BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025660
(249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 268 bits (686), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 167/217 (76%), Gaps = 4/217 (1%)
Query: 5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLR 64
KGRVCVTGGTGF+ SW+I LL++GYSV TT+R+ DPE + +D+SFL NLPGASE+L
Sbjct: 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRA--DPERK--RDVSFLTNLPGASEKLH 56
Query: 65 IFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGT 124
F+ADLS+PD F AAI GC G+ H A+P+DF EPEE++T+R ++G LGILK+C+ S T
Sbjct: 57 FFNADLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKT 116
Query: 125 VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE 184
VKR +YTSS +AV +N KD D++DE+ WSDVD +R + +G +YA+SKTL E+A LEF E
Sbjct: 117 VKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGE 176
Query: 185 EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN 221
++G+D+VTLI +VG F+CPK S+ +L L+LG
Sbjct: 177 QNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGK 213
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
VCVTG +GFI SWL+MRLL+ GY+V TVR DP N K + L +LP A L ++
Sbjct: 8 VCVTGASGFIGSWLVMRLLERGYTVRATVR---DP--TNVKKVKHLLDLPKAETHLTLWK 62
Query: 68 ADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKR 127
ADL+ FD AI GCTGV HVATP+DFE K+PE + + I G LGI+KSC + TV+R
Sbjct: 63 ADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRR 122
Query: 128 VVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR--KLDSWGKSYAISKTLTERAALEFAEE 185
+V+TSS V + + + DE+ WSD+++ R K+ +W Y +SKTL E+AA ++A+E
Sbjct: 123 LVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAW--MYFVSKTLAEQAAWKYAKE 180
Query: 186 HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN 221
+ +D +T+IP++VVGPFI S+ ++L+ I GN
Sbjct: 181 NNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGN 216
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 171 bits (432), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 140/222 (63%), Gaps = 12/222 (5%)
Query: 4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
GK CV GGTGF+AS L+ LL GY+V TTVR DP+ N K +S L L + L
Sbjct: 8 GKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVR---DPD--NQKKVSHLLELQELGD-L 61
Query: 64 RIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG 123
+IF ADL+ F+A IAGC V HVATPV F ++PE + + AI G + ++K+C ++
Sbjct: 62 KIFRADLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAK 121
Query: 124 TVKRVVYTSSNAAVFYNDKDVD--MMDETFWSDVDYIR--KLDSWGKSYAISKTLTERAA 179
+VKRV+ TSS AAV N D ++DE W+D++++ K +WG Y SKTL E+AA
Sbjct: 122 SVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWG--YPASKTLAEKAA 179
Query: 180 LEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGN 221
+FAEE+ +DL+T+IP+++ G + S+ +++LI GN
Sbjct: 180 WKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGN 221
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 127/276 (46%), Gaps = 44/276 (15%)
Query: 8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
V VTG GF+AS ++ +LL+HGY V T RS + + + PG E +
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKR---WDAKYPGRFETAVV-- 68
Query: 68 ADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKR 127
D+ +D I G GV H+A+ V F +K +EV+T AI GTL L++ + +VKR
Sbjct: 69 EDMLKQGAYDEVIKGAAGVAHIASVVSFSNKY-DEVVTP-AIGGTLNALRAAAATPSVKR 126
Query: 128 VVYTSSNAAVFYNDKDVD--MMDETFWSDVDYIRKLDSWGKS--------YAISKTLTER 177
V TSS + +V+ +DE W +++ I K + +S YA SKT E
Sbjct: 127 FVLTSSTVSALIPKPNVEGIYLDEKSW-NLESIDKAKTLPESDPQKSLWVYAASKTEAEL 185
Query: 178 AALEFAEEHG--LDLVTLIPSMVVGPFICPK-------------FAGSVRSSLALI---- 218
AA +F +E+ L ++P+ +G P+ F G V +LAL+
Sbjct: 186 AAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQY 245
Query: 219 ------LGNVKLKICCVMNRSHTLFVYAIAFAFAFN 248
+G + L C V+ + VY A F +N
Sbjct: 246 YVSAVDIGLLHLG-CLVLPQIERRRVYGTAGTFDWN 280
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 125/276 (45%), Gaps = 44/276 (15%)
Query: 8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
V VTG GF+AS ++ +LL+HGY V T RS + + + PG E +
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKR---WDAKYPGRFETAVV-- 68
Query: 68 ADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKR 127
D +D I G GV H+A+ V F +K +EV+T AI GTL L++ + +VKR
Sbjct: 69 EDXLKQGAYDEVIKGAAGVAHIASVVSFSNKY-DEVVTP-AIGGTLNALRAAAATPSVKR 126
Query: 128 VVYTSSNAAVFYNDKDVD--MMDETFWSDVDYIRKLDSWGKS--------YAISKTLTER 177
V TSS + +V+ +DE W +++ I K + +S YA SKT E
Sbjct: 127 FVLTSSTVSALIPKPNVEGIYLDEKSW-NLESIDKAKTLPESDPQKSLWVYAASKTEAEL 185
Query: 178 AALEFAEEHG--LDLVTLIPSMVVGPFICPK-------------FAGSVRSSLALI---- 218
AA +F +E+ L ++P+ +G P+ F G V +LAL
Sbjct: 186 AAWKFXDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWXXSLFNGEVSPALALXPPQY 245
Query: 219 ------LGNVKLKICCVMNRSHTLFVYAIAFAFAFN 248
+G + L C V+ + VY A F +N
Sbjct: 246 YVSAVDIGLLHLG-CLVLPQIERRRVYGTAGTFDWN 280
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 80/207 (38%), Gaps = 26/207 (12%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPG-----AS 60
R+ VTGG GFI S + +LL Y V LD L++ N A
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLD-------SLTYAGNRANLAPVDAD 54
Query: 61 ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDK-EPEEVITQRAINGTLGILKSC 119
RLR H D+ + G ++H A + V T+ + GT +L+
Sbjct: 55 PRLRFVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCA 114
Query: 120 LKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAA 179
+ +G V RVV+ S+N +D W++ + YA SK ++ A
Sbjct: 115 VDAG-VGRVVHVSTNQV-------YGSIDSGSWTESSPLEP----NSPYAASKAGSDLVA 162
Query: 180 LEFAEEHGLDLVTLIPSMVVGPFICPK 206
+ +GLD+ GP+ P+
Sbjct: 163 RAYHRTYGLDVRITRCCNNYGPYQHPE 189
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 81/207 (39%), Gaps = 26/207 (12%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPG-----AS 60
R+ VTGG GFI S + +LL Y V LD L++ N A
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLD-------SLTYAGNRANLAPVDAD 54
Query: 61 ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDK-EPEEVITQRAINGTLGILKSC 119
RLR H D+ + G ++H A + V T+ + GT +L+
Sbjct: 55 PRLRFVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCA 114
Query: 120 LKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAA 179
+ +G V RVV+ S+ D+ +D W++ + YA SK ++ A
Sbjct: 115 VDAG-VGRVVHVST-------DEVYGSIDSGSWTESSPLEP----NSPYAASKAGSDLVA 162
Query: 180 LEFAEEHGLDLVTLIPSMVVGPFICPK 206
+ +GLD+ GP+ P+
Sbjct: 163 RAYHRTYGLDVRITRCCNNYGPYQHPE 189
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 20/133 (15%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
R+ VTG G + + RL + S LDP N +
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEE----------------CV 48
Query: 67 HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK 126
DL+ + +A +AGC G++H+ ++P E I Q I G + ++ G
Sbjct: 49 QCDLADANAVNAMVAGCDGIVHLGG---ISVEKPFEQILQGNIIGLYNLYEAARAHGQ-P 104
Query: 127 RVVYTSSNAAVFY 139
R+V+ SSN + Y
Sbjct: 105 RIVFASSNHTIGY 117
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 20/133 (15%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
R+ VTG G + + RL + S LDP N +
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEE----------------CV 48
Query: 67 HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK 126
DL+ + +A +AGC G++H+ ++P E I Q I G + ++ G
Sbjct: 49 QCDLADANAVNAMVAGCDGIVHLGG---ISVEKPFEQILQGNIIGLYNLYEAARAHGQ-P 104
Query: 127 RVVYTSSNAAVFY 139
R+V+ SSN + Y
Sbjct: 105 RIVFASSNHTIGY 117
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 88/219 (40%), Gaps = 27/219 (12%)
Query: 5 KGRVCVTGGTGFIASWLIMRLL--DHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASER 62
+ RV + G GFI + L RLL DH + S+ N F++
Sbjct: 13 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVE-------- 64
Query: 63 LRIFHADLS-HPDGFDAAIAGCTGVLH---VATPVDFEDKEPEEVITQRAINGTLGILKS 118
D+S H + + + C VL +ATP+++ + P V + L I++
Sbjct: 65 -----GDISIHSEWIEYHVKKCDVVLPLVAIATPIEYT-RNPLRVF-ELDFEENLRIIRY 117
Query: 119 CLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERA 178
C+K KR+++ S+ A Y DE + + W Y++SK L +R
Sbjct: 118 CVKYR--KRIIFPST--AEVYGMCSDKYFDEDHSNLIVGPVNKPRW--IYSVSKQLLDRV 171
Query: 179 ALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL 217
+ E+ GL P +GP + A + SS A+
Sbjct: 172 IWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAI 210
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 20/176 (11%)
Query: 1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
ME+ + R+ +TGG GF+ S L +L+ G+ V T V + RN +
Sbjct: 1 MEKDRKRILITGGAGFVGSHLTDKLMMDGHEV-TVVDNFFTGRKRNVEHWI-------GH 52
Query: 61 ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFED--KEPEEVITQRAINGTLGILKS 118
E + + D+ P + + H+A+P + P + + I GTL +L
Sbjct: 53 ENFELINHDVVEPLYIE-----VDQIYHLASPASPPNYMYNPIKTLKTNTI-GTLNMLGL 106
Query: 119 CLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTL 174
