BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025661
(249 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q02060|PSBS_SPIOL Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea
GN=PSBS PE=1 SV=1
Length = 274
Score = 281 bits (719), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 181/284 (63%), Positives = 206/284 (72%), Gaps = 46/284 (16%)
Query: 1 MAQTMLLM-SGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSS 59
MAQ MLLM GVST++ +LKR++L+ Q Q ++PK + SN + +SSSS
Sbjct: 1 MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPK-------SSTSNLFFSPLPSSSSS 53
Query: 60 K--AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 117
F T+ALFKSK KAP K +K K KVEDG+FGTSGG GFTK+NELFVGRVAMIGFA
Sbjct: 54 SSTVFKTLALFKSKAKAPKKVEK--PKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFA 111
Query: 118 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 177
ASLLGEGITGKGIL+QLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVDEP
Sbjct: 112 ASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEPT-- 169
Query: 178 TGLGGAVIPPGKGLRSALGLKEG--------------------------------GKGAL 205
TGL AVIPPGK +RSALGLK GKGAL
Sbjct: 170 TGLEKAVIPPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGAL 229
Query: 206 AQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 249
AQLNIETG+PINEIEPLVL NV+FFF+AA+NPGTGKF+TD++EE
Sbjct: 230 AQLNIETGVPINEIEPLVLLNVVFFFIAAINPGTGKFITDDEEE 273
>sp|Q9SMB4|PSBS_TOBAC Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum
GN=PSBS PE=2 SV=1
Length = 274
Score = 259 bits (661), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 177/281 (62%), Positives = 198/281 (70%), Gaps = 39/281 (13%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTMLL + ++SLV + L+PKP S L + +A+A++SS
Sbjct: 1 MAQTMLLTANAKVDLR---SKESLV----ERLKPKPLSSFFLPSLPLKYPSASASASSHF 53
Query: 61 AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 120
+TVALFKSK KAP K + K KVEDGIFGTSGG GFTKQNELFVGRVAMIGFAASL
Sbjct: 54 TSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 113
Query: 121 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 180
LGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGAL DRGKF+D+P PTGL
Sbjct: 114 LGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGL 173
Query: 181 GGAVIPPGKGLRSALGLKEG--------------------------------GKGALAQL 208
AVIPPGKG +SALGL EG GKGALAQL
Sbjct: 174 DKAVIPPGKGFKSALGLSEGGPLFEFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQL 233
Query: 209 NIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 249
N ETG+PINEIEPL+LFN++FFFVAA+NPGTGKFVTDE+EE
Sbjct: 234 NFETGVPINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 274
>sp|Q9XF91|PSBS_ARATH Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis
thaliana GN=PSBS PE=1 SV=1
Length = 265
Score = 247 bits (631), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 176/282 (62%), Positives = 193/282 (68%), Gaps = 51/282 (18%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTMLL SGV+ H + ++ + +PK H +F LS S A S +
Sbjct: 1 MAQTMLLTSGVTAGH--------FLRNKSPLAQPK--VHHLF--LSGNS--PVALPSRRQ 46
Query: 61 AFSTVALFKSKTKAPPKTKKVES-KPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS 119
+F +ALFK KTKA KKVE K KVEDGIFGTSGG GFTK NELFVGRVAMIGFAAS
Sbjct: 47 SFVPLALFKPKTKA--APKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAAS 104
Query: 120 LLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTG 179
LLGE +TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD+P PTG
Sbjct: 105 LLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTG 162
Query: 180 LGGAVIPPGKGLRSALGLKEG--------------------------------GKGALAQ 207
L AVIPPGK +RSALGLKE GKGALAQ
Sbjct: 163 LEKAVIPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQ 222
Query: 208 LNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 249
LNIETGIPI +IEPLVL NV FFF AA+NPG GKF+TD+ EE
Sbjct: 223 LNIETGIPIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264
>sp|P54773|PSBS_SOLLC Photosystem II 22 kDa protein, chloroplastic OS=Solanum
lycopersicum GN=PSBS PE=3 SV=1
Length = 276
Score = 233 bits (593), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 178/288 (61%), Positives = 197/288 (68%), Gaps = 51/288 (17%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTMLL + ++SLV + L+PKP S L L +++ +SSSK
Sbjct: 1 MAQTMLLTANAKVDLR---SKESLV----ERLKPKPLSSLFLPSLPLRFSSSSTNASSSK 53
Query: 61 AFST-VALFKSKTK------APPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAM 113
ST VALFKSK K APPK K+ KVEDGIFGTSGG GFTKQNELFVGRVAM
Sbjct: 54 FTSTTVALFKSKAKAPPKKVAPPKEKQ-----KVEDGIFGTSGGIGFTKQNELFVGRVAM 108
Query: 114 IGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDE 173
IGFAASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRGKFVD+
Sbjct: 109 IGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDD 168
Query: 174 PDEPTGLGGAVIPPGKGLRSALGLKEG--------------------------------G 201
P PTGL AVIPPGK +SALGL EG G
Sbjct: 169 PTPPTGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITG 228
Query: 202 KGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 249
KGALAQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+
Sbjct: 229 KGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276
>sp|Q9FPP4|PSBS_SOLSG Photosystem II 22 kDa protein, chloroplastic OS=Solanum
sogarandinum GN=PSBS PE=2 SV=1
Length = 276
Score = 229 bits (583), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 175/288 (60%), Positives = 194/288 (67%), Gaps = 51/288 (17%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTMLL + ++SLV + L+PKP S L L ++ SSSK
Sbjct: 1 MAQTMLLTANAKVDLR---SKESLV----ERLKPKPLSSLFLPSLPLRFSSSTTNFSSSK 53
Query: 61 AFST-VALFKSKTK------APPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAM 113
ST VALFKSK K APPK K+ KVEDGIFGTSGG GFTKQNELFVGRVAM
Sbjct: 54 FTSTTVALFKSKAKAPPKKVAPPKEKQ-----KVEDGIFGTSGGIGFTKQNELFVGRVAM 108
Query: 114 IGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDE 173
IGFAASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRG+F+D+
Sbjct: 109 IGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDD 168
Query: 174 PDEPTGLGGAVIPPGKGLRSALGLKEG--------------------------------G 201
P TGL AVIPPGK +SALGL EG G
Sbjct: 169 PAPATGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITG 228
Query: 202 KGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 249
KGALAQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+
Sbjct: 229 KGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276
>sp|P48367|YCF17_CYAPA Uncharacterized protein ycf17 OS=Cyanophora paradoxa GN=ycf17 PE=3
SV=1
Length = 49
Score = 37.7 bits (86), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 131
+GFT E + GR+AM+GF A+LL E +TG+G L
Sbjct: 10 WGFTSGAENWNGRLAMLGFIAALLTESLTGQGTL 43
>sp|P51355|YCF17_PORPU Uncharacterized protein ycf17 OS=Porphyra purpurea GN=ycf17 PE=3
SV=1
Length = 48
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 131
+GFT E + GR AMIGF A + E +TGKG+L
Sbjct: 8 WGFTDSAETWNGRFAMIGFMAVIFIELVTGKGLL 41
>sp|Q3MCT9|HEMH_ANAVT Ferrochelatase OS=Anabaena variabilis (strain ATCC 29413 / PCC
7937) GN=hemH PE=3 SV=1
Length = 388
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 95 SGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 136
S +G T E++ GR+AM+GF A L+ E +TG+G+L + L
Sbjct: 346 SWEWGMTSSAEVWNGRIAMLGFIA-LIIELVTGQGLLHMIGL 386
>sp|Q8YQR8|HEMH_NOSS1 Ferrochelatase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=hemH
PE=3 SV=1
Length = 388
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 95 SGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 136
S +G T E++ GR+AM+GF A L+ E +TG+G+L + L
Sbjct: 346 SWEWGMTSSAEVWNGRIAMLGFIA-LIIELVTGQGLLHMIGL 386
>sp|B2J9P0|HEMH_NOSP7 Ferrochelatase OS=Nostoc punctiforme (strain ATCC 29133 / PCC
73102) GN=hemH PE=3 SV=1
Length = 388
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 20/104 (19%)
Query: 34 PKPFSHLMF-NPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIF 92
P P +H +F N L+ L A + S S A K K P+ +
Sbjct: 302 PAPNTHPVFINALA--ELVIDALKNPSFKLSQAAQMKKMVKMYPQER------------- 346
Query: 93 GTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 136
+G T E++ GR+AM+GF A L+ E ITG G L + L
Sbjct: 347 ---WEWGLTTSAEVWNGRIAMLGFIA-LIIELITGHGFLHMIGL 386
>sp|Q3ALP2|HEMH_SYNSC Ferrochelatase OS=Synechococcus sp. (strain CC9605) GN=hemH PE=3
SV=1
Length = 391
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 136
+G+ +E++ GR+AM+GF+A LL E I+G+G L L L
Sbjct: 353 WGWNNSSEVWNGRLAMVGFSAFLL-ELISGQGPLHALGL 390
>sp|P27516|CBR_DUNBA Carotene biosynthesis-related protein CBR, chloroplastic
OS=Dunaliella bardawil GN=CBR PE=1 SV=1
Length = 172
Score = 35.0 bits (79), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTL 157
GF+ E+ GR+AM+GF A+L E TG+ +L QL + + + L F+LF+
Sbjct: 71 MGFSGAPEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTL-------IALTFVLFSA 123
Query: 158 LGAIGALGDR 167
I A R
Sbjct: 124 ASLIPAFARR 133
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 100 FTKQNELFVGRVAMIGFAASLLGEGITG 127
FT E+ GR AMIGFAA L+ EGI G
Sbjct: 141 FTPDAEMTNGRFAMIGFAAMLVYEGIQG 168
>sp|Q8DGU6|HEMH_THEEB Ferrochelatase OS=Thermosynechococcus elongatus (strain BP-1)
GN=hemH PE=3 SV=2
Length = 388
Score = 34.7 bits (78), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 16/78 (20%)
Query: 67 LFKSKTKAPPKT--------KKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAA 118
L K APP+T K+V+ P+ +G T E + GR+AM+GF A
Sbjct: 318 LVKEALAAPPRTFAEVNQSRKRVKLYPQ-------ERWEWGMTSAAERWNGRLAMLGFLA 370
Query: 119 SLLGEGITGKGILAQLNL 136
L+ E I+G+G L L L
Sbjct: 371 -LMIELISGQGPLHMLGL 387
>sp|Q1XDD2|YCF17_PORYE Uncharacterized protein ycf17 OS=Porphyra yezoensis GN=ycf17 PE=3
SV=1
Length = 48
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 136
+GFT E + GR AMIGF + + E +TG+G+L + +
Sbjct: 8 WGFTDSAETWNGRFAMIGFISVIFIEVVTGQGLLYLIGM 46
>sp|Q7U5G0|HEMH_SYNPX Ferrochelatase OS=Synechococcus sp. (strain WH8102) GN=hemH PE=3
SV=1
Length = 391
Score = 34.3 bits (77), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 136
+G+ +E++ GR+AM+GF+A LL E I+G G L L L
Sbjct: 353 WGWNNSSEVWNGRLAMLGFSAFLL-ELISGHGPLHALGL 390
>sp|Q0I8L9|HEMH_SYNS3 Ferrochelatase OS=Synechococcus sp. (strain CC9311) GN=hemH PE=3
SV=1
Length = 391
Score = 33.9 bits (76), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 10/61 (16%)
Query: 76 PKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLN 135
P T K+ + K E +G+ +E++ GR+AMIGF+A LL E I+G G L +
Sbjct: 340 PTTVKLYPQEKWE---------WGWNNSSEVWNGRLAMIGFSAFLL-ELISGHGPLHAVG 389
Query: 136 L 136
L
Sbjct: 390 L 390
>sp|Q5N2B2|HEMH_SYNP6 Ferrochelatase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
SAUG 1402/1) GN=hemH PE=3 SV=1
Length = 387
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 136
+G T E++ GR+AM+GF A LL E +TG+G L L L
Sbjct: 349 WGITLNAEVWNGRIAMLGFLA-LLVELLTGRGPLHALGL 386
>sp|Q31S00|HEMH_SYNE7 Ferrochelatase OS=Synechococcus elongatus (strain PCC 7942) GN=hemH
PE=3 SV=1
Length = 387
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 136
+G T E++ GR+AM+GF A LL E +TG+G L L L
Sbjct: 349 WGITLNAEVWNGRIAMLGFLA-LLVELLTGRGPLHALGL 386
>sp|B1XL79|HEMH_SYNP2 Ferrochelatase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
PR-6) GN=hemH PE=3 SV=1
Length = 386
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 63 STVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLG 122
S L + P+T + PK ++ +G E+ GR+AMIGF A LL
Sbjct: 313 SLANLVTDSLEQCPRTFGQVTHPKENMKMYPQELSWGMNTSAEVLNGRLAMIGFLALLL- 371
Query: 123 EGITGKGIL 131
E I+G+G L
Sbjct: 372 ELISGQGPL 380
>sp|A2C7Q7|HEMH_PROM3 Ferrochelatase OS=Prochlorococcus marinus (strain MIT 9303) GN=hemH
PE=3 SV=1
Length = 391
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 136
+G +E + GR+AM+GFAA LL E I+G G L + L
Sbjct: 353 WGLNTSSEAWNGRIAMLGFAAFLL-ELISGHGPLHAIGL 390
>sp|Q7V6C6|HEMH_PROMM Ferrochelatase OS=Prochlorococcus marinus (strain MIT 9313) GN=hemH
PE=3 SV=1
Length = 391
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 136
+G +E + GR+AM+GFAA LL E I+G G L + L
Sbjct: 353 WGLNTSSEAWNGRIAMLGFAAFLL-ELISGHGPLHAIGL 390
>sp|Q47XX7|PUR4_COLP3 Phosphoribosylformylglycinamidine synthase OS=Colwellia
psychrerythraea (strain 34H / ATCC BAA-681) GN=purL PE=3
SV=2
Length = 1320
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 193 SALGLKEGGKGALAQLNIETGIPINEIEPLVLF 225
+A+ ++ GGK AL Q NIE G+ + E E LF
Sbjct: 162 TAIDIESGGKNALVQANIELGLALAEDEVNYLF 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.137 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,501,215
Number of Sequences: 539616
Number of extensions: 4081066
Number of successful extensions: 11545
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 11489
Number of HSP's gapped (non-prelim): 51
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)