Query 025662
Match_columns 249
No_of_seqs 79 out of 81
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 14:54:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025662.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025662hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hjr_A Holliday junction resol 100.0 2.2E-39 7.5E-44 273.0 13.4 147 88-248 1-150 (158)
2 4ep4_A Crossover junction endo 100.0 5.7E-39 1.9E-43 273.0 12.2 151 88-248 1-155 (166)
3 1vhx_A Putative holliday junct 99.0 2.1E-09 7.1E-14 89.2 8.8 106 87-205 2-112 (150)
4 1kcf_A Hypothetical 30.2 KD pr 96.7 0.0023 8E-08 57.4 6.6 151 89-246 41-237 (258)
5 1iv0_A Hypothetical protein; r 95.5 0.12 4.2E-06 39.6 9.7 90 88-194 1-92 (98)
6 3bzc_A TEX; helix-turn-helix, 93.9 0.079 2.7E-06 54.2 6.4 60 87-156 328-390 (785)
7 1nu0_A Hypothetical protein YQ 93.4 0.34 1.2E-05 39.3 8.2 92 88-194 3-95 (138)
8 3psi_A Transcription elongatio 92.3 0.23 7.9E-06 53.1 7.4 83 58-155 491-581 (1219)
9 3psf_A Transcription elongatio 92.3 0.24 8.3E-06 52.1 7.4 83 58-155 494-584 (1030)
10 3r6m_A YEAZ, resuscitation pro 86.9 0.67 2.3E-05 40.0 4.7 94 87-197 1-97 (213)
11 3cpe_A Terminase, DNA packagin 86.1 1.8 6.3E-05 41.7 7.7 63 86-158 418-485 (592)
12 3g25_A Glycerol kinase; IDP007 80.2 3 0.0001 39.2 6.5 27 83-109 1-28 (501)
13 4ehu_A Activator of 2-hydroxyi 73.0 2.1 7.3E-05 36.4 3.0 22 88-109 1-23 (276)
14 3h1q_A Ethanolamine utilizatio 72.5 35 0.0012 28.4 10.5 101 86-198 26-130 (272)
15 2qm1_A Glucokinase; alpha-beta 68.7 12 0.00042 32.1 7.0 60 83-145 1-61 (326)
16 3eno_A Putative O-sialoglycopr 67.8 9.7 0.00033 34.4 6.3 101 86-197 4-114 (334)
17 2gel_A Putative GRAM negative 61.0 17 0.00058 31.1 6.3 92 89-197 2-96 (231)
18 2ivn_A O-sialoglycoprotein end 58.7 27 0.00093 31.1 7.4 20 88-107 1-21 (330)
19 3en9_A Glycoprotease, O-sialog 58.0 31 0.001 32.7 8.1 99 87-196 5-112 (540)
20 2a6a_A Hypothetical protein TM 54.8 18 0.00063 30.9 5.4 94 88-198 12-108 (218)
21 2w40_A Glycerol kinase, putati 53.1 24 0.00082 33.0 6.4 21 89-109 5-26 (503)
22 4e1j_A Glycerol kinase; struct 52.1 27 0.00094 33.0 6.7 31 89-121 27-60 (520)
23 3ll3_A Gluconate kinase; xylul 49.7 30 0.001 32.6 6.5 54 89-144 5-62 (504)
24 1z6r_A MLC protein; transcript 47.9 42 0.0014 30.1 6.9 59 83-145 80-139 (406)
25 1saz_A Probable butyrate kinas 47.3 75 0.0026 28.7 8.6 19 89-107 3-22 (381)
26 1hux_A Activator of (R)-2-hydr 46.2 14 0.00046 32.0 3.3 22 87-108 2-24 (270)
27 3ezw_A Glycerol kinase; glycer 46.2 56 0.0019 30.8 7.8 37 88-126 4-43 (526)