+ G R++ S++ Y D +V E +W V+ I + + +++T+
Sbjct: 107 AKRVGA--RLLLASTSEV--YGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETM 158
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 27/219 (12%)
Query: 5 KGRVCVTGGTGFIASWLIMRLL--DHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASER 62
+ RV + G GFI + L RLL DH + S+ N F++
Sbjct: 13 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVE-------- 64
Query: 63 LRIFHADLS-HPDGFDAAIAGCTGVLH---VATPVDFEDKEPEEVITQRAINGTLGILKS 118
D+S H + + + C VL +ATP+++ + P V + L I++
Sbjct: 65 -----GDISIHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNPLRVF-ELDFEENLRIIRY 117
Query: 119 CLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERA 178
C+K KR+++ S++ Y DE + + W Y++SK L +R
Sbjct: 118 CVKYR--KRIIFPSTSEV--YGMCSDKYFDEDHSNLIVGPVNKPRW--IYSVSKQLLDRV 171
Query: 179 ALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL 217
+ E+ GL P +GP + A + SS A+
Sbjct: 172 IWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAI 210
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 27/219 (12%)
Query: 5 KGRVCVTGGTGFIASWLIMRLL--DHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASER 62
+ RV + G GFI + L RLL DH + S+ N F++
Sbjct: 13 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVE-------- 64
Query: 63 LRIFHADLS-HPDGFDAAIAGCTGVLH---VATPVDFEDKEPEEVITQRAINGTLGILKS 118
D+S H + + + C VL +ATP+++ + P V + L I++
Sbjct: 65 -----GDISIHSEWIEYHVKKCDVVLPLVAIATPIEYT-RNPLRVF-ELDFEENLRIIRY 117
Query: 119 CLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERA 178
C+K KR+++ S++ Y DE + + W Y++SK L +R
Sbjct: 118 CVKYR--KRIIFPSTSEV--YGMCSDKYFDEDHSNLIVGPVNKPRW--IYSVSKQLLDRV 171
Query: 179 ALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL 217
+ E+ GL P +GP + A + SS A+
Sbjct: 172 IWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAI 210
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 27/219 (12%)
Query: 5 KGRVCVTGGTGFIASWLIMRLL--DHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASER 62
+ RV + G GFI + L RLL DH + S+ N F++
Sbjct: 13 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVE-------- 64
Query: 63 LRIFHADLS-HPDGFDAAIAGCTGVLH---VATPVDFEDKEPEEVITQRAINGTLGILKS 118
D+S H + + + C VL +ATP+++ + P V + L I++
Sbjct: 65 -----GDISIHSEWIEYHVKKCDVVLPLVAIATPIEYT-RNPLRVF-ELDFEENLRIIRY 117
Query: 119 CLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERA 178
C+K KR+++ S++ Y DE + + W Y++SK L +R
Sbjct: 118 CVKYR--KRIIFPSTSEV--YGMCSDKYFDEDHSNLIVGPVNKPRW--IYSVSKQLLDRV 171
Query: 179 ALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL 217
+ E+ GL P +GP + A + SS A+
Sbjct: 172 IWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAI 210
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 27/219 (12%)
Query: 5 KGRVCVTGGTGFIASWLIMRLL--DHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASER 62
+ RV + G GFI + L RLL DH + S+ N F++
Sbjct: 13 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVE-------- 64
Query: 63 LRIFHADLS-HPDGFDAAIAGCTGVLH---VATPVDFEDKEPEEVITQRAINGTLGILKS 118
D+S H + + + C VL +ATP+++ + P V + L I++
Sbjct: 65 -----GDISIHSEWIEYHVKKCDVVLPLVAIATPIEYT-RNPLRVF-ELDFEENLRIIRY 117
Query: 119 CLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERA 178
C+K KR+++ S++ Y DE + + W Y++SK L +R
Sbjct: 118 CVKYR--KRIIFPSTSEV--YGMCSDKYFDEDHSNLIVGPVNKPRW--IYSVSKQLLDRV 171
Query: 179 ALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL 217
+ E+ GL P +GP + A + SS A+
Sbjct: 172 IWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAI 210
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 87/217 (40%), Gaps = 27/217 (12%)
Query: 7 RVCVTGGTGFIASWLIMRLL--DHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLR 64
RV + G GFI + L RLL DH + S+ N F++
Sbjct: 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVE---------- 51
Query: 65 IFHADLS-HPDGFDAAIAGCTGVLH---VATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
D+S H + + + C VL +ATP+++ + P V + L I++ C+
Sbjct: 52 ---GDISIHSEWIEYHVKKCDVVLPLVAIATPIEYT-RNPLRVF-ELDFEENLRIIRYCV 106
Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
K KR+++ S++ Y DE + + W Y++SK L +R
Sbjct: 107 KYR--KRIIFPSTSEV--YGMCSDKYFDEDHSNLIVGPVNKPRW--IYSVSKQLLDRVIW 160
Query: 181 EFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL 217
+ E+ GL P +GP + A + SS A+
Sbjct: 161 AYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAI 197
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVT------TTVRSELDP-EHRNSKDLSFLKNLPGA 59
RV VTGG+G+I S ++LL +G+ V + RS L E K +F++
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVE----G 57
Query: 60 SERLRIFHADLSHPDGFDAAI--AGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGIL 116
R ++ H D I AG V V P+++ D +NGTL ++
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN---------VNGTLRLI 108
Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDK 142
S +++ VK +++S AA Y D+
Sbjct: 109 -SAMRAANVKNFIFSS--AATVYGDQ 131
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 64/155 (41%), Gaps = 22/155 (14%)
Query: 5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTT---VRSELDP----EHRNSKDLSFLKNLP 57
KG + VTGG G+I S + LL HGY V V S+ + E K +F +
Sbjct: 5 KGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDV 64
Query: 58 GASERL-RIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGIL 116
L RIF A HP T +H A + + + R +L L
Sbjct: 65 SDERALARIFDA---HP---------ITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSL 112
Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETF 151
++ VKR+V++SS A Y + +DETF
Sbjct: 113 LRVMRERAVKRIVFSSS--ATVYGVPERSPIDETF 145
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVT------TTVRSELDP-EHRNSKDLSFLKNLPGA 59
RV VTGG+G+I S ++LL +G+ V + RS L E K +F++
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVE----G 57
Query: 60 SERLRIFHADLSHPDGFDAAI--AGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGIL 116
R ++ H D I AG V V P+++ D +NGTL ++
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN---------VNGTLRLI 108
Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDK 142
S +++ VK +++SS A Y D+
Sbjct: 109 -SAMRAANVKNFIFSSS--ATVYGDQ 131
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVT------TTVRSELDP-EHRNSKDLSFLKNLPGA 59
RV VTGG+G+I S ++LL +G+ V + RS L E K +F++
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVE----G 57
Query: 60 SERLRIFHADLSHPDGFDAAI--AGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGIL 116
R ++ H D I AG V V P+++ D +NGTL ++
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN---------VNGTLRLI 108
Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDK 142
S +++ VK +++S AA Y D+
Sbjct: 109 -SAMRAANVKNFIFSS--AATVYGDQ 131
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVT------TTVRSELDP-EHRNSKDLSFLKNLPGA 59
RV VTGG+G+I S ++LL +G+ V + RS L E K +F++
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVE----G 57
Query: 60 SERLRIFHADLSHPDGFDAAI--AGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGIL 116
R ++ H D I AG V V P+++ D +NGTL ++
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN---------VNGTLRLI 108
Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDK 142
S +++ VK +++SS A Y D+
Sbjct: 109 -SAMRAANVKNFIFSSS--ATVYGDQ 131
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 27/219 (12%)
Query: 5 KGRVCVTGGTGFIASWLIMRLL--DHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASER 62
+ RV + G GFI + L RLL DH + S+ N F++
Sbjct: 315 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVE-------- 366
Query: 63 LRIFHADLS-HPDGFDAAIAGCTGVLH---VATPVDFEDKEPEEVITQRAINGTLGILKS 118
D+S H + + + C VL +ATP+++ + P V + L I++
Sbjct: 367 -----GDISIHSEWIEYHVKKCDVVLPLVAIATPIEYT-RNPLRVF-ELDFEENLRIIRY 419
Query: 119 CLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERA 178
C+K KR+++ S++ Y DE + + W Y++SK L +R
Sbjct: 420 CVK--YRKRIIFPSTSEV--YGMCSDKYFDEDHSNLIVGPVNKPRW--IYSVSKQLLDRV 473
Query: 179 ALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL 217
+ E+ GL P +GP + A + SS A+
Sbjct: 474 IWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAI 512
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 26/146 (17%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVT------TTVRSELDP-EHRNSKDLSFLKNLPGA 59
RV VTGG+G+I S ++LL +G+ V + RS L E K +F++
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVE----G 57
Query: 60 SERLRIFHADLSHPDGFDAAI--AGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGIL 116
R ++ H D I AG V V P+++ D +NGTL ++
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN---------VNGTLRLI 108
Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDK 142
S +++ VK +++S AA Y D
Sbjct: 109 -SAMRAANVKNFIFSS--AATVYGDN 131
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 26/146 (17%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVT------TTVRSELDP-EHRNSKDLSFLKNLPGA 59
RV VTGG+G+I S ++LL +G+ V + RS L E K +F++
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVE----G 57
Query: 60 SERLRIFHADLSHPDGFDAAI--AGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGIL 116
R ++ H D I AG V V P+++ D +NGTL ++
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN---------VNGTLRLI 108
Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDK 142
S +++ VK +++S AA Y D
Sbjct: 109 -SAMRAANVKNFIFSS--AATVYGDN 131
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 26/146 (17%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVT------TTVRSELDP-EHRNSKDLSFLKNLPGA 59
RV VTGG+G+I S ++LL +G+ V + RS L E K +F++
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVE----G 57
Query: 60 SERLRIFHADLSHPDGFDAAI--AGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGIL 116
R ++ H D I AG V V P+++ D +NGTL ++
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN---------VNGTLRLI 108
Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDK 142
S +++ VK +++SS A Y D
Sbjct: 109 -SAMRAANVKNFIFSSS--ATVYGDN 131
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 26/146 (17%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVT------TTVRSELDP-EHRNSKDLSFLKNLPGA 59
RV VTGG+G+I S ++LL +G+ V + RS L E K +F++
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVE----G 57
Query: 60 SERLRIFHADLSHPDGFDAAI--AGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGIL 116
R ++ H D I AG V V P+++ D +NGTL ++
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN---------VNGTLRLI 108
Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDK 142
S +++ VK +++SS A Y D
Sbjct: 109 -SAMRAANVKNFIFSSS--ATVYGDN 131
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 74/201 (36%), Gaps = 24/201 (11%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
RV VTGG GFI S ++ LL G V LD K + K +P F
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAV-----LD-NLATGKRENVPKGVP-------FF 48
Query: 67 HADLSHPDGFDAAIAG--CTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGT 124
DL +G + A T V H A + + V+ L +
Sbjct: 49 RVDLRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYG 108
Query: 125 VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE 184
V+++V+ S+ A++ + + +ET+ YA SK E + +
Sbjct: 109 VEKLVFASTGGAIYGEVPEGERAEETWPPRPK---------SPYAASKAAFEHYLSVYGQ 159
Query: 185 EHGLDLVTLIPSMVVGPFICP 205
+GL V+L V GP P
Sbjct: 160 SYGLKWVSLRYGNVYGPRQDP 180
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 26/146 (17%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVT------TTVRSELDP-EHRNSKDLSFLKNLPGA 59
RV VTGG+G+I S ++LL +G+ V + RS L E K +F++
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVE----G 57
Query: 60 SERLRIFHADLSHPDGFDAAI--AGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGIL 116
R ++ H D I AG V V P+++ D +NGTL ++
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN---------VNGTLRLI 108
Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDK 142
S +++ VK +++S+ A Y D
Sbjct: 109 -SAMRAANVKNFIFSST--ATVYGDN 131
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 29/134 (21%)
Query: 8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL---- 63
+ VTGG GFI S ++ +L + S ++ + NL +E
Sbjct: 4 IVVTGGAGFIGSHVVDKLSE-------------------SNEIVVIDNLSSGNEEFVNEA 44
Query: 64 -RIFHADLSHPDGFDAAIAGCTGVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCL 120
R+ ADL+ D D + G V H+A D + P+E+ + T +L++
Sbjct: 45 ARLVKADLAADDIKD-YLKGAEEVWHIAANPDVRIGAENPDEIYRNNVL-ATYRLLEAMR 102
Query: 121 KSGTVKRVVYTSSN 134
K+G V R+V+TS++
Sbjct: 103 KAG-VSRIVFTSTS 115
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 26/146 (17%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVT------TTVRSELDP-EHRNSKDLSFLKNLPGA 59
RV VTGG+G+I S ++LL +G+ V + RS L E K +F++
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVE----G 57
Query: 60 SERLRIFHADLSHPDGFDAAI--AGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGIL 116
R ++ H D I AG V V P+++ D +NGTL ++
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN---------VNGTLRLI 108
Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDK 142
S +++ VK +++S A Y D
Sbjct: 109 -SAMRAANVKNFIFSS--VATVYGDN 131
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 14/133 (10%)
Query: 8 VCVTGGTGFIASWLIMRLLD--HGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRI 65
+ +TGGTG + ++LD + + R EL +++ N P R+R
Sbjct: 24 ILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDEL-----KQSEMAMEFNDP----RMRF 74
Query: 66 FHADLSHPDGFDAAIAGCTGVLHVAT--PVDFEDKEPEEVITQRAINGTLGILKSCLKSG 123
F D+ + + A+ G +H A V + P E I + I G ++ +CLK+
Sbjct: 75 FIGDVRDLERLNYALEGVDICIHAAALKHVPIAEYNPLECI-KTNIMGASNVINACLKNA 133
Query: 124 TVKRVVYTSSNAA 136
+ + ++ AA
Sbjct: 134 ISQVIALSTDKAA 146
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 19/139 (13%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
R+ VTGG GFI S L+ +L++ GY V ++ +S F+ P A +R
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVV-------DNLSSGRREFVN--PSAELHVRDL 52
Query: 67 HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVIT-QRAINGTLGILKSCLKSGTV 125
D S + A I G V H A + E ++ + T +L+ ++G V
Sbjct: 53 K-DYS----WGAGIKGDV-VFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTG-V 105
Query: 126 KRVVYTSSNAAVFYNDKDV 144
+ VV+ SS+ Y D DV
Sbjct: 106 RTVVFASSSTV--YGDADV 122
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 33.9 bits (76), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 8 VCVTGGTGFIASWLI---MRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPG------ 58
V +TG TGF+ +L+ +R LD + VR+E D + R + +F P
Sbjct: 76 VLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFK 135
Query: 59 --ASERLRIFHADLSHPD-GFD 77
A++RL + D S PD G D
Sbjct: 136 ELAADRLEVVAGDKSEPDLGLD 157
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 22/160 (13%)
Query: 2 EEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASE 61
E+ + R+ +TGG GF+ S L +L G+ V T V + RN + E
Sbjct: 24 EKDRKRILITGGAGFVGSHLTDKLXXDGHEV-TVVDNFFTGRKRNVEHWI-------GHE 75
Query: 62 RLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLK 121
+ + D+ P + + H+A+P + + T + T+G L
Sbjct: 76 NFELINHDVVEPLYIE-----VDQIYHLASPASPPNYXYNPIKTLKT--NTIGTLNXL-- 126
Query: 122 SGTVKRV---VYTSSNAAVFYNDKDVDMMDETFWSDVDYI 158
G KRV + +S + V Y D +V E +W V+ I
Sbjct: 127 -GLAKRVGARLLLASTSEV-YGDPEVHPQSEDYWGHVNPI 164
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 23/139 (16%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
R+ VTGG GFI S L+ +L++ GY V +D R++ G S L +
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVV-----VDIVQRDT----------GGSAELHV- 45
Query: 67 HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVIT-QRAINGTLGILKSCLKSGTV 125
DL + A I G V H A + E ++ + T +L+ ++G V
Sbjct: 46 -RDLKD-YSWGAGIKGDV-VFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTG-V 101
Query: 126 KRVVYTSSNAAVFYNDKDV 144
+ VV+ SS+ Y D DV
Sbjct: 102 RTVVFASSSTV--YGDADV 118
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 28/201 (13%)
Query: 8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
V V GG GF+ S L+ RLL+ G + V + L E N D ++
Sbjct: 35 VMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVR------------F 82
Query: 68 ADLSHPDGFDAAIAGCTG----VLHVATPVDFEDKEPEEVITQRAINGTLGILK--SCLK 121
++ S D DA +A V H+AT + + + N TL LK LK
Sbjct: 83 SETSITD--DALLASLQDEYDYVFHLATYHGNQSSIHDPLADHE--NNTLTTLKLYERLK 138
Query: 122 S-GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
+K+VVY+++ ++ +K D T +D+ + DS Y++SK E ++
Sbjct: 139 HFKRLKKVVYSAAGCSIA--EKTFDDAKATEETDIVSLHNNDS---PYSMSKIFGEFYSV 193
Query: 181 EFAEEHGLDLVTLIPSMVVGP 201
+ ++H L V V GP
Sbjct: 194 YYHKQHQLPTVRARFQNVYGP 214
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 96/247 (38%), Gaps = 46/247 (18%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVT-----TTVRSELDPEHRNSKDLSFLKNLPGASE 61
+V +TG G I S + LL+ G V T R E +H N L+F++
Sbjct: 23 KVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPN---LTFVEGSIADHA 79
Query: 62 RLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAIN--GTLGILKSC 119
+ DL PD V+H A K+P++ N G ++++
Sbjct: 80 LVNQLIGDL-QPDA----------VVHTAASY----KDPDDWYNDTLTNCVGGSNVVQAA 124
Query: 120 LKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAA 179
K V R VY + A+ Y K + +D+ R + SYAISK+ E
Sbjct: 125 -KKNNVGRFVYFQT--ALCYGVKPIQQP-----VRLDHPR--NPANSSYAISKSANE--- 171
Query: 180 LEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNVKLKICCVMNRSHTLFVY 239
++ E GLD VT + VVGP +V L + + C + ++ FV+
Sbjct: 172 -DYLEYSGLDFVTFRLANVVGP-------RNVSGPLPIFFQRLSEGKKCFVTKARRDFVF 223
Query: 240 AIAFAFA 246
A A
Sbjct: 224 VKDLARA 230
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 71/187 (37%), Gaps = 32/187 (17%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
R+ VTG G + S + H ++ VR LS + +L A I
Sbjct: 4 RLLVTGAAGGVGS----AIRPHLGTLAHEVR------------LSDIVDLGAAEAHEEIV 47
Query: 67 HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK 126
DL+ + C G++H+ V E P I Q I G + ++ G
Sbjct: 48 ACDLADAQAVHDLVKDCDGIIHLGG-VSVE--RPWNDILQANIIGAYNLYEAARNLGK-P 103
Query: 127 RVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAEEH 186
R+V+ SSN + Y + + D + R+ DS Y +SK E A + H
Sbjct: 104 RIVFASSNHTIGYYPRTTRI-------DTEVPRRPDS---LYGLSKCFGEDLASLYY--H 151
Query: 187 GLDLVTL 193
D+ TL
Sbjct: 152 KFDIETL 158
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGY 30
+V VTGG G+I S ++ LL+ GY
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGY 27
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGY 30
+V VTGG G+I S ++ LL+ GY
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGY 27
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGY 30
+V VTGG G+I S ++ LL+ GY
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGY 27
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 99/239 (41%), Gaps = 35/239 (14%)
Query: 6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDP---------------EHRNSKDL 50
G +TG TGF+ ++LI L + + + +R++ + E L
Sbjct: 151 GNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMML 210
Query: 51 SFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAIN 110
S ++ + G E + D+ P+ D I H +D E E+V Q
Sbjct: 211 SNIEVIVGDFECM----DDVVLPENMDTIIHAGARTDHFG-----DDDEFEKVNVQ---- 257
Query: 111 GTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAI 170
GT+ +++ L R++Y S+ + Y D+D D TF S+ D + K Y
Sbjct: 258 GTVDVIR--LAQQHHARLIYVSTISVGTY--FDIDTEDVTF-SEAD-VYKGQLLTSPYTR 311
Query: 171 SKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNVKLKICCV 229
SK +E LE A +GLD + + P+ +++++ ++ N L++ C+
Sbjct: 312 SKFYSELKVLE-AVNNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCI 369
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 8 VCVTGGTGFIASWLIMRLLDHGY 30
V VTGG G+I S ++ L+++GY
Sbjct: 14 VLVTGGAGYIGSHTVVELIENGY 36
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 30/152 (19%)
Query: 3 EGKGRVCVTGGTGFIASWLIMRLLD-----HGYSVTTTVRSELDPEHR----NSKDLSFL 53
+GK RV VTG TGF WL + L GYS+T L R ++ +
Sbjct: 8 QGK-RVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDI 66
Query: 54 KNLPGASERLRIFHADLSHPDGFDAAIAGCTGVLHVATP--VDFEDKEPEEVITQRAING 111
++ E +R F ++ V H+A V EP E + + G
Sbjct: 67 RDQNKLLESIREFQPEI---------------VFHMAAQPLVRLSYSEPVETYSTNVM-G 110
Query: 112 TLGILKSCLKSGTVKRVVYTSSNAAVFYNDKD 143
T+ +L++ G VK VV +S+ Y++K+
Sbjct: 111 TVYLLEAIRHVGGVKAVVNITSDKC--YDNKE 140
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 21/103 (20%)
Query: 5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDP------------------EHRN 46
K R+ +TGG GFI L L+ G VT + P E R+
Sbjct: 7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERD 66
Query: 47 SKDLSFLKNLPGASERLRIFHADLSHPDGFDAA---IAGCTGV 86
D+ + +L R F L + D D+ +A CT V
Sbjct: 67 LSDVRLVYHLASHKSVPRSFKQPLDYLDNVDSGRHLLALCTSV 109
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVR 37
RV V GGTGFI + L L G+ VT R
Sbjct: 2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSR 32
>pdb|3RTY|A Chain A, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|B Chain B, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|C Chain C, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|D Chain D, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|E Chain E, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|F Chain F, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|G Chain G, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|H Chain H, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
Length = 339
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 71 SHPDGFDAAIAGCTGVLHV--ATPVDFEDKEPEEVITQR----AINGTLGILKSCLKSGT 124
+ PD + ++ T +L V ATP+ K P+E+++Q+ AI T + S + S
Sbjct: 116 ARPDNY--MVSNGTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAA 173
Query: 125 VKRVVYTSSN-----AAVFYNDKDVDMMDETF 151
V + Y + FY+ +D+ +M ET+
Sbjct: 174 VSALGYLPQDLIGRSIMDFYHHEDLSVMKETY 205
>pdb|1WA9|A Chain A, Crystal Structure Of The Pas Repeat Region Of The
Drosophila Clock Protein Period
pdb|1WA9|B Chain B, Crystal Structure Of The Pas Repeat Region Of The
Drosophila Clock Protein Period
Length = 368
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 71 SHPDGFDAAIAGCTGVLHV--ATPVDFEDKEPEEVITQR----AINGTLGILKSCLKSGT 124
+ PD + ++ T +L V ATP+ K P+E+++Q+ AI T + S + S
Sbjct: 120 ARPDNY--MVSNGTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAA 177
Query: 125 VKRVVYTSSN-----AAVFYNDKDVDMMDETF 151
V + Y + FY+ +D+ +M ET+
Sbjct: 178 VSALGYLPQDLIGRSIMDFYHHEDLSVMKETY 209
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 97/239 (40%), Gaps = 35/239 (14%)
Query: 6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDP---------------EHRNSKDL 50
G +TG TGF+ ++LI L + + + +R++ + E L
Sbjct: 70 GNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLXTNLNDYFSEETVEXXL 129
Query: 51 SFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAIN 110
S ++ + G E D+ P+ D I H +D E E+V Q
Sbjct: 130 SNIEVIVGDFE----CXDDVVLPENXDTIIHAGARTDHFG-----DDDEFEKVNVQ---- 176
Query: 111 GTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAI 170
GT+ +++ L R++Y S+ + Y D+D D TF S+ D + K Y
Sbjct: 177 GTVDVIR--LAQQHHARLIYVSTISVGTY--FDIDTEDVTF-SEAD-VYKGQLLTSPYTR 230
Query: 171 SKTLTERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNVKLKICCV 229
SK +E LE A +GLD + + P+ +++++ + N L++ C+
Sbjct: 231 SKFYSELKVLE-AVNNGLDGRIVRVGNLTSPYNGRWHXRNIKTNRFSXVXNDLLQLDCI 288
>pdb|2VVT|A Chain A, Glutamate Racemase (Muri) From E. Faecalis In Complex With
A 9-Benzyl Purine Inhibitor
pdb|2VVT|B Chain B, Glutamate Racemase (Muri) From E. Faecalis In Complex With
A 9-Benzyl Purine Inhibitor
Length = 290
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 111 GTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK 160
G L +LK LK +R++Y A Y + + + + W D++ K
Sbjct: 35 GGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEMADFLLK 84
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 12/132 (9%)
Query: 7 RVCVTGGTGFIASWLIMRLLDH--GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLR 64
++ VTGG GFI S I +L+ + V + N KDL R
Sbjct: 5 KLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLE-------DDPRYT 57
Query: 65 IFHADLSHPDGFDAAIAGCTGVLHVA--TPVDFEDKEPEEVITQRAINGTLGILKSCLKS 122
D++ + + GV+H+A + VD PE + I GT +L+S +
Sbjct: 58 FVKGDVADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVI-GTYTLLESIRRE 116
Query: 123 GTVKRVVYTSSN 134
R V+ S++
Sbjct: 117 NPEVRFVHVSTD 128
>pdb|3GEC|A Chain A, Crystal Structure Of A Tandem Pas Domain Fragment Of
Drosophila Period
Length = 312
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 71 SHPDGFDAAIAGCTGVLHV--ATPVDFEDKEPEEVITQR----AINGTLGILKSCLKSGT 124
+ PD + ++ T +L V ATP+ K P+E+++Q+ AI T + S + S
Sbjct: 125 ARPDNY--MVSNGTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAA 182
Query: 125 VKRVVYTSSN-----AAVFYNDKDVDMMDETF 151
V + Y + FY+ +D+ +M ET+
Sbjct: 183 VSALGYLPQDLIGRSIMDFYHHEDLSVMKETY 214
>pdb|2JFO|A Chain A, Crystal Structure Of Enterococcus Faecalis Glutamate
Racemase In Complex With D- And L-Glutamate
pdb|2JFO|B Chain B, Crystal Structure Of Enterococcus Faecalis Glutamate
Racemase In Complex With D- And L-Glutamate
pdb|2JFP|A Chain A, Crystal Structure Of Enterococcus Faecalis Glutamate
Racemase In Complex With D-Glutamate
pdb|2JFP|B Chain B, Crystal Structure Of Enterococcus Faecalis Glutamate
Racemase In Complex With D-Glutamate
Length = 293
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 111 GTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK 160
G L +LK LK +R++Y A Y + + + + W D++ K
Sbjct: 35 GGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEMADFLLK 84
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From
Salmonella Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From
Salmonella Typhi
Length = 359
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 3 EGKGRVCVTGGTGFIASWLIMRLLDHG 29
+GK RV VTG TGF SWL + L + G
Sbjct: 8 QGK-RVFVTGHTGFKGSWLSLWLTEMG 33
>pdb|2QP3|A Chain A, Identification And Characterization Of Two Amino Acids
Critical For The Substrate Inhibition Of Sult2a1
Length = 284
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 130 YTSSNAAVFY---NDKDVDMMDETFWSDVDYIRKLDSWGKSY 168
+ SS A V Y N +DV + FW ++ +I+K SW + +
Sbjct: 108 FFSSKAKVIYLMRNPRDVLVSGYFFWKNIKFIKKPKSWEEYF 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,545,073
Number of Sequences: 62578
Number of extensions: 308045
Number of successful extensions: 994
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 938
Number of HSP's gapped (non-prelim): 65
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)