC--C--CCH--HHHHHHHHHHHHcCcccEEEcCcc-cHHHHHHH
Q 025658 96 KREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDT--R--VPI--EVTIGELKKLVEEGKIKYIGLSEA-SASTIRRA 168 (249)
Q Consensus 96 ~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~--~--~~~--~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~ 168 (249)
....+.+... .+-+.|+..|++++ -+|.... . .+. ...++.+.++++.-.+--++.... +++..+++
T Consensus 235 --~~g~~~~e~~-~ia~~Le~~gvd~i---ev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~ 308 (336)
T cd02932 235 --EGGWDLEDSV-ELAKALKELGVDLI---DVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAI 308 (336)
T ss_pred --CCCCCHHHHH-HHHHHHHHcCCCEE---EECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHH
Confidence 0123343333 23345666775554 4442111 0 111 113456667777667777777764 77888888
Q ss_pred hhcCCeeEEee
Q 025658 169 HAVHPITAVQL 179 (249)
Q Consensus 169 ~~~~~~~~~q~ 179 (249)
++....+.+++
T Consensus 309 l~~g~aD~V~~ 319 (336)
T cd02932 309 LESGRADLVAL 319 (336)
T ss_pred HHcCCCCeehh
Confidence 88776777765
No 159
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=39.30 E-value=2.4e+02 Score=23.93 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEeCcC
Q 025658 34 PKPESDMIALIHHAINSGITLLDTSD 59 (249)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~DtA~ 59 (249)
..+.++..++.....+.||..||...
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~ 42 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWG 42 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccC
Confidence 34667788888888899999999874
No 160
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.04 E-value=2.8e+02 Score=24.70 Aligned_cols=86 Identities=12% Similarity=0.137 Sum_probs=53.7
Q ss_pred EeecCCCC-----------CCHHHHHHHHHHHH-HcCc---ccEEEcC--cccHHHHHHHh---hcCCeeEEeeccCccC
Q 025658 126 YQHRIDTR-----------VPIEVTIGELKKLV-EEGK---IKYIGLS--EASASTIRRAH---AVHPITAVQLEWSLWS 185 (249)
Q Consensus 126 ~lh~~~~~-----------~~~~~~~~~l~~l~-~~G~---ir~iGvs--~~~~~~l~~~~---~~~~~~~~q~~~n~~~ 185 (249)
-||.+++. .+++++++++.++. +.|+ |+++=+. |-+.+++.++. ...+..++-++||...
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~ 304 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHE 304 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCC
Confidence 38988653 24567888777555 3333 3455554 45566655554 3355688888999765
Q ss_pred cC----chh----hHHHHHHHcCCeEEEcccCcc
Q 025658 186 RD----VEA----EIVPTCRELGIGIVAYSPLGR 211 (249)
Q Consensus 186 ~~----~~~----~~~~~~~~~gi~v~a~spl~~ 211 (249)
.. +.. ...+..+++|+.+......+.
T Consensus 305 ~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~ 338 (356)
T PRK14462 305 GSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGL 338 (356)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 31 222 345566778999998887744
No 161
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=38.95 E-value=2.2e+02 Score=23.41 Aligned_cols=129 Identities=13% Similarity=0.111 Sum_probs=68.5
Q ss_pred CCEEeC-cCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCCCccceEEeecC
Q 025658 52 ITLLDT-SDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRI 130 (249)
Q Consensus 52 i~~~Dt-A~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~ 130 (249)
++.++. +..|+. .+++.+.++.++ -.+++..+.|+..... .........+.+.+.+-+.++-|| +.+..+++.-|
T Consensus 19 F~~VEvn~TFY~~-P~~~t~~~W~~~-~p~~F~F~vK~~~~iT-H~~~l~~~~~~~~~~F~~~~~~L~-~klg~iL~Q~P 94 (230)
T PF01904_consen 19 FNTVEVNSTFYRI-PSPETVARWREQ-TPEGFRFSVKAPQLIT-HERRLRDCAEELWRRFLEALEPLG-EKLGPILFQFP 94 (230)
T ss_dssp -SEEEE-HHCCSS-S-HHHHHHHHCT-S-TT-EEEEE--CCCC-CCCHCGSSHHHHHHHHHHHCHHHH-T-EEEEEEE--
T ss_pred CCeEEECcccCCC-CCHHHHHHHHhh-CCCCeEEEEeccHHhe-ecccccccHHHHHHHHHHHHHHHh-hcceEEEEEcC
Confidence 566655 445653 477888999887 4578999999985542 111112345666466666999998 89999999998
Q ss_pred CCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhcCCeeEEeeccCccCcCchhhHHHHHHHcCCeEEEc
Q 025658 131 DTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 206 (249)
Q Consensus 131 ~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 206 (249)
..-..-.+.++.|..+.+.-. ....-.+.+.---+. ..+++++++++|+..+.-
T Consensus 95 psf~~~~~~~~~l~~~l~~~~-------------------~~~~~avE~R~~sW~---~~~~~~~l~~~~~~~v~~ 148 (230)
T PF01904_consen 95 PSFRFTPENLERLDAFLDRLP-------------------RGFRYAVEFRHPSWF---TEEVFELLREHGVALVIA 148 (230)
T ss_dssp TT--S-HHHHHHHHHHHHHTT--------------------TS-EEEE--BGGGG---CHHHHHHHHHTT-EEEEE
T ss_pred CCcCCCHHHHHHHHHHHhhcc-------------------cccceEEecCCcchh---hHHHHHHHHHcCCEEEEe
Confidence 754444555555554443321 011223333222222 247888888888776643
No 162
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=38.76 E-value=3e+02 Score=24.91 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCC
Q 025658 40 MIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDI 119 (249)
Q Consensus 40 ~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~ 119 (249)
..+-=-+|+|.|+--+-||..-. +....=.-|. ...|.|+-+++++.. ....+..+|++||+
T Consensus 66 vlE~RiAaLEGG~aa~a~aSG~A---A~~~ai~~la-~aGD~iVss~~LYGG--------------T~~lf~~tl~~~Gi 127 (426)
T COG2873 66 VLEERIAALEGGVAALAVASGQA---AITYAILNLA-GAGDNIVSSSKLYGG--------------TYNLFSHTLKRLGI 127 (426)
T ss_pred HHHHHHHHhhcchhhhhhccchH---HHHHHHHHhc-cCCCeeEeeccccCc--------------hHHHHHHHHHhcCc
Confidence 44444569999999888876432 2222222222 267888888888722 34567888999995
Q ss_pred C
Q 025658 120 D 120 (249)
Q Consensus 120 ~ 120 (249)
+
T Consensus 128 ~ 128 (426)
T COG2873 128 E 128 (426)
T ss_pred E
Confidence 3
No 163
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=38.71 E-value=2.4e+02 Score=23.81 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHc--CcccEEEcCccc
Q 025658 136 IEVTIGELKKLVEE--GKIKYIGLSEAS 161 (249)
Q Consensus 136 ~~~~~~~l~~l~~~--G~ir~iGvs~~~ 161 (249)
..++++.++.+++. |.=-.+|+||-+
T Consensus 173 ~~~~l~~i~~l~~~~pg~p~l~G~Sn~S 200 (261)
T PRK07535 173 GPEVLETIRRIKELYPKVHTTCGLSNIS 200 (261)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCc
Confidence 45678888888887 888899999844
No 164
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=38.70 E-value=46 Score=24.21 Aligned_cols=27 Identities=22% Similarity=0.398 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcC
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYG 62 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg 62 (249)
+.+.+.+....+++.|++.||.+..|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 556788999999999999999999996
No 165
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=38.59 E-value=2.3e+02 Score=23.53 Aligned_cols=103 Identities=19% Similarity=0.167 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcC--C-------CCCC----------eEEEeecCcccCCCC
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG--G-------MRER----------VELATKFGISFADGK 96 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~--~-------~r~~----------~~i~tK~~~~~~~~~ 96 (249)
+.+...+++++|-..|.+|+|.|.. .+++..+... . ..+. ++=+.-+-..+..+
T Consensus 25 d~~~V~~i~~AA~~ggAt~vDIAad------p~LV~~~~~~s~lPICVSaVep~~f~~aV~AGAdliEIGNfDsFY~qG- 97 (242)
T PF04481_consen 25 DAESVAAIVKAAEIGGATFVDIAAD------PELVKLAKSLSNLPICVSAVEPELFVAAVKAGADLIEIGNFDSFYAQG- 97 (242)
T ss_pred CHHHHHHHHHHHHccCCceEEecCC------HHHHHHHHHhCCCCeEeecCCHHHHHHHHHhCCCEEEecchHHHHhcC-
Confidence 6688999999999999999999963 3343333221 1 1111 11111111112222
Q ss_pred CcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCc
Q 025658 97 REIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGK 151 (249)
Q Consensus 97 ~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ 151 (249)
..++.+.+.+-.++.++.|= |..+---.....+++++.+-.++|++.|-
T Consensus 98 --r~f~a~eVL~Lt~~tR~LLP----~~~LsVTVPHiL~ld~Qv~LA~~L~~~Ga 146 (242)
T PF04481_consen 98 --RRFSAEEVLALTRETRSLLP----DITLSVTVPHILPLDQQVQLAEDLVKAGA 146 (242)
T ss_pred --CeecHHHHHHHHHHHHHhCC----CCceEEecCccccHHHHHHHHHHHHHhCC
Confidence 34667777777777777662 33333334445677778777777777664
No 166
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=38.51 E-value=2.8e+02 Score=24.43 Aligned_cols=41 Identities=7% Similarity=0.010 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCcccEEEcCcc-cHHHHHHHhhcCCeeEEee
Q 025658 139 TIGELKKLVEEGKIKYIGLSEA-SASTIRRAHAVHPITAVQL 179 (249)
Q Consensus 139 ~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 179 (249)
.++...++++.-.+--+++... +++..+++++.+..+.+.+
T Consensus 263 ~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 263 QVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred cHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHh
Confidence 3555666777666666666664 5777777777765555543
No 167
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=38.44 E-value=2.8e+02 Score=24.42 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHH---hcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHH
Q 025658 34 PKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKA---LKGGMRERVELATKFGISFADGKREIRGDPAYVRAAC 110 (249)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~---l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 110 (249)
..+.++...+++.+.+.|++=|=-+-.-. .-.+-+-.. +++..-.++-++|-.. ..+..
T Consensus 42 ~Ls~eei~~~~~~~~~~Gv~kvRlTGGEP--llR~dl~eIi~~l~~~~~~~islTTNG~----------------~L~~~ 103 (322)
T COG2896 42 LLSLEEIRRLVRAFAELGVEKVRLTGGEP--LLRKDLDEIIARLARLGIRDLSLTTNGV----------------LLARR 103 (322)
T ss_pred cCCHHHHHHHHHHHHHcCcceEEEeCCCc--hhhcCHHHHHHHHhhcccceEEEecchh----------------hHHHH
Confidence 34789999999999999998775432111 111112222 2222234566666554 33344
Q ss_pred HHHHHHcCCCccceEEeecCCC--------CCCHHHHHHHHHHHHHcCcc----cEEEcCcccHHHHHHHhhc
Q 025658 111 EASLKRLDIDCIDLYYQHRIDT--------RVPIEVTIGELKKLVEEGKI----KYIGLSEASASTIRRAHAV 171 (249)
Q Consensus 111 ~~sL~rLg~~~lDl~~lh~~~~--------~~~~~~~~~~l~~l~~~G~i----r~iGvs~~~~~~l~~~~~~ 171 (249)
...|+.-|++.+. +-||..|+ ...+.++++.+++..+.|.- ..+=+-+.+.+++..+++.
T Consensus 104 a~~Lk~AGl~rVN-VSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~ 175 (322)
T COG2896 104 AADLKEAGLDRVN-VSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEF 175 (322)
T ss_pred HHHHHHcCCcEEE-eecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHH
Confidence 5566666665543 23444433 23467788898888888863 3555555555555555443
No 168
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=38.42 E-value=1.8e+02 Score=26.36 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=28.6
Q ss_pred HHHHHHHhhc----CCeeEEeeccCccCcC--chhhHHHHHHHcCCeEEEcccC
Q 025658 162 ASTIRRAHAV----HPITAVQLEWSLWSRD--VEAEIVPTCRELGIGIVAYSPL 209 (249)
Q Consensus 162 ~~~l~~~~~~----~~~~~~q~~~n~~~~~--~~~~~~~~~~~~gi~v~a~spl 209 (249)
.+.+++++.. .-+.++|-+-.+.... +-..+.++|+++|+-+|.=-.-
T Consensus 174 i~al~~ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQ 227 (404)
T COG4992 174 IEALEAAIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQ 227 (404)
T ss_pred HHHHHHHhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccc
Confidence 4555555544 1234566666555443 3347888999999887754443
No 169
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=38.16 E-value=3.1e+02 Score=24.96 Aligned_cols=82 Identities=10% Similarity=0.062 Sum_probs=55.2
Q ss_pred cceEEeecCCCCCCHHHHHHHHHHHHHcC--cccEEEcCc--ccHHHHHHHhhcCCeeEEeeccCccCc-CchhhHHHHH
Q 025658 122 IDLYYQHRIDTRVPIEVTIGELKKLVEEG--KIKYIGLSE--ASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTC 196 (249)
Q Consensus 122 lDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvs~--~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~ 196 (249)
.++.++-.|-... .|+.+.+|.+.- .+.-+|=-. .++..+.++++....+++|+..|-+-- ....++.+.|
T Consensus 278 ~~i~~iEdPl~~~----D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~ik~~~iGGItea~~ia~lA 353 (425)
T TIGR01060 278 YPIVSIEDGLSEE----DWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIGTLTETLDAVELA 353 (425)
T ss_pred CCcEEEEcCCCcc----cHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHH
Confidence 3567777765433 466677776664 554444332 258899999888888999988876542 2234788999
Q ss_pred HHcCCeEE-Ecc
Q 025658 197 RELGIGIV-AYS 207 (249)
Q Consensus 197 ~~~gi~v~-a~s 207 (249)
+++|+.++ .+.
T Consensus 354 ~~~Gi~~vv~h~ 365 (425)
T TIGR01060 354 KKAGYTAVISHR 365 (425)
T ss_pred HHcCCcEEEecC
Confidence 99999855 444
No 170
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.01 E-value=2.6e+02 Score=24.05 Aligned_cols=94 Identities=11% Similarity=-0.028 Sum_probs=49.0
Q ss_pred CCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCC----------HHHHHHHHHHHHH
Q 025658 79 RERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVP----------IEVTIGELKKLVE 148 (249)
Q Consensus 79 r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~----------~~~~~~~l~~l~~ 148 (249)
.+++.|..|+....... ...+.+...+ +-+.|+..|+++ +-++......+ ....++.+..+++
T Consensus 206 g~d~~i~vris~~~~~~---~g~~~~e~~~-la~~l~~~G~d~---i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 278 (327)
T cd02803 206 GPDFPVGVRLSADDFVP---GGLTLEEAIE-IAKALEEAGVDA---LHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKK 278 (327)
T ss_pred CCCceEEEEechhccCC---CCCCHHHHHH-HHHHHHHcCCCE---EEeCCCCCcccccccCCCCCCcchhHHHHHHHHH
Confidence 35678888887532100 1133433332 334456667544 44444322111 1223455556666
Q ss_pred cCcccEEEcCccc-HHHHHHHhhcCCeeEEee
Q 025658 149 EGKIKYIGLSEAS-ASTIRRAHAVHPITAVQL 179 (249)
Q Consensus 149 ~G~ir~iGvs~~~-~~~l~~~~~~~~~~~~q~ 179 (249)
.=.+--++..+.. ++.++++++....+.+++
T Consensus 279 ~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 279 AVKIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred HCCCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 5556666666654 777777777656666665
No 171
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=37.55 E-value=91 Score=25.91 Aligned_cols=101 Identities=21% Similarity=0.141 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHc----CcccEEEcCcc--cHHHHHHHhhcCCe
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEE----GKIKYIGLSEA--SASTIRRAHAVHPI 174 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~----G~ir~iGvs~~--~~~~l~~~~~~~~~ 174 (249)
.+.+.+-.-+.+.-+.-. +| + +.+..|-+..+.+++.++|.+|++. |---.|=.-.| +.+.+..+......
T Consensus 86 ~d~~~~adYl~~l~~aA~-P~-~-L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~ 162 (248)
T PF07476_consen 86 NDPDRMADYLAELEEAAA-PF-K-LRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAA 162 (248)
T ss_dssp T-HHHHHHHHHHHHHHHT-TS---EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-S
T ss_pred CCHHHHHHHHHHHHHhcC-CC-e-eeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCc
Confidence 456666555554444433 21 2 5667776666677777777766643 33223333333 46788888888888
Q ss_pred eEEeeccCccCc-CchhhHHHHHHHcCCeEE
Q 025658 175 TAVQLEWSLWSR-DVEAEIVPTCRELGIGIV 204 (249)
Q Consensus 175 ~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~ 204 (249)
+.+|+.--=+-- ...-+.+-+|+++|++..
T Consensus 163 dmVQIKtPDLGgi~ntieAvlyCk~~gvgaY 193 (248)
T PF07476_consen 163 DMVQIKTPDLGGINNTIEAVLYCKEHGVGAY 193 (248)
T ss_dssp SEEEE-GGGGSSTHHHHHHHHHHHHTT-EEE
T ss_pred CEEEecCCCccchhhHHHHHHHHHhcCCcee
Confidence 999986432211 113378889999999865
No 172
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=37.48 E-value=1.1e+02 Score=27.65 Aligned_cols=77 Identities=17% Similarity=0.205 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHcC-cccEEEcCc---ccHHHHHHHhhcC-CeeEEe---eccCccCcCchhhHHHHHHHcCCeEEEcccC
Q 025658 138 VTIGELKKLVEEG-KIKYIGLSE---ASASTIRRAHAVH-PITAVQ---LEWSLWSRDVEAEIVPTCRELGIGIVAYSPL 209 (249)
Q Consensus 138 ~~~~~l~~l~~~G-~ir~iGvs~---~~~~~l~~~~~~~-~~~~~q---~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl 209 (249)
.+++.++.|.++| .|.++.|-. .+.++|++++... ....++ ++...+. +-.++-+.|+++|+.+..=..=
T Consensus 103 aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQ--pI~ei~~i~k~~~i~fHvDAvQ 180 (386)
T COG1104 103 AVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQ--PIAEIGEICKERGILFHVDAVQ 180 (386)
T ss_pred HHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecc--cHHHHHHHHHHcCCeEEEehhh
Confidence 4677777776667 677777774 5577777776532 222222 2222222 3458888888888777665555
Q ss_pred ccccCCC
Q 025658 210 GRGFFSS 216 (249)
Q Consensus 210 ~~G~l~~ 216 (249)
+-|.+.-
T Consensus 181 a~Gkipi 187 (386)
T COG1104 181 AVGKIPI 187 (386)
T ss_pred hcCceec
Confidence 5555543
No 173
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=37.17 E-value=1.8e+02 Score=24.15 Aligned_cols=146 Identities=13% Similarity=0.047 Sum_probs=85.9
Q ss_pred ecCCCCcccCcceecccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcC-----CCCCCeE
Q 025658 9 KLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG-----GMRERVE 83 (249)
Q Consensus 9 ~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~-----~~r~~~~ 83 (249)
+|| .|++++.|.+=-.. .++- .---..+.+.=+++.|.+.-- |. +|..+-++|++ ++=.+.+
T Consensus 20 rLG-GGiP~GsL~lIEGd----~~tG-KSvLsqr~~YG~L~~g~~v~y----vs---Te~T~refi~qm~sl~ydv~~~~ 86 (235)
T COG2874 20 RLG-GGIPVGSLILIEGD----NGTG-KSVLSQRFAYGFLMNGYRVTY----VS---TELTVREFIKQMESLSYDVSDFL 86 (235)
T ss_pred hcc-CCCccCeEEEEECC----CCcc-HHHHHHHHHHHHHhCCceEEE----EE---echhHHHHHHHHHhcCCCchHHH
Confidence 564 47888888652211 1111 113477788888899987653 32 77777788876 2333444
Q ss_pred EEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCC------CCHHHHHHHHHHHHHcCcccEEEc
Q 025658 84 LATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR------VPIEVTIGELKKLVEEGKIKYIGL 157 (249)
Q Consensus 84 i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~------~~~~~~~~~l~~l~~~G~ir~iGv 157 (249)
+.-++...+.+-+ ....+...-+.-++..++....-.-|++++...+.- ..+.+.+..+..|.++||+--+=+
T Consensus 87 l~G~l~~~~~~~~-~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTv 165 (235)
T COG2874 87 LSGRLLFFPVNLE-PVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTV 165 (235)
T ss_pred hcceeEEEEeccc-ccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4444433321000 123455555566666776666667899999887432 234556778888889999877776
Q ss_pred Cc--ccHHHHHHH
Q 025658 158 SE--ASASTIRRA 168 (249)
Q Consensus 158 s~--~~~~~l~~~ 168 (249)
.. ++.+.+-++
T Consensus 166 hp~~l~e~~~~ri 178 (235)
T COG2874 166 HPSALDEDVLTRI 178 (235)
T ss_pred ChhhcCHHHHHHH
Confidence 53 444444444
No 174
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=36.82 E-value=1.1e+02 Score=28.63 Aligned_cols=125 Identities=17% Similarity=0.078 Sum_probs=71.5
Q ss_pred HHHHHHhcCCCEE--eCcCCcC--------CChHHHHHHHHhcC---CCCCCeEEEeecCcccCC-C---------CCcC
Q 025658 43 LIHHAINSGITLL--DTSDIYG--------PHTNEILLGKALKG---GMRERVELATKFGISFAD-G---------KREI 99 (249)
Q Consensus 43 ~l~~A~~~Gi~~~--DtA~~Yg--------~g~se~~lg~~l~~---~~r~~~~i~tK~~~~~~~-~---------~~~~ 99 (249)
-+....+.|+..+ -||-+|- .|.-|.++.-+-+- -.+.++++++-++..... + ....
T Consensus 107 ~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~v 186 (546)
T PF01175_consen 107 HFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGLIV 186 (546)
T ss_dssp HHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEEEE
T ss_pred HHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEEEE
Confidence 4666677888865 3555542 24566655444322 456789999998854310 0 0001
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhc---CCeeE
Q 025658 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV---HPITA 176 (249)
Q Consensus 100 ~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~---~~~~~ 176 (249)
..+ -++.-+|+.+.|+|.+. .++++.++..++.+++|+..+||+-..-.+.++++.+. ..+..
T Consensus 187 Evd-------~~ri~kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~t 252 (546)
T PF01175_consen 187 EVD-------PSRIEKRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVT 252 (546)
T ss_dssp ES--------HHHHHHHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE-
T ss_pred EEC-------HHHHHHHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCccc
Confidence 122 24445788888988763 56899999999999999999999999888888888776 23344
Q ss_pred Eeecc
Q 025658 177 VQLEW 181 (249)
Q Consensus 177 ~q~~~ 181 (249)
-|...
T Consensus 253 DQTS~ 257 (546)
T PF01175_consen 253 DQTSA 257 (546)
T ss_dssp --SST
T ss_pred CCCcc
Confidence 46544
No 175
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=36.70 E-value=2.2e+02 Score=23.04 Aligned_cols=91 Identities=16% Similarity=0.129 Sum_probs=54.4
Q ss_pred HHcCCCccceEEee-cCCC-CCCHH----HHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhcCCeeEEeeccCccCcCc
Q 025658 115 KRLDIDCIDLYYQH-RIDT-RVPIE----VTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDV 188 (249)
Q Consensus 115 ~rLg~~~lDl~~lh-~~~~-~~~~~----~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~ 188 (249)
..-|.++||+=--- +|.. ..+.+ .....++.+++..-=--+.+-+++++.++.+++. ..+++-...+.-.
T Consensus 29 ~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~-g~~~ind~~~~~~--- 104 (210)
T PF00809_consen 29 VEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKA-GADIINDISGFED--- 104 (210)
T ss_dssp HHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH-TSSEEEETTTTSS---
T ss_pred HHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHc-CcceEEecccccc---
Confidence 34488999986433 2321 12223 3444555555411122566678889999999887 4444443333322
Q ss_pred hhhHHHHHHHcCCeEEEcccC
Q 025658 189 EAEIVPTCRELGIGIVAYSPL 209 (249)
Q Consensus 189 ~~~~~~~~~~~gi~v~a~spl 209 (249)
..++++.++++|..+++..--
T Consensus 105 ~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp STTHHHHHHHHTSEEEEESES
T ss_pred cchhhhhhhcCCCEEEEEecc
Confidence 359999999999999887655
No 176
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=36.52 E-value=2.9e+02 Score=24.14 Aligned_cols=133 Identities=15% Similarity=0.103 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCC----------cCCC--hHHHHHHHHhcCCCC-C-CeEEEeecCcccCCCCCcCCC
Q 025658 36 PESDMIALIHHAINSGITLLDTSDI----------YGPH--TNEILLGKALKGGMR-E-RVELATKFGISFADGKREIRG 101 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~----------Yg~g--~se~~lg~~l~~~~r-~-~~~i~tK~~~~~~~~~~~~~~ 101 (249)
+++...++-+.+.+.|+..||-=-. +|.. .+...+.+.++.... - ++-|+.|....+.+
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~------- 149 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDD------- 149 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCc-------
Confidence 5577888888899999999996221 2211 455666776665111 1 67888888755411
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCCCC--HHHHHHHHHHHHHcCc-ccEEEcCc-ccHHHHHHHhhcCCeeEE
Q 025658 102 DPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVP--IEVTIGELKKLVEEGK-IKYIGLSE-ASASTIRRAHAVHPITAV 177 (249)
Q Consensus 102 ~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~--~~~~~~~l~~l~~~G~-ir~iGvs~-~~~~~l~~~~~~~~~~~~ 177 (249)
.+.....+.+.++.-| +|.+.+|.-..... -...|+.+.++++.=. |--||=.+ ++.+...+.++....+-+
T Consensus 150 -~~~~~~~ia~~~~~~g---~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgV 225 (323)
T COG0042 150 -DDILALEIARILEDAG---ADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGV 225 (323)
T ss_pred -ccccHHHHHHHHHhcC---CCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEE
Confidence 1134445667777777 57899998643321 1247888888888877 66666665 788888888877555555
Q ss_pred ee
Q 025658 178 QL 179 (249)
Q Consensus 178 q~ 179 (249)
++
T Consensus 226 Mi 227 (323)
T COG0042 226 MI 227 (323)
T ss_pred EE
Confidence 54
No 177
>PRK12928 lipoyl synthase; Provisional
Probab=36.44 E-value=2.8e+02 Score=23.86 Aligned_cols=162 Identities=12% Similarity=0.158 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEeCcCCcC---CChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHH
Q 025658 34 PKPESDMIALIHHAINSGITLLDTSDIYG---PHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAAC 110 (249)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 110 (249)
..+.++..+.++.+.+.|++.+-...... ....-..+.+.++.+....-.+-.++. +++.+.. .
T Consensus 86 ~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~l------------tp~~~~~-~ 152 (290)
T PRK12928 86 PLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVL------------TPDFWGG-Q 152 (290)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEe------------ccccccC-C
Q ss_pred HHHHHHcCCCccceEEe---------ecCCCCCCHHHHHHHHHHHHHcC---ccc---EEEcCcccHHHHHHHhhc---C
Q 025658 111 EASLKRLDIDCIDLYYQ---------HRIDTRVPIEVTIGELKKLVEEG---KIK---YIGLSEASASTIRRAHAV---H 172 (249)
Q Consensus 111 ~~sL~rLg~~~lDl~~l---------h~~~~~~~~~~~~~~l~~l~~~G---~ir---~iGvs~~~~~~l~~~~~~---~ 172 (249)
++.|++|.-...+++.. .........++.++.++.+++.| .++ -+|+ .-+.+++.+.+.. .
T Consensus 153 ~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel 231 (290)
T PRK12928 153 RERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAV 231 (290)
T ss_pred HHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhc
Q ss_pred CeeEEee-ccCc-----------cCcCchhhHHHHHHHcCCeEEEcccC
Q 025658 173 PITAVQL-EWSL-----------WSRDVEAEIVPTCRELGIGIVAYSPL 209 (249)
Q Consensus 173 ~~~~~q~-~~n~-----------~~~~~~~~~~~~~~~~gi~v~a~spl 209 (249)
+++.+.+ +|.. ..+.....+-+.+.+.|...++.+||
T Consensus 232 ~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~ 280 (290)
T PRK12928 232 GCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPL 280 (290)
T ss_pred CCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCc
No 178
>PRK07328 histidinol-phosphatase; Provisional
Probab=36.31 E-value=2.6e+02 Score=23.48 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCCCEEeCcCCc
Q 025658 40 MIALIHHAINSGITLLDTSDIY 61 (249)
Q Consensus 40 ~~~~l~~A~~~Gi~~~DtA~~Y 61 (249)
..+.+++|.+.|+..+=.++|.
T Consensus 20 ~ee~v~~A~~~Gl~~i~~TdH~ 41 (269)
T PRK07328 20 PEEYVQAARRAGLKEIGFTDHL 41 (269)
T ss_pred HHHHHHHHHHCCCCEEEEecCC
Confidence 6678999999999998777664
No 179
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=36.02 E-value=2.6e+02 Score=23.45 Aligned_cols=106 Identities=13% Similarity=0.024 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhc--CCeeEEe
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV--HPITAVQ 178 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q 178 (249)
.+.+.+.+.+++-++ -|.++||+=. .|......++.-+.+..+.+.-. .-|.+-+++++.++++++. +.. +-
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~--iI 96 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKC--VV 96 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCc--EE
Confidence 456666666666654 4999999854 23322222222233222322212 2377778999999999886 432 33
Q ss_pred eccCccCc-CchhhHHHHHHHcCCeEEEcccCccc
Q 025658 179 LEWSLWSR-DVEAEIVPTCRELGIGIVAYSPLGRG 212 (249)
Q Consensus 179 ~~~n~~~~-~~~~~~~~~~~~~gi~v~a~spl~~G 212 (249)
+..+.... .....+++.+++.|..++....-..|
T Consensus 97 NsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 97 NSINLEDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred EeCCCCCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 33343321 11237788999999998887643333
No 180
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.95 E-value=3.1e+02 Score=24.27 Aligned_cols=106 Identities=12% Similarity=0.158 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHcCC-CccceEEeecCCCC-----------CCHHHHHHHHHH-HHHcCc---ccEEEcC--cccHHHHHH
Q 025658 106 VRAACEASLKRLDI-DCIDLYYQHRIDTR-----------VPIEVTIGELKK-LVEEGK---IKYIGLS--EASASTIRR 167 (249)
Q Consensus 106 i~~~~~~sL~rLg~-~~lDl~~lh~~~~~-----------~~~~~~~~~l~~-l~~~G~---ir~iGvs--~~~~~~l~~ 167 (249)
+++-.+.-+++|+. +....+-||.+++. .++++.++++.+ +.+.|+ ++++=+. |-+.+++++
T Consensus 196 i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~ 275 (345)
T PRK14457 196 IPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEE 275 (345)
T ss_pred HHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHH
Confidence 44434444455432 34577889998653 246777777766 445552 3555554 455566555
Q ss_pred Hh---hcCCeeEEeeccCccCcC----chh----hHHHHHHHcCCeEEEcccCcc
Q 025658 168 AH---AVHPITAVQLEWSLWSRD----VEA----EIVPTCRELGIGIVAYSPLGR 211 (249)
Q Consensus 168 ~~---~~~~~~~~q~~~n~~~~~----~~~----~~~~~~~~~gi~v~a~spl~~ 211 (249)
+. +..+..++-++||..... +.. ...+.++++|+.+......+.
T Consensus 276 La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 276 LANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 44 434557777888876431 222 355667778999988777643
No 181
>PRK05588 histidinol-phosphatase; Provisional
Probab=35.67 E-value=2.6e+02 Score=23.24 Aligned_cols=103 Identities=12% Similarity=0.182 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCCCEEeCcCCcCCC---------hHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHH
Q 025658 39 DMIALIHHAINSGITLLDTSDIYGPH---------TNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAA 109 (249)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g---------~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~ 109 (249)
...+.+++|.+.|+..+ .++|.... .-+..+ +.++..+..+|.+..-+... ++ ....
T Consensus 17 ~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~~~~I~~GiE~~~~-----------~~-~~~~ 82 (255)
T PRK05588 17 KIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYRNNKLLLGIELGME-----------KD-LIEE 82 (255)
T ss_pred CHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHhcCCcceEEEeccc-----------CC-CHHH
Confidence 46788999999999999 77764210 011111 11222222345444444322 11 2445
Q ss_pred HHHHHHHcCCCccceEEeecCCCCC----------CHHH----HHHHHHHHHH-cCcccEEE
Q 025658 110 CEASLKRLDIDCIDLYYQHRIDTRV----------PIEV----TIGELKKLVE-EGKIKYIG 156 (249)
Q Consensus 110 ~~~sL~rLg~~~lDl~~lh~~~~~~----------~~~~----~~~~l~~l~~-~G~ir~iG 156 (249)
+++.|++...|++ +.-+|+.+... +.++ .++.+.++.+ .+++.-+|
T Consensus 83 ~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlg 143 (255)
T PRK05588 83 NKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLG 143 (255)
T ss_pred HHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 5777777777765 67789854211 2233 3466666666 46555444
No 182
>PRK00208 thiG thiazole synthase; Reviewed
Probab=35.31 E-value=2.8e+02 Score=23.46 Aligned_cols=105 Identities=12% Similarity=0.011 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCC-CHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhcCCeeEEe
Q 025658 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRV-PIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQ 178 (249)
Q Consensus 100 ~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q 178 (249)
..+.+.-.+-.+-.++-++++.|=|=.+..+.... +..+++++.++|.++|.+-. =+++-++....++.+.+ ++.+.
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vl-pyc~~d~~~ak~l~~~G-~~~vm 149 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPVLAKRLEEAG-CAAVM 149 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHcC-CCEeC
Confidence 56778777888888899999888877777765543 67889999999999998643 35555666655555543 33332
Q ss_pred eccCccCc--C-chhhHHHHHHH-cCCeEEEc
Q 025658 179 LEWSLWSR--D-VEAEIVPTCRE-LGIGIVAY 206 (249)
Q Consensus 179 ~~~n~~~~--~-~~~~~~~~~~~-~gi~v~a~ 206 (249)
.--+++-. . ...+.++...+ .++.|++-
T Consensus 150 Plg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 150 PLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred CCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 21122211 1 12355666666 47777754
No 183
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=35.24 E-value=1.7e+02 Score=25.35 Aligned_cols=133 Identities=13% Similarity=0.110 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEeC----------cCCcCCC--hHHHHHHHHhcCCC-CCCeEEEeecCcccCCCCCcCCCC
Q 025658 36 PESDMIALIHHAINSGITLLDT----------SDIYGPH--TNEILLGKALKGGM-RERVELATKFGISFADGKREIRGD 102 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dt----------A~~Yg~g--~se~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~ 102 (249)
+++...++.+.+.+.|+..||- ...+|.+ .+...+.+.++... .-++-|+.|+.... +.+
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~-------~~~ 136 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGW-------DDS 136 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESEC-------T--
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccccc-------ccc
Confidence 5677888888888889999996 2234432 34455566665511 12356677766443 122
Q ss_pred HHHHHHHHHHHHHHcCCCccceEEeecCCCCCCH--HHHHHHHHHHHHcCcccEEEcCc-ccHHHHHHHhhcCCeeEEee
Q 025658 103 PAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPI--EVTIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQL 179 (249)
Q Consensus 103 ~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~ 179 (249)
.+.+.+ +-+.++..| +|.+.+|.-...+.. ...|+.+.++++.=.|--||=.+ ++.+++.+.++....+-+++
T Consensus 137 ~~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 137 PEETIE-FARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp CHHHHH-HHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEE
T ss_pred hhHHHH-HHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEE
Confidence 333333 455667777 788999986544322 56799999999888877776665 66788888777644555544
No 184
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=34.81 E-value=1.3e+02 Score=28.57 Aligned_cols=55 Identities=20% Similarity=0.152 Sum_probs=39.4
Q ss_pred ChHHHHHHHHhcC-CCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHc-CCCccceEEeecCCCC
Q 025658 64 HTNEILLGKALKG-GMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRL-DIDCIDLYYQHRIDTR 133 (249)
Q Consensus 64 g~se~~lg~~l~~-~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rL-g~~~lDl~~lh~~~~~ 133 (249)
|.+-+-++++|.. .+|+++.|+--.. .++ +-+-.||+|| |+.|+.=+.+-|..+.
T Consensus 632 gGsGkEF~~aLGGN~pREQFTvVmLTY------------ERe---~VLm~sLeRL~gLPYLnKvvVVWNspk 688 (907)
T KOG2264|consen 632 GGSGKEFSKALGGNRPREQFTVVMLTY------------ERE---AVLMGSLERLHGLPYLNKVVVVWNSPK 688 (907)
T ss_pred CCchHHHHHHhcCCCccceEEEEEEEe------------hHH---HHHHHHHHHhhCCcccceEEEEeCCCC
Confidence 4566777888877 7888887765433 222 3367899999 8899998888885443
No 185
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.71 E-value=1.3e+02 Score=24.48 Aligned_cols=59 Identities=10% Similarity=0.201 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCcccEEEcCc-ccHHHHHHHhhcCCeeEEeeccCccCcCchhhHHHHHHHcCCeEE
Q 025658 139 TIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIV 204 (249)
Q Consensus 139 ~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~ 204 (249)
..+.+++++++..=-.||..+ .+.++++++++.+. |+-.++ ....+++++|+++||.++
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA----~FivSP---~~~~~vi~~a~~~~i~~i 101 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS----RFIVSP---GTTQELLAAANDSDVPLL 101 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC----CEEECC---CCCHHHHHHHHHcCCCEe
Confidence 445555555543334577765 67788888877532 122222 224588888888888765
No 186
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=34.53 E-value=2.8e+02 Score=23.34 Aligned_cols=115 Identities=13% Similarity=0.019 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCC-CCCcCCCCHHHHHHHHHHH---HHHc
Q 025658 42 ALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFAD-GKREIRGDPAYVRAACEAS---LKRL 117 (249)
Q Consensus 42 ~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~-~~~~~~~~~~~i~~~~~~s---L~rL 117 (249)
+++++|++.|...|..-..-. ..+++ -..+++ ..-.+++...-+..... .........+.+.+.+++. +++.
T Consensus 87 ~v~e~al~~G~~iINdisg~~--~~~~~-~~l~~~-~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 162 (257)
T cd00739 87 EVARAALEAGADIINDVSGGS--DDPAM-LEVAAE-YGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESA 162 (257)
T ss_pred HHHHHHHHhCCCEEEeCCCCC--CChHH-HHHHHH-cCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHc
Confidence 356667777777776433221 11333 344443 23345554332211000 0000011123444445544 4455
Q ss_pred CCC----ccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCccc
Q 025658 118 DID----CIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEAS 161 (249)
Q Consensus 118 g~~----~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 161 (249)
|++ ++|-..- .......--++++.+.++++.|.=-.+|+||-+
T Consensus 163 Gi~~~~Ii~DPg~g-f~ks~~~~~~~l~~i~~l~~~~~pil~G~SrkS 209 (257)
T cd00739 163 GVARNRIILDPGIG-FGKTPEHNLELLRRLDELKQLGLPVLVGASRKS 209 (257)
T ss_pred CCCHHHEEEecCCC-cccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 766 4444221 111111223467788888888877799999854
No 187
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=34.43 E-value=2.9e+02 Score=23.40 Aligned_cols=157 Identities=13% Similarity=0.113 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhcCCCEEeCcCCcCCChHHHH--HHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHH
Q 025658 38 SDMIALIHHAINSGITLLDTSDIYGPHTNEIL--LGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLK 115 (249)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~--lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 115 (249)
+...+.++..-+.|+.+|..+..=+.+..+.. ++..|++ .-.+-.+--+.. .+.+...+...+... .
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~--~~g~~~i~Hlt~--------r~~n~~~l~~~L~~~-~ 83 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKK--ETGIPTVPHLTC--------IGATREEIREILREY-R 83 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHH--hcCCCeeEEeee--------cCCCHHHHHHHHHHH-H
Confidence 44556666666789999999876553333332 3334442 111211111111 124566777776644 7
Q ss_pred HcCCCccceEEee-cCC------CCCCHHHHHHHHHHHHHcCcccEEEcCccc--------H-HHHHHHhhc----CCee
Q 025658 116 RLDIDCIDLYYQH-RID------TRVPIEVTIGELKKLVEEGKIKYIGLSEAS--------A-STIRRAHAV----HPIT 175 (249)
Q Consensus 116 rLg~~~lDl~~lh-~~~------~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~--------~-~~l~~~~~~----~~~~ 175 (249)
.+|++ +++.|- .+. ....+....+-++.+++..---.||+..+. . +++..+.+. ..+-
T Consensus 84 ~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~ 161 (272)
T TIGR00676 84 ELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYA 161 (272)
T ss_pred HCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 77854 233342 221 112233455555555554223477766532 1 234433332 3455
Q ss_pred EEeeccCccCcCchhhHHHHHHHcCCeEEEcccCccccC
Q 025658 176 AVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFF 214 (249)
Q Consensus 176 ~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~l 214 (249)
+-|.-|+.-. -...++.|++.|+.+ |+--|++
T Consensus 162 iTQ~~fd~~~---~~~~~~~~~~~gi~~----PIi~Gi~ 193 (272)
T TIGR00676 162 ITQLFFDNDD---YYRFVDRCRAAGIDV----PIIPGIM 193 (272)
T ss_pred eeccccCHHH---HHHHHHHHHHcCCCC----CEecccC
Confidence 6666555422 347888999998764 4444444
No 188
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=34.38 E-value=2.4e+02 Score=22.54 Aligned_cols=149 Identities=12% Similarity=0.054 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHH
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLK 115 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 115 (249)
+.+++.++++.+++.|+...|.-..+= -..-+.+|+.. ..+++++.-=. ...+.+++.+.....
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i~~~~l-~p~m~~vG~~w---~~~~i~va~e~------------~as~~~~~~l~~l~~ 72 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDIIEEGL-APGMDIVGDKY---EEGEIFVPELL------------MAADAMKAGLDLLKP 72 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHH---ccCCeeHHHHH------------HHHHHHHHHHHHHHH
Confidence 667899999999999977555321110 01222233333 23344333211 223445555555444
Q ss_pred HcCCCc---cceEEeecCCCCCCHHHHHHHHHHHHHcCcc-cEEEcCcccHHHHHHHhhcCCeeEEeeccCccCcC-chh
Q 025658 116 RLDIDC---IDLYYQHRIDTRVPIEVTIGELKKLVEEGKI-KYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRD-VEA 190 (249)
Q Consensus 116 rLg~~~---lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~ 190 (249)
.+.... ---+++..+..+.+--...=.-.-|+..|.= .++| .+.+.+.+.+.+....++++-+.+.....- .-.
T Consensus 73 ~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~ 151 (201)
T cd02070 73 LLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMK 151 (201)
T ss_pred HHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccccccHHHHH
Confidence 443221 1234555554333322222223356667764 5567 567788888888777888888877554432 234
Q ss_pred hHHHHHHHcCC
Q 025658 191 EIVPTCRELGI 201 (249)
Q Consensus 191 ~~~~~~~~~gi 201 (249)
++++.+++.+.
T Consensus 152 ~~i~~lr~~~~ 162 (201)
T cd02070 152 EVIEALKEAGL 162 (201)
T ss_pred HHHHHHHHCCC
Confidence 78888888753
No 189
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=34.34 E-value=3.9e+02 Score=24.87 Aligned_cols=101 Identities=10% Similarity=0.052 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcC-cccEEEcCc----c--cHHHHHHHhhcCC
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEG-KIKYIGLSE----A--SASTIRRAHAVHP 173 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~----~--~~~~l~~~~~~~~ 173 (249)
.+++.+.+.++...++.|+.. +.+...+...+.+...+.++++.++| .--.|+++. . +.+.+. ++....
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~---~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~-~l~~aG 297 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGF---FILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILH-LYRRAG 297 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCE---EEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHH-HHHHhC
Confidence 477888899998888888654 33443333344455667777888877 333454432 2 333333 333323
Q ss_pred eeEEeeccCccCc--------C----chhhHHHHHHHcCCeEEE
Q 025658 174 ITAVQLEWSLWSR--------D----VEAEIVPTCRELGIGIVA 205 (249)
Q Consensus 174 ~~~~q~~~n~~~~--------~----~~~~~~~~~~~~gi~v~a 205 (249)
+.-+++-.--.++ . ...+.++.|+++||.+.+
T Consensus 298 ~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~ 341 (497)
T TIGR02026 298 LVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEA 341 (497)
T ss_pred CcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 3333332211111 1 112678888899887644
No 190
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=34.13 E-value=2.2e+02 Score=22.00 Aligned_cols=95 Identities=17% Similarity=0.084 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCC-CeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHH
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRE-RVELATKFGISFADGKREIRGDPAYVRAACEASL 114 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~-~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL 114 (249)
+.+...++++.+++.|++-+-+.. ..+..+.+. ..+ ++-+..+++.... ....+...+.++..
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~-~~~~~~~v~~~v~~~~~------~~~~~~~~~~a~~a- 74 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADA-LAGSDVPVIVVVGFPTG------LTTTEVKVAEVEEA- 74 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHH-hCCCCCeEEEEecCCCC------CCcHHHHHHHHHHH-
Confidence 667899999999999999887653 333333332 223 6777777774321 01234444444444
Q ss_pred HHcCCCccceEEeecCC---CCCCHHHHHHHHHHHHHc
Q 025658 115 KRLDIDCIDLYYQHRID---TRVPIEVTIGELKKLVEE 149 (249)
Q Consensus 115 ~rLg~~~lDl~~lh~~~---~~~~~~~~~~~l~~l~~~ 149 (249)
.++|.+ .+.++-|- ...+.++..+.++++.+.
T Consensus 75 ~~~Gad---~i~v~~~~~~~~~~~~~~~~~~~~~i~~~ 109 (201)
T cd00945 75 IDLGAD---EIDVVINIGSLKEGDWEEVLEEIAAVVEA 109 (201)
T ss_pred HHcCCC---EEEEeccHHHHhCCCHHHHHHHHHHHHHH
Confidence 445754 44444331 111245566666666654
No 191
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=34.12 E-value=1.6e+02 Score=24.69 Aligned_cols=54 Identities=17% Similarity=0.077 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCC-CHHHHHHHHHHHHHcCccc
Q 025658 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRV-PIEVTIGELKKLVEEGKIK 153 (249)
Q Consensus 100 ~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir 153 (249)
..+.+.-.+-.+-+++-++++.|-+=.+-.++... +..+++++.+.|+++|-+-
T Consensus 79 c~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~V 133 (262)
T COG2022 79 CRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVV 133 (262)
T ss_pred cCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEE
Confidence 56777777788889999999988888877766554 4678999999999999764
No 192
>PRK09389 (R)-citramalate synthase; Provisional
Probab=33.83 E-value=3.2e+02 Score=25.53 Aligned_cols=25 Identities=4% Similarity=0.232 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHhcCCCEEeCcC
Q 025658 35 KPESDMIALIHHAINSGITLLDTSD 59 (249)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA~ 59 (249)
.+.++..++++...+.||..|+...
T Consensus 21 ~s~e~K~~ia~~L~~~Gv~~IE~G~ 45 (488)
T PRK09389 21 LTPEEKLEIARKLDELGVDVIEAGS 45 (488)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3567888999999999999999864
No 193
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=33.67 E-value=2.2e+02 Score=26.50 Aligned_cols=99 Identities=8% Similarity=0.067 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCC------CHHHHHHHHHHHHHc-CcccE---------EEcCcccHHH
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRV------PIEVTIGELKKLVEE-GKIKY---------IGLSEASAST 164 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~------~~~~~~~~l~~l~~~-G~ir~---------iGvs~~~~~~ 164 (249)
.+.+...+ +-+.|.++|++.|.+. ..... --++.|+.++++++. ..++. +|..++..+.
T Consensus 22 ~~t~dkl~-Ia~~Ld~~Gv~~IE~~----ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDv 96 (467)
T PRK14041 22 MRTEDMLP-ALEAFDRMGFYSMEVW----GGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDV 96 (467)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEec----CCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchh
Confidence 44444443 5556788898888883 21110 012357777777765 22333 2333333333
Q ss_pred HHHHhh---cCCeeEEeeccCccCcCchhhHHHHHHHcCCeEE
Q 025658 165 IRRAHA---VHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIV 204 (249)
Q Consensus 165 l~~~~~---~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~ 204 (249)
++.+++ ...++.+.+-..+.+...-...+++++++|..+.
T Consensus 97 v~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~ 139 (467)
T PRK14041 97 VELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQ 139 (467)
T ss_pred hHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEE
Confidence 333222 1345666655555444434477888888887766
No 194
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=32.94 E-value=1.3e+02 Score=27.49 Aligned_cols=16 Identities=0% Similarity=-0.016 Sum_probs=11.1
Q ss_pred CeEEEcccCccccCCC
Q 025658 201 IGIVAYSPLGRGFFSS 216 (249)
Q Consensus 201 i~v~a~spl~~G~l~~ 216 (249)
..+++.+|=+.|.+.+
T Consensus 317 ~~~iglG~gA~s~~~~ 332 (453)
T PRK09249 317 CDLIGLGVSAISRIGD 332 (453)
T ss_pred CeEEEECcCcccCCCC
Confidence 5677777777777654
No 195
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=32.90 E-value=2e+02 Score=26.53 Aligned_cols=67 Identities=16% Similarity=0.143 Sum_probs=45.4
Q ss_pred HHHHHHHHcCcccEEEcCcccHHHHHHHhhc-------CC-eeEEeeccCccCcCchhhHHHHHHHcCCeEEEccc
Q 025658 141 GELKKLVEEGKIKYIGLSEASASTIRRAHAV-------HP-ITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSP 208 (249)
Q Consensus 141 ~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-------~~-~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~sp 208 (249)
+-...+-+.|-...+|....+++++++.+.. .+ |-++-+ .+.-+...+..+++.|.+++|.++..+-
T Consensus 34 eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~e~~~v~l~l~~~V~~veasa 108 (444)
T TIGR02814 34 ELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPALEWGLVDLLLRHGVRIVEASA 108 (444)
T ss_pred HHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCcccHHHHHHHHHHcCCCEEEecc
Confidence 3445666899999999999999998877543 13 444432 2221222344789999999999886653
No 196
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=32.64 E-value=2.9e+02 Score=22.95 Aligned_cols=73 Identities=16% Similarity=0.247 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcCCCEEeCcCCcCCC----hHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHH
Q 025658 35 KPESDMIALIHHAINSGITLLDTSDIYGPH----TNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAAC 110 (249)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g----~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 110 (249)
.++++...+.+.++++|..|+=|+-.+..| ..-+++.+.+ ..+++.....+ =.+.+.....+
T Consensus 137 Lt~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~edv~lM~~~v----------g~~vgvKaSGG----Irt~eda~~~i 202 (228)
T COG0274 137 LTDEEKRKACEIAIEAGADFVKTSTGFSAGGATVEDVKLMKETV----------GGRVGVKASGG----IRTAEDAKAMI 202 (228)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh----------ccCceeeccCC----cCCHHHHHHHH
Q ss_pred HHHHHHcCCCc
Q 025658 111 EASLKRLDIDC 121 (249)
Q Consensus 111 ~~sL~rLg~~~ 121 (249)
+.-..|+|++.
T Consensus 203 ~aga~RiGtSs 213 (228)
T COG0274 203 EAGATRIGTSS 213 (228)
T ss_pred HHhHHHhcccc
No 197
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=32.42 E-value=1.6e+02 Score=20.04 Aligned_cols=63 Identities=11% Similarity=-0.005 Sum_probs=35.9
Q ss_pred HHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcC-cccEEEcCcc-cHHHHHHHhhcCCeeEE
Q 025658 112 ASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEG-KIKYIGLSEA-SASTIRRAHAVHPITAV 177 (249)
Q Consensus 112 ~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~-~~~~l~~~~~~~~~~~~ 177 (249)
+.++.+.....|++++...-+.....+.++.+ ++.+ .++-|.+++. +.+...++++.+-..++
T Consensus 34 ~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i---~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l 98 (112)
T PF00072_consen 34 EALELLKKHPPDLIIIDLELPDGDGLELLEQI---RQINPSIPIIVVTDEDDSDEVQEALRAGADDYL 98 (112)
T ss_dssp HHHHHHHHSTESEEEEESSSSSSBHHHHHHHH---HHHTTTSEEEEEESSTSHHHHHHHHHTTESEEE
T ss_pred HHHHHhcccCceEEEEEeeecccccccccccc---ccccccccEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 33344444459999998765555444455444 4444 6777777753 44566666655433333
No 198
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=32.03 E-value=1.2e+02 Score=23.85 Aligned_cols=64 Identities=22% Similarity=0.165 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCCc----cceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhc
Q 025658 106 VRAACEASLKRLDIDC----IDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV 171 (249)
Q Consensus 106 i~~~~~~sL~rLg~~~----lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 171 (249)
.++.++..++++|.+. .+.+.-.+ .......++.+.|+.|+++| ++-.-+||.+.+.+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAY-LRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 3556667777777651 11111111 11233456778899999887 55666888777766665544
No 199
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=31.96 E-value=3.7e+02 Score=23.95 Aligned_cols=141 Identities=13% Similarity=0.110 Sum_probs=66.9
Q ss_pred CCCHHHHHHHH-------HHHHhcCCCEEeCcCC-------------------cCCChHH---HHHH---HHhcCCCCCC
Q 025658 34 PKPESDMIALI-------HHAINSGITLLDTSDI-------------------YGPHTNE---ILLG---KALKGGMRER 81 (249)
Q Consensus 34 ~~~~~~~~~~l-------~~A~~~Gi~~~DtA~~-------------------Yg~g~se---~~lg---~~l~~~~r~~ 81 (249)
..+.+++.+++ +.|.++|+..|+.-.. || |.-| +++- +++++.-.++
T Consensus 133 ~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYG-GslenR~Rf~~eii~air~~vG~d 211 (361)
T cd04747 133 EMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYG-GSLAARSRFAAEVVKAIRAAVGPD 211 (361)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHcCCC
Confidence 34555554444 4667789999986433 23 2112 2222 2333323456
Q ss_pred eEEEeecCcccCCCC-CcCCCCHHHHHHHHHHHHHHcCCCccceEEee--cCCCCCCHHHHHHHHHHHHHcCcccEEEcC
Q 025658 82 VELATKFGISFADGK-REIRGDPAYVRAACEASLKRLDIDCIDLYYQH--RIDTRVPIEVTIGELKKLVEEGKIKYIGLS 158 (249)
Q Consensus 82 ~~i~tK~~~~~~~~~-~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh--~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs 158 (249)
+.|..|+........ .....+.+...+ +-+.|+..|+|++++-.-. .|.... ..+.....+++.-.+.-+++.
T Consensus 212 ~~v~vRis~~~~~~~~~~~g~~~~e~~~-~~~~l~~~gvd~i~vs~g~~~~~~~~~---~~~~~~~~~k~~~~~pv~~~G 287 (361)
T cd04747 212 FPIILRFSQWKQQDYTARLADTPDELEA-LLAPLVDAGVDIFHCSTRRFWEPEFEG---SELNLAGWTKKLTGLPTITVG 287 (361)
T ss_pred CeEEEEECcccccccccCCCCCHHHHHH-HHHHHHHcCCCEEEecCCCccCCCcCc---cchhHHHHHHHHcCCCEEEEC
Confidence 778888874321110 001134444433 3334667787665542211 111110 012222334444344444444
Q ss_pred c-------------------ccHHHHHHHhhcCCeeEEee
Q 025658 159 E-------------------ASASTIRRAHAVHPITAVQL 179 (249)
Q Consensus 159 ~-------------------~~~~~l~~~~~~~~~~~~q~ 179 (249)
. .+++..+++++...++.+-+
T Consensus 288 ~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~ 327 (361)
T cd04747 288 SVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAV 327 (361)
T ss_pred CcccccccccccccccccccCCHHHHHHHHHCCCCCeehh
Confidence 4 37777888877766665543
No 200
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=31.93 E-value=3.5e+02 Score=23.68 Aligned_cols=133 Identities=10% Similarity=0.139 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEe----------CcCCcCCC--hHHHHHHHHhcCCCC-CCeEEEeecCcccCCCCCcCCCC
Q 025658 36 PESDMIALIHHAINSGITLLD----------TSDIYGPH--TNEILLGKALKGGMR-ERVELATKFGISFADGKREIRGD 102 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~D----------tA~~Yg~g--~se~~lg~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~ 102 (249)
++++..++.+.+.+.|+..|| +...||.. ...+.+.+.++.... -.+-|+.|....... ..+
T Consensus 75 ~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~-----~~t 149 (333)
T PRK11815 75 DPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDD-----QDS 149 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCC-----CcC
Confidence 557778888888899999998 34455532 233445555554211 135677776432211 112
Q ss_pred HHHHHHHHHHHHHHcCCCccceEEeecCCC-CCCHH---------HHHHHHHHHHHcC-cccEEEcCc-ccHHHHHHHhh
Q 025658 103 PAYVRAACEASLKRLDIDCIDLYYQHRIDT-RVPIE---------VTIGELKKLVEEG-KIKYIGLSE-ASASTIRRAHA 170 (249)
Q Consensus 103 ~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~-~~~~~---------~~~~~l~~l~~~G-~ir~iGvs~-~~~~~l~~~~~ 170 (249)
.+.. ..+-+.++..| +|.+.+|.-+. ..... -.|+...++++.- .|--||... .+++++.++++
T Consensus 150 ~~~~-~~~~~~l~~aG---~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~ 225 (333)
T PRK11815 150 YEFL-CDFVDTVAEAG---CDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ 225 (333)
T ss_pred HHHH-HHHHHHHHHhC---CCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh
Confidence 2221 23344456666 57788885432 00000 1377777887763 677777665 56777777766
Q ss_pred cCCeeEEee
Q 025658 171 VHPITAVQL 179 (249)
Q Consensus 171 ~~~~~~~q~ 179 (249)
. .+.+++
T Consensus 226 ~--aDgVmI 232 (333)
T PRK11815 226 H--VDGVMI 232 (333)
T ss_pred c--CCEEEE
Confidence 3 455554
No 201
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=31.88 E-value=3.1e+02 Score=24.03 Aligned_cols=140 Identities=13% Similarity=0.099 Sum_probs=70.9
Q ss_pred CHHHHHHHH-------HHHHhcCCCEEeCcCCcCC------------------ChHH---HHHHHHhc---CCCCCCeEE
Q 025658 36 PESDMIALI-------HHAINSGITLLDTSDIYGP------------------HTNE---ILLGKALK---GGMRERVEL 84 (249)
Q Consensus 36 ~~~~~~~~l-------~~A~~~Gi~~~DtA~~Yg~------------------g~se---~~lg~~l~---~~~r~~~~i 84 (249)
+.+++.+++ +.|.++|+.-++--...|. |.-| +++-+.++ +.-.+++.|
T Consensus 140 t~~eI~~ii~~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v 219 (341)
T PF00724_consen 140 TEEEIEEIIEDFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPV 219 (341)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceE
Confidence 555555444 4567889999886333331 2222 22222222 222356778
Q ss_pred EeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCCCccceEE---eecCC--CCC--C--HHHHHHHHHHHHHcCcccEE
Q 025658 85 ATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYY---QHRID--TRV--P--IEVTIGELKKLVEEGKIKYI 155 (249)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~---lh~~~--~~~--~--~~~~~~~l~~l~~~G~ir~i 155 (249)
..|+....... ...+.+.. ..+-+.++.++++.+++.. +|+.. ... . ..-.......+++.-++--+
T Consensus 220 ~~Rls~~~~~~---~g~~~~e~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi 295 (341)
T PF00724_consen 220 GVRLSPDDFVE---GGITLEET-IEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVI 295 (341)
T ss_dssp EEEEETTCSST---TSHHSHHH-HHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEE
T ss_pred EEEEeeecccC---CCCchHHH-HHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEE
Confidence 88988653111 11122222 2345667788877776442 34321 111 1 11112333455554556678
Q ss_pred EcCcccHHH-HHHHhhcCCeeEEee
Q 025658 156 GLSEASAST-IRRAHAVHPITAVQL 179 (249)
Q Consensus 156 Gvs~~~~~~-l~~~~~~~~~~~~q~ 179 (249)
++..++..+ .+++++....+.+-+
T Consensus 296 ~~G~i~~~~~ae~~l~~g~~DlV~~ 320 (341)
T PF00724_consen 296 GVGGIRTPEQAEKALEEGKADLVAM 320 (341)
T ss_dssp EESSTTHHHHHHHHHHTTSTSEEEE
T ss_pred EEeeecchhhhHHHHhcCCceEeec
Confidence 888776555 777777776666644
No 202
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=31.41 E-value=3.6e+02 Score=23.68 Aligned_cols=101 Identities=16% Similarity=0.153 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcC--CCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCC
Q 025658 42 ALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG--GMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDI 119 (249)
Q Consensus 42 ~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~--~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~ 119 (249)
++.+.|.++|+..||--...| -++.++|.. ..|.+=+ +.. .......+.+-++...+..|.
T Consensus 145 ~AA~ra~~aGfDgVeih~ahG-----yLl~qFlsp~~N~RtD~y-----GGs-------lenR~r~~~eiv~~ir~~vg~ 207 (343)
T cd04734 145 DAARRCQAGGLDGVELQAAHG-----HLIDQFLSPLTNRRTDEY-----GGS-------LENRMRFLLEVLAAVRAAVGP 207 (343)
T ss_pred HHHHHHHHcCCCEEEEccccc-----hHHHHhhCCCcCCCCCcC-----CCC-------HHHHhHHHHHHHHHHHHHcCC
Confidence 334466788999998755444 466777764 2232111 100 112335566666666677764
Q ss_pred CccceEEeecCCC---CCCHHHHHHHHHHHHHcCcccEEEcCc
Q 025658 120 DCIDLYYQHRIDT---RVPIEVTIGELKKLVEEGKIKYIGLSE 159 (249)
Q Consensus 120 ~~lDl~~lh~~~~---~~~~~~~~~~l~~l~~~G~ir~iGvs~ 159 (249)
+..=-+=|-+.+. ..+.++..+.+..|.+.|.+.+|=||.
T Consensus 208 ~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~ 250 (343)
T cd04734 208 DFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSA 250 (343)
T ss_pred CCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 4321122222221 134566777777777777777776653
No 203
>PLN02775 Probable dihydrodipicolinate reductase
Probab=31.38 E-value=3.4e+02 Score=23.44 Aligned_cols=58 Identities=10% Similarity=0.069 Sum_probs=43.0
Q ss_pred HHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhc
Q 025658 110 CEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV 171 (249)
Q Consensus 110 ~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 171 (249)
+++.|..+..++.|++++....+ +.+.+.++.+.+.|+---+|.+.|+.+++.++.+.
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT~P----~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~ 125 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYTLP----DAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEE 125 (286)
T ss_pred HHHHHHHhhccCCCEEEEECCCh----HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhc
Confidence 45566555556789888877544 44777888888888888899999998888776554
No 204
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.37 E-value=3.7e+02 Score=24.09 Aligned_cols=77 Identities=13% Similarity=0.183 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHH-HHcC---cccEEEcC--cccHHHHHHH---hhcCCeeEEeeccCccCcC----c----hhhHHHHHH
Q 025658 135 PIEVTIGELKKL-VEEG---KIKYIGLS--EASASTIRRA---HAVHPITAVQLEWSLWSRD----V----EAEIVPTCR 197 (249)
Q Consensus 135 ~~~~~~~~l~~l-~~~G---~ir~iGvs--~~~~~~l~~~---~~~~~~~~~q~~~n~~~~~----~----~~~~~~~~~ 197 (249)
+++++++++.+. .+.| +|+++=+. |.+.+++.++ ++..++.++-++||.+... + -....+.++
T Consensus 260 ~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L~ 339 (368)
T PRK14456 260 PLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDRLL 339 (368)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHHH
Confidence 678888888754 4445 23344443 4555455444 4444567778888876542 1 125667788
Q ss_pred HcCCeEEEcccCcc
Q 025658 198 ELGIGIVAYSPLGR 211 (249)
Q Consensus 198 ~~gi~v~a~spl~~ 211 (249)
++|+.+......+.
T Consensus 340 ~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 340 DAGLQVTVRKSYGT 353 (368)
T ss_pred HCCCcEEeeCCCCc
Confidence 89999999888754
No 205
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=31.32 E-value=2.3e+02 Score=26.89 Aligned_cols=78 Identities=17% Similarity=0.130 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhcCCeeEEeeccCccCcCchhhHHHHHHHcCCeEEEcccCc
Q 025658 133 RVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLG 210 (249)
Q Consensus 133 ~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~ 210 (249)
..+..++.+.+.+.++..+|+.||+-.+...++..+++...+.++-++=+.......-.-++..-..|.-+..-.|+.
T Consensus 409 ~id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~~k~~e~~~~~g~i~~~dnp~m 486 (546)
T COG4626 409 LIDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGAIKTIERKLAEGVLVHGDNPLM 486 (546)
T ss_pred ccCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCchhHHHHHHHhcCcEEECCCcHH
Confidence 345678899999999999999999999999999988887555544332222222212245555556666666666663
No 206
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=31.31 E-value=2.6e+02 Score=25.65 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEe-ecCC----------CCC-CHHH---HH-HHHHHHHHcCcccEEEcCcccHH
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQ-HRID----------TRV-PIEV---TI-GELKKLVEEGKIKYIGLSEASAS 163 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~l-h~~~----------~~~-~~~~---~~-~~l~~l~~~G~ir~iGvs~~~~~ 163 (249)
.+.+.+.+.++..++ |+.+++.++.+ +.|. ... +.++ .+ .+.+.|.+.|. ..+++++|...
T Consensus 215 qt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~~ 291 (455)
T TIGR00538 215 QTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAKP 291 (455)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeCC
Confidence 577888888876555 89999988877 2221 001 1122 22 34455556675 67999998854
No 207
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=31.22 E-value=3.9e+02 Score=23.97 Aligned_cols=148 Identities=13% Similarity=0.007 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHH
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLK 115 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 115 (249)
+.++..+.++.+++.|++.|=.--.-.+-......=+++++.-.+++-|..=.. ..++.+.. -+.++
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~di~~v~avRe~~G~~~~l~vDaN---------~~w~~~~A----~~~~~ 226 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRIEAALDVLGDGARLAVDAN---------GRFDLETA----IAYAK 226 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCCeEEEECC---------CCCCHHHH----HHHHH
Confidence 445566777778889999875421110001112223444441122333322211 12344332 22334
Q ss_pred HcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCccc-EEEcCcccHHHHHHHhhcCCe----eEEeeccCccCc-Cch
Q 025658 116 RLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK-YIGLSEASASTIRRAHAVHPI----TAVQLEWSLWSR-DVE 189 (249)
Q Consensus 116 rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~----~~~q~~~n~~~~-~~~ 189 (249)
.|. .+++.++-.|-+.. .++.+.+|.++..+- +.|=|.++...+.++++.... +++|+..+-.-- ...
T Consensus 227 ~l~--~~~~~~iEeP~~~~----d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~ 300 (385)
T cd03326 227 ALA--PYGLRWYEEPGDPL----DYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEY 300 (385)
T ss_pred Hhh--CcCCCEEECCCCcc----CHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHH
Confidence 442 24666777765433 466777888776664 667777889999998887655 899987765431 124
Q ss_pred hhHHHHHHHcCCe
Q 025658 190 AEIVPTCRELGIG 202 (249)
Q Consensus 190 ~~~~~~~~~~gi~ 202 (249)
..+.+.|+.+|+.
T Consensus 301 ~kia~lA~a~gi~ 313 (385)
T cd03326 301 LRMLDVLEAHGWS 313 (385)
T ss_pred HHHHHHHHHcCCC
Confidence 4889999999997
No 208
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=31.21 E-value=2.8e+02 Score=22.92 Aligned_cols=19 Identities=26% Similarity=0.573 Sum_probs=16.5
Q ss_pred hhHHHHHHHcCCeEEEccc
Q 025658 190 AEIVPTCRELGIGIVAYSP 208 (249)
Q Consensus 190 ~~~~~~~~~~gi~v~a~sp 208 (249)
..+++.++++|+.|++|..
T Consensus 221 ~~~i~~~~~~G~~v~vwtv 239 (263)
T cd08567 221 KELVDEAHALGLKVVPWTV 239 (263)
T ss_pred HHHHHHHHHCCCEEEEecC
Confidence 4789999999999999974
No 209
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=31.20 E-value=1.9e+02 Score=26.11 Aligned_cols=68 Identities=15% Similarity=0.074 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCcc---cEEEcCcccHHHHHHHhhcCCeeEEeeccCccCc-CchhhHHHHHHHcCCeEEEc
Q 025658 139 TIGELKKLVEEGKI---KYIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAY 206 (249)
Q Consensus 139 ~~~~l~~l~~~G~i---r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~ 206 (249)
.++.+.+|++.-.+ -.-|=+.++...+.++++...++++|....-+-- .....+.+.|+.+|+.+..+
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 57788888877542 2347778888999999988889999988776532 12348899999999998876
No 210
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=31.17 E-value=3.2e+02 Score=22.98 Aligned_cols=100 Identities=19% Similarity=0.135 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEe-ecCCCC-CCHH-H---HHHHHHHHHHcCcccEEEcCcccHHHHHHHhhcCCe
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQ-HRIDTR-VPIE-V---TIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPI 174 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~l-h~~~~~-~~~~-~---~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 174 (249)
.+++.+.+.+++-+ +-|.++||+=-. -+|+.. .+.+ | ....++.+++.-.+ -+.+-+++++.++++++.+..
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~-plsiDT~~~~vi~~al~~G~~ 97 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV-PISVDTYRAEVARAALEAGAD 97 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCCHHHHHHHHHcCCC
Confidence 35555555544443 458899999321 123322 1222 2 44555566555222 378889999999999987543
Q ss_pred eEEeeccCccCcCchhhHHHHHHHcCCeEEEcc
Q 025658 175 TAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYS 207 (249)
Q Consensus 175 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~s 207 (249)
-++-+ +... ..++++.+++.|..++...
T Consensus 98 iINsi--s~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 98 IINDV--SGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred EEEEC--CCCC---CchhHHHHHHcCCcEEEEe
Confidence 33332 3332 3489999999999999854
No 211
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=31.09 E-value=5.3e+02 Score=25.50 Aligned_cols=150 Identities=15% Similarity=0.080 Sum_probs=79.8
Q ss_pred HHHHHHHhcCCCEEeCcCC-------------------cCCChHH---H---HHHHHhcCCCCCCeEEEeecCcccCCCC
Q 025658 42 ALIHHAINSGITLLDTSDI-------------------YGPHTNE---I---LLGKALKGGMRERVELATKFGISFADGK 96 (249)
Q Consensus 42 ~~l~~A~~~Gi~~~DtA~~-------------------Yg~g~se---~---~lg~~l~~~~r~~~~i~tK~~~~~~~~~ 96 (249)
++.+.|.++|+..||.-.. || |.-| + .+-+++++.-.+++-|..|+......
T Consensus 555 ~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yG-GslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~-- 631 (765)
T PRK08255 555 AAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYG-GSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWV-- 631 (765)
T ss_pred HHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCC-CCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEcccccc--
Confidence 3445677889999987322 33 2212 2 22333444334578899999853210
Q ss_pred CcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCC----CHHH--HHHHHHHHHHcCcccEEEcCcc-cHHHHHHHh
Q 025658 97 REIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRV----PIEV--TIGELKKLVEEGKIKYIGLSEA-SASTIRRAH 169 (249)
Q Consensus 97 ~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~----~~~~--~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~ 169 (249)
....+.+... .+-+.|+..|+|+| -+|...... .... ......++++.-.+--+++.+. +++..++++
T Consensus 632 -~~g~~~~~~~-~~~~~l~~~g~d~i---~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l 706 (765)
T PRK08255 632 -EGGNTPDDAV-EIARAFKAAGADLI---DVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSII 706 (765)
T ss_pred -CCCCCHHHHH-HHHHHHHhcCCcEE---EeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHH
Confidence 0123444443 34455677786554 455321110 0000 1223345666555666777764 778899998
Q ss_pred hcCCeeEEeeccC-ccCcCchhhHHHHHHHcCCe
Q 025658 170 AVHPITAVQLEWS-LWSRDVEAEIVPTCRELGIG 202 (249)
Q Consensus 170 ~~~~~~~~q~~~n-~~~~~~~~~~~~~~~~~gi~ 202 (249)
+....+.+.+-=. +.++ .=+...+++.++.
T Consensus 707 ~~g~~D~v~~gR~~l~dP---~~~~~~~~~~~~~ 737 (765)
T PRK08255 707 AAGRADLCALARPHLADP---AWTLHEAAEIGYR 737 (765)
T ss_pred HcCCcceeeEcHHHHhCc---cHHHHHHHHcCCC
Confidence 8877777765322 2222 1355667777776
No 212
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=30.99 E-value=3.6e+02 Score=23.91 Aligned_cols=113 Identities=13% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCEEeCcCCcCC---------ChHHHHHHHHhcCCCCCCeE-EEeecCcccCCCCCcCCCCHHHHHHHH
Q 025658 41 IALIHHAINSGITLLDTSDIYGP---------HTNEILLGKALKGGMRERVE-LATKFGISFADGKREIRGDPAYVRAAC 110 (249)
Q Consensus 41 ~~~l~~A~~~Gi~~~DtA~~Yg~---------g~se~~lg~~l~~~~r~~~~-i~tK~~~~~~~~~~~~~~~~~~i~~~~ 110 (249)
.+.++...++|+|.+...-.-++ +.+.+.+-++++......+- |..=+-... +..+.+.+++.+
T Consensus 108 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~Gl------Pgqt~~~~~~tl 181 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGT------PGESDDDWRASL 181 (375)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccC------CCCCHHHHHHHH
Q ss_pred HHHHHHcCCCccceEEee-----------------cCCCCCCHHHHHHHHHHHHHcCcccEEEcCccc
Q 025658 111 EASLKRLDIDCIDLYYQH-----------------RIDTRVPIEVTIGELKKLVEEGKIKYIGLSEAS 161 (249)
Q Consensus 111 ~~sL~rLg~~~lDl~~lh-----------------~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 161 (249)
+..++ ++.+++.++.+. .|+.....+-...+.+.|.+.|. ..+++|||.
T Consensus 182 ~~~~~-l~~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~-~~ye~s~fa 247 (375)
T PRK05628 182 DAALE-AGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGF-DWYEVSNWA 247 (375)
T ss_pred HHHHh-cCCCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCC-Ceeeecccc
No 213
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=30.88 E-value=1.8e+02 Score=23.63 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=48.6
Q ss_pred HHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCc-ccHHHHHHHhhcCC-eeEEeeccCccCcC
Q 025658 110 CEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHP-ITAVQLEWSLWSRD 187 (249)
Q Consensus 110 ~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~-~~~~q~~~n~~~~~ 187 (249)
+-+.|-+-|++.+.+=+ +. ....+.+++++++..=-.||..+ .+.++++++++.+. |- .++ .
T Consensus 25 ~~~al~~~Gi~~iEit~-~t-------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi-----vsP---~ 88 (204)
T TIGR01182 25 LAKALIEGGLRVLEVTL-RT-------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI-----VSP---G 88 (204)
T ss_pred HHHHHHHcCCCEEEEeC-CC-------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE-----ECC---C
Confidence 44556666765544433 11 23555666666554335688776 67888888877642 22 222 2
Q ss_pred chhhHHHHHHHcCCeEEE
Q 025658 188 VEAEIVPTCRELGIGIVA 205 (249)
Q Consensus 188 ~~~~~~~~~~~~gi~v~a 205 (249)
...+++++|+++||.++.
T Consensus 89 ~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 89 LTPELAKHAQDHGIPIIP 106 (204)
T ss_pred CCHHHHHHHHHcCCcEEC
Confidence 245999999999998664
No 214
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=30.66 E-value=1.1e+02 Score=26.86 Aligned_cols=27 Identities=19% Similarity=0.441 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCcccEEEcC
Q 025658 131 DTRVPIEVTIGELKKLVEEGKIKYIGLS 158 (249)
Q Consensus 131 ~~~~~~~~~~~~l~~l~~~G~ir~iGvs 158 (249)
+...++.+.+..|+.+++.| +|++|+.
T Consensus 102 ega~~~~~dl~~L~~~~~~G-vR~lglt 128 (313)
T COG2355 102 EGAEPLGDDLDKLELFHALG-VRSLGLT 128 (313)
T ss_pred cCcccccccHHHHHHHHHhC-ceEEEee
Confidence 44566777888999999999 8888875
No 215
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=30.56 E-value=3.7e+02 Score=23.49 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=34.3
Q ss_pred eEEeeccCccCc--CchhhHHHHHHHcCCeEEEcccCccccCCCCCCC
Q 025658 175 TAVQLEWSLWSR--DVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKL 220 (249)
Q Consensus 175 ~~~q~~~n~~~~--~~~~~~~~~~~~~gi~v~a~spl~~G~l~~~~~~ 220 (249)
+.+|++.+...- ......++.++..|..|+.|.|..+|-++.....
T Consensus 237 ~~~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~~~~~~~~~d~ 284 (309)
T cd08613 237 TTLLIPLNYAPWLWGWPNRFLARMEAAGTRVILVGPYTGGEFSEGFDT 284 (309)
T ss_pred CeEecCccccceEEeCCHHHHHHHHHcCCeEEEEecccCCcccCCCCC
Confidence 567887765432 2245899999999999999999877777665443
No 216
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.56 E-value=2.1e+02 Score=20.69 Aligned_cols=79 Identities=18% Similarity=0.134 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCC----------CcCCCCHHH
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGK----------REIRGDPAY 105 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~----------~~~~~~~~~ 105 (249)
|.....++.--.+++|.-|+-|-..|.-|. |-++---|-+ ..+++.+++|+.+-.+-+. .........
T Consensus 18 D~a~LYsaYMpfl~nGglFVpTnk~y~iG~-evfl~l~lld-~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~~ 95 (117)
T COG3215 18 DMALLYSAYMPFLENGGLFVPTNKVYSIGE-EVFLLLELLD-FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGLK 95 (117)
T ss_pred hHHHHHHHHhHHHhcCcEEcccCCccccch-hhhhhhhhcC-chhhccccceEEEEccCCCCCCCCceeeeccCCCchhh
Confidence 334445555556799999999999997543 3333323322 3468999999876542221 111223456
Q ss_pred HHHHHHHHHHH
Q 025658 106 VRAACEASLKR 116 (249)
Q Consensus 106 i~~~~~~sL~r 116 (249)
+++++|..|..
T Consensus 96 vr~~IE~~Lg~ 106 (117)
T COG3215 96 VRNQIETLLGG 106 (117)
T ss_pred HHHHHHHHHHh
Confidence 88888887743
No 217
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=30.54 E-value=2.7e+02 Score=23.93 Aligned_cols=105 Identities=14% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHc---CCCccceE------EeecCCCCCCHHHHHHHHHHHHHcCcccE----EEcCcccHHHHHH
Q 025658 101 GDPAYVRAACEASLKRL---DIDCIDLY------YQHRIDTRVPIEVTIGELKKLVEEGKIKY----IGLSEASASTIRR 167 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rL---g~~~lDl~------~lh~~~~~~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~ 167 (249)
.+++.++......++.+ |+.|+|+. .-+..+....++...+++.+.+++-.|+. .+..+.+.+.+++
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~~ 145 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQE 145 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHHH
Q ss_pred Hhh---------cCCeeEEeeccCccCcCchhhHHHHHHHcCCeEEEc
Q 025658 168 AHA---------VHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 206 (249)
Q Consensus 168 ~~~---------~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 206 (249)
.++ ...+++.-.+... ....-..+++.|+++|+.+..+
T Consensus 146 ~~~~~~~~~~~~vvg~~l~~~~~~~-~~~~~~~~~~~A~~~g~~v~~H 192 (325)
T cd01320 146 TLELALKYRDKGVVGFDLAGDEVGF-PPEKFVRAFQRAREAGLRLTAH 192 (325)
T ss_pred HHHHHHhccCCCEEEeecCCCCCCC-CHHHHHHHHHHHHHCCCceEEe
No 218
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=30.50 E-value=2.8e+02 Score=22.77 Aligned_cols=129 Identities=21% Similarity=0.123 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHH-----HHHHHHH
Q 025658 39 DMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYV-----RAACEAS 113 (249)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i-----~~~~~~s 113 (249)
+.++.++.|++.|++-+=+.+.|. ....+.+.. .+.++-++.++.... ...+.- ..++++.
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p~~~-----~~~~~~~~~-~~~~~~~vi~fp~g~--------~~~~~k~~~~~~~~ve~A 85 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTPGYV-----KPAAELLAG-SGVKVGLVIGFPFGT--------STTEPKGYDQIVAEVEEA 85 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGGGH-----HHHHHHSTT-STSEEEEEESTTTSS--------STHHHHTCEEEHHHHHHH
T ss_pred hHHHHHHHHHHhCCCEEEECHHHH-----HHHHHHhhc-cccccceEEEeCCCC--------CccccccccchHHHHHHH
Confidence 799999999999999998888885 223344433 223566665554321 222222 4556666
Q ss_pred HHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHH---cCcccEEEcCcccHH---------HHHHHhh---cCCeeEEe
Q 025658 114 LKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVE---EGKIKYIGLSEASAS---------TIRRAHA---VHPITAVQ 178 (249)
Q Consensus 114 L~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~---~G~ir~iGvs~~~~~---------~l~~~~~---~~~~~~~q 178 (249)
.++|.+-+|+++-..+..........+.+.++++ +--+..|--+....+ .+..+.+ ....+++-
T Consensus 86 -~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vK 164 (236)
T PF01791_consen 86 -IRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVK 164 (236)
T ss_dssp -HHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEE
T ss_pred -HHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEE
Confidence 5789999999998854333333334444443333 333333333322222 2344332 25567777
Q ss_pred eccC
Q 025658 179 LEWS 182 (249)
Q Consensus 179 ~~~n 182 (249)
..+.
T Consensus 165 t~tg 168 (236)
T PF01791_consen 165 TSTG 168 (236)
T ss_dssp EE-S
T ss_pred ecCC
Confidence 7666
No 219
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=30.41 E-value=2e+02 Score=24.35 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=44.2
Q ss_pred HHHHHHHHHHcCC--------------------------CccceEEeecCCCCCCH---HHHHHHHHHHHHcCcccEEEc
Q 025658 107 RAACEASLKRLDI--------------------------DCIDLYYQHRIDTRVPI---EVTIGELKKLVEEGKIKYIGL 157 (249)
Q Consensus 107 ~~~~~~sL~rLg~--------------------------~~lDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~ir~iGv 157 (249)
++.++++|++.|. ...|+++|..|....+. .+.++-|.+|+++|+ .|=+
T Consensus 117 ~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~--tIl~ 194 (254)
T COG1121 117 KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK--TVLM 194 (254)
T ss_pred HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC--EEEE
Confidence 5677788877764 35789999998766553 467899999999976 5666
Q ss_pred CcccHHHHHHH
Q 025658 158 SEASASTIRRA 168 (249)
Q Consensus 158 s~~~~~~l~~~ 168 (249)
.+++...+.+.
T Consensus 195 vtHDL~~v~~~ 205 (254)
T COG1121 195 VTHDLGLVMAY 205 (254)
T ss_pred EeCCcHHhHhh
Confidence 67777766654
No 220
>PRK12677 xylose isomerase; Provisional
Probab=30.30 E-value=3.2e+02 Score=24.55 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=28.4
Q ss_pred CcceecccccCC----CCCCC-CCHHHHHHHHHHHHhcCCCEEeCc
Q 025658 18 SAQGLGCMGMSA----FYGPP-KPESDMIALIHHAINSGITLLDTS 58 (249)
Q Consensus 18 s~lglG~~~~g~----~~~~~-~~~~~~~~~l~~A~~~Gi~~~DtA 58 (249)
.+.+||.|.+|. .||.+ .+.-...+.++.+-+.|+..|..-
T Consensus 6 ~~f~~~~w~~~~~~~~~~g~~~~~~~~~~E~v~~~a~~Gf~gVElh 51 (384)
T PRK12677 6 DKFSFGLWTVGWQGRDPFGDATRPPLDPVEAVHKLAELGAYGVTFH 51 (384)
T ss_pred ceeEEEEeeccCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCEEEec
Confidence 367899998872 24443 222247788999999999988764
No 221
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=29.88 E-value=3.4e+02 Score=22.89 Aligned_cols=105 Identities=14% Similarity=0.010 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCC-CHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhcCCeeEEe
Q 025658 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRV-PIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQ 178 (249)
Q Consensus 100 ~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q 178 (249)
..+.+.-.+-.+-..+-++++.|=|=.+..+.... +..+++++.++|.++|.+-. =+++-++....++.+.+ ++.++
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vl-pyc~dd~~~ar~l~~~G-~~~vm 149 (248)
T cd04728 72 CRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVL-PYCTDDPVLAKRLEDAG-CAAVM 149 (248)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHcC-CCEeC
Confidence 56777777788888899999888887777766543 67889999999999998643 35555666655555543 33342
Q ss_pred eccCccCc--C-chhhHHHHHHH-cCCeEEEc
Q 025658 179 LEWSLWSR--D-VEAEIVPTCRE-LGIGIVAY 206 (249)
Q Consensus 179 ~~~n~~~~--~-~~~~~~~~~~~-~gi~v~a~ 206 (249)
.--+++-. . ...++++...+ .++.|++-
T Consensus 150 Plg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e 181 (248)
T cd04728 150 PLGSPIGSGQGLLNPYNLRIIIERADVPVIVD 181 (248)
T ss_pred CCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe
Confidence 21122211 1 12356666665 47777754
No 222
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=29.86 E-value=3.1e+02 Score=22.39 Aligned_cols=23 Identities=9% Similarity=0.306 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCc
Q 025658 36 PESDMIALIHHAINSGITLLDTS 58 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA 58 (249)
.+|....+++.|++.|+..|++-
T Consensus 13 ~pENTl~Af~~A~~~G~d~iE~D 35 (237)
T cd08583 13 TYTNSLDAFEHNYKKGYRVFEVD 35 (237)
T ss_pred CCccHHHHHHHHHHhCCCEEEEE
Confidence 34778999999999999998874
No 223
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=29.64 E-value=4.3e+02 Score=23.99 Aligned_cols=152 Identities=11% Similarity=0.052 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHH
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLK 115 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 115 (249)
+.++..+..+.+++.|++.|=.--.-.. ......=+++|+.-.+++.|..=.. ..++.+... +.++
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~-~~d~~~v~avRe~vG~~~~L~vDaN---------~~w~~~~A~----~~~~ 261 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKVGADL-EDDIRRCRLAREVIGPDNKLMIDAN---------QRWDVPEAI----EWVK 261 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCH-HHHHHHHHHHHHhcCCCCeEEEECC---------CCCCHHHHH----HHHH
Confidence 3355666667777888887653211110 1111222344442223333332221 123444332 2333
Q ss_pred HcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcC----cccEEEcCcccHHHHHHHhhcCCeeEEeeccCccCc-Cchh
Q 025658 116 RLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEG----KIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEA 190 (249)
Q Consensus 116 rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G----~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~ 190 (249)
+|. -+++.++-.|-... .++.+.+|++.. .=-+.|=|.++...+.++++...++++|......-- ....
T Consensus 262 ~L~--~~~l~~iEEP~~~~----d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit~~~ 335 (415)
T cd03324 262 QLA--EFKPWWIEEPTSPD----DILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNENL 335 (415)
T ss_pred Hhh--ccCCCEEECCCCCC----cHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHH
Confidence 332 23556666664433 456666676654 223555566888899999888888999988766432 1244
Q ss_pred hHHHHHHHcCCeEEEcc
Q 025658 191 EIVPTCRELGIGIVAYS 207 (249)
Q Consensus 191 ~~~~~~~~~gi~v~a~s 207 (249)
.+.+.|+++|+.+..++
T Consensus 336 kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 336 AVLLMAAKFGVPVCPHA 352 (415)
T ss_pred HHHHHHHHcCCeEEEcC
Confidence 88999999999998874
No 224
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=29.40 E-value=2.4e+02 Score=21.06 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=41.4
Q ss_pred CCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCC----CccceEEeecCCCC-CCHHHHHHHHHHHHH
Q 025658 78 MRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDI----DCIDLYYQHRIDTR-VPIEVTIGELKKLVE 148 (249)
Q Consensus 78 ~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~----~~lDl~~lh~~~~~-~~~~~~~~~l~~l~~ 148 (249)
+|=-+.|+-|++ .......+++-+.++++.+.. +..|++++..+... .+..+..+.|..+.+
T Consensus 47 ~RvG~~VSKKvG---------~AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNG---------NAVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccC---------cchHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 344466777765 235778888888888876642 55899999998643 355566666655543
No 225
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=29.35 E-value=1.8e+02 Score=20.99 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=32.0
Q ss_pred cCcccHHHHHHHhhcCCeeEEeeccCccCcCchhhHHHHHHHcCCeEEEccc
Q 025658 157 LSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSP 208 (249)
Q Consensus 157 vs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~sp 208 (249)
.+..+.++++.+.... ++++-+-..--.+.+..++.+.++++||++-.+..
T Consensus 37 ~~~l~~e~l~~l~~~~-peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T 87 (109)
T cd05560 37 FEDLTAAHFEALLALQ-PEVILLGTGERQRFPPPALLAPLLARGIGVEVMDT 87 (109)
T ss_pred cccCCHHHHHHHHhcC-CCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECH
Confidence 4455677777766543 45554444333333456888999999999876653
No 226
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=29.30 E-value=3.8e+02 Score=23.29 Aligned_cols=90 Identities=16% Similarity=0.063 Sum_probs=50.3
Q ss_pred eEEeecCCCCC-CHHHHHHHHHHHHHcCcccEEEcCc---------ccHHHHHHHhhcCCeeEEeeccCccCc--Cchhh
Q 025658 124 LYYQHRIDTRV-PIEVTIGELKKLVEEGKIKYIGLSE---------ASASTIRRAHAVHPITAVQLEWSLWSR--DVEAE 191 (249)
Q Consensus 124 l~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvs~---------~~~~~l~~~~~~~~~~~~q~~~n~~~~--~~~~~ 191 (249)
-+.+-.=|+.. +-....+.++.+++.+.++.+.+.+ .+.+.++.+.+.+....+.++.|-..- .....
T Consensus 139 ~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~~~~ 218 (321)
T TIGR03822 139 EVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHARELTAEARA 218 (321)
T ss_pred EEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHHHHH
Confidence 34454444433 2355677788888888776444432 344445545444422233334432110 11226
Q ss_pred HHHHHHHcCCeEEEcccCcccc
Q 025658 192 IVPTCRELGIGIVAYSPLGRGF 213 (249)
Q Consensus 192 ~~~~~~~~gi~v~a~spl~~G~ 213 (249)
.++.+++.||.+..-+++..|.
T Consensus 219 ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 219 ACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred HHHHHHHcCCEEEEEeeEeCCC
Confidence 7778888999998888887764
No 227
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=28.90 E-value=3.6e+02 Score=22.78 Aligned_cols=30 Identities=17% Similarity=0.055 Sum_probs=21.7
Q ss_pred HHHHHHHcCcccEEEcCcccHHHHHHHhhc
Q 025658 142 ELKKLVEEGKIKYIGLSEASASTIRRAHAV 171 (249)
Q Consensus 142 ~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 171 (249)
.++.+++.|.-+.+=++.|+++.+..+...
T Consensus 155 v~~~i~~~~~~~~vi~sSF~~~~l~~~~~~ 184 (286)
T cd08606 155 VLEKVFDYGAGRNIIFSSFTPDICILLSLK 184 (286)
T ss_pred HHHHHHhcCCCCceEEEcCCHHHHHHHHhh
Confidence 344555667778899999999988776543
No 228
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.60 E-value=4.2e+02 Score=23.49 Aligned_cols=94 Identities=12% Similarity=0.103 Sum_probs=59.6
Q ss_pred EEeecCCCC-----------CCHHHHHHHHHHHHHcC--cc--cEEEcC--cccHHHHHHHhh---cCCeeEEeeccCcc
Q 025658 125 YYQHRIDTR-----------VPIEVTIGELKKLVEEG--KI--KYIGLS--EASASTIRRAHA---VHPITAVQLEWSLW 184 (249)
Q Consensus 125 ~~lh~~~~~-----------~~~~~~~~~l~~l~~~G--~i--r~iGvs--~~~~~~l~~~~~---~~~~~~~q~~~n~~ 184 (249)
+-||.+++. .++++.++++.+..+.+ .| +++=+. |-+.+++.++.+ ..+..++-++||..
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~ 290 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEH 290 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCC
Confidence 558887542 24577888887776654 22 344444 455566665544 34567778888876
Q ss_pred CcC----chh----hHHHHHHHcCCeEEEcccC------ccccCCCCC
Q 025658 185 SRD----VEA----EIVPTCRELGIGIVAYSPL------GRGFFSSGP 218 (249)
Q Consensus 185 ~~~----~~~----~~~~~~~~~gi~v~a~spl------~~G~l~~~~ 218 (249)
... +.. ...+.++++||.+....+. |+|.|..+.
T Consensus 291 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di~aaCGqL~~~~ 338 (349)
T PRK14463 291 EGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGSDISAACGQLKGKL 338 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcchhhccCcccccc
Confidence 421 222 4566778899999999887 457776643
No 229
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=28.47 E-value=3.7e+02 Score=22.82 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcC
Q 025658 36 PESDMIALIHHAINSGITLLDTSD 59 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~ 59 (249)
+.++-.++++...+.||+.|+...
T Consensus 18 s~e~K~~i~~~L~~~Gv~~IEvGs 41 (274)
T cd07938 18 PTEDKIELIDALSAAGLRRIEVTS 41 (274)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC
Confidence 557788899999999999999973
No 230
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=28.24 E-value=84 Score=26.41 Aligned_cols=98 Identities=14% Similarity=0.083 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHH-HcCcccEEEcCc-------ccHHHHHHHhhcCCeeEEe
Q 025658 107 RAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLV-EEGKIKYIGLSE-------ASASTIRRAHAVHPITAVQ 178 (249)
Q Consensus 107 ~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~-~~G~ir~iGvs~-------~~~~~l~~~~~~~~~~~~q 178 (249)
.+.++..|+-.| +|||.+-+-|-.....-.+.++..-++. +.|.--+.|=.- -..+++.+..+...|+.+.
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IE 102 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIE 102 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEE
Confidence 345777888888 8999999998654433333333333333 333333333221 1122333333445677777
Q ss_pred eccCccCcCc--hhhHHHHHHHcCCeEEE
Q 025658 179 LEWSLWSRDV--EAEIVPTCRELGIGIVA 205 (249)
Q Consensus 179 ~~~n~~~~~~--~~~~~~~~~~~gi~v~a 205 (249)
+.-....-.. ...+++.++++|..|++
T Consensus 103 iSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 103 ISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp E--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred ecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 6655444331 22677777777766553
No 231
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=28.12 E-value=1.3e+02 Score=22.28 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=33.9
Q ss_pred ccHHHHHHHhhcC-CeeEEeeccCccCcCchhhHHHHHHHcCCeEEEccc
Q 025658 160 ASASTIRRAHAVH-PITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSP 208 (249)
Q Consensus 160 ~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~sp 208 (249)
.+++.+++..+.. .+.++-+--..-.+.+...+.+.|++.||++-.++.
T Consensus 55 Lt~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve~Mst 104 (127)
T COG3737 55 LTPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVEPMST 104 (127)
T ss_pred CCHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCccccccc
Confidence 3466666666653 356666666665555667999999999999766554
No 232
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=27.89 E-value=3.7e+02 Score=22.69 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=69.3
Q ss_pred cCCCEEeCcCCcCCChHHHHHHHHhcC---CCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCCCccceEE
Q 025658 50 SGITLLDTSDIYGPHTNEILLGKALKG---GMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYY 126 (249)
Q Consensus 50 ~Gi~~~DtA~~Yg~g~se~~lg~~l~~---~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~ 126 (249)
.|+..||-.-... --..-.+++++ .+..=+||.||-. -.+.+.+.-+|-|..|+.-=+
T Consensus 36 ngihIIDL~kT~~---~l~~A~~~v~~~~~~~g~ILfVgTK~~----------------a~~~V~~~A~r~g~~yV~~Rw 96 (252)
T COG0052 36 NGIHIIDLQKTLE---RLREAYKFLRRIAANGGKILFVGTKKQ----------------AQEPVKEFAERTGAYYVNGRW 96 (252)
T ss_pred CCcEEEEHHHHHH---HHHHHHHHHHHHHcCCCEEEEEechHH----------------HHHHHHHHHHHhCCceecCcc
Confidence 6888887543221 11112233333 1344578888854 445677788888877654333
Q ss_pred eecC-CCCCCHHHHHHH---HHHHHHcCcccEEEcCccc-------HHHHHHHhhc-----CCeeEEeeccCccCcCchh
Q 025658 127 QHRI-DTRVPIEVTIGE---LKKLVEEGKIKYIGLSEAS-------ASTIRRAHAV-----HPITAVQLEWSLWSRDVEA 190 (249)
Q Consensus 127 lh~~-~~~~~~~~~~~~---l~~l~~~G~ir~iGvs~~~-------~~~l~~~~~~-----~~~~~~q~~~n~~~~~~~~ 190 (249)
|-.. .+...+...++. |+.+.+.| .-+++--. .+.|++.+.- .-|+++- +.++..+.
T Consensus 97 LgG~LTN~~ti~~si~rl~~lE~~~~~~---~~~~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd~l~----ViDp~~e~ 169 (252)
T COG0052 97 LGGMLTNFKTIRKSIKRLKELEKMEEDG---FDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVLF----VIDPRKEK 169 (252)
T ss_pred cCccccCchhHHHHHHHHHHHHHHhhcc---cccccHHHHHHHHHHHHHHHHhhcchhhccCCCCEEE----EeCCcHhH
Confidence 3221 222334443444 45555666 33333211 1223333221 1244433 34666677
Q ss_pred hHHHHHHHcCCeEEEcc
Q 025658 191 EIVPTCRELGIGIVAYS 207 (249)
Q Consensus 191 ~~~~~~~~~gi~v~a~s 207 (249)
..+..|++.||+|+|.-
T Consensus 170 iAv~EA~klgIPVvAlv 186 (252)
T COG0052 170 IAVKEANKLGIPVVALV 186 (252)
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 89999999999999853
No 233
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=27.84 E-value=4e+02 Score=23.06 Aligned_cols=96 Identities=18% Similarity=0.124 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCC----CCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhh-cCCeeE
Q 025658 102 DPAYVRAACEASLKRLDIDCIDLYYQHRIDT----RVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHA-VHPITA 176 (249)
Q Consensus 102 ~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~----~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~-~~~~~~ 176 (249)
..+.+++.+.+-+++.|+|++=++.+-.-+. .....+++++|++..+++.-. .++..+-.... ......
T Consensus 130 ~~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl~~g~~f 203 (295)
T PF07994_consen 130 QVEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAALEAGVPF 203 (295)
T ss_dssp HHHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHHHHCCCCe
Confidence 4466788899999999988655555544322 123345788888888876632 23333222111 122222
Q ss_pred EeeccCccCcCchhhHHHHHHHcCCeEEE
Q 025658 177 VQLEWSLWSRDVEAEIVPTCRELGIGIVA 205 (249)
Q Consensus 177 ~q~~~n~~~~~~~~~~~~~~~~~gi~v~a 205 (249)
+-..-+.... ...+.+.++++|+.+..
T Consensus 204 vN~tP~~~a~--~P~l~ela~~~gvpi~G 230 (295)
T PF07994_consen 204 VNGTPSNIAD--DPALVELAEEKGVPIAG 230 (295)
T ss_dssp EE-SSSTTTT--SHHHHHHHHHHTEEEEE
T ss_pred EeccCccccC--CHHHHHHHHHcCCCeec
Confidence 2222222221 23777888888877664
No 234
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=27.66 E-value=5.1e+02 Score=24.19 Aligned_cols=24 Identities=4% Similarity=0.146 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcC
Q 025658 36 PESDMIALIHHAINSGITLLDTSD 59 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~ 59 (249)
+.++-.++.+...+.||..|+...
T Consensus 21 s~e~K~~ia~~L~~~GV~~IEvG~ 44 (494)
T TIGR00973 21 TVEEKLQIALALERLGVDIIEAGF 44 (494)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEC
Confidence 557788888888899999999753
No 235
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=27.65 E-value=3.9e+02 Score=22.90 Aligned_cols=141 Identities=16% Similarity=0.202 Sum_probs=80.5
Q ss_pred HHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCC
Q 025658 40 MIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDI 119 (249)
Q Consensus 40 ~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~ 119 (249)
..++-+...++|+|..|....-. . ....++....+... ...+.+.+++.++...+.|++
T Consensus 21 Va~VT~~La~~~vNI~dls~~~~---~-----------~~~~F~m~~~~~~p-------~~~~~~~L~~~L~~l~~~l~l 79 (286)
T PRK13011 21 VAAVTGFLAEHGCYITELHSFDD---R-----------LSGRFFMRVEFHSE-------EGLDEDALRAGFAPIAARFGM 79 (286)
T ss_pred HHHHHHHHHhCCCCEEEeeeeec---C-----------CCCeEEEEEEEecC-------CCCCHHHHHHHHHHHHHHhCc
Confidence 55566666799999999876521 0 12234443343211 135688999999999999997
Q ss_pred CccceEEeecCCCC-------CCHHHHHHHHHHHHHcCcc--cEEE-cCcccHHHHHHHhhcCCeeEEeeccCccCcC-c
Q 025658 120 DCIDLYYQHRIDTR-------VPIEVTIGELKKLVEEGKI--KYIG-LSEASASTIRRAHAVHPITAVQLEWSLWSRD-V 188 (249)
Q Consensus 120 ~~lDl~~lh~~~~~-------~~~~~~~~~l~~l~~~G~i--r~iG-vs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~ 188 (249)
+ +.++.+... ..-...+++|-+..+.|.. .-.. +||.. .+..+++...+.+.+++....++. .
T Consensus 80 ~----i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~--~~~~lA~~~gIp~~~~~~~~~~~~~~ 153 (286)
T PRK13011 80 Q----WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHP--DLEPLAAWHGIPFHHFPITPDTKPQQ 153 (286)
T ss_pred E----EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCc--cHHHHHHHhCCCEEEeCCCcCchhhh
Confidence 5 344443332 1123457788877888864 3333 35542 222233444444555544332222 2
Q ss_pred hhhHHHHHHHcCCeEEEcc
Q 025658 189 EAEIVPTCRELGIGIVAYS 207 (249)
Q Consensus 189 ~~~~~~~~~~~gi~v~a~s 207 (249)
+..+.+..++.++.++.-.
T Consensus 154 ~~~~~~~l~~~~~Dlivla 172 (286)
T PRK13011 154 EAQVLDVVEESGAELVVLA 172 (286)
T ss_pred HHHHHHHHHHhCcCEEEEe
Confidence 4467888888887766443
No 236
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=27.33 E-value=49 Score=24.98 Aligned_cols=20 Identities=30% Similarity=0.253 Sum_probs=13.9
Q ss_pred HHHHHHHhcCCCEEeCcCCc
Q 025658 42 ALIHHAINSGITLLDTSDIY 61 (249)
Q Consensus 42 ~~l~~A~~~Gi~~~DtA~~Y 61 (249)
..+...++.|||+||---.+
T Consensus 30 ~~i~~QL~~GiR~lDlrv~~ 49 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLRVWD 49 (146)
T ss_dssp HHHHHHHHTT--EEEEEEEE
T ss_pred HhHHHHHhccCceEEEEEEc
Confidence 35888999999999975443
No 237
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=27.22 E-value=3.8e+02 Score=22.61 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEeC
Q 025658 36 PESDMIALIHHAINSGITLLDT 57 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~Dt 57 (249)
.+|.....++.|++.|+..|++
T Consensus 13 ~PENTl~Af~~A~~~G~d~iE~ 34 (263)
T cd08580 13 APENTLLAISKALANGADAIWL 34 (263)
T ss_pred CCccHHHHHHHHHHcCCCEEEE
Confidence 3467888999999999999985
No 238
>COG1854 LuxS LuxS protein involved in autoinducer AI2 synthesis [Signal transduction mechanisms]
Probab=27.20 E-value=36 Score=26.35 Aligned_cols=56 Identities=20% Similarity=0.336 Sum_probs=34.4
Q ss_pred cccCcceecccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHH
Q 025658 15 LEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKA 73 (249)
Q Consensus 15 ~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~ 73 (249)
+.+|++|+-|.-.-..||.+ +.+++.++++++++-=.++-|-.+.-| .+|...|.+
T Consensus 75 ID~SPMGCrTGFYm~l~G~~-~~~~i~~~~~~~m~dvl~~~~~~~IP~--~ne~qCG~y 130 (161)
T COG1854 75 IDISPMGCRTGFYMILIGTP-TSQDIADVLEATMKDVLKVQDQEEIPG--ANEKQCGNY 130 (161)
T ss_pred EEecCcccccceEEEEECCC-CHHHHHHHHHHHHHHHHcccccccCCc--cChhhccch
Confidence 66888887775443346665 556788888888875455444433333 455555543
No 239
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=27.12 E-value=2.1e+02 Score=23.94 Aligned_cols=97 Identities=14% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCccc--------EEEcCcccHHHHHHHhhcCCeeEEee
Q 025658 108 AACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK--------YIGLSEASASTIRRAHAVHPITAVQL 179 (249)
Q Consensus 108 ~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir--------~iGvs~~~~~~l~~~~~~~~~~~~q~ 179 (249)
+.++..|+-.| +|+|.+=+-|-.....-++.++..-++.++--|. .+-++.-..+++.+..+...|+++.+
T Consensus 12 ~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEi 90 (237)
T TIGR03849 12 KFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEI 90 (237)
T ss_pred HHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEE
Q ss_pred ccCccCcCchh--hHHHHHHHcCCeEEE
Q 025658 180 EWSLWSRDVEA--EIVPTCRELGIGIVA 205 (249)
Q Consensus 180 ~~n~~~~~~~~--~~~~~~~~~gi~v~a 205 (249)
.-..+.-..+. .+++.++++|..+..
T Consensus 91 S~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 91 SDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred cCCccCCCHHHHHHHHHHHHhCCCeEec
No 240
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=27.07 E-value=3.4e+02 Score=21.97 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCc
Q 025658 36 PESDMIALIHHAINSGITLLDTS 58 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA 58 (249)
.+|.....++.|++.|+..|++-
T Consensus 13 ~pENT~~Af~~A~~~g~~~vE~D 35 (230)
T cd08563 13 APENTLLAFKKAIEAGADGIELD 35 (230)
T ss_pred CCchhHHHHHHHHHcCCCEEEEE
Confidence 34678889999999999999863
No 241
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=26.97 E-value=1.2e+02 Score=21.78 Aligned_cols=51 Identities=10% Similarity=0.098 Sum_probs=33.3
Q ss_pred CcccHHHHHHHhhc-CCeeEEeeccCccCcCchhhHHHHHHHcCCeEEEccc
Q 025658 158 SEASASTIRRAHAV-HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSP 208 (249)
Q Consensus 158 s~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~sp 208 (249)
+..+.+.+..+... .+++++-+-..--...+..++.++++++||++..+..
T Consensus 37 ~~l~~~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T 88 (110)
T PF04430_consen 37 HDLTPEDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDT 88 (110)
T ss_dssp TCEETHHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-H
T ss_pred ccCCHHHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECH
Confidence 34567788887766 3467766655444444566999999999999887653
No 242
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=26.96 E-value=3.3e+02 Score=21.71 Aligned_cols=100 Identities=15% Similarity=0.175 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHcCCCccceEEeecCC--CCCCHHHHHHHHHHHHHcCcccEEEcCcccHH--HHHHHhhcCCeeEEee
Q 025658 104 AYVRAACEASLKRLDIDCIDLYYQHRID--TRVPIEVTIGELKKLVEEGKIKYIGLSEASAS--TIRRAHAVHPITAVQL 179 (249)
Q Consensus 104 ~~i~~~~~~sL~rLg~~~lDl~~lh~~~--~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~--~l~~~~~~~~~~~~q~ 179 (249)
..+...+...+++.+..- +-+.+--.+ .........+.+..|++.|- .+.+.++... .+..+ ...+++.+=+
T Consensus 99 ~~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l-~~l~~d~iKl 174 (241)
T smart00052 99 PDLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYL-KRLPVDLLKI 174 (241)
T ss_pred chHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHH-HhCCCCeEEE
Confidence 335566777777766542 223333222 12334445588999999997 4555555432 23333 2345566655
Q ss_pred ccCccCc--------CchhhHHHHHHHcCCeEEEcc
Q 025658 180 EWSLWSR--------DVEAEIVPTCRELGIGIVAYS 207 (249)
Q Consensus 180 ~~n~~~~--------~~~~~~~~~~~~~gi~v~a~s 207 (249)
..++... ..-..++..|+..|+.+++-+
T Consensus 175 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 210 (241)
T smart00052 175 DKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEG 210 (241)
T ss_pred CHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEec
Confidence 5443321 122367889999999988653
No 243
>PRK15108 biotin synthase; Provisional
Probab=26.90 E-value=4.4e+02 Score=23.21 Aligned_cols=114 Identities=15% Similarity=0.174 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHhcCCCEEeCcCCc-CC-ChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHH
Q 025658 35 KPESDMIALIHHAINSGITLLDTSDIY-GP-HTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEA 112 (249)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Y-g~-g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 112 (249)
.+.+++.+..+.+.+.|++-|-..... .. ...-+.+.+.++.++...+.++.-.+ ..+.+.+ +
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G----------~ls~e~l-----~ 140 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLG----------TLSESQA-----Q 140 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCC----------cCCHHHH-----H
Confidence 477888888888889999998443221 11 11224455555543222233332232 1233333 2
Q ss_pred HHHHcCCCccceEEeecC------CCCCCHHHHHHHHHHHHHcCccc----EEEcCcccHH
Q 025658 113 SLKRLDIDCIDLYYQHRI------DTRVPIEVTIGELKKLVEEGKIK----YIGLSEASAS 163 (249)
Q Consensus 113 sL~rLg~~~lDl~~lh~~------~~~~~~~~~~~~l~~l~~~G~ir----~iGvs~~~~~ 163 (249)
-|+..|++++.+-+=-.| -.....++.++.++.+++.|.-- -+|+.....+
T Consensus 141 ~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed 201 (345)
T PRK15108 141 RLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKD 201 (345)
T ss_pred HHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHH
Confidence 355556664332211111 11245788999999999999643 3555443333
No 244
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=26.85 E-value=2.6e+02 Score=26.82 Aligned_cols=103 Identities=10% Similarity=0.063 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCC--CCHHHHHHHHHHHHHcC-ccc---------EEEcCcccHHHHHHH
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR--VPIEVTIGELKKLVEEG-KIK---------YIGLSEASASTIRRA 168 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~--~~~~~~~~~l~~l~~~G-~ir---------~iGvs~~~~~~l~~~ 168 (249)
.+.+.... +-..|.+.|...+++.-=...+.. .--++.|+.|+++++.. .++ .+|.+++..+.+++.
T Consensus 23 ~~t~d~l~-ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~ 101 (592)
T PRK09282 23 MRTEDMLP-IAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKF 101 (592)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHH
Confidence 33444433 556688889888888300001100 01235788888888763 233 245555555544433
Q ss_pred hhc---CCeeEEeeccCccCcCchhhHHHHHHHcCCeEE
Q 025658 169 HAV---HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIV 204 (249)
Q Consensus 169 ~~~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~ 204 (249)
++. ..++++.+-..+.+...-...+++++++|..+.
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~ 140 (592)
T PRK09282 102 VEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQ 140 (592)
T ss_pred HHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEE
Confidence 322 345666665555444334467888888887766
No 245
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=26.83 E-value=1e+02 Score=26.62 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHcCCCcc--ceEEeecCCCCCCHHHHHHHHHHHHHcCcccE
Q 025658 103 PAYVRAACEASLKRLDIDCI--DLYYQHRIDTRVPIEVTIGELKKLVEEGKIKY 154 (249)
Q Consensus 103 ~~~i~~~~~~sL~rLg~~~l--Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~ 154 (249)
.+...+.+.+.+++||+..- ..+.-+.+ ...+.+++.+.+|+++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEP---EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCH---HHHHHHHHHHHHHHHCCCEEe
Confidence 46677888999999998532 22222222 346678999999999999854
No 246
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=26.76 E-value=4.7e+02 Score=23.52 Aligned_cols=87 Identities=10% Similarity=0.005 Sum_probs=52.8
Q ss_pred ceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhc-CCeeEEeeccCccCcC-chhhHHHHHHHcC
Q 025658 123 DLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV-HPITAVQLEWSLWSRD-VEAEIVPTCRELG 200 (249)
Q Consensus 123 Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~~~~~~~~~g 200 (249)
|-+++..|.. ..++..+..+.+.+.++.+-+...+.+.+++++.. ..+.++..+-|+.-.. .-.++.+.|+++|
T Consensus 100 D~Vvv~~p~Y----~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~g 175 (405)
T PRK08776 100 DTLVVPHDAY----GGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVG 175 (405)
T ss_pred CEEEEccCCc----hHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcC
Confidence 5566655433 33555555555555566666655577888877643 3344445455554322 2347899999999
Q ss_pred CeEEEcccCcccc
Q 025658 201 IGIVAYSPLGRGF 213 (249)
Q Consensus 201 i~v~a~spl~~G~ 213 (249)
+.++.=..++.+.
T Consensus 176 i~vIvD~a~a~~~ 188 (405)
T PRK08776 176 ALTVVDNTFLSPA 188 (405)
T ss_pred CEEEEECCCcccc
Confidence 9998766665543
No 247
>PLN02666 5-oxoprolinase
Probab=26.75 E-value=7e+02 Score=26.57 Aligned_cols=99 Identities=16% Similarity=0.130 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEeCcC--CcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCC---------
Q 025658 34 PKPESDMIALIHHAINSGITLLDTSD--IYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGD--------- 102 (249)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~DtA~--~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~--------- 102 (249)
+.++++.+++++...+.|+.-+-.+- +|-+...|+.+.+.+++...-.+.+++.+......- .+.+
T Consensus 172 plde~~v~~~~~~l~~~gv~avAV~~l~S~~NP~HE~~v~ei~~e~~~~~VslShei~~~~~e~---eR~~TavlnAyl~ 248 (1275)
T PLN02666 172 PLDEEALRPLLQGLLDKGIRSLAVVLMHSYTYPAHERAVGKLARSMGFKQVSLSSALVPMVRAV---PRGHTASVDAYLT 248 (1275)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeecCcCChHHHHHHHHHHHhcCCCcEEEcchhhhhcccc---chHHHHHHHHHHH
Confidence 56888899999999999999887764 455668999999999874334577777776532110 0110
Q ss_pred --HHHHHHHHHHHHHHcCCCccceEEeecCCCCCCH
Q 025658 103 --PAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPI 136 (249)
Q Consensus 103 --~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~ 136 (249)
-......+++.|+..+.+ .+++++++.....++
T Consensus 249 p~~~~yl~~l~~~l~~~g~~-~~l~im~sdGG~~~~ 283 (1275)
T PLN02666 249 PVIKEYLSGFLSGFDDGLGD-VNVLFMQSDGGLTPE 283 (1275)
T ss_pred HHHHHHHHHHHHHHHhcCCC-CCEEEEecCCCcCCH
Confidence 122334455555554543 478888886544443
No 248
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=26.63 E-value=4.5e+02 Score=23.19 Aligned_cols=73 Identities=12% Similarity=-0.017 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCC-CHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhcCC
Q 025658 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRV-PIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHP 173 (249)
Q Consensus 100 ~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 173 (249)
+.+.+.-.+-.+-+++-++++.+=|=.+....... +..+++++.++|.++|..-. =+|+-++....++.+.++
T Consensus 146 ~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~-~yc~~d~~~a~~l~~~g~ 219 (326)
T PRK11840 146 CYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVM-VYCSDDPIAAKRLEDAGA 219 (326)
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHhcCC
Confidence 56777777778888888898877766665544433 58899999999999999653 345556666666666554
No 249
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=26.49 E-value=2e+02 Score=24.62 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhc--CCCEEeCcCCcCCChHHHHHHHHhcCCC-CCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHH
Q 025658 38 SDMIALIHHAINS--GITLLDTSDIYGPHTNEILLGKALKGGM-RERVELATKFGISFADGKREIRGDPAYVRAACEASL 114 (249)
Q Consensus 38 ~~~~~~l~~A~~~--Gi~~~DtA~~Yg~g~se~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL 114 (249)
+.+..+.++|+.. |+.+.-. .|..=.++..+-+++.+.. .+.+++.|=+- ..+++.+++.+
T Consensus 16 eTAe~v~~A~l~QF~~~~~~~~--~~p~v~~~~~~~~i~~~~~~~~~iV~~Tlv~--------------~elr~~l~~~~ 79 (269)
T PRK05339 16 ETAETVGRAALSQFPNVEFEEH--RYPFVRTEEKADEVLEEINAERPIVFYTLVD--------------PELREILEERC 79 (269)
T ss_pred HHHHHHHHHHHHhCCCCCeeEE--EeCCcCCHHHHHHHHHHHHhcCCEEEEeCCC--------------HHHHHHHHHHH
Confidence 5566777777754 4443211 1221136666666666533 33455555442 45889999999
Q ss_pred HHcCCCccceEE
Q 025658 115 KRLDIDCIDLYY 126 (249)
Q Consensus 115 ~rLg~~~lDl~~ 126 (249)
+.+|+.++|++-
T Consensus 80 ~~~~i~~vdll~ 91 (269)
T PRK05339 80 AEFGIPCIDILG 91 (269)
T ss_pred HHcCCCEEeccH
Confidence 999999999974
No 250
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=26.35 E-value=1.4e+02 Score=22.44 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeE
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVE 83 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~ 83 (249)
+.++.+++.+.|.+.|+.++|-...=-...+.....+.+++.+.+++.
T Consensus 62 ~~~~L~~l~~~a~~~~i~~~~F~~~aq~~~~y~e~~~~~~~~~~~~l~ 109 (133)
T PF09391_consen 62 NSEQLRELRQKALEREITVVDFTDEAQSTGHYEEYRAAVAATPEEDLE 109 (133)
T ss_dssp -HHHHHHHHHHHHHTT---EEEEGGGGG---HHHHHHHHTT--TTT--
T ss_pred CHHHHHHHHHHHHHCCCeEEeChHHHhhCCCHHHHHHHHhcCChhhcc
Confidence 568899999999999998888654332223444445556654444443
No 251
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=26.27 E-value=1.4e+02 Score=24.11 Aligned_cols=59 Identities=22% Similarity=0.247 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCcccEEEcCc-ccHHHHHHHhhcCCeeEEeeccCccCcCchhhHHHHHHHcCCeEEE
Q 025658 140 IGELKKLVEEGKIKYIGLSE-ASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVA 205 (249)
Q Consensus 140 ~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a 205 (249)
.+.++.++++--=-.||..+ .+.++++++++.+. ++-.++ ....+++++|+++|+.++.
T Consensus 47 ~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA----~FivSP---~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 47 LEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGA----QFIVSP---GFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-----SEEEES---S--HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCC----CEEECC---CCCHHHHHHHHHcCCcccC
Confidence 33344344332224577776 67888888877642 111122 2345999999999998774
No 252
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=26.12 E-value=4.7e+02 Score=23.23 Aligned_cols=97 Identities=18% Similarity=0.141 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCc-ccEEEcCcccHHHHHHHhhcCCeeEEe
Q 025658 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGK-IKYIGLSEASASTIRRAHAVHPITAVQ 178 (249)
Q Consensus 100 ~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q 178 (249)
..+.+... .+-+.|.++|+++|.+- +|.. -++.++.++.+.+.+. .+-.+++....+.++.+.+.+ ++.+.
T Consensus 18 ~~s~~~k~-~ia~~L~~~Gv~~IEvG---~p~~---~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g-~~~i~ 89 (363)
T TIGR02090 18 SLTVEQKV-EIARKLDELGVDVIEAG---FPIA---SEGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCG-VDSIH 89 (363)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEe---CCCC---ChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcC-cCEEE
Confidence 34454444 45666999999888864 3321 1234677777766555 455556667788888877653 33444
Q ss_pred eccCc--cC------cC------chhhHHHHHHHcCCeEE
Q 025658 179 LEWSL--WS------RD------VEAEIVPTCRELGIGIV 204 (249)
Q Consensus 179 ~~~n~--~~------~~------~~~~~~~~~~~~gi~v~ 204 (249)
+.... .. .. .-.+.+++++++|+.+.
T Consensus 90 i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 90 TFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 42222 11 11 11267889999998754
No 253
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=25.91 E-value=2.2e+02 Score=20.80 Aligned_cols=50 Identities=12% Similarity=0.146 Sum_probs=31.7
Q ss_pred cccHHHHHHHhhc-CCeeEEeeccCccCcCchhhHHHHHHHcCCeEEEccc
Q 025658 159 EASASTIRRAHAV-HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSP 208 (249)
Q Consensus 159 ~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~sp 208 (249)
..+.+.+..+... ..++++-+-...-.+....++.+.++++||++..+..
T Consensus 39 ~l~~~~l~~l~~~~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T 89 (114)
T cd05125 39 DITEESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDT 89 (114)
T ss_pred hCCHHHHHHHHhccCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECH
Confidence 3456666666543 3456665555544444556888899999988876654
No 254
>PRK03995 hypothetical protein; Provisional
Probab=25.76 E-value=2.5e+02 Score=23.94 Aligned_cols=81 Identities=19% Similarity=0.096 Sum_probs=46.8
Q ss_pred ccCcceecccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCC-hHHHHHHHHhcC-CCC-CCeEEEeecCccc
Q 025658 16 EVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPH-TNEILLGKALKG-GMR-ERVELATKFGISF 92 (249)
Q Consensus 16 ~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g-~se~~lg~~l~~-~~r-~~~~i~tK~~~~~ 92 (249)
..+.+|||+... +.+.-+.|++.++.+=...+.|.-. .++..+-+++.. ..+ +.++|--|.-
T Consensus 181 ~~~~iGiGGgHY------------apr~T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks~~~~~~~~id~K~~--- 245 (267)
T PRK03995 181 FKPAIGIGGGHY------------APKFTKLALESEYCFGHIIPKYALDHLSEEVLIQAIEKSTPEIDRIVIDWKGV--- 245 (267)
T ss_pred CCEEEEECCCCc------------cHHHHHHHhhCCeeEEeEccccchhcCCHHHHHHHHHhccCCCCEEEEecCCC---
Confidence 356667777543 2233455666677776777777532 456667777765 122 2333333432
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHHcCCCc
Q 025658 93 ADGKREIRGDPAYVRAACEASLKRLDIDC 121 (249)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~sL~rLg~~~ 121 (249)
....++.+.+.|+.+|++-
T Consensus 246 ----------k~~~r~~i~~~le~~gi~v 264 (267)
T PRK03995 246 ----------KSEDRERIIEFLEELGIEV 264 (267)
T ss_pred ----------CHHHHHHHHHHHHHCCCeE
Confidence 3346777888888888653
No 255
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=25.69 E-value=1.8e+02 Score=24.17 Aligned_cols=57 Identities=14% Similarity=0.317 Sum_probs=37.2
Q ss_pred cHHHHHHHhhcCCeeEEee----ccCccCcC---chhhHHHHHHHcCCeEEEcccCccccCCCC
Q 025658 161 SASTIRRAHAVHPITAVQL----EWSLWSRD---VEAEIVPTCRELGIGIVAYSPLGRGFFSSG 217 (249)
Q Consensus 161 ~~~~l~~~~~~~~~~~~q~----~~n~~~~~---~~~~~~~~~~~~gi~v~a~spl~~G~l~~~ 217 (249)
++.++..+.+...+.++-+ +||.|+.. -..++.++++.-|-.-+..-|+..|...+.
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~ 113 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGT 113 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCc
Confidence 4555666655544333332 56666653 123788999999999999999988765543
No 256
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=25.56 E-value=1.6e+02 Score=23.34 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=28.1
Q ss_pred cceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcc
Q 025658 122 IDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEA 160 (249)
Q Consensus 122 lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~ 160 (249)
-++++++.......-.+-+..|..++.+|++|++-+.-+
T Consensus 78 n~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG~~ 116 (173)
T PF10171_consen 78 NDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLGLF 116 (173)
T ss_pred CceeccChhhcCchHHHHHHHHHHHhcCCceEEeeeeeE
Confidence 456677655444445678899999999999998766443
No 257
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=25.52 E-value=4.2e+02 Score=22.54 Aligned_cols=70 Identities=10% Similarity=-0.072 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHHc------CCCccceEEeecCCCCC-CHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhh
Q 025658 100 RGDPAYVRAACEASLKRL------DIDCIDLYYQHRIDTRV-PIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHA 170 (249)
Q Consensus 100 ~~~~~~i~~~~~~sL~rL------g~~~lDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 170 (249)
..+.+.-.+-.+-+++-+ +++.|=+=.+..+.... +..+++++-+.|.++|-+-. =.++-++-...++.+
T Consensus 80 c~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~Vl-PY~~~D~v~a~rLed 156 (267)
T CHL00162 80 CQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVL-PYINADPMLAKHLED 156 (267)
T ss_pred CCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEe-ecCCCCHHHHHHHHH
Confidence 456666555555555555 45555555554444433 45789999999999997542 233334433334333
No 258
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=25.50 E-value=4e+02 Score=22.24 Aligned_cols=25 Identities=12% Similarity=0.107 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCC
Q 025658 36 PESDMIALIHHAINSGITLLDTSDI 60 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~ 60 (249)
.+|.....++.|++.|+..|++--.
T Consensus 11 ~pENTl~af~~A~~~Gad~iE~DV~ 35 (258)
T cd08573 11 APENTLAAFRQAKKNGADGVEFDLE 35 (258)
T ss_pred CCccHHHHHHHHHHcCCCEEEEEee
Confidence 3467889999999999999986443
No 259
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=25.21 E-value=5e+02 Score=23.58 Aligned_cols=116 Identities=9% Similarity=-0.034 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCCCEE-e-CcCC-cCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHH
Q 025658 37 ESDMIALIHHAINSGITLL-D-TSDI-YGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEAS 113 (249)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~-D-tA~~-Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~s 113 (249)
.....++++.+-+.|++.. + |... +. +++.+-+.++. .-+.+.++.|..-............++.+.+.++..
T Consensus 88 ~~~l~eLl~~lk~~gi~taI~~TnG~~l~---~~e~~~~L~~~-gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L 163 (404)
T TIGR03278 88 YPELEELTKGLSDLGLPIHLGYTSGKGFD---DPEIAEFLIDN-GVREVSFTVFATDPELRREWMKDPTPEASLQCLRRF 163 (404)
T ss_pred CHHHHHHHHHHHhCCCCEEEeCCCCcccC---CHHHHHHHHHc-CCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3567888888888887643 4 4432 33 45554554442 235677877765211000000111225565656554
Q ss_pred HHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCccc
Q 025658 114 LKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEAS 161 (249)
Q Consensus 114 L~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 161 (249)
.+. ..-.+-++++...++...+.++++.|.++ | +..+|+..|-
T Consensus 164 ~e~-~~v~~~ivlIPGiND~eel~~ti~~L~~l---g-~~~V~L~~y~ 206 (404)
T TIGR03278 164 CES-CEVHAASVIIPGVNDGDVLWKTCADLESW---G-AKALILMRFA 206 (404)
T ss_pred Hhc-CCEEEEEEEeCCccCcHHHHHHHHHHHHC---C-CCEEEEEecc
Confidence 442 22223444444444333334455555444 3 4567776554
No 260
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=25.19 E-value=61 Score=24.37 Aligned_cols=21 Identities=10% Similarity=0.064 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCCCEEeCcCCc
Q 025658 41 IALIHHAINSGITLLDTSDIY 61 (249)
Q Consensus 41 ~~~l~~A~~~Gi~~~DtA~~Y 61 (249)
...+..+++.|+|+||.--.+
T Consensus 31 ~~~i~~qL~~GvR~~dirv~~ 51 (135)
T smart00148 31 VEGYIQALDHGCRCVELDCWD 51 (135)
T ss_pred HHHHHHHHHhCCCEEEEEccc
Confidence 356888999999999975433
No 261
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=25.10 E-value=4.3e+02 Score=22.51 Aligned_cols=113 Identities=15% Similarity=0.107 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHH---HHcCCCccceEEeecCCC-CCCHHHHHHHHHHHHHcCcccEEEcCc----ccHHHHHHHhhcC-
Q 025658 102 DPAYVRAACEASL---KRLDIDCIDLYYQHRIDT-RVPIEVTIGELKKLVEEGKIKYIGLSE----ASASTIRRAHAVH- 172 (249)
Q Consensus 102 ~~~~i~~~~~~sL---~rLg~~~lDl~~lh~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvs~----~~~~~l~~~~~~~- 172 (249)
+++...+.+.+.. +..|. .+.+.+-++..+ ..+.+...+..+++.+.| +..|.++. ..|.++.++++..
T Consensus 109 t~~e~l~~~~~~i~~a~~~G~-~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~~l~~~l~ 186 (280)
T cd07945 109 TPEEHFADIREVIEYAIKNGI-EVNIYLEDWSNGMRDSPDYVFQLVDFLSDLP-IKRIMLPDTLGILSPFETYTYISDMV 186 (280)
T ss_pred CHHHHHHHHHHHHHHHHhCCC-EEEEEEEeCCCCCcCCHHHHHHHHHHHHHcC-CCEEEecCCCCCCCHHHHHHHHHHHH
Confidence 4444444444433 33453 455555553322 345666777777787777 66777775 4466655544321
Q ss_pred -CeeEEeeccCccCc-CchhhHHHHHHHcCCeEEEcccCccccCCC
Q 025658 173 -PITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAYSPLGRGFFSS 216 (249)
Q Consensus 173 -~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~spl~~G~l~~ 216 (249)
.+.-+.+.++.-+. .......-.+-+.|+..+--+-.+.|--+|
T Consensus 187 ~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe~aG 232 (280)
T cd07945 187 KRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGERAG 232 (280)
T ss_pred hhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccccccccc
Confidence 11112223332221 222234445667888888777777674444
No 262
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=25.06 E-value=5.7e+02 Score=23.89 Aligned_cols=132 Identities=12% Similarity=0.165 Sum_probs=69.8
Q ss_pred HHHHHHHHhcC----CCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHH-HH
Q 025658 66 NEILLGKALKG----GMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEV-TI 140 (249)
Q Consensus 66 se~~lg~~l~~----~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~-~~ 140 (249)
+++-+-++|++ .+.+-|+|.+-.. ++-|-..++...++++.+.++++.++.|........ .-
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sTC~-------------selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~ 135 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPSCT-------------SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAAD 135 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCCh-------------HHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHH
Confidence 55666666665 3333455555432 333434444445555544588999999876554221 22
Q ss_pred HHHHHHH--------------HcCcccEEEcCcc------cHHHHHHHhhcCCeeEEee-cc---------------Ccc
Q 025658 141 GELKKLV--------------EEGKIKYIGLSEA------SASTIRRAHAVHPITAVQL-EW---------------SLW 184 (249)
Q Consensus 141 ~~l~~l~--------------~~G~ir~iGvs~~------~~~~l~~~~~~~~~~~~q~-~~---------------n~~ 184 (249)
.+++.++ +++.|.-||.++. +...+.++++...+.++.+ +. |+.
T Consensus 136 ~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l~~A~~NIv 215 (511)
T TIGR01278 136 RTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLARLPAAWLNIC 215 (511)
T ss_pred HHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhcccCcEEEE
Confidence 2333222 2456888898763 3456777777655555543 22 221
Q ss_pred -CcCchhhHHHHHH-HcCCeEEEcccCc
Q 025658 185 -SRDVEAEIVPTCR-ELGIGIVAYSPLG 210 (249)
Q Consensus 185 -~~~~~~~~~~~~~-~~gi~v~a~spl~ 210 (249)
++.....+-++.+ +.|++++...|++
T Consensus 216 ~~~~~g~~~A~~Le~~fGiP~i~~~PiG 243 (511)
T TIGR01278 216 PYREIGLMAAEYLKEKFGQPYITTTPIG 243 (511)
T ss_pred echHHHHHHHHHHHHHhCCCcccccccC
Confidence 1111112344443 4499988777774
No 263
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=25.01 E-value=4.7e+02 Score=22.90 Aligned_cols=106 Identities=14% Similarity=0.150 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcC
Q 025658 39 DMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLD 118 (249)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg 118 (249)
..+++++.+-+.|| .+|.|.. +++.+=.++.- .+..+|+|...... ..+..+.-..++++...++=|
T Consensus 150 ~Gk~lV~~~N~LgI-iiDlSH~-----s~kt~~Dvl~~--s~~PviaSHSN~~a-----l~~h~RNl~D~qlkaI~~~gG 216 (313)
T COG2355 150 FGKELVREMNELGI-IIDLSHL-----SDKTFWDVLDL--SKAPVVASHSNARA-----LVDHPRNLSDEQLKAIAETGG 216 (313)
T ss_pred HHHHHHHHHHhcCC-EEEeccc-----CCccHHHHHhc--cCCceEEecCCchh-----ccCCCCCCCHHHHHHHHhcCC
Confidence 48999999999997 6898863 55666666663 45566776655432 112333334455555555555
Q ss_pred CCccceEEeecC-----CCCCCHHHHHHHHHHHHHcCcccEEEcCc
Q 025658 119 IDCIDLYYQHRI-----DTRVPIEVTIGELKKLVEEGKIKYIGLSE 159 (249)
Q Consensus 119 ~~~lDl~~lh~~-----~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 159 (249)
+ |.+..+-.. ....++++..+.++.+++.+=+++||+..
T Consensus 217 v--Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 217 V--IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred E--EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 3 333333221 13457889999999999999999999974
No 264
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=24.69 E-value=3e+02 Score=22.34 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=23.7
Q ss_pred HHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcc
Q 025658 114 LKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEA 160 (249)
Q Consensus 114 L~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~ 160 (249)
++.++ +|++|||...+ .+.++.|.+...-..++.+.+.+.
T Consensus 73 ~~~~~---~d~vQLHg~e~----~~~~~~l~~~~~~~iik~i~v~~~ 112 (210)
T PRK01222 73 VETVP---LDLLQLHGDET----PEFCRQLKRRYGLPVIKALRVRSA 112 (210)
T ss_pred HHhcC---CCEEEECCCCC----HHHHHHHHhhcCCcEEEEEecCCH
Confidence 34454 68899998643 223344433323457888888753
No 265
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=24.64 E-value=5.1e+02 Score=23.22 Aligned_cols=122 Identities=14% Similarity=0.043 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhcCCCEEeCcCCcCC--ChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHH
Q 025658 38 SDMIALIHHAINSGITLLDTSDIYGP--HTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLK 115 (249)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 115 (249)
++..++++.|++.|+.-|=+...|.. ..++..+-+.++...+....|.+..-... ....+.+.+.++.+.
T Consensus 167 ~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~-------~~e~~av~~~~~~a~- 238 (415)
T cd01297 167 AKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEG-------DSILEALDELLRLGR- 238 (415)
T ss_pred HHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccc-------ccHHHHHHHHHHHHH-
Confidence 34667788889999988866655643 34666666666553333455555543111 123344555554443
Q ss_pred HcCCCccceEEeecC--CC--CCCHHHHHHHHHHHHHcCcccEEEcCccc---HHHHHHHhh
Q 025658 116 RLDIDCIDLYYQHRI--DT--RVPIEVTIGELKKLVEEGKIKYIGLSEAS---ASTIRRAHA 170 (249)
Q Consensus 116 rLg~~~lDl~~lh~~--~~--~~~~~~~~~~l~~l~~~G~ir~iGvs~~~---~~~l~~~~~ 170 (249)
+.|. . +.+.|-. .. ...+.++++.+++.+++|.--...++.+. .+.+.++++
T Consensus 239 ~~g~-r--~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~~~~~~~l~~ 297 (415)
T cd01297 239 ETGR-P--VHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAGSEDDVRRIMA 297 (415)
T ss_pred HhCC-C--EEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCcHHHHHHHHc
Confidence 3454 2 3444543 22 23566778888888888854444444432 344444444
No 266
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=24.53 E-value=5.1e+02 Score=23.16 Aligned_cols=39 Identities=15% Similarity=-0.015 Sum_probs=22.7
Q ss_pred HHHHHHHHcCcccEEEcCcc-cHHHHHHHhhcCCeeEEee
Q 025658 141 GELKKLVEEGKIKYIGLSEA-SASTIRRAHAVHPITAVQL 179 (249)
Q Consensus 141 ~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 179 (249)
.....+++.=.+--+++..+ +++..+++++....+.+.+
T Consensus 295 ~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~ 334 (382)
T cd02931 295 PYCKALKEVVDVPVIMAGRMEDPELASEAINEGIADMISL 334 (382)
T ss_pred HHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeee
Confidence 33344454434556666655 6677777777665555543
No 267
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=24.37 E-value=1.7e+02 Score=25.70 Aligned_cols=60 Identities=17% Similarity=0.091 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeec-CCCC--------CCHHHHH-HHHHHHHHcCcccEEEcCcccH
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQHR-IDTR--------VPIEVTI-GELKKLVEEGKIKYIGLSEASA 162 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~lh~-~~~~--------~~~~~~~-~~l~~l~~~G~ir~iGvs~~~~ 162 (249)
.+.+.+++.++..+ +++.+++.++.+.- |+.. .+.++.+ .+.+.|.+.|. ..+++|||..
T Consensus 162 qt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 162 DNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 45666666665543 47777777766643 1110 0112222 34555666675 4677777654
No 268
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=24.37 E-value=3e+02 Score=20.32 Aligned_cols=63 Identities=5% Similarity=-0.125 Sum_probs=41.9
Q ss_pred CCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCCC---ccceEEeecCCCC-CCHHHHHHHHHHHHHc
Q 025658 78 MRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDID---CIDLYYQHRIDTR-VPIEVTIGELKKLVEE 149 (249)
Q Consensus 78 ~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~~---~lDl~~lh~~~~~-~~~~~~~~~l~~l~~~ 149 (249)
+|=-+.|+-|++. ......+++-+.++.+.+..+ -.|++++-.+... .+..+..+.|+.+.+.
T Consensus 48 ~R~G~~VsKKvG~---------AV~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGN---------AVIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccc---------hhHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 4445777778762 356777888888888776532 4699999887653 3566666666665543
No 269
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=24.32 E-value=2.4e+02 Score=25.57 Aligned_cols=74 Identities=12% Similarity=0.030 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcCcccEEEcCcccHHHHHHHhhcCCeeEEeeccCccCcCchhhHHHHHHHcCCeEEEcccCccc
Q 025658 139 TIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRG 212 (249)
Q Consensus 139 ~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G 212 (249)
.-+.+..|.++|.--..|+.+-+-...+.+....-..+.+-+|+.+.........+..++.++.|.+--||+.+
T Consensus 279 ~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~ 352 (402)
T PRK09536 279 AARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAAR 352 (402)
T ss_pred HHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCC
Confidence 45788899999999999999877666666555544456677888888765558888888999999988888653
No 270
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=24.02 E-value=4.9e+02 Score=22.72 Aligned_cols=18 Identities=11% Similarity=0.086 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCCEEeC
Q 025658 40 MIALIHHAINSGITLLDT 57 (249)
Q Consensus 40 ~~~~l~~A~~~Gi~~~Dt 57 (249)
..++.++|.++|+..|+.
T Consensus 151 ~~~aA~ra~~aGfDgVei 168 (338)
T cd04733 151 FAHAARLAQEAGFDGVQI 168 (338)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 344455777889999985
No 271
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=23.98 E-value=5.2e+02 Score=23.06 Aligned_cols=98 Identities=16% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCc-ccEEEcCcccHHHHHHHhhcCCeeEEeeccCccC
Q 025658 107 RAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGK-IKYIGLSEASASTIRRAHAVHPITAVQLEWSLWS 185 (249)
Q Consensus 107 ~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~ 185 (249)
+..+-+.|.++|+++|++- ....-++.++.++.+.+.|. .+.++.+....+.++.+.+. .++.+.+-+...+
T Consensus 28 k~~ia~~L~~~GV~~IE~G------~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~-g~~~i~i~~~~Sd 100 (378)
T PRK11858 28 KLAIARMLDEIGVDQIEAG------FPAVSEDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDC-GVDAVHIFIATSD 100 (378)
T ss_pred HHHHHHHHHHhCCCEEEEe------CCCcChHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhC-CcCEEEEEEcCCH
Q ss_pred c--------------CchhhHHHHHHHcCCeEEEcccCcc
Q 025658 186 R--------------DVEAEIVPTCRELGIGIVAYSPLGR 211 (249)
Q Consensus 186 ~--------------~~~~~~~~~~~~~gi~v~a~spl~~ 211 (249)
. ..-.+.+++++++|..|....+-+.
T Consensus 101 ~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~ 140 (378)
T PRK11858 101 IHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDAS 140 (378)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCC
No 272
>PRK09358 adenosine deaminase; Provisional
Probab=23.98 E-value=4.8e+02 Score=22.62 Aligned_cols=99 Identities=11% Similarity=-0.006 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcc-cHHHHHHHhhcCCeeEEeecc
Q 025658 103 PAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEA-SASTIRRAHAVHPITAVQLEW 181 (249)
Q Consensus 103 ~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~ 181 (249)
.+...+.++..++...-+.+--+-++.+....+.+...+.++.+++.|.--.+=++.. +++.+..++....++-+---+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~lg~~ri~Hg~ 227 (340)
T PRK09358 148 EEAAARELEALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDELGAERIGHGV 227 (340)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHcCCcccchhh
Confidence 4445555666555422122222223333333445556677778888887655555543 234444444421222211111
Q ss_pred CccCcCchhhHHHHHHHcCCeEE
Q 025658 182 SLWSRDVEAEIVPTCRELGIGIV 204 (249)
Q Consensus 182 n~~~~~~~~~~~~~~~~~gi~v~ 204 (249)
.+.. ..++++..+++||.+.
T Consensus 228 ~l~~---~~~~~~~l~~~gi~v~ 247 (340)
T PRK09358 228 RAIE---DPALMARLADRRIPLE 247 (340)
T ss_pred hhcc---CHHHHHHHHHcCCeEE
Confidence 1111 2367888888888764
No 273
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=23.89 E-value=70 Score=17.42 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCCCEEeCc
Q 025658 41 IALIHHAINSGITLLDTS 58 (249)
Q Consensus 41 ~~~l~~A~~~Gi~~~DtA 58 (249)
.+.++.++++|+..|-|-
T Consensus 10 ~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHHcCCCEeeCC
Confidence 457899999999988763
No 274
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=23.81 E-value=2.3e+02 Score=23.52 Aligned_cols=53 Identities=11% Similarity=0.140 Sum_probs=31.6
Q ss_pred cHHHHHHHhhcCCeeEEeeccCc-------cCcCchhhHHHHHHHcCCeEEEcccCcccc
Q 025658 161 SASTIRRAHAVHPITAVQLEWSL-------WSRDVEAEIVPTCRELGIGIVAYSPLGRGF 213 (249)
Q Consensus 161 ~~~~l~~~~~~~~~~~~q~~~n~-------~~~~~~~~~~~~~~~~gi~v~a~spl~~G~ 213 (249)
+.++..+.++...++.+++..+. ........+.+.++++|+.+.++.|...+.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~ 73 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGY 73 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCc
Confidence 34444444454556677663221 111123478889999999999988865443
No 275
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=23.56 E-value=4.8e+02 Score=22.44 Aligned_cols=99 Identities=12% Similarity=0.022 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcc-cHHHHHHHhhcCCeeEEeec
Q 025658 102 DPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEA-SASTIRRAHAVHPITAVQLE 180 (249)
Q Consensus 102 ~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~ 180 (249)
+++.+++.++..++ .+-+.+.-+-++..+...+.+.....++.+++.|+--.+=++.. +.+.+..++.....+.+-.-
T Consensus 138 ~~~~~~~~~~~~~~-~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~ri~Hg 216 (324)
T TIGR01430 138 QPEAAEETLELAKP-YKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGATRIGHG 216 (324)
T ss_pred CHHHHHHHHHHHHh-hccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchhcchh
Confidence 45677777776664 22122222233433333445566677777788777665555543 23344444322111211111
Q ss_pred cCccCcCchhhHHHHHHHcCCeEE
Q 025658 181 WSLWSRDVEAEIVPTCRELGIGIV 204 (249)
Q Consensus 181 ~n~~~~~~~~~~~~~~~~~gi~v~ 204 (249)
+++.. ..+.++.++++|+.+.
T Consensus 217 ~~l~~---~~~~i~~l~~~gi~v~ 237 (324)
T TIGR01430 217 VRALE---DPELLKRLAQENITLE 237 (324)
T ss_pred hhhcc---CHHHHHHHHHcCceEE
Confidence 11111 2367888888887764
No 276
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=23.28 E-value=2.9e+02 Score=19.90 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=41.1
Q ss_pred CCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCC---CccceEEeecCCCC-CCHHHHHHHHHHHHHc
Q 025658 78 MRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDI---DCIDLYYQHRIDTR-VPIEVTIGELKKLVEE 149 (249)
Q Consensus 78 ~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~---~~lDl~~lh~~~~~-~~~~~~~~~l~~l~~~ 149 (249)
+|=-+.|+-|++. ......+++.+.+.++.... ...|++++-.+... .+..+.-+.|..|.+.
T Consensus 38 ~R~GisVsKKvgk---------AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 38 FRVGISVSKKVGN---------AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred cEEEEEEecccCc---------hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 3444666666652 35677888888888876532 35799999888644 4566666666666544
No 277
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=23.28 E-value=2.8e+02 Score=20.37 Aligned_cols=63 Identities=16% Similarity=0.086 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHh
Q 025658 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAH 169 (249)
Q Consensus 100 ~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 169 (249)
+.+.+.+.+.+++.|++.+.+.-++-.+-.++...+-....+..+++ . +-+-.|++++|....
T Consensus 11 ~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l----~---~~~~~~~~eeL~~~~ 73 (121)
T PF01890_consen 11 GAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEEL----G---IPLRFFSAEELNAVE 73 (121)
T ss_dssp S--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHC----T---SEEEEE-HHHHHCHH
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHh----C---CCeEEECHHHHhcCC
Confidence 46889999999999999999888888888887766444333333332 2 444456777777654
No 278
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=23.27 E-value=87 Score=28.14 Aligned_cols=69 Identities=13% Similarity=0.142 Sum_probs=41.6
Q ss_pred hHHHHHHHHhcCCCCCCeEEEeecCcccC------CCCCcCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCC
Q 025658 65 TNEILLGKALKGGMRERVELATKFGISFA------DGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR 133 (249)
Q Consensus 65 ~se~~lg~~l~~~~r~~~~i~tK~~~~~~------~~~~~~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~ 133 (249)
.++..+.+.+++....=+||-||+-.... +........-+.|++.+.+.|++-|+....+|++-+.+..
T Consensus 128 ~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~ 202 (376)
T PF05049_consen 128 ENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLS 202 (376)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTT
T ss_pred hhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcc
Confidence 78888999998855555778899875221 0011111223567888888888889999999999987654
No 279
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=23.19 E-value=2e+02 Score=23.62 Aligned_cols=80 Identities=18% Similarity=0.093 Sum_probs=48.5
Q ss_pred ccCcceecccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEeCcCCcCCC-hHHHHHHHHhcCCCCCCeEEEeecCcccCC
Q 025658 16 EVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPH-TNEILLGKALKGGMRERVELATKFGISFAD 94 (249)
Q Consensus 16 ~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g-~se~~lg~~l~~~~r~~~~i~tK~~~~~~~ 94 (249)
..+.||||+..+ +.+.-+.+++.++.+=...+.|.-. .++.++-+++....-+.++|--|.-
T Consensus 130 ~~~~ig~GG~HY------------apr~t~~~l~~~~~~GHi~~ky~l~~l~~~~l~~a~~~s~~~~a~id~K~l----- 192 (213)
T PF04414_consen 130 CPVAIGFGGGHY------------APRFTKLALETEYAFGHIIPKYALDELDEDVLRQAIEKSGADVAIIDWKSL----- 192 (213)
T ss_dssp -EEEEEE-S-TT-------------HHHHHHHHHCSEEEEEEE-GGGGGG--HHHHHHHHCHCT-SEEEEETTTS-----
T ss_pred cceeEEecCccc------------chhhhhhhhcCCeEEEeeccCcchhhcCHHHHHHHHHhCCCcEEEEecCCC-----
Confidence 377889998654 3345666778888777778888311 4678888888774223344444432
Q ss_pred CCCcCCCCHHHHHHHHHHHHHHcCCC
Q 025658 95 GKREIRGDPAYVRAACEASLKRLDID 120 (249)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~sL~rLg~~ 120 (249)
....++.+.+.++.+|++
T Consensus 193 --------~~~~r~~i~~~l~~~gi~ 210 (213)
T PF04414_consen 193 --------KSEDRRRIEELLEELGIE 210 (213)
T ss_dssp ---------HHHHHHHHHHHHHHT-E
T ss_pred --------CHHHHHHHHHHHHHcCCe
Confidence 455788889999999864
No 280
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=23.18 E-value=2e+02 Score=25.94 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=12.1
Q ss_pred HHHHHHHcCcccEEEcCcccH
Q 025658 142 ELKKLVEEGKIKYIGLSEASA 162 (249)
Q Consensus 142 ~l~~l~~~G~ir~iGvs~~~~ 162 (249)
+.+.|.+.|.. .+++|||..
T Consensus 236 ~~~~L~~~Gy~-~yeisnfa~ 255 (400)
T PRK07379 236 AQEILTQAGYE-HYEISNYAK 255 (400)
T ss_pred HHHHHHHcCCc-eeeeeheEC
Confidence 45556666653 467777664
No 281
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=23.01 E-value=6.2e+02 Score=23.57 Aligned_cols=150 Identities=12% Similarity=0.082 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcCCCh-HHHHHHHHhcC-CCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHH
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYGPHT-NEILLGKALKG-GMRERVELATKFGISFADGKREIRGDPAYVRAACEAS 113 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~-se~~lg~~l~~-~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~s 113 (249)
+++-....++.|.+.|+..|=...+--.=. .+..+ ++.++ ...-++.|+.... +.++.+.+.+.+++
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai-~~ak~~G~~~~~~i~yt~s---------p~~t~~y~~~~a~~- 171 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQAL-RAVKKTGKEAQLCIAYTTS---------PVHTLNYYLSLVKE- 171 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHH-HHHHHcCCEEEEEEEEEeC---------CcCcHHHHHHHHHH-
Confidence 345577789999999998887666554212 33333 33333 2111233333332 23566777776665
Q ss_pred HHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHH-----HHHHhhcCCeeEEeeccCccCcC-
Q 025658 114 LKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASAST-----IRRAHAVHPITAVQLEWSLWSRD- 187 (249)
Q Consensus 114 L~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~-----l~~~~~~~~~~~~q~~~n~~~~~- 187 (249)
+..+|. |.+.|-..--...-.++.+.+..+++... .-||+-.++... ...+++. ..+.+....+.+-.+
T Consensus 172 l~~~Ga---d~I~IkDtaG~l~P~~v~~Lv~alk~~~~-~pi~~H~Hnt~GlA~An~laAieA-Gad~vD~ai~g~g~ga 246 (468)
T PRK12581 172 LVEMGA---DSICIKDMAGILTPKAAKELVSGIKAMTN-LPLIVHTHATSGISQMTYLAAVEA-GADRIDTALSPFSEGT 246 (468)
T ss_pred HHHcCC---CEEEECCCCCCcCHHHHHHHHHHHHhccC-CeEEEEeCCCCccHHHHHHHHHHc-CCCEEEeeccccCCCc
Confidence 456785 44555444333333445555555555433 346776655332 2333332 244555544444332
Q ss_pred ---chhhHHHHHHHcCC
Q 025658 188 ---VEAEIVPTCRELGI 201 (249)
Q Consensus 188 ---~~~~~~~~~~~~gi 201 (249)
+-..++..++..|.
T Consensus 247 gN~~tE~lv~~L~~~g~ 263 (468)
T PRK12581 247 SQPATESMYLALKEAGY 263 (468)
T ss_pred CChhHHHHHHHHHhcCC
Confidence 12255556665543
No 282
>KOG4518 consensus Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=23.01 E-value=4.3e+02 Score=21.70 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCC------CCCcCCCCHHHHHHHHHHH
Q 025658 40 MIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFAD------GKREIRGDPAYVRAACEAS 113 (249)
Q Consensus 40 ~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~------~~~~~~~~~~~i~~~~~~s 113 (249)
..+-+..|-++|++.++.+.-|+- .+|. +.++-.+ -....|-.-..+.. +..+...+...+++++++.
T Consensus 18 l~~r~~~a~~~gf~~vev~~p~~e-~a~~-~~~~~~~----~~~~~~~~~a~~~~~d~~~~G~~svpg~~k~FR~~Ld~a 91 (264)
T KOG4518|consen 18 LLQRYGAAASAGFKLVEVSIPYTE-PAEK-LREAADE----YHLKHTLINAPPGNWDDGFRGLASVPGAKKEFRKSLDTA 91 (264)
T ss_pred HHHHHHHHHhCCceEEEecCCCCC-hHHH-HHHhhhc----chhhhhhccCCCCChhhhccCcccCCchHHHHHHHHHHH
Confidence 455678899999999999988871 2333 2332222 11222211111111 1122344567788888877
Q ss_pred H---HHcCCCccceEE
Q 025658 114 L---KRLDIDCIDLYY 126 (249)
Q Consensus 114 L---~rLg~~~lDl~~ 126 (249)
. +.||+.+|.++-
T Consensus 92 i~yAkalgC~rIHlmA 107 (264)
T KOG4518|consen 92 IEYAKALGCCRIHLMA 107 (264)
T ss_pred HHHHHHhCCceEEEec
Confidence 6 678988877653
No 283
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=22.96 E-value=4.3e+02 Score=21.72 Aligned_cols=92 Identities=18% Similarity=0.251 Sum_probs=54.0
Q ss_pred CCcccCcceecccccCCCC------------------CCCCCHHHHHHHHHHHHhcCCCEEe-CcCCcCCChHHHHHHHH
Q 025658 13 QGLEVSAQGLGCMGMSAFY------------------GPPKPESDMIALIHHAINSGITLLD-TSDIYGPHTNEILLGKA 73 (249)
Q Consensus 13 ~g~~vs~lglG~~~~g~~~------------------~~~~~~~~~~~~l~~A~~~Gi~~~D-tA~~Yg~g~se~~lg~~ 73 (249)
.|+.+|-+-+|-+..=-.+ -...+++|+..+-..+-++|+.++- +|+.-- .|++ +.
T Consensus 92 ~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTt---deRm--el 166 (268)
T KOG4175|consen 92 QGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTT---DERM--EL 166 (268)
T ss_pred cCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCCh---HHHH--HH
Confidence 4677888777765321001 1234567777777777788887775 344443 5543 34
Q ss_pred hcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcC
Q 025658 74 LKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLD 118 (249)
Q Consensus 74 l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg 118 (249)
|......=+++.+..+.. .+.+.+.+.+.+.|+|..
T Consensus 167 l~~~adsFiYvVSrmG~T---------G~~~svn~~l~~L~qrvr 202 (268)
T KOG4175|consen 167 LVEAADSFIYVVSRMGVT---------GTRESVNEKLQSLLQRVR 202 (268)
T ss_pred HHHhhcceEEEEEecccc---------ccHHHHHHHHHHHHHHHH
Confidence 444344457788887743 355566666666666653
No 284
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.96 E-value=5.1e+02 Score=22.86 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHH
Q 025658 34 PKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILL 70 (249)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~l 70 (249)
..+.++.+++++.|-+.||+.|=-=+.-| +++.++
T Consensus 82 ~YT~~di~eiv~yA~~rgI~VIPEID~PG--H~~a~l 116 (357)
T cd06563 82 FYTQEEIREIVAYAAERGITVIPEIDMPG--HALAAL 116 (357)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEecCCch--hHHHHH
Confidence 35789999999999999999885433333 676654
No 285
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=22.94 E-value=6e+02 Score=23.35 Aligned_cols=82 Identities=10% Similarity=0.002 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCC-CCHHHHHHHHHHHHHcCcccEEEcCccc---HHHHHHHhhcCCee
Q 025658 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR-VPIEVTIGELKKLVEEGKIKYIGLSEAS---ASTIRRAHAVHPIT 175 (249)
Q Consensus 100 ~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvs~~~---~~~l~~~~~~~~~~ 175 (249)
..+++.+.+.+++..+.+. .++.+-+-.|.+. ...+.+++.+..++++..=..+.+++.. ++.++++.+.. ++
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~g-vd 135 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLG-VG 135 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCC-CC
Confidence 4688888888888877663 3455666665333 3345578888888887211245666533 66777776542 45
Q ss_pred EEeeccCcc
Q 025658 176 AVQLEWSLW 184 (249)
Q Consensus 176 ~~q~~~n~~ 184 (249)
.+.+.++-.
T Consensus 136 ~V~islka~ 144 (442)
T TIGR01290 136 HVTITINAI 144 (442)
T ss_pred eEEEeccCC
Confidence 555555543
No 286
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=22.83 E-value=5.8e+02 Score=23.17 Aligned_cols=20 Identities=5% Similarity=0.076 Sum_probs=10.7
Q ss_pred hHHHHHHHcCCeEEEcccCc
Q 025658 191 EIVPTCRELGIGIVAYSPLG 210 (249)
Q Consensus 191 ~~~~~~~~~gi~v~a~spl~ 210 (249)
.+++++++.|+.-+.-.|+.
T Consensus 187 ~ti~~L~~lg~~~V~L~~y~ 206 (404)
T TIGR03278 187 KTCADLESWGAKALILMRFA 206 (404)
T ss_pred HHHHHHHHCCCCEEEEEecc
Confidence 45666666665544444443
No 287
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=22.64 E-value=5.8e+02 Score=23.09 Aligned_cols=96 Identities=11% Similarity=0.090 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcC--cccEEEcC--cccHHHHHHHhhcCCeeE
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEG--KIKYIGLS--EASASTIRRAHAVHPITA 176 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvs--~~~~~~l~~~~~~~~~~~ 176 (249)
.+++...+-+...++. .++.++-.|-...+ |+.+.+|.++- .+.-+|=- .+++..+.++++....++
T Consensus 261 ~t~~eai~~~~~l~e~-----~~i~~iEdPl~~~D----~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~ 331 (408)
T cd03313 261 LTSEELIDYYKELVKK-----YPIVSIEDPFDEDD----WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANA 331 (408)
T ss_pred cCHHHHHHHHHHHHHh-----CCcEEEEeCCCCcC----HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 3445444444444444 35677877755443 56666666663 44433322 247899999998888899
Q ss_pred EeeccCccCc-CchhhHHHHHHHcCCeEEE
Q 025658 177 VQLEWSLWSR-DVEAEIVPTCRELGIGIVA 205 (249)
Q Consensus 177 ~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a 205 (249)
+|+..+-+-- ....++...|+++|+.++.
T Consensus 332 v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 332 LLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred EEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 9988876432 2234788999999999864
No 288
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=22.52 E-value=4.6e+02 Score=21.86 Aligned_cols=25 Identities=8% Similarity=0.173 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCC
Q 025658 36 PESDMIALIHHAINSGITLLDTSDI 60 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~ 60 (249)
.+|.....++.|++.|+..|++-=.
T Consensus 18 ~pENTl~Af~~A~~~Gad~iE~DV~ 42 (265)
T cd08564 18 YPENTLPSFRRALEIGVDGVELDVF 42 (265)
T ss_pred CCchhHHHHHHHHHcCCCEEEEeeE
Confidence 3477999999999999999887443
No 289
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=22.51 E-value=1e+02 Score=16.79 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhcCCC
Q 025658 38 SDMIALIHHAINSGIT 53 (249)
Q Consensus 38 ~~~~~~l~~A~~~Gi~ 53 (249)
++-..++..|.+.|++
T Consensus 3 ~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 3 EEWVELIKEAKESGLS 18 (30)
T ss_dssp HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcCCC
Confidence 4678899999999975
No 290
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=22.45 E-value=5.7e+02 Score=22.90 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCcccEEEcCcccHHHHHHHhhc
Q 025658 139 TIGELKKLVEEGKIKYIGLSEASASTIRRAHAV 171 (249)
Q Consensus 139 ~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 171 (249)
..+..+.|+++|.+-++|=|+-+.++..++.+.
T Consensus 179 ~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~ 211 (380)
T TIGR00221 179 HFELIRHLKDAGIIVSAGHTNATYELAKAAFKA 211 (380)
T ss_pred hHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHc
Confidence 567788999999999999999999999988765
No 291
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=22.39 E-value=3e+02 Score=23.36 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=14.3
Q ss_pred HHHHHHhcCCCEEeCcCCc
Q 025658 43 LIHHAINSGITLLDTSDIY 61 (249)
Q Consensus 43 ~l~~A~~~Gi~~~DtA~~Y 61 (249)
-+...++.|||+||---+|
T Consensus 46 sI~~QL~~GvR~LdLdv~~ 64 (267)
T cd08590 46 SITDQLDLGARFLELDVHW 64 (267)
T ss_pred CHHHHHhhCCcEEEEeeee
Confidence 3667889999999954443
No 292
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=22.36 E-value=5.4e+02 Score=22.62 Aligned_cols=151 Identities=10% Similarity=0.031 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcCCcCCC-hHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHH
Q 025658 36 PESDMIALIHHAINSGITLLDTSDIYGPH-TNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASL 114 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g-~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL 114 (249)
++++..+-+..+++.|++.|=.-- |.. ......=+++++.-.+++.|..=.. ..++.+...+ +-+.|
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikv--g~~~~~d~~~v~~vRe~~G~~~~l~vDaN---------~~~~~~~A~~-~~~~l 205 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKI--GRDPRRDPDRVAAARRAIGPDAELFVDAN---------GAYSRKQALA-LARAF 205 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeec--CCCHHHHHHHHHHHHHHcCCCCeEEEECC---------CCCCHHHHHH-HHHHH
Confidence 345566666777889998875321 111 1122223444542222333322111 1234443222 22333
Q ss_pred HHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHc--Ccc-cEEEcCcccHHHHHHHhhcCCeeEEeeccCccCc-Cchh
Q 025658 115 KRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEE--GKI-KYIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEA 190 (249)
Q Consensus 115 ~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~ 190 (249)
+.+ ++.++-.|-+ .+.++.+.+|+++ -.| -+.|=|.++...+.++++...++++|....-+-- ....
T Consensus 206 ~~~-----~~~~~EeP~~----~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~~ 276 (352)
T cd03328 206 ADE-----GVTWFEEPVS----SDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFL 276 (352)
T ss_pred HHh-----CcchhhCCCC----hhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHHH
Confidence 333 4444444432 2357778888887 333 3667777899999999998889999998775431 2244
Q ss_pred hHHHHHHHcCCeEEEcc
Q 025658 191 EIVPTCRELGIGIVAYS 207 (249)
Q Consensus 191 ~~~~~~~~~gi~v~a~s 207 (249)
.+.+.|+.+|+.++.+.
T Consensus 277 ~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 277 QAAALAAAHHVDLSAHC 293 (352)
T ss_pred HHHHHHHHcCCeeccCc
Confidence 89999999999999874
No 293
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=22.32 E-value=3.4e+02 Score=23.01 Aligned_cols=94 Identities=13% Similarity=0.079 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCCccceEEeecCCC---CCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhcCCeeEEeeccC
Q 025658 106 VRAACEASLKRLDIDCIDLYYQHRIDT---RVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWS 182 (249)
Q Consensus 106 i~~~~~~sL~rLg~~~lDl~~lh~~~~---~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n 182 (249)
-+..+-+.|.++|+++|++=..-.|.. ..+.++....+.. ...++..++. .+...++.+++.. ++.+.+..+
T Consensus 21 ~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~---~~~~~~~~~~-~~~~dv~~A~~~g-~~~i~i~~~ 95 (274)
T cd07938 21 DKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR---RPGVRYSALV-PNLRGAERALAAG-VDEVAVFVS 95 (274)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc---CCCCEEEEEC-CCHHHHHHHHHcC-cCEEEEEEe
Confidence 344566679999999988874433321 1233344444433 2346666665 4667788887653 233333222
Q ss_pred ccC--------cC------chhhHHHHHHHcCCeEE
Q 025658 183 LWS--------RD------VEAEIVPTCRELGIGIV 204 (249)
Q Consensus 183 ~~~--------~~------~~~~~~~~~~~~gi~v~ 204 (249)
..+ .. ...+.+++++++|+.+.
T Consensus 96 ~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~ 131 (274)
T cd07938 96 ASETFSQKNINCSIAESLERFEPVAELAKAAGLRVR 131 (274)
T ss_pred cCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 211 11 11267889999999886
No 294
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=22.30 E-value=1.7e+02 Score=21.88 Aligned_cols=51 Identities=10% Similarity=0.133 Sum_probs=34.2
Q ss_pred HHHHHHHHHHcCCCccceEEeecCCCCC-CHHHHHHHHHHHHHcCcccEEEc
Q 025658 107 RAACEASLKRLDIDCIDLYYQHRIDTRV-PIEVTIGELKKLVEEGKIKYIGL 157 (249)
Q Consensus 107 ~~~~~~sL~rLg~~~lDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGv 157 (249)
+..+++.|+.+....+|.++++..+... ...+....++.|.+.-.|+-+-+
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~~gv~l~~~ 105 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPKKGVRFIAI 105 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhhcCcEEEEe
Confidence 3456667777766789999999887653 45667777777777634444433
No 295
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=22.20 E-value=41 Score=31.04 Aligned_cols=53 Identities=19% Similarity=0.363 Sum_probs=32.2
Q ss_pred CcccEEEcCcccHHHHHHHhhcC-CeeEEeeccCccCcCchhhHHHHHHHcCCe
Q 025658 150 GKIKYIGLSEASASTIRRAHAVH-PITAVQLEWSLWSRDVEAEIVPTCRELGIG 202 (249)
Q Consensus 150 G~ir~iGvs~~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 202 (249)
+.++.+|+..++.+.+.++.... .-+.++.+..++-.-.+.++++.+++.||.
T Consensus 264 ~~Ar~fG~ll~d~d~i~eaa~~~~~~~~y~~~~~~~ldp~dp~v~~~A~~~gi~ 317 (492)
T TIGR01660 264 GRIRYLGVLLYDADKIEEAASTENEKDLYHRQLDVFLDPNDPEVIAQAKKDGIP 317 (492)
T ss_pred hhhhhhhhhccCcHHHHHHHhcccchhHHHHhhceecCCCCHHHHHHHHHcCCC
Confidence 45788888888888887776652 224444444544332344666666666655
No 296
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=22.20 E-value=2.6e+02 Score=20.97 Aligned_cols=54 Identities=22% Similarity=0.149 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCc
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSE 159 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 159 (249)
.+.+.+...+++..+. .-+.-.+=..|...+.....+.|..+++.| +..|++.+
T Consensus 81 v~~~~L~~~L~~~~~~----~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG-~~~v~l~t 134 (141)
T PRK11267 81 VTDETMITALDALTEG----KKDTTIFFRADKTVDYETLMKVMDTLHQAG-YLKIGLVG 134 (141)
T ss_pred ccHHHHHHHHHHHHhc----CCCceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEe
Confidence 4555555555544332 223334445577788999999999999999 45677754
No 297
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=22.13 E-value=2e+02 Score=22.66 Aligned_cols=43 Identities=12% Similarity=0.261 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEeCcCCc--CCChHHHHHHHHhcC
Q 025658 34 PKPESDMIALIHHAINSGITLLDTSDIY--GPHTNEILLGKALKG 76 (249)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Y--g~g~se~~lg~~l~~ 76 (249)
+.++++.++.++...+.|+..+=.+-.+ -+...|+.+.+.+++
T Consensus 130 ~ld~~~v~~~~~~l~~~gv~avAV~~~fS~~np~hE~~v~eii~e 174 (176)
T PF05378_consen 130 PLDEDEVREALRELKDKGVEAVAVSLLFSYRNPEHEQRVAEIIRE 174 (176)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEECccCCCCHHHHHHHHHHHHh
Confidence 4567777777877777787777665543 345677777777654
No 298
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=22.13 E-value=72 Score=21.89 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=29.6
Q ss_pred hhHHHHHHHcCCeEEEcccCccccCCCCCCCCCCCChhhH
Q 025658 190 AEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDF 229 (249)
Q Consensus 190 ~~~~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~ 229 (249)
..+++.++++||.++-..+|+.-+. ..+..+.+|+.-+
T Consensus 30 ~~I~~~A~e~~VPi~~~~~LAr~L~--~~~ig~~IP~~ly 67 (82)
T TIGR00789 30 ERIIEIAKKHGIPIVEDPDLVDVLL--KLDLDDEIPEELY 67 (82)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHH--hCCCCCccCHHHH
Confidence 3799999999999999999999886 3445555665433
No 299
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.00 E-value=80 Score=26.55 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCC
Q 025658 30 FYGPPKPESDMIALIHHAINSGI 52 (249)
Q Consensus 30 ~~~~~~~~~~~~~~l~~A~~~Gi 52 (249)
.|.+..+++++.+++..|+++|+
T Consensus 178 r~k~dlt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 178 RWKPDLTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred hcCcccCHHHHHHHHHHHHHhhh
Confidence 37777899999999999999996
No 300
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=21.91 E-value=4.7e+02 Score=21.78 Aligned_cols=85 Identities=20% Similarity=0.128 Sum_probs=56.1
Q ss_pred cceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhcCCeeEEeeccCccCc-CchhhHHHHHHHcC
Q 025658 122 IDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELG 200 (249)
Q Consensus 122 lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~g 200 (249)
.++.++-.|-+ .+.++.+.++. .+.=-+.|=|-++...+.++++...++++|+.....-- .....+.+.|+++|
T Consensus 153 ~~i~~iEqP~~----~~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~g 227 (263)
T cd03320 153 GRIEYIEQPLP----PDDLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARG 227 (263)
T ss_pred cCCceEECCCC----hHHHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcC
Confidence 34555555533 23566666666 33334666666777788888887788999988765431 22348899999999
Q ss_pred CeEEEcccCcc
Q 025658 201 IGIVAYSPLGR 211 (249)
Q Consensus 201 i~v~a~spl~~ 211 (249)
+.++..+-+..
T Consensus 228 i~~~~~~~~es 238 (263)
T cd03320 228 IPAVVSSALES 238 (263)
T ss_pred CCEEEEcchhh
Confidence 99987654433
No 301
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=21.91 E-value=5.5e+02 Score=22.53 Aligned_cols=21 Identities=10% Similarity=0.135 Sum_probs=16.5
Q ss_pred hhhHHHHHHHcCCeEEEcccC
Q 025658 189 EAEIVPTCRELGIGIVAYSPL 209 (249)
Q Consensus 189 ~~~~~~~~~~~gi~v~a~spl 209 (249)
+..++.+|.+++|+|+.=+.-
T Consensus 174 e~Sil~~Ay~~~VPIf~Pa~~ 194 (316)
T PRK02301 174 DSGILAAAYECDVPVYCPAIQ 194 (316)
T ss_pred CCcHHHHHHHcCCCEECCCcc
Confidence 469999999999998754433
No 302
>PRK08084 DNA replication initiation factor; Provisional
Probab=21.89 E-value=2.4e+02 Score=23.11 Aligned_cols=44 Identities=9% Similarity=0.199 Sum_probs=32.8
Q ss_pred cceEEeecCCCCCC----HHHHHHHHHHHHHcCcccEEEcCcccHHHH
Q 025658 122 IDLYYQHRIDTRVP----IEVTIGELKKLVEEGKIKYIGLSEASASTI 165 (249)
Q Consensus 122 lDl~~lh~~~~~~~----~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 165 (249)
.|++++...+.... .++.++.+..+++.|+++-|+.|+..+..+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 58899877654321 234578888999999999999999777663
No 303
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=21.88 E-value=4e+02 Score=20.97 Aligned_cols=98 Identities=11% Similarity=0.037 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccE-EEcCcccHHHHHHHhhcCCeeEEee
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKY-IGLSEASASTIRRAHAVHPITAVQL 179 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~-iGvs~~~~~~l~~~~~~~~~~~~q~ 179 (249)
.+...+.+.++. +.+.|.+++.+-....+... .....++.++++++...+.- +.+-..+.+...+.+.....+.+|+
T Consensus 8 ~~~~~~~~~~~~-~~~~g~d~i~~~~~Dg~~~~-~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~v 85 (210)
T TIGR01163 8 ADFARLGEEVKA-VEEAGADWIHVDVMDGHFVP-NLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITV 85 (210)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEEcCCCCCCCC-CcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE
Confidence 345555555443 45677777666533333211 11134555666665433222 5555555555444444455677776
Q ss_pred ccCccCcCchhhHHHHHHHcCCe
Q 025658 180 EWSLWSRDVEAEIVPTCRELGIG 202 (249)
Q Consensus 180 ~~n~~~~~~~~~~~~~~~~~gi~ 202 (249)
....-. .....++.+++.|+.
T Consensus 86 h~~~~~--~~~~~~~~~~~~g~~ 106 (210)
T TIGR01163 86 HPEASE--HIHRLLQLIKDLGAK 106 (210)
T ss_pred ccCCch--hHHHHHHHHHHcCCc
Confidence 543321 123555666666654
No 304
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.86 E-value=6.5e+02 Score=23.39 Aligned_cols=83 Identities=19% Similarity=0.140 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCCCEEe--------CcCCcCCC----hHHHHHHHHhcC-CCCCCeEEEeecCcccCCCCCcCCCCHHH
Q 025658 39 DMIALIHHAINSGITLLD--------TSDIYGPH----TNEILLGKALKG-GMRERVELATKFGISFADGKREIRGDPAY 105 (249)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~D--------tA~~Yg~g----~se~~lg~~l~~-~~r~~~~i~tK~~~~~~~~~~~~~~~~~~ 105 (249)
...++++.|+|+|-=-+- |...|.++ ..+++++.++.- ..+..+.-+|.-. .....
T Consensus 183 aMaallreAlEaGalGmS~~~~~~~~tgd~~p~~~l~~~t~el~~la~~va~ag~~iLqst~d~-----------~egaa 251 (579)
T COG3653 183 AMAALLREALEAGALGMSMDAAIDKLTGDRYPSRALPFATWELRRLAISVARAGGRILQSTHDR-----------DEGAA 251 (579)
T ss_pred HHHHHHHHHHhccccccchhhhcccccccccCCcccCcchHHHHHHHHHHHHhcCceeEeeccc-----------cchHH
Confidence 367899999999876666 56666543 244555555532 1344444444332 34566
Q ss_pred HHHHHHHHHHHcCCC-ccceEEeecCCC
Q 025658 106 VRAACEASLKRLDID-CIDLYYQHRIDT 132 (249)
Q Consensus 106 i~~~~~~sL~rLg~~-~lDl~~lh~~~~ 132 (249)
..+.++++-+.-|.. .+-+.+.|..+.
T Consensus 252 ~L~~l~~a~ri~~R~~~vr~v~s~~a~a 279 (579)
T COG3653 252 ALEALLEASRIGNRRKGVRMVMSHSADA 279 (579)
T ss_pred HHHHHHHHHHhcCcccCceEEEeccccc
Confidence 666777777666443 477788887644
No 305
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=21.77 E-value=1.6e+02 Score=23.11 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcC-CCCCCeEEEeecCc
Q 025658 40 MIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG-GMRERVELATKFGI 90 (249)
Q Consensus 40 ~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~-~~r~~~~i~tK~~~ 90 (249)
..-+-....+.|++.....-.- .++..|.++|+. ..+.+++|+| .+.
T Consensus 21 ~~~l~~~L~~~G~~v~~~~~v~---Dd~~~I~~~l~~~~~~~dlVItt-GG~ 68 (170)
T cd00885 21 AAFLAKELAELGIEVYRVTVVG---DDEDRIAEALRRASERADLVITT-GGL 68 (170)
T ss_pred HHHHHHHHHHCCCEEEEEEEeC---CCHHHHHHHHHHHHhCCCEEEEC-CCC
Confidence 4444444557799877654333 366667777765 4567888888 543
No 306
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.59 E-value=5.6e+02 Score=22.55 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=15.6
Q ss_pred CCCHHHHHHHH-------HHHHhcCCCEEeC
Q 025658 34 PKPESDMIALI-------HHAINSGITLLDT 57 (249)
Q Consensus 34 ~~~~~~~~~~l-------~~A~~~Gi~~~Dt 57 (249)
..+.+++.+++ +.|.++|+..||-
T Consensus 133 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVei 163 (353)
T cd04735 133 ELTHEEIEDIIDAFGEATRRAIEAGFDGVEI 163 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 34555544444 4667889999885
No 307
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=21.59 E-value=2.4e+02 Score=20.53 Aligned_cols=20 Identities=25% Similarity=0.584 Sum_probs=13.6
Q ss_pred CchhhHHHHHHHcCCeEEEc
Q 025658 187 DVEAEIVPTCRELGIGIVAY 206 (249)
Q Consensus 187 ~~~~~~~~~~~~~gi~v~a~ 206 (249)
....+++++|.+++++++..
T Consensus 86 ~iP~~~i~~A~~~~lPli~i 105 (123)
T PF07905_consen 86 EIPEEIIELADELGLPLIEI 105 (123)
T ss_pred cCCHHHHHHHHHcCCCEEEe
Confidence 33457778888888777654
No 308
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=21.55 E-value=4.9e+02 Score=21.88 Aligned_cols=145 Identities=10% Similarity=0.061 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCEE---eCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHH
Q 025658 36 PESDMIALIHHAINSGITLL---DTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEA 112 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~---DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 112 (249)
+.++..+.++.+.+.|++.| ++....-.-..++.+....+...+-.+.+....+ ..+.+.++.--+.
T Consensus 63 ~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~g----------~~~~e~l~~Lk~a 132 (296)
T TIGR00433 63 KVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLG----------LLDPEQAKRLKDA 132 (296)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecCC----------CCCHHHHHHHHHc
Q ss_pred HHHH--cCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccE----EEcCcccHHHHHHHhhc-CCeeEEeeccCccC
Q 025658 113 SLKR--LDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKY----IGLSEASASTIRRAHAV-HPITAVQLEWSLWS 185 (249)
Q Consensus 113 sL~r--Lg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~ 185 (249)
-+.. ++.+ .+-=.++......+.++.+++++.+++.|.--. +|+ +.+.+++.+.+.. ....+..+.++.+.
T Consensus 133 G~~~v~i~~E-~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl-~et~~d~~~~~~~l~~l~~~~i~l~~l~ 210 (296)
T TIGR00433 133 GLDYYNHNLD-TSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGL-GETVEDRIGLALALANLPPESVPINFLV 210 (296)
T ss_pred CCCEEEEccc-CCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeC-CCCHHHHHHHHHHHHhCCCCEEEeeeeE
Q ss_pred cCchhhH
Q 025658 186 RDVEAEI 192 (249)
Q Consensus 186 ~~~~~~~ 192 (249)
+.+...+
T Consensus 211 p~~gT~l 217 (296)
T TIGR00433 211 KIKGTPL 217 (296)
T ss_pred EcCCCcc
No 309
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=21.51 E-value=1.4e+02 Score=25.82 Aligned_cols=47 Identities=23% Similarity=0.261 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcc
Q 025658 103 PAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKI 152 (249)
Q Consensus 103 ~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i 152 (249)
.+...+.+++.+++||++ .|.+.-. ........+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~t--t~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRT--TSPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeC--CCHHHHHHHHHHHHHHHHCCCE
Confidence 566778889999999986 5753221 1112345678899999999998
No 310
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=21.41 E-value=7.6e+02 Score=24.46 Aligned_cols=150 Identities=16% Similarity=0.119 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHc
Q 025658 38 SDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRL 117 (249)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rL 117 (249)
+-+.+++++|-+.|++.+- .|. |+--..- .+.+-++-+++.|..... . ..-.|.+ +-+..++-
T Consensus 43 EIaIRvFRa~tEL~~~tvA---iYs----eqD~~sM-HRqKADEaY~iGk~l~PV-~-------AYL~ide-ii~iak~~ 105 (1176)
T KOG0369|consen 43 EIAIRVFRAATELSMRTVA---IYS----EQDRLSM-HRQKADEAYLIGKGLPPV-G-------AYLAIDE-IISIAKKH 105 (1176)
T ss_pred cchhHHHHHHhhhcceEEE---EEe----ccchhhh-hhhccccceecccCCCch-h-------hhhhHHH-HHHHHHHc
Confidence 5588999999999999775 674 2221222 223668889998884221 1 1111222 22233444
Q ss_pred CCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcCcccHHHHH-----HHhhc-CCeeEEeeccCccCcCchhh
Q 025658 118 DIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIR-----RAHAV-HPITAVQLEWSLWSRDVEAE 191 (249)
Q Consensus 118 g~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~-----~~~~~-~~~~~~q~~~n~~~~~~~~~ 191 (249)
+ +|++ | |.+.. +.|--+. .+.+.+--|+.||=|---.+.+- +.+.+ ....++--.-.+.. .-.+
T Consensus 106 ~---vdav--H-PGYGF-LSErsdF-A~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPit--t~~E 175 (1176)
T KOG0369|consen 106 N---VDAV--H-PGYGF-LSERSDF-AQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPIT--TVEE 175 (1176)
T ss_pred C---CCee--c-CCccc-cccchHH-HHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCcc--cHHH
Confidence 4 3443 2 22211 1222222 33444455789998743222211 11111 01001111111111 1238
Q ss_pred HHHHHHHcCCeEEEcccCccccC
Q 025658 192 IVPTCRELGIGIVAYSPLGRGFF 214 (249)
Q Consensus 192 ~~~~~~~~gi~v~a~spl~~G~l 214 (249)
.+++|++.|.+||....+++|--
T Consensus 176 A~eF~k~yG~PvI~KAAyGGGGR 198 (1176)
T KOG0369|consen 176 ALEFVKEYGLPVIIKAAYGGGGR 198 (1176)
T ss_pred HHHHHHhcCCcEEEeecccCCCc
Confidence 99999999999999999988643
No 311
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=21.37 E-value=1.4e+02 Score=25.95 Aligned_cols=50 Identities=20% Similarity=0.119 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCccc
Q 025658 103 PAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIK 153 (249)
Q Consensus 103 ~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir 153 (249)
.+...+.+.+.+++||+. +|....-........+-+.+.+.+|.++|.|-
T Consensus 68 ~~~~~~~~~~~~~~lgi~-~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy 117 (314)
T cd00812 68 TEYNIKKMKEQLKRMGFS-YDWRREFTTCDPEYYKFTQWLFLKLYEKGLAY 117 (314)
T ss_pred HHHHHHHHHHHHHHhccc-eecccccccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 466788899999999985 56321111111122344677888999999983
No 312
>PLN02438 inositol-3-phosphate synthase
Probab=21.35 E-value=6.9e+02 Score=23.50 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHcCCCccceEEeecCCCC----CCHHHHHHHHHHHHHcCc
Q 025658 103 PAYVRAACEASLKRLDIDCIDLYYQHRIDTR----VPIEVTIGELKKLVEEGK 151 (249)
Q Consensus 103 ~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~----~~~~~~~~~l~~l~~~G~ 151 (249)
.+.|++.++.-.++-|+|.+=++...+-+.. .+..++++.|++..+++.
T Consensus 206 ve~ir~DIr~Fk~~n~ld~vVVlwtAsTEr~~~~~~~~~~t~~~l~~ai~~~~ 258 (510)
T PLN02438 206 MDQIRKDIREFKEKNKVDKVVVLWTANTERYSNVVVGLNDTMENLLASIEKDE 258 (510)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcCCCcccCCHHHHHHHHhcCC
Confidence 4566777777777778887666666554432 234578999999888875
No 313
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=21.24 E-value=6e+02 Score=22.78 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=29.7
Q ss_pred CcceecccccCC----CCCCC-CCHHHHHHHHHHHHhcCCCEEeCc
Q 025658 18 SAQGLGCMGMSA----FYGPP-KPESDMIALIHHAINSGITLLDTS 58 (249)
Q Consensus 18 s~lglG~~~~g~----~~~~~-~~~~~~~~~l~~A~~~Gi~~~DtA 58 (249)
.+.+||.|.+|. .||.+ .+.-...+.++++-+.|+..|+..
T Consensus 7 ~~f~~~~w~~~~~~~~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~ 52 (382)
T TIGR02631 7 DRFTFGLWTVGWVGRDPFGDATRTALDPVEAVHKLAELGAYGVTFH 52 (382)
T ss_pred CceEEEeeccCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCEEEec
Confidence 478899998862 24443 233456788999999999999875
No 314
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=21.19 E-value=5.7e+02 Score=22.47 Aligned_cols=106 Identities=16% Similarity=0.166 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccceEEeecC-----CCCCCHHHHHHHHHHHHHc-CcccEEEcCc---ccHHHHHHHh
Q 025658 99 IRGDPAYVRAACEASLKRLDIDCIDLYYQHRI-----DTRVPIEVTIGELKKLVEE-GKIKYIGLSE---ASASTIRRAH 169 (249)
Q Consensus 99 ~~~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~-----~~~~~~~~~~~~l~~l~~~-G~ir~iGvs~---~~~~~l~~~~ 169 (249)
+.++.+.+.+ +-+.|.+.|+++|.+-..... +...+....++.++.+.+. ...+...+.. .+.+.++.+.
T Consensus 20 ~~f~~~~~~~-i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~ 98 (337)
T PRK08195 20 HQYTLEQVRA-IARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAY 98 (337)
T ss_pred CccCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHH
Confidence 3455555554 555688889888888532211 0011111134455555332 3344444332 2456777766
Q ss_pred hcCCeeEEeeccCccCcCchhhHHHHHHHcCCeEEEc
Q 025658 170 AVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 206 (249)
Q Consensus 170 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 206 (249)
+. .++.+-+..+.-......+.+++++++|..+...
T Consensus 99 ~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 99 DA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred Hc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 54 2445444443333233457888888988876654
No 315
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.88 E-value=3.2e+02 Score=22.30 Aligned_cols=53 Identities=11% Similarity=0.069 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHHHHHhcCCCCCCeEEEeecC
Q 025658 35 KPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFG 89 (249)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~lg~~l~~~~r~~~~i~tK~~ 89 (249)
.+.+++.++.++.++.|++.++..-... ...+.+.+.-++.++--+-.-|+..
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~--~~~~~I~~l~~~~p~~~IGAGTVl~ 76 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTP--AALEAIRLIAKEVPEALIGAGTVLN 76 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCc--cHHHHHHHHHHHCCCCEEEEeeccC
Confidence 3678999999999999999999885444 4556665544445543444556654
No 316
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=20.86 E-value=2.1e+02 Score=24.55 Aligned_cols=89 Identities=24% Similarity=0.286 Sum_probs=51.0
Q ss_pred HHHHcCCCccceEEeecCCCCC-CHHHHHHHHHHHHHcCcccEEEcCccc---HHHHHHHhh---c--CCeeEEeeccCc
Q 025658 113 SLKRLDIDCIDLYYQHRIDTRV-PIEVTIGELKKLVEEGKIKYIGLSEAS---ASTIRRAHA---V--HPITAVQLEWSL 183 (249)
Q Consensus 113 sL~rLg~~~lDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvs~~~---~~~l~~~~~---~--~~~~~~q~~~n~ 183 (249)
++++...+..|++.+..|.... ++-+. +...- .+|=|+.-+ ...+.++++ . .+..++-+.||+
T Consensus 155 ~~kk~a~E~~~~~IIDsaaG~gCpVi~s------l~~aD--~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~ 226 (284)
T COG1149 155 ALKKHAKELADLLIIDSAAGTGCPVIAS------LKGAD--LAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNL 226 (284)
T ss_pred HHHHhhhhhcceeEEecCCCCCChHHHh------hccCC--EEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCC
Confidence 3344443447889998874322 22211 11111 234444322 223333333 2 466777888855
Q ss_pred cCcCchhhHHHHHHHcCCeEEEcccCcccc
Q 025658 184 WSRDVEAEIVPTCRELGIGIVAYSPLGRGF 213 (249)
Q Consensus 184 ~~~~~~~~~~~~~~~~gi~v~a~spl~~G~ 213 (249)
.+ . ++-++|++.|+.+++--|+..-.
T Consensus 227 g~---s-~ie~~~~e~gi~il~~IPyd~~i 252 (284)
T COG1149 227 GD---S-EIEEYCEEEGIPILGEIPYDKDI 252 (284)
T ss_pred Cc---h-HHHHHHHHcCCCeeEECCcchhH
Confidence 44 3 89999999999999999986543
No 317
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=20.83 E-value=3.5e+02 Score=19.82 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHHcCC---CccceEEeecCCCC-CCHHHHHHHHHHHHHc
Q 025658 101 GDPAYVRAACEASLKRLDI---DCIDLYYQHRIDTR-VPIEVTIGELKKLVEE 149 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~---~~lDl~~lh~~~~~-~~~~~~~~~l~~l~~~ 149 (249)
.....+++.+++.++.+.. ...|++++..+... .+..+..+.|..|.++
T Consensus 62 V~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 62 VVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred hhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 5677888888888876632 35799999988654 4667777777776654
No 318
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=20.76 E-value=5.6e+02 Score=22.21 Aligned_cols=119 Identities=11% Similarity=0.056 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEeCcCCcCC--ChHHHHHHHHhcCCC-CCCeEEEeecCcccCCCCCcCCCCHHHHHHHH
Q 025658 34 PKPESDMIALIHHAINSGITLLDTSDIYGP--HTNEILLGKALKGGM-RERVELATKFGISFADGKREIRGDPAYVRAAC 110 (249)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g~se~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 110 (249)
..+.+++.++++.+.+.|+..|--.-.-.. -.-+.++.. +++.. -.++.|+|-.. .+.+ .
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~-i~~~~~l~~i~itTNG~---------------ll~~-~ 106 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVAR-LGKLPGLEELSLTTNGS---------------RLAR-F 106 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHHH-HHhCCCCceEEEEeChh---------------HHHH-H
Confidence 357788999999999999988764321000 012233332 33211 12344544322 1222 3
Q ss_pred HHHHHHcCCCccceEEeecCCCC--------CCHHHHHHHHHHHHHcCc----ccEEEcCcccHHHHHHHhh
Q 025658 111 EASLKRLDIDCIDLYYQHRIDTR--------VPIEVTIGELKKLVEEGK----IKYIGLSEASASTIRRAHA 170 (249)
Q Consensus 111 ~~sL~rLg~~~lDl~~lh~~~~~--------~~~~~~~~~l~~l~~~G~----ir~iGvs~~~~~~l~~~~~ 170 (249)
-+.|...|++++. +-|+..++. ..++.+++.++.+++.|. |..+.+...+.+++.++++
T Consensus 107 ~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~ 177 (329)
T PRK13361 107 AAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVE 177 (329)
T ss_pred HHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHH
Confidence 3455666766554 344554331 346788999999998885 2334444455566655543
No 319
>cd08620 PI-PLCXDc_like_1 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=20.74 E-value=5e+02 Score=22.26 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=13.6
Q ss_pred HHHHHhcCCCEEeCcCCc
Q 025658 44 IHHAINSGITLLDTSDIY 61 (249)
Q Consensus 44 l~~A~~~Gi~~~DtA~~Y 61 (249)
+..=++.|||+||--..|
T Consensus 36 i~~QL~~GiRyfDlRv~~ 53 (281)
T cd08620 36 VSTQLALGARYFDFRPGY 53 (281)
T ss_pred HHHHHhcCcEEEEEEeee
Confidence 566788999999885433
No 320
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=20.73 E-value=5.6e+02 Score=22.18 Aligned_cols=101 Identities=16% Similarity=0.122 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEE--cCcccHHHHHHHhhcCCeeEEe
Q 025658 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIG--LSEASASTIRRAHAVHPITAVQ 178 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG--vs~~~~~~l~~~~~~~~~~~~q 178 (249)
.+++.+.+-....+++. . ++.|-.|-...+.+ .|..|.+-.. .+|.-+| +...++..+.+.++......+-
T Consensus 133 ~s~delid~y~~li~~Y----P-IvsIEDpf~edD~e-~w~~lt~~~g-~~~~iVGDDl~vTn~~ri~~~i~~~~~na~l 205 (295)
T PF00113_consen 133 KSSDELIDYYKDLIKKY----P-IVSIEDPFDEDDWE-GWAKLTKRLG-DKIQIVGDDLFVTNPKRIKKGIEKKACNALL 205 (295)
T ss_dssp EEHHHHHHHHHHHHHHS------EEEEESSS-TT-HH-HHHHHHHHHT-TTSEEEESTTTTT-HHHHHHHHHCT--SEEE
T ss_pred cCHHHHHHHHHHHHHhc----C-eEEEEccccccchH-HHHHHHHhhh-cceeeecccccccchhhhhccchhhhccchh
Confidence 56777777666666654 4 78888886655433 5555554443 3688888 3456789999988775545554
Q ss_pred eccCccCc-CchhhHHHHHHHcCCeEEEccc
Q 025658 179 LEWSLWSR-DVEAEIVPTCRELGIGIVAYSP 208 (249)
Q Consensus 179 ~~~n~~~~-~~~~~~~~~~~~~gi~v~a~sp 208 (249)
+..|-.-. ...-+.+.+++++|..++...-
T Consensus 206 lK~NQigTvte~lea~~~a~~~g~~~vvS~r 236 (295)
T PF00113_consen 206 LKPNQIGTVTETLEAVKLAKSAGWGVVVSHR 236 (295)
T ss_dssp E-HHHHSSHHHHHHHHHHHHHTT-EEEEE--
T ss_pred hhhhhhHHHHHHHHHHHHHHHCCceeeccCC
Confidence 44443221 1123778889999988876553
No 321
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=20.60 E-value=6.5e+02 Score=22.88 Aligned_cols=108 Identities=14% Similarity=0.094 Sum_probs=54.7
Q ss_pred cCCcCCChHHHHHHHHhcC----CCCCCeEEEeecCcccCCCCCcCCCCHHHHHHHHHHHHHHcCCC-ccceEEeecCCC
Q 025658 58 SDIYGPHTNEILLGKALKG----GMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDID-CIDLYYQHRIDT 132 (249)
Q Consensus 58 A~~Yg~g~se~~lg~~l~~----~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~rLg~~-~lDl~~lh~~~~ 132 (249)
.-.|| .|+-+-++|++ .+.+=++|.|-..... -.+.+..-+++.-++.... .+.++.++.|+.
T Consensus 64 d~V~G---g~~~L~~ai~~~~~~~~p~~I~v~ttC~~~i---------iGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf 131 (435)
T cd01974 64 AAVFG---GQNNLIDGLKNAYAVYKPDMIAVSTTCMAEV---------IGDDLNAFIKNAKNKGSIPADFPVPFANTPSF 131 (435)
T ss_pred ceEEC---cHHHHHHHHHHHHHhcCCCEEEEeCCchHhh---------hhccHHHHHHHHHHhccCCCCCeEEEecCCCC
Confidence 34577 56666777765 3444466666554322 2233333333333333211 368889988876
Q ss_pred CCCHH----HHHHHHHH-HHH-------cCcccEEEcCc--cc-HHHHHHHhhcCCeeEE
Q 025658 133 RVPIE----VTIGELKK-LVE-------EGKIKYIGLSE--AS-ASTIRRAHAVHPITAV 177 (249)
Q Consensus 133 ~~~~~----~~~~~l~~-l~~-------~G~ir~iGvs~--~~-~~~l~~~~~~~~~~~~ 177 (249)
..... .++++|-+ +.. .+.|.-||-.+ .+ .+++.++++...+.++
T Consensus 132 ~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 132 VGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 54332 23333332 222 23455665222 22 5677777776555554
No 322
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=20.58 E-value=3.3e+02 Score=22.67 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHHhc-CCC-EEeCcCCcCCChHHHHHHHHhcC---CCCCCeEEEe-ecCcccCCCCCcCCCCHHHHHH
Q 025658 35 KPESDMIALIHHAINS-GIT-LLDTSDIYGPHTNEILLGKALKG---GMRERVELAT-KFGISFADGKREIRGDPAYVRA 108 (249)
Q Consensus 35 ~~~~~~~~~l~~A~~~-Gi~-~~DtA~~Yg~g~se~~lg~~l~~---~~r~~~~i~t-K~~~~~~~~~~~~~~~~~~i~~ 108 (249)
.+.++..+.++.=.+. .+. .+|.-..||+ +..-+.+.+++ .--.-+.|-= |.+. . + ..-.+.+....
T Consensus 52 lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~--~~~~v~~tv~~~~~aG~agi~IEDq~~~~-~--~--~~l~~~ee~~~ 124 (238)
T PF13714_consen 52 LTLTEMLAAVRRIARAVSIPVIVDADTGYGN--DPENVARTVRELERAGAAGINIEDQRCGH-G--G--KQLVSPEEMVA 124 (238)
T ss_dssp S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSS--SHHHHHHHHHHHHHCT-SEEEEESBSTTT-S--T--T-B--HHHHHH
T ss_pred CCHHHHHHHHHHHHhhhcCcEEEEcccccCc--hhHHHHHHHHHHHHcCCcEEEeeccccCC-C--C--CceeCHHHHHH
Confidence 3445544444433321 333 4688888883 23333444443 0111122221 3331 1 1 12347777777
Q ss_pred HHHHHHHHcCCCccceEEeecCCCC----CCHHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHhhcCCeeEEeeccCcc
Q 025658 109 ACEASLKRLDIDCIDLYYQHRIDTR----VPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLW 184 (249)
Q Consensus 109 ~~~~sL~rLg~~~lDl~~lh~~~~~----~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~ 184 (249)
.++..++... -.|++++-+-|.. ..+++.++-.....+.|-=--.=-+-.+.++++++.+..+ .+.|+.
T Consensus 125 kI~Aa~~a~~--~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~-----~Pl~v~ 197 (238)
T PF13714_consen 125 KIRAAVDARR--DPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAVD-----GPLNVN 197 (238)
T ss_dssp HHHHHHHHHS--STTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHHS-----SEEEEE
T ss_pred HHHHHHHhcc--CCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcC-----CCEEEE
Confidence 7777777665 2458888887763 3677888888888888864333333356777777765433 222222
Q ss_pred CcCchhhHHHHHHHcCCeEEEcccCc
Q 025658 185 SRDVEAEIVPTCRELGIGIVAYSPLG 210 (249)
Q Consensus 185 ~~~~~~~~~~~~~~~gi~v~a~spl~ 210 (249)
.. +..--.+.+++.|+..+.|.+..
T Consensus 198 ~~-~~~~~~~eL~~lGv~~v~~~~~~ 222 (238)
T PF13714_consen 198 PG-PGTLSAEELAELGVKRVSYGNSL 222 (238)
T ss_dssp TT-SSSS-HHHHHHTTESEEEETSHH
T ss_pred cC-CCCCCHHHHHHCCCcEEEEcHHH
Confidence 21 22366888999999999998764
No 323
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=20.57 E-value=5.4e+02 Score=21.97 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEeCcC
Q 025658 36 PESDMIALIHHAINSGITLLDTSD 59 (249)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DtA~ 59 (249)
.+|.....++.|++.|++.|++-=
T Consensus 39 ~PENTl~Af~~A~~~Gad~iE~DV 62 (300)
T cd08612 39 NLENTMEAFEHAVKVGTDMLELDV 62 (300)
T ss_pred CCccHHHHHHHHHHcCCCEEEEEe
Confidence 347799999999999999998743
No 324
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=20.53 E-value=2.9e+02 Score=23.65 Aligned_cols=61 Identities=16% Similarity=0.084 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHcCCCccceEEeecCCCCCC---HHHHHHHHHHHHHcCcccEEEcCcccHHHHHHHh
Q 025658 106 VRAACEASLKRLDIDCIDLYYQHRIDTRVP---IEVTIGELKKLVEEGKIKYIGLSEASASTIRRAH 169 (249)
Q Consensus 106 i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~---~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 169 (249)
.++.+.-.+.-++ ..++++|..|....+ ..+.++.+.++.++|. +.|=+|++..+.++.+.
T Consensus 141 ~kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~ 204 (293)
T COG1131 141 MKQRLSIALALLH--DPELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEELC 204 (293)
T ss_pred HHHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhC
Confidence 3444444444444 468999999976654 4578999999999997 78889999999988863
No 325
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=20.35 E-value=6.1e+02 Score=22.47 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHhcCCCEEeCc
Q 025658 35 KPESDMIALIHHAINSGITLLDTS 58 (249)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DtA 58 (249)
.+.++..++++...+.||..|+.+
T Consensus 20 ~s~~~k~~ia~~L~~~Gv~~IEvG 43 (365)
T TIGR02660 20 FTAAEKLAIARALDEAGVDELEVG 43 (365)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 356788899999999999999996
No 326
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=20.33 E-value=5.1e+02 Score=22.24 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEeCcCCcCCChHHHHH
Q 025658 34 PKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILL 70 (249)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~se~~l 70 (249)
..++++.+++++.|-+.||+.|=-=+.-| +++..+
T Consensus 68 ~yT~~di~elv~yA~~rgI~viPEiD~PG--H~~a~~ 102 (303)
T cd02742 68 FYTYAQLKDIIEYAAARGIEVIPEIDMPG--HSTAFV 102 (303)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEeccchH--HHHHHH
Confidence 45789999999999999998874333333 666544
No 327
>PRK11024 colicin uptake protein TolR; Provisional
Probab=20.32 E-value=2.8e+02 Score=20.83 Aligned_cols=52 Identities=23% Similarity=0.219 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCHHHHHHHHHHHHHcCcccEEEcC
Q 025658 102 DPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLS 158 (249)
Q Consensus 102 ~~~~i~~~~~~sL~rLg~~~lDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs 158 (249)
+.+.+...+++.++. .-+...+=..|...+.....+.|+.+++.|. ..+++.
T Consensus 86 ~~~~L~~~l~~~~~~----~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~-~~v~l~ 137 (141)
T PRK11024 86 PEEQVVAEAKSRFKA----NPKTVFLIGGAKDVPYDEIIKALNLLHSAGV-KSVGLM 137 (141)
T ss_pred CHHHHHHHHHHHHhh----CCCceEEEEcCCCCCHHHHHHHHHHHHHcCC-CeEEEE
Confidence 445555555544432 2344444456777889999999999999984 446653
No 328
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=20.19 E-value=81 Score=30.11 Aligned_cols=100 Identities=7% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCccceE---------EeecCCCCCCHHHHHHHHHHHHHcCcccE---EEcCcccHHHHHHHhhc---
Q 025658 107 RAACEASLKRLDIDCIDLY---------YQHRIDTRVPIEVTIGELKKLVEEGKIKY---IGLSEASASTIRRAHAV--- 171 (249)
Q Consensus 107 ~~~~~~sL~rLg~~~lDl~---------~lh~~~~~~~~~~~~~~l~~l~~~G~ir~---iGvs~~~~~~l~~~~~~--- 171 (249)
+-.+-..|.+.|.+.|++. -...+++...+...-+.+....-..++|. +|..++..+.+++.++.
T Consensus 23 kl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~ 102 (582)
T TIGR01108 23 MLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVE 102 (582)
T ss_pred HHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHHHHHH
Q ss_pred CCeeEEeeccCccCcCchhhHHHHHHHcCCeEEEc
Q 025658 172 HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 206 (249)
Q Consensus 172 ~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 206 (249)
..++.+.+-..+.+...-...+++++++|..+...
T Consensus 103 ~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~ 137 (582)
T TIGR01108 103 NGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGT 137 (582)
T ss_pred CCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEE
No 329
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=20.17 E-value=94 Score=25.43 Aligned_cols=103 Identities=13% Similarity=0.118 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHhc-----CCCEEeCcCCcCCChHHHHHHHHhcCC-CCCCeEEEeecCcccCCCCCcCCCCHHHHHH
Q 025658 35 KPESDMIALIHHAINS-----GITLLDTSDIYGPHTNEILLGKALKGG-MRERVELATKFGISFADGKREIRGDPAYVRA 108 (249)
Q Consensus 35 ~~~~~~~~~l~~A~~~-----Gi~~~DtA~~Yg~g~se~~lg~~l~~~-~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~ 108 (249)
.++++..+.++.|++. |+|----+... .++..+...++.. .|.-+||=++-....
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T---~~~~~m~~vl~~l~~~gl~FvDS~T~~~s---------------- 131 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFT---SDREAMRWVLEVLKERGLFFVDSRTTPRS---------------- 131 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHH---C-HHHHHHHHHHHHHTT-EEEE-S--TT-----------------
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCcccc---CCHHHHHHHHHHHHHcCCEEEeCCCCccc----------------
Confidence 4778999999999987 44433222222 3666666666652 455566646554221
Q ss_pred HHHHHHHHcCCCc--cceEEeecCCCCCCHHHHHHHH-HHHHHcCcccEEEc
Q 025658 109 ACEASLKRLDIDC--IDLYYQHRIDTRVPIEVTIGEL-KKLVEEGKIKYIGL 157 (249)
Q Consensus 109 ~~~~sL~rLg~~~--lDl~~lh~~~~~~~~~~~~~~l-~~l~~~G~ir~iGv 157 (249)
...+.-+++|+.+ -|+|+=|.. ....+...++.+ ...+++|..-.||=
T Consensus 132 ~a~~~A~~~gvp~~~rdvfLD~~~-~~~~I~~ql~~~~~~A~~~G~aI~Igh 182 (213)
T PF04748_consen 132 VAPQVAKELGVPAARRDVFLDNDQ-DEAAIRRQLDQAARIARKQGSAIAIGH 182 (213)
T ss_dssp SHHHHHHHCT--EEE-SEETTST--SHHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred HHHHHHHHcCCCEEeeceecCCCC-CHHHHHHHHHHHHHhhhhcCcEEEEEc
Confidence 1345556666653 455443332 223344444433 33445666555553
No 330
>PRK01903 rnpA ribonuclease P; Reviewed
Probab=20.08 E-value=3.9e+02 Score=20.07 Aligned_cols=47 Identities=11% Similarity=0.050 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHH----cCC----------CccceEEeecC--CCCCCHHHHHHHHHHHH
Q 025658 101 GDPAYVRAACEASLKR----LDI----------DCIDLYYQHRI--DTRVPIEVTIGELKKLV 147 (249)
Q Consensus 101 ~~~~~i~~~~~~sL~r----Lg~----------~~lDl~~lh~~--~~~~~~~~~~~~l~~l~ 147 (249)
.....+++.++++.+. |.. .++|++++..+ ....+.++.-+.|..|.
T Consensus 65 V~RNRiKR~lREa~R~~~~~l~~~~~~~~~~~~~~~~iv~i~~~~~~~~~~~~~l~~~l~~ll 127 (133)
T PRK01903 65 VKRNRIKRLMREAYRLEKHVLLDRLETDAGAKNRQLAIAFLYTGRSDEIPSLAEFRREMRKLL 127 (133)
T ss_pred hhhhHHHHHHHHHHHHhHhhhcccccccccccCcceEEEEEEeccccccCCHHHHHHHHHHHH
Confidence 4667777777777765 332 24799999987 33334555555555554
Done!