28 2zf5_O Glycerol kinase; hypert 44.7 40 0.0014 31.5 6.4 22 88-109 3-25 (497)
29 2ch5_A NAGK protein; transfera 44.5 44 0.0015 28.9 6.4 24 86-109 4-28 (347)
30 3hz6_A Xylulokinase; xylulose, 42.7 41 0.0014 31.7 6.2 55 89-145 6-64 (511)
31 3ifr_A Carbohydrate kinase, FG 42.5 36 0.0012 32.0 5.8 22 88-109 7-29 (508)
32 3h3n_X Glycerol kinase; ATP-bi 42.4 48 0.0016 31.1 6.6 22 88-109 5-27 (506)
33 1zc6_A Probable N-acetylglucos 41.8 83 0.0028 26.9 7.6 21 89-109 12-33 (305)
34 2p3r_A Glycerol kinase; glycer 41.8 46 0.0016 31.3 6.4 22 88-109 3-25 (510)
35 2dpn_A Glycerol kinase; thermu 35.3 49 0.0017 30.8 5.4 21 89-109 3-24 (495)
36 2itm_A Xylulose kinase, xylulo 35.3 56 0.0019 30.2 5.8 20 90-109 2-22 (484)
37 3l0q_A Xylulose kinase; xlylul 35.0 57 0.0019 31.0 5.9 32 88-121 5-39 (554)
38 3r8e_A Hypothetical sugar kina 32.7 38 0.0013 29.5 4.0 28 82-109 12-41 (321)
39 2d4w_A Glycerol kinase; alpha 32.0 77 0.0026 29.6 6.2 21 89-109 3-24 (504)
40 3vgl_A Glucokinase; ROK family 30.9 99 0.0034 26.8 6.4 21 89-109 3-24 (321)
41 1z05_A Transcriptional regulat 30.5 92 0.0032 28.2 6.3 58 84-145 104-162 (429)
42 3h6e_A Carbohydrate kinase, FG 30.0 52 0.0018 31.0 4.7 55 88-145 6-64 (482)
43 2hoe_A N-acetylglucosamine kin 25.3 64 0.0022 28.8 4.2 26 84-109 83-109 (380)
44 1v54_K IHQ, cytochrome C oxida 24.6 22 0.00076 25.0 0.8 25 176-200 26-55 (56)
45 4gni_A Putative heat shock pro 24.3 57 0.002 29.0 3.7 27 86-116 11-38 (409)
46 3i8b_A Xylulose kinase; strain 24.2 1.8E+02 0.0061 27.4 7.2 52 88-145 5-59 (515)
47 3skq_A Mitochondrial distribut 23.6 34 0.0012 30.6 2.0 50 8-70 100-149 (249)
48 2yhw_A Bifunctional UDP-N-acet 23.3 69 0.0024 27.9 3.9 24 86-109 28-52 (343)
49 2dum_A Hypothetical protein PH 22.2 1.9E+02 0.0064 21.8 5.9 60 135-204 106-165 (170)
50 2e2o_A Hexokinase; acetate and 21.9 1E+02 0.0035 26.1 4.7 22 88-109 2-24 (299)
51 3i33_A Heat shock-related 70 k 21.7 55 0.0019 29.0 3.0 29 85-117 20-49 (404)
52 2ych_A Competence protein PILM 21.7 70 0.0024 28.0 3.7 54 88-145 13-72 (377)
53 2aa4_A Mannac kinase, putative 21.4 1.3E+02 0.0044 25.3 5.1 22 88-109 1-23 (289)
No 1
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=100.00 E-value=2.2e-39 Score=273.01 Aligned_cols=147 Identities=14% Similarity=0.097 Sum_probs=138.7
Q ss_pred ceEEEEcCCCCce-EEEEecCCCCceeeeeeCCCcccccccc--hhhhhhHHHHHHHHHhcCCCCCCEEEEccccCCCCC
Q 025662 88 QWALGIDPDLSGA-LAVLKSDHNGCSAEVFDTPHLPVLVGKR--VRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPYPQD 164 (249)
Q Consensus 88 m~ILGIDPGl~Ga-~avL~~~g~g~~~~v~D~pti~v~~g~~--~R~r~d~~~L~~lL~~~~~p~p~~a~IE~v~~~p~q 164 (249)
|+|||||||++.+ |||++.+++ ..+++++++|++. +.. .|+..+++.|.++|++| .|+.++||++| +++
T Consensus 1 m~ILGIDPGl~~tG~gvi~~~g~--~~~~v~~G~i~t~-~~~~~~Rl~~i~~~l~~~i~~~---~Pd~vaiE~vf--~~~ 72 (158)
T 1hjr_A 1 AIILGIDPGSRVTGYGVIRQVGR--QLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQF---QPDYFAIEQVF--MAK 72 (158)
T ss_dssp CEEEEEECCSSEEEEEEEEEETT--EEEEEEEEEEECC-CSCHHHHHHHHHHHHHHHHHHH---CCSEEEEEECC--CCC
T ss_pred CEEEEEccCCCCeeEEEEEecCC--eEEEEEeeEEECC-CCCHHHHHHHHHHHHHHHHHHc---CCCEEEEeecc--ccc
Confidence 7899999999998 999998776 8999999999987 444 99999999999999999 89999999999 999
Q ss_pred CccceeechhhhHHHHHHHHHcCCceeEeCchhhhhhhcccCCCCChHHHHHHHHHhCCcccccccCCCCCCcccHHHHH
Q 025662 165 GKQGWWSGGFGYGLWIGILVASGFSVVPIPSLTWKNWYGLSGGTSTKDDSRRVASTLFPSLCSQLKRKKDHGTISSPYCI 244 (249)
Q Consensus 165 gvqSaf~~G~a~Gv~~gvLaa~gIPV~eVtP~~WKkav~g~~G~AsKd~sr~ma~~LfP~~~~~l~rkKdhgrADALaIA 244 (249)
|++|++++|++||+++++++..||||.||+|.+|||+++|+ |+|+|+|++.|++++|+..+. +++ |+|||||||
T Consensus 73 n~~s~~~lgqarGv~~~a~~~~~ipv~eytp~~vKkavtG~-G~A~K~qV~~mv~~ll~l~~~----p~~-DaADALAiA 146 (158)
T 1hjr_A 73 NADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGI-GSAEKSQVQHMVRTLLKLPAN----PQA-DAADALAIA 146 (158)
T ss_dssp CTTTHHHHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHTSS-SSCCHHHHHHHHHHHTTCCCC----CSS-CTHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHHHHhhCC-CCCcHHHHHHHHHHHcCCCCC----CCC-CHHHHHHHH
Confidence 99999999999999999999999999999999999999999 999999999999999999765 566 999999999
Q ss_pred hhcc
Q 025662 245 LYHH 248 (249)
Q Consensus 245 ~~h~ 248 (249)
+||+
T Consensus 147 i~h~ 150 (158)
T 1hjr_A 147 ITHC 150 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9995
No 2
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=100.00 E-value=5.7e-39 Score=273.03 Aligned_cols=151 Identities=14% Similarity=0.132 Sum_probs=140.6
Q ss_pred ceEEEEcCCCCce-EEEEecCCCC-ceeeeeeCCCcccccccc--hhhhhhHHHHHHHHHhcCCCCCCEEEEccccCCCC
Q 025662 88 QWALGIDPDLSGA-LAVLKSDHNG-CSAEVFDTPHLPVLVGKR--VRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPYPQ 163 (249)
Q Consensus 88 m~ILGIDPGl~Ga-~avL~~~g~g-~~~~v~D~pti~v~~g~~--~R~r~d~~~L~~lL~~~~~p~p~~a~IE~v~~~p~ 163 (249)
|+|||||||++.+ |||++.++++ ..++++++++|++..+.. .|+..+++.|.++|++| +|+.++||++| ++
T Consensus 1 MrILGIDPGl~~tG~gvi~~~g~~~~~~~~v~~G~I~t~~~~~~~~RL~~I~~~l~~~i~~~---~Pd~vaiE~~F--~~ 75 (166)
T 4ep4_A 1 MVVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERVGRIHARVLEVLHRF---RPEAVAVEEQF--FY 75 (166)
T ss_dssp CEEEEEECCSSEEEEEEEEECSSSSSCEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHH---CCSEEEEECCC--CS
T ss_pred CEEEEEccccCceEEEEEEecCCccceEEEEEeCeEECCCCCCHHHHHHHHHHHHHHHHHHh---CCCEEEEeehh--hc
Confidence 7899999999998 9999987631 058899999999877655 99999999999999999 99999999998 99
Q ss_pred CCccceeechhhhHHHHHHHHHcCCceeEeCchhhhhhhcccCCCCChHHHHHHHHHhCCcccccccCCCCCCcccHHHH
Q 025662 164 DGKQGWWSGGFGYGLWIGILVASGFSVVPIPSLTWKNWYGLSGGTSTKDDSRRVASTLFPSLCSQLKRKKDHGTISSPYC 243 (249)
Q Consensus 164 qgvqSaf~~G~a~Gv~~gvLaa~gIPV~eVtP~~WKkav~g~~G~AsKd~sr~ma~~LfP~~~~~l~rkKdhgrADALaI 243 (249)
+|++|++++|+++|+++++++..||||+||+|++||++++|+ |+|+|+|++.|++++|+..+. ++++|+||||||
T Consensus 76 ~n~~sal~lgqarGv~~la~~~~glpv~eytP~~vKkavtG~-G~A~K~QV~~mV~~lL~l~~~----p~~~DaADALAi 150 (166)
T 4ep4_A 76 RQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGH-GHAAKEEVALMVRGILGLKEA----PRPSHLADALAI 150 (166)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHTCCEEEECHHHHHHHHHSS-TTCCHHHHHHHHHHHTTCSSC----CSSHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHHHHhcCC-CCCCHHHHHHHHHHHhcCCCC----CCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 999999999999999998765 678899999999
Q ss_pred Hhhcc
Q 025662 244 ILYHH 248 (249)
Q Consensus 244 A~~h~ 248 (249)
|+||+
T Consensus 151 Aich~ 155 (166)
T 4ep4_A 151 ALTHA 155 (166)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99996
No 3
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=98.95 E-value=2.1e-09 Score=89.21 Aligned_cols=106 Identities=8% Similarity=-0.042 Sum_probs=86.2
Q ss_pred CceEEEEcCCCCce-EEEEecCCCCceeeeeeCCCcccccccchhhhhhHHHHHHHHHhcCCCCCCEEEEccccCCCCCC
Q 025662 87 SQWALGIDPDLSGA-LAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPYPQDG 165 (249)
Q Consensus 87 ~m~ILGIDPGl~Ga-~avL~~~g~g~~~~v~D~pti~v~~g~~~R~r~d~~~L~~lL~~~~~p~p~~a~IE~v~~~p~qg 165 (249)
.|.|||||||++-+ +||.+..+. . ...+++|.... .|...+++.|.++|++| .|+.++||..+ .. |
T Consensus 2 ~mriLGiDpG~~riGvAv~d~~g~--~--a~p~~~I~~~~---~r~~~~~~~l~~li~~~---~~~~ivVGlP~--~~-n 68 (150)
T 1vhx_A 2 SLRILGLDLGTKTLGVALSDEMGW--T--AQGIETIKINE---AEGDYGLSRLSELIKDY---TIDKIVLGFPK--NM-N 68 (150)
T ss_dssp CEEEEEEEECSSEEEEEEECTTSS--S--EEEEEEEECBG---GGTBCCHHHHHHHHTTS---EEEEEEEECCC--CB-T
T ss_pred CCEEEEEEccCCEEEEEEEECCCC--E--EeeEEEEEcCC---cchHHHHHHHHHHHHHc---CCCEEEEeeee--cC-C
Confidence 48899999999999 999998764 2 23356665321 36788999999999999 89999999975 33 3
Q ss_pred ccceeechhhhHHHHHHHHHcCCceeE----eCchhhhhhhccc
Q 025662 166 KQGWWSGGFGYGLWIGILVASGFSVVP----IPSLTWKNWYGLS 205 (249)
Q Consensus 166 vqSaf~~G~a~Gv~~gvLaa~gIPV~e----VtP~~WKkav~g~ 205 (249)
-++....++.++++..+....++||++ +||.+.|+.+...
T Consensus 69 Gt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~Ts~~Ak~~l~~~ 112 (150)
T 1vhx_A 69 GTVGPRGEASQTFAKVLETTYNVPVVLWDERLTTMAAEKMLIAA 112 (150)
T ss_dssp TBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSCHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHHHhhCCCEEEecCCCCHHHHHHHHHHc
Confidence 345677888899998888888999999 9999999999775
No 4
>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} SCOP: a.140.2.1 c.55.3.7
Probab=96.75 E-value=0.0023 Score=57.42 Aligned_cols=151 Identities=10% Similarity=0.032 Sum_probs=86.1
Q ss_pred eEEEEcCCCCce-EEEEecCCCCceeeeeeCCCccccc--c------cchhhh----hhHHHHHHHHHhcCCCCCCEEEE
Q 025662 89 WALGIDPDLSGA-LAVLKSDHNGCSAEVFDTPHLPVLV--G------KRVRKR----LDAKSMIMLLRSLDAPIGTTAYV 155 (249)
Q Consensus 89 ~ILGIDPGl~Ga-~avL~~~g~g~~~~v~D~pti~v~~--g------~~~R~r----~d~~~L~~lL~~~~~p~p~~a~I 155 (249)
.|++||.|++.- ||.++.++. ....+.+--.+.+.. | ..-... ..+.-+..++..+ .|++++|
T Consensus 41 sIlSID~GikNlAyc~l~~~~~-~~p~l~~W~kl~l~~~~~~~~~~k~~~~p~~~~~~a~~Li~~ll~~~---~pd~vlI 116 (258)
T 1kcf_A 41 RVLGIDLGIKNFSYCFASQNED-SKVIIHNWSVENLTEKNGLDIQWTEDFQPSSMADLSIQLFNTLHEKF---NPHVILM 116 (258)
T ss_dssp SEEEEEECSTTEEEEEEEECTT-SCEEEEEEEEECTTSCCTTCCCCCCCCSHHHHHHHHHHHHHHHHHHH---CCSEEEE
T ss_pred cEEEEecCCCceEEEEEccCCC-CCCeeecceeeccccccccccccccCcChHHHHHHHHHHHHHhhccC---CCCEEEE
Confidence 799999999998 999995421 122233322222211 1 111111 2222233334444 8999999
Q ss_pred ccccCCCCCCcccee-----echhhhHHHHHHHHH----------cCCceeEeCchhhhhhhccc----CCCCChHHHHH
Q 025662 156 EQSIPYPQDGKQGWW-----SGGFGYGLWIGILVA----------SGFSVVPIPSLTWKNWYGLS----GGTSTKDDSRR 216 (249)
Q Consensus 156 E~v~~~p~qgvqSaf-----~~G~a~Gv~~gvLaa----------~gIPV~eVtP~~WKkav~g~----~G~AsKd~sr~ 216 (249)
|++- +.-+ .|+. .++---|.+..+|.. ....|..+.|+...++.... .....|.....
T Consensus 117 ErQr--~Rs~-~s~v~e~~Lrv~ilE~ML~a~l~~~~~~~~~~~~~~~~V~~~~p~~v~~yw~~~~~~~~~~~~Kk~~i~ 193 (258)
T 1kcf_A 117 ERQR--YRSG-IATIPEWTLRVNMLESMLYALHYAEKRNSIEQKIQYPFLLSLSPKSTYSYWASVLNTKASFSKKKSRVQ 193 (258)
T ss_dssp EECC--CCTT-TCCHHHHHHHHHHHHHHHHHHHHHHHHC-------CCEEEECCHHHHHHHHHHHHC-------CCCHHH
T ss_pred eecC--cccC-cccccchhhhHhHHHHHHHHHHHHHHhhcccccccceeEEecCHHHHHHhhhhcccccchhHHHHHHHH
Confidence 9997 4434 3332 223333455555543 23678889999998876421 12346777888
Q ss_pred HHHHhCCccccc--------------ccCCCCCCcccHHHHHhh
Q 025662 217 VASTLFPSLCSQ--------------LKRKKDHGTISSPYCILY 246 (249)
Q Consensus 217 ma~~LfP~~~~~--------------l~rkKdhgrADALaIA~~ 246 (249)
++++++-..... ...+|.||-||+|+-|+.
T Consensus 194 lv~~~L~~~~~~~~~~e~~~~~~~~~~~~~K~DDLaDslLq~la 237 (258)
T 1kcf_A 194 MVKELIDGQKILFENEEALYKWNNGSRVEFKKDDMADSALIASG 237 (258)
T ss_dssp HHHHHHHTTSEEESSHHHHHHHHHCCSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcCcCcHHHHHHHhcccccCcchHHHHHHHHHHHH
Confidence 888887544110 345778999999997753
No 5
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=95.46 E-value=0.12 Score=39.64 Aligned_cols=90 Identities=12% Similarity=-0.055 Sum_probs=54.7
Q ss_pred ceEEEEcCