Query 025661
Match_columns 249
No_of_seqs 160 out of 611
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 08:11:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00084 photosystem II subuni 99.5 1.5E-14 3.4E-19 126.7 5.4 53 101-153 135-188 (214)
2 PHA02337 putative high light i 99.3 7.9E-13 1.7E-17 88.8 3.2 32 100-131 1-32 (35)
3 PLN00014 light-harvesting-like 99.1 7.2E-11 1.6E-15 106.9 4.8 59 81-139 132-197 (250)
4 PLN00101 Photosystem I light-h 98.7 1.3E-08 2.7E-13 92.7 4.2 58 102-161 92-152 (250)
5 PLN00084 photosystem II subuni 98.5 2.8E-08 6.2E-13 87.7 1.8 42 192-233 144-194 (214)
6 PLN00097 photosystem I light h 98.5 6.8E-08 1.5E-12 87.7 3.2 34 98-131 79-112 (244)
7 PF00504 Chloroa_b-bind: Chlor 98.4 1.1E-07 2.5E-12 78.1 2.4 34 97-130 25-58 (156)
8 PLN00098 light-harvesting comp 98.4 3E-07 6.5E-12 84.5 5.0 61 101-161 100-161 (267)
9 PLN00048 photosystem I light h 98.4 3.4E-07 7.4E-12 83.8 4.9 31 102-132 86-116 (262)
10 PLN00187 photosystem II light- 98.1 5.5E-06 1.2E-10 77.0 5.6 30 99-128 131-160 (286)
11 PLN00099 light-harvesting comp 98.0 5.3E-06 1.1E-10 75.4 4.2 30 98-127 79-108 (243)
12 PLN00170 photosystem II light- 98.0 8.1E-06 1.8E-10 74.8 5.4 31 100-130 94-124 (255)
13 PLN00025 photosystem II light 98.0 7.1E-06 1.5E-10 75.3 4.7 31 100-130 90-120 (262)
14 PLN00100 light-harvesting comp 97.9 1.4E-05 3E-10 73.0 4.9 29 98-126 70-98 (246)
15 PLN00147 light-harvesting comp 97.9 5.1E-05 1.1E-09 69.4 8.5 30 102-131 84-113 (252)
16 PF00504 Chloroa_b-bind: Chlor 97.9 6.2E-06 1.4E-10 67.9 1.9 28 97-124 129-156 (156)
17 PLN00147 light-harvesting comp 97.8 1.7E-05 3.6E-10 72.6 3.3 41 103-143 202-242 (252)
18 PLN00100 light-harvesting comp 97.8 1.6E-05 3.5E-10 72.6 2.8 41 102-142 161-201 (246)
19 PLN00089 fucoxanthin-chlorophy 97.7 2.6E-05 5.5E-10 69.4 2.5 28 104-131 180-207 (209)
20 PLN00099 light-harvesting comp 97.6 3.6E-05 7.9E-10 70.0 3.3 41 103-143 188-229 (243)
21 PLN00025 photosystem II light 97.6 4E-05 8.6E-10 70.5 2.7 42 102-143 207-248 (262)
22 PLN00101 Photosystem I light-h 97.5 3.3E-05 7.1E-10 70.6 1.5 42 102-143 201-242 (250)
23 PLN00048 photosystem I light h 97.5 6E-05 1.3E-09 69.2 2.7 40 102-141 211-250 (262)
24 PLN00120 fucoxanthin-chlorophy 97.4 0.00011 2.3E-09 65.1 3.5 26 103-128 170-195 (202)
25 PLN00098 light-harvesting comp 97.4 0.00011 2.3E-09 67.8 3.0 40 102-141 216-255 (267)
26 PLN00171 photosystem light-ha 97.4 0.00012 2.5E-09 69.4 3.1 41 103-143 275-315 (324)
27 PLN00097 photosystem I light h 97.4 0.0001 2.3E-09 67.2 2.7 40 102-141 198-237 (244)
28 PLN00187 photosystem II light- 97.4 0.00012 2.6E-09 68.2 3.1 41 102-142 236-276 (286)
29 PLN00171 photosystem light-ha 96.7 0.00066 1.4E-08 64.4 1.3 30 102-131 149-178 (324)
30 PLN00170 photosystem II light- 96.4 0.0014 3E-08 60.3 1.3 34 102-136 222-255 (255)
31 PLN00089 fucoxanthin-chlorophy 96.3 0.0026 5.5E-08 56.8 2.3 33 98-130 72-104 (209)
32 PLN02449 ferrochelatase 95.3 0.0096 2.1E-07 59.1 2.0 31 95-133 455-485 (485)
33 PLN00120 fucoxanthin-chlorophy 93.3 0.011 2.3E-07 52.6 -2.1 27 98-124 61-87 (202)
34 COG3087 FtsN Cell division pro 26.6 43 0.00094 31.7 2.0 23 98-120 198-220 (264)
No 1
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=99.51 E-value=1.5e-14 Score=126.67 Aligned_cols=53 Identities=47% Similarity=0.829 Sum_probs=50.0
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHhh-chhhHHhhhcccCCCcccchhHHHHHH
Q 025661 101 TKQNELFVGRVAMIGFAASLLGEGIT-GKGILAQLNLETGIPIYEAEPLLLFFI 153 (249)
Q Consensus 101 T~~aEl~NGRlAMlGf~a~ll~El~T-GkGiL~Qlg~~~GiPi~~~~plll~~I 153 (249)
++.+|+||||+||+||+++++.|++| |+|+++|+++++|+|+++.++++++|+
T Consensus 135 qK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi~e~E~f~~fFl 188 (214)
T PLN00084 135 QKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVIDEELFAAFFL 188 (214)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcchhhHHHHHHHH
Confidence 57899999999999999999999999 999999999999999999999887665
No 2
>PHA02337 putative high light inducible protein
Probab=99.33 E-value=7.9e-13 Score=88.76 Aligned_cols=32 Identities=41% Similarity=0.560 Sum_probs=30.5
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHhhchhhH
Q 025661 100 FTKQNELFVGRVAMIGFAASLLGEGITGKGIL 131 (249)
Q Consensus 100 FT~~aEl~NGRlAMlGf~a~ll~El~TGkGiL 131 (249)
||+++|+||||+||+||+++++.|+.|||++.
T Consensus 1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~ip 32 (35)
T PHA02337 1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQIIP 32 (35)
T ss_pred CccHHHHHhhHHHHHHHHHHHHHHHHhCCCCC
Confidence 78999999999999999999999999999874
No 3
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=99.10 E-value=7.2e-11 Score=106.93 Aligned_cols=59 Identities=31% Similarity=0.427 Sum_probs=46.0
Q ss_pred cccCCCccCCccCCCCc--cCCc-----cchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccC
Q 025661 81 VESKPKVEDGIFGTSGG--FGFT-----KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETG 139 (249)
Q Consensus 81 pk~~pkved~~fg~s~~--fGFT-----~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~G 139 (249)
|+....-|...|+++.. |.|- +.+|++|||+|||||++++++|++||+|+++|+|...+
T Consensus 132 Pe~s~n~epv~FdtSiiPWWaW~~rf~l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f~~ 197 (250)
T PLN00014 132 PETSSNDEPVLFDTSIIPWWAWVKRFHLPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNFFC 197 (250)
T ss_pred ccccCCCCCceeecccccHHHHHHhccCchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhhhh
Confidence 44444445555988864 3332 45999999999999999999999999999999986433
No 4
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=98.70 E-value=1.3e-08 Score=92.66 Aligned_cols=58 Identities=40% Similarity=0.478 Sum_probs=41.2
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhhchhhHH---hhhcccCCCcccchhHHHHHHHHHHHHHh
Q 025661 102 KQNELFVGRVAMIGFAASLLGEGITGKGILA---QLNLETGIPIYEAEPLLLFFILFTLLGAI 161 (249)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~---Qlg~~~GiPi~~~~plll~~I~ftLlaAi 161 (249)
+.+|+.||||||+|+++.++.|++|+.|++. |+ +.|...|.+.+..++.|-+.+.+.+
T Consensus 92 r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~p~w~--~ag~~~~~~~~~~l~~ie~~~mg~~ 152 (250)
T PLN00101 92 VQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWY--DAGKAEYFASSSTLFVIEFILFHYV 152 (250)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhcCCCCcCCCccc--cccchhhcccchHHHHHHHHHHHHH
Confidence 5679999999999999999999999999873 43 3555545554444444434444444
No 5
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.54 E-value=2.8e-08 Score=87.66 Aligned_cols=42 Identities=36% Similarity=0.530 Sum_probs=36.2
Q ss_pred h-hhhcccc-------c-CccccccccccccccCCccchhHHHHHHHHHHH
Q 025661 192 R-SALGLKE-------G-GKGALAQLNIETGIPINEIEPLVLFNVIFFFVA 233 (249)
Q Consensus 192 r-~~~g~~~-------~-GkgaLaql~ietgvp~~e~ep~~~~~v~f~~~a 233 (249)
| +|+||.. | |||+|+|+|+|||||+.|+||+++|++.-.+|-
T Consensus 144 RLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi~e~E~f~~fFl~gV~fN 194 (214)
T PLN00084 144 RLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVIDEELFAAFFLFGVFFN 194 (214)
T ss_pred HHHHHHHHHHHHHHHHhCCcchHHHhccccCCcchhhHHHHHHHHHHHhhh
Confidence 6 9999987 5 999999999999999999999987776555443
No 6
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=98.50 E-value=6.8e-08 Score=87.70 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=29.5
Q ss_pred cCCccchhhhhhHHHHHHHHHHHHHHHhhchhhH
Q 025661 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 131 (249)
Q Consensus 98 fGFT~~aEl~NGRlAMlGf~a~ll~El~TGkGiL 131 (249)
+.|.+++|+.||||||+|++++++.|++++.|+.
T Consensus 79 ~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~ 112 (244)
T PLN00097 79 LKWFVQAELMHARWAMLGLAGCVAPELLTKIGMA 112 (244)
T ss_pred HHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcc
Confidence 3344678999999999999999999999998774
No 7
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=98.42 E-value=1.1e-07 Score=78.13 Aligned_cols=34 Identities=38% Similarity=0.522 Sum_probs=30.6
Q ss_pred ccCCccchhhhhhHHHHHHHHHHHHHHHhhchhh
Q 025661 97 GFGFTKQNELFVGRVAMIGFAASLLGEGITGKGI 130 (249)
Q Consensus 97 ~fGFT~~aEl~NGRlAMlGf~a~ll~El~TGkGi 130 (249)
.+.|.+++|++|||+||+|+++.++.|++++.+.
T Consensus 25 ~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~ 58 (156)
T PF00504_consen 25 DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPG 58 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTS
T ss_pred hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCc
Confidence 5668899999999999999999999999998643
No 8
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=98.41 E-value=3e-07 Score=84.46 Aligned_cols=61 Identities=30% Similarity=0.434 Sum_probs=39.6
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHhhchhhHHhh-hcccCCCcccchhHHHHHHHHHHHHHh
Q 025661 101 TKQNELFVGRVAMIGFAASLLGEGITGKGILAQL-NLETGIPIYEAEPLLLFFILFTLLGAI 161 (249)
Q Consensus 101 T~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Ql-g~~~GiPi~~~~plll~~I~ftLlaAi 161 (249)
.+++|+.||||||+|+++.++.|++++.|++... ..+.|...|...+..++.+-+.+++++
T Consensus 100 ~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~~q~~lmG~~ 161 (267)
T PLN00098 100 FAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQMVLMGWA 161 (267)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHHHHHHHHHHHHH
Confidence 3678999999999999999999999998886522 123444434333333333333344444
No 9
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=98.39 E-value=3.4e-07 Score=83.79 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=28.6
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhhchhhHH
Q 025661 102 KQNELFVGRVAMIGFAASLLGEGITGKGILA 132 (249)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~ 132 (249)
+++|+.||||||+|++++++.|+++++|++.
T Consensus 86 r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~ 116 (262)
T PLN00048 86 AYGEVINGRFAMLGAAGAIAPEILGKAGLIP 116 (262)
T ss_pred HHHHhhcchHHHHHHhhHHHHHHhccCCccc
Confidence 5679999999999999999999999998874
No 10
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=98.07 E-value=5.5e-06 Score=76.96 Aligned_cols=30 Identities=33% Similarity=0.364 Sum_probs=27.1
Q ss_pred CCccchhhhhhHHHHHHHHHHHHHHHhhch
Q 025661 99 GFTKQNELFVGRVAMIGFAASLLGEGITGK 128 (249)
Q Consensus 99 GFT~~aEl~NGRlAMlGf~a~ll~El~TGk 128 (249)
-|.+++|++||||||+|+++.++.|+++|.
T Consensus 131 ~r~REaELiHGRwAMLAvaG~lvpEll~G~ 160 (286)
T PLN00187 131 QRFRECELIHGRWAMLATLGALSVEALTGV 160 (286)
T ss_pred HHHHHHHhhhhHHHHHHhhchhhHHhccCC
Confidence 456899999999999999999999999764
No 11
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=98.01 E-value=5.3e-06 Score=75.39 Aligned_cols=30 Identities=27% Similarity=0.261 Sum_probs=25.4
Q ss_pred cCCccchhhhhhHHHHHHHHHHHHHHHhhc
Q 025661 98 FGFTKQNELFVGRVAMIGFAASLLGEGITG 127 (249)
Q Consensus 98 fGFT~~aEl~NGRlAMlGf~a~ll~El~TG 127 (249)
+.|.+++|+.||||||+|+++.++.|+++.
T Consensus 79 ~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 79 LERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred HHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 344467899999999999999999999753
No 12
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=98.01 E-value=8.1e-06 Score=74.81 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=27.1
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHhhchhh
Q 025661 100 FTKQNELFVGRVAMIGFAASLLGEGITGKGI 130 (249)
Q Consensus 100 FT~~aEl~NGRlAMlGf~a~ll~El~TGkGi 130 (249)
+.+++|+.||||||+|++++++.|++||...
T Consensus 94 ~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w 124 (255)
T PLN00170 94 WYREAELIHGRWAMAAVVGIFVGQAWSGIPW 124 (255)
T ss_pred HHHHHHhhccHHHHHHHHhhhhHHHccCCCh
Confidence 3456899999999999999999999998754
No 13
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=97.99 E-value=7.1e-06 Score=75.34 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=27.6
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHhhchhh
Q 025661 100 FTKQNELFVGRVAMIGFAASLLGEGITGKGI 130 (249)
Q Consensus 100 FT~~aEl~NGRlAMlGf~a~ll~El~TGkGi 130 (249)
+.+++|+.||||||+|++++++.|++++.|+
T Consensus 90 ~~re~El~hGR~AMLa~~G~i~~e~l~~~g~ 120 (262)
T PLN00025 90 RNRELEVIHARWAMLGALGCVTPELLAKNGV 120 (262)
T ss_pred HHHHHHHhccHHHHHHHhhhhhHHHhhcCCc
Confidence 3456899999999999999999999998776
No 14
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=97.90 E-value=1.4e-05 Score=72.97 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=25.1
Q ss_pred cCCccchhhhhhHHHHHHHHHHHHHHHhh
Q 025661 98 FGFTKQNELFVGRVAMIGFAASLLGEGIT 126 (249)
Q Consensus 98 fGFT~~aEl~NGRlAMlGf~a~ll~El~T 126 (249)
+.|.+++|+.||||||+|+++.++.|+++
T Consensus 70 ~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 70 LPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred HHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 34456789999999999999999999864
No 15
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=97.89 E-value=5.1e-05 Score=69.41 Aligned_cols=30 Identities=37% Similarity=0.405 Sum_probs=26.9
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhhchhhH
Q 025661 102 KQNELFVGRVAMIGFAASLLGEGITGKGIL 131 (249)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL 131 (249)
+++|+.|||+||+|+++.++.|+++..|+.
T Consensus 84 r~aElkhGR~AMlA~~G~l~~e~~~~~g~~ 113 (252)
T PLN00147 84 VQAELVHSRFAMAGVAGILFTDLLRVTGIR 113 (252)
T ss_pred HHHHhhccHHHHHHHhhhhHHHHhccCCCc
Confidence 567999999999999999999999887753
No 16
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=97.87 E-value=6.2e-06 Score=67.87 Aligned_cols=28 Identities=36% Similarity=0.443 Sum_probs=24.5
Q ss_pred ccCCccchhhhhhHHHHHHHHHHHHHHH
Q 025661 97 GFGFTKQNELFVGRVAMIGFAASLLGEG 124 (249)
Q Consensus 97 ~fGFT~~aEl~NGRlAMlGf~a~ll~El 124 (249)
.+.+++.+|++|||+||||+++.+++|.
T Consensus 129 ~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 129 EKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp SHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4667889999999999999999999873
No 17
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=97.78 E-value=1.7e-05 Score=72.56 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=35.8
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCCcc
Q 025661 103 QNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY 143 (249)
Q Consensus 103 ~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiPi~ 143 (249)
..|+.|||+||+++++.+++|++||+|+++++..-.-.|+.
T Consensus 202 ~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~ 242 (252)
T PLN00147 202 LKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWH 242 (252)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCccc
Confidence 46999999999999999999999999999998765556644
No 18
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=97.75 E-value=1.6e-05 Score=72.58 Aligned_cols=41 Identities=32% Similarity=0.386 Sum_probs=35.7
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCCc
Q 025661 102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPI 142 (249)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiPi 142 (249)
+..|+-|||+||++|++.+.++++||+|.++++......|.
T Consensus 161 K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~ 201 (246)
T PLN00100 161 KVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPG 201 (246)
T ss_pred HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCc
Confidence 46899999999999999999999999999999875455553
No 19
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=97.66 E-value=2.6e-05 Score=69.38 Aligned_cols=28 Identities=39% Similarity=0.599 Sum_probs=26.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhchhhH
Q 025661 104 NELFVGRVAMIGFAASLLGEGITGKGIL 131 (249)
Q Consensus 104 aEl~NGRlAMlGf~a~ll~El~TGkGiL 131 (249)
+|+.|||+||+|+++.+..|++||+|++
T Consensus 180 ~El~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 180 KELKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 5999999999999999999999999985
No 20
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=97.64 E-value=3.6e-05 Score=70.01 Aligned_cols=41 Identities=24% Similarity=0.365 Sum_probs=35.0
Q ss_pred chhhhhhHHHHHHHHHHHHHH-HhhchhhHHhhhcccCCCcc
Q 025661 103 QNELFVGRVAMIGFAASLLGE-GITGKGILAQLNLETGIPIY 143 (249)
Q Consensus 103 ~aEl~NGRlAMlGf~a~ll~E-l~TGkGiL~Qlg~~~GiPi~ 143 (249)
..|+-|||+||+++++.+++| ++||+|+++++..-...|+.
T Consensus 188 ~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~ 229 (243)
T PLN00099 188 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 229 (243)
T ss_pred HHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCcc
Confidence 479999999999999999999 57899999998765555644
No 21
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=97.58 E-value=4e-05 Score=70.51 Aligned_cols=42 Identities=31% Similarity=0.382 Sum_probs=37.1
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCCcc
Q 025661 102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY 143 (249)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiPi~ 143 (249)
+..|+.|||+||+++++.+++|++||+|.++++..-...|+.
T Consensus 207 k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~ 248 (262)
T PLN00025 207 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVA 248 (262)
T ss_pred HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccc
Confidence 467999999999999999999999999999998766666644
No 22
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=97.54 E-value=3.3e-05 Score=70.62 Aligned_cols=42 Identities=33% Similarity=0.474 Sum_probs=36.1
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCCcc
Q 025661 102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY 143 (249)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiPi~ 143 (249)
+..|+-|||+||+++++.++++++||+|.++++..-...|+.
T Consensus 201 k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~ 242 (250)
T PLN00101 201 KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWH 242 (250)
T ss_pred HHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcc
Confidence 357999999999999999999999999999998655555543
No 23
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=97.50 E-value=6e-05 Score=69.24 Aligned_cols=40 Identities=28% Similarity=0.340 Sum_probs=34.4
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCC
Q 025661 102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP 141 (249)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiP 141 (249)
+..|+.|||+||+++++.+++|++||+|.++++..-.-.|
T Consensus 211 k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP 250 (262)
T PLN00048 211 KLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADP 250 (262)
T ss_pred HHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCc
Confidence 3579999999999999999999999999999886444444
No 24
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=97.44 E-value=0.00011 Score=65.08 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=24.0
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhhch
Q 025661 103 QNELFVGRVAMIGFAASLLGEGITGK 128 (249)
Q Consensus 103 ~aEl~NGRlAMlGf~a~ll~El~TGk 128 (249)
..|+.|||+||||+++.+..|.++|.
T Consensus 170 ~~EL~NGRLAMiai~G~~~qe~l~g~ 195 (202)
T PLN00120 170 AIELNQGRAAQMGILALMVHEQLGVE 195 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 46999999999999999999999885
No 25
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=97.39 E-value=0.00011 Score=67.84 Aligned_cols=40 Identities=28% Similarity=0.414 Sum_probs=34.7
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCC
Q 025661 102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP 141 (249)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiP 141 (249)
+..|+-|||+||+++++.++++.+||+|+++++..-...|
T Consensus 216 k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP 255 (267)
T PLN00098 216 RTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADP 255 (267)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCc
Confidence 3479999999999999999999999999999986544444
No 26
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=97.38 E-value=0.00012 Score=69.40 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=35.4
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCCcc
Q 025661 103 QNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY 143 (249)
Q Consensus 103 ~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiPi~ 143 (249)
..|+-|||+||+++++.+++|.+||+|.++++......|..
T Consensus 275 ~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~ 315 (324)
T PLN00171 275 VKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLH 315 (324)
T ss_pred HHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccc
Confidence 46999999999999999999999999999988755555544
No 27
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=97.38 E-value=0.0001 Score=67.24 Aligned_cols=40 Identities=30% Similarity=0.346 Sum_probs=34.8
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCC
Q 025661 102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP 141 (249)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiP 141 (249)
+.+|+-|||+||+++++.++++.+||+|.++++..-...|
T Consensus 198 k~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP 237 (244)
T PLN00097 198 KLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADP 237 (244)
T ss_pred HHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCc
Confidence 3589999999999999999999999999999986544444
No 28
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=97.38 E-value=0.00012 Score=68.22 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=35.2
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCCc
Q 025661 102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPI 142 (249)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiPi 142 (249)
+..|+.|||+||+++++.++++.+||+|.++.|..-...|.
T Consensus 236 k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hladp~ 276 (286)
T PLN00187 236 QLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 276 (286)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcc
Confidence 35799999999999999999999999999988865555553
No 29
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=96.69 E-value=0.00066 Score=64.38 Aligned_cols=30 Identities=20% Similarity=0.172 Sum_probs=26.7
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhhchhhH
Q 025661 102 KQNELFVGRVAMIGFAASLLGEGITGKGIL 131 (249)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL 131 (249)
+++|+.||||||+|+++.++.|++++.|..
T Consensus 149 reaELkHGR~AMLA~~G~lv~e~l~~~g~~ 178 (324)
T PLN00171 149 FNFEILHARWAMLAALGVVIPEVLDLFGAV 178 (324)
T ss_pred HHHHhccchHHHHHHhhHHHHHHhccCCcc
Confidence 457999999999999999999999877654
No 30
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=96.37 E-value=0.0014 Score=60.33 Aligned_cols=34 Identities=29% Similarity=0.315 Sum_probs=30.0
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhc
Q 025661 102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 136 (249)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~ 136 (249)
+..|+-|||+||+++++.+++- .||+|.|+.+++
T Consensus 222 k~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~~ 255 (255)
T PLN00170 222 KLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALGL 255 (255)
T ss_pred HHHHHhhhHHHHHHHHhHheee-ccCCCchhhhcC
Confidence 5689999999999999987766 799999998863
No 31
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=96.26 E-value=0.0026 Score=56.80 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=27.7
Q ss_pred cCCccchhhhhhHHHHHHHHHHHHHHHhhchhh
Q 025661 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGI 130 (249)
Q Consensus 98 fGFT~~aEl~NGRlAMlGf~a~ll~El~TGkGi 130 (249)
+-|.+++|+.|||+||+++++.++.|.++.-|.
T Consensus 72 ~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~ 104 (209)
T PLN00089 72 LPWFRESELKHGRAAMLAVAGFIAPDFVRIPGE 104 (209)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCc
Confidence 345578999999999999999999999875553
No 32
>PLN02449 ferrochelatase
Probab=95.26 E-value=0.0096 Score=59.08 Aligned_cols=31 Identities=35% Similarity=0.378 Sum_probs=28.1
Q ss_pred CCccCCccchhhhhhHHHHHHHHHHHHHHHhhchhhHHh
Q 025661 95 SGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQ 133 (249)
Q Consensus 95 s~~fGFT~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Q 133 (249)
.|.|||++ +||+||++.++.|++||+|.+++
T Consensus 455 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 485 (485)
T PLN02449 455 VWEWGWTK--------AAMLAVLLLLVLEVTSGFGNLHQ 485 (485)
T ss_pred hhhhcccc--------hHHHHHHHHHHHHHHcCCCcCCC
Confidence 57899998 99999999999999999998763
No 33
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=93.34 E-value=0.011 Score=52.58 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=24.3
Q ss_pred cCCccchhhhhhHHHHHHHHHHHHHHH
Q 025661 98 FGFTKQNELFVGRVAMIGFAASLLGEG 124 (249)
Q Consensus 98 fGFT~~aEl~NGRlAMlGf~a~ll~El 124 (249)
+-+.+.+|+.|||+||+++++.++.|.
T Consensus 61 ~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 61 FDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred HHHHHHHHhhcccHHHHhhccceeecc
Confidence 455678999999999999999999996
No 34
>COG3087 FtsN Cell division protein [Cell division and chromosome partitioning]
Probab=26.57 E-value=43 Score=31.66 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=17.9
Q ss_pred cCCccchhhhhhHHHHHHHHHHH
Q 025661 98 FGFTKQNELFVGRVAMIGFAASL 120 (249)
Q Consensus 98 fGFT~~aEl~NGRlAMlGf~a~l 120 (249)
|.=..++|..-+|+||+||=+=+
T Consensus 198 Fk~~~qAE~~rA~LAmlG~sskI 220 (264)
T COG3087 198 FKTAEQAESVRAQLAMLGISSKI 220 (264)
T ss_pred cccHHHHHHHHHHHHhcccccee
Confidence 33346899999999999987643
Done!