Query 025661
Match_columns 249
No_of_seqs 160 out of 611
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 14:53:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_2 LHCA2, type II chloroph 98.4 1.8E-07 6.1E-12 84.5 5.7 35 97-131 98-132 (269)
2 2wsc_4 Chlorophyll A-B binding 98.3 5.4E-08 1.8E-12 86.9 -0.7 36 97-132 87-122 (251)
3 2wsc_3 LHCA3, type II chloroph 98.2 3.1E-08 1E-12 89.7 -5.0 33 99-131 97-129 (276)
4 2bhw_A Chlorophyll A-B binding 98.2 6.2E-07 2.1E-11 79.0 2.9 43 101-143 176-218 (232)
5 3pl9_A Chlorophyll A-B binding 98.2 8.8E-07 3E-11 79.2 3.4 31 98-128 89-119 (243)
6 3pl9_A Chlorophyll A-B binding 98.1 1.9E-06 6.6E-11 77.1 3.6 42 100-141 192-233 (243)
7 2wsc_2 LHCA2, type II chloroph 97.9 1.2E-06 4.3E-11 79.0 -0.4 44 98-141 214-258 (269)
8 2wsc_3 LHCA3, type II chloroph 97.9 1.7E-06 5.9E-11 78.3 -0.1 44 99-142 222-265 (276)
9 2wsc_1 AT3G54890, LHCA1; photo 97.7 4.2E-06 1.4E-10 74.5 0.2 44 100-143 186-230 (241)
10 2wsc_1 AT3G54890, LHCA1; photo 97.7 5.6E-06 1.9E-10 73.7 -0.4 30 98-127 80-109 (241)
11 2wsc_4 Chlorophyll A-B binding 97.3 3.1E-05 1.1E-09 69.1 0.2 41 102-143 201-241 (251)
12 2bhw_A Chlorophyll A-B binding 97.0 0.00018 6.2E-09 63.4 1.7 33 98-130 58-90 (232)
No 1
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=98.44 E-value=1.8e-07 Score=84.49 Aligned_cols=35 Identities=37% Similarity=0.454 Sum_probs=31.9
Q ss_pred ccCCccchhhhhhHHHHHHHHHHHHHHHhhchhhH
Q 025661 97 GFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 131 (249)
Q Consensus 97 ~fGFT~~aEl~NGRlAMlGf~a~ll~El~TGkGiL 131 (249)
.+.|.+++|+.||||||+|+++.++.|++++.|++
T Consensus 98 ~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 98 SLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp CCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred HHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 46777899999999999999999999999988876
No 2
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=98.32 E-value=5.4e-08 Score=86.92 Aligned_cols=36 Identities=42% Similarity=0.529 Sum_probs=33.2
Q ss_pred ccCCccchhhhhhHHHHHHHHHHHHHHHhhchhhHH
Q 025661 97 GFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILA 132 (249)
Q Consensus 97 ~fGFT~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~ 132 (249)
.+.|.+++|++||||||+|+++.++.|+++++|++.
T Consensus 87 ~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~ 122 (251)
T 2wsc_4 87 NLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122 (251)
T ss_dssp CTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSC
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCccC
Confidence 477889999999999999999999999999999874
No 3
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=98.20 E-value=3.1e-08 Score=89.74 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=31.1
Q ss_pred CCccchhhhhhHHHHHHHHHHHHHHHhhchhhH
Q 025661 99 GFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 131 (249)
Q Consensus 99 GFT~~aEl~NGRlAMlGf~a~ll~El~TGkGiL 131 (249)
.|.+++|++||||||+|+++.++.|++++.|++
T Consensus 97 ~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~ 129 (276)
T 2wsc_3 97 KWLAYGEIINGRYAMLGAVGAIAPEILGKAGLI 129 (276)
T ss_dssp THHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred HHHHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence 778899999999999999999999999999876
No 4
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=98.18 E-value=6.2e-07 Score=79.05 Aligned_cols=43 Identities=33% Similarity=0.379 Sum_probs=36.8
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCCcc
Q 025661 101 TKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY 143 (249)
Q Consensus 101 T~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiPi~ 143 (249)
.+.+|+.|||+||+||++.++.|.+||+|+++|+......|..
T Consensus 176 ~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~ 218 (232)
T 2bhw_A 176 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 218 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTT
T ss_pred HHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHH
Confidence 3568999999999999999999999999999998755555543
No 5
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=98.15 E-value=8.8e-07 Score=79.23 Aligned_cols=31 Identities=35% Similarity=0.443 Sum_probs=27.7
Q ss_pred cCCccchhhhhhHHHHHHHHHHHHHHHhhch
Q 025661 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGK 128 (249)
Q Consensus 98 fGFT~~aEl~NGRlAMlGf~a~ll~El~TGk 128 (249)
+.|.+++|++||||||+|+++.++.|+++|-
T Consensus 89 l~r~ReaELkHGRwAMLAvlG~lvpE~l~g~ 119 (243)
T 3pl9_A 89 LQRFRECELIHGRWAMLATLGALTVEGLTGI 119 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHhhhhcchhHHHHHHHHHhHHhhcCc
Confidence 4566899999999999999999999999763
No 6
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=98.06 E-value=1.9e-06 Score=77.07 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=36.0
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCC
Q 025661 100 FTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP 141 (249)
Q Consensus 100 FT~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiP 141 (249)
+.+.+|+.|||+||+|+++.++.|++||+|+++|+..-...|
T Consensus 192 ~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~HladP 233 (243)
T 3pl9_A 192 ILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSDP 233 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHCS
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHHhcCc
Confidence 345799999999999999999999999999999986444444
No 7
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=97.91 E-value=1.2e-06 Score=79.01 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=37.0
Q ss_pred cCCccchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhh-cccCCC
Q 025661 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLN-LETGIP 141 (249)
Q Consensus 98 fGFT~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg-~~~GiP 141 (249)
+.+.+.+|+.|||+||+||++.++.|.+||+|+++++. .-...|
T Consensus 214 ~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP 258 (269)
T 2wsc_2 214 LKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP 258 (269)
T ss_dssp CTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS
T ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc
Confidence 44557789999999999999999999999999999887 434444
No 8
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=97.87 E-value=1.7e-06 Score=78.34 Aligned_cols=44 Identities=25% Similarity=0.246 Sum_probs=31.0
Q ss_pred CCccchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCCc
Q 025661 99 GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPI 142 (249)
Q Consensus 99 GFT~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiPi 142 (249)
-..+.+|+.|||+||+||++.++.|++||+|+++|+..-...|.
T Consensus 222 ~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~ 265 (276)
T 2wsc_3 222 KDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPV 265 (276)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC---------
T ss_pred HHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcc
Confidence 34567899999999999999999999999999998875444453
No 9
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=97.75 E-value=4.2e-06 Score=74.49 Aligned_cols=44 Identities=25% Similarity=0.325 Sum_probs=38.0
Q ss_pred CccchhhhhhHHHHHHHHHHHHHH-HhhchhhHHhhhcccCCCcc
Q 025661 100 FTKQNELFVGRVAMIGFAASLLGE-GITGKGILAQLNLETGIPIY 143 (249)
Q Consensus 100 FT~~aEl~NGRlAMlGf~a~ll~E-l~TGkGiL~Qlg~~~GiPi~ 143 (249)
..+.+|+.|||+||+|+++.++.| ++||+|++++++.-...|..
T Consensus 186 ~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~ 230 (241)
T 2wsc_1 186 ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 230 (241)
T ss_dssp CSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC
T ss_pred HHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccc
Confidence 346789999999999999999999 58999999999876666755
No 10
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=97.65 E-value=5.6e-06 Score=73.70 Aligned_cols=30 Identities=27% Similarity=0.265 Sum_probs=25.9
Q ss_pred cCCccchhhhhhHHHHHHHHHHHHHHHhhc
Q 025661 98 FGFTKQNELFVGRVAMIGFAASLLGEGITG 127 (249)
Q Consensus 98 fGFT~~aEl~NGRlAMlGf~a~ll~El~TG 127 (249)
+-+.+++|+.||||||+++++.++.|+++.
T Consensus 80 ~~~~r~~El~hgR~AMla~~G~~~~e~~~~ 109 (241)
T 2wsc_1 80 LERYKESELIHCRWAMLAVPGILVPEALGY 109 (241)
T ss_dssp HHHSHHHHHHHHHHHTTTSTTSSSTTCCCC
T ss_pred HHHHHHHHHhhchhHHhhhhcccchhhccC
Confidence 445678999999999999999999998654
No 11
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=97.35 E-value=3.1e-05 Score=69.13 Aligned_cols=41 Identities=29% Similarity=0.476 Sum_probs=35.6
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhhchhhHHhhhcccCCCcc
Q 025661 102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY 143 (249)
Q Consensus 102 ~~aEl~NGRlAMlGf~a~ll~El~TGkGiL~Qlg~~~GiPi~ 143 (249)
+..|+.|||+ |+|+++.+++|.+||+|+++++..-...|..
T Consensus 201 k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~ 241 (251)
T 2wsc_4 201 KEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWH 241 (251)
T ss_dssp TTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCC
T ss_pred HHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhh
Confidence 5789999999 9999999999999999999988755555544
No 12
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=97.02 E-value=0.00018 Score=63.38 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=27.9
Q ss_pred cCCccchhhhhhHHHHHHHHHHHHHHHhhchhh
Q 025661 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGI 130 (249)
Q Consensus 98 fGFT~~aEl~NGRlAMlGf~a~ll~El~TGkGi 130 (249)
+.|.+++|+.|||+||+|+++.++.|+++..|+
T Consensus 58 ~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G~ 90 (232)
T 2bhw_A 58 FSKNRELEVIHSRWAMLGALGSVFPELLSRNGV 90 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhccchHHHhhhhhhhHHHhccCCc
Confidence 445578999999999999999999999875443
Done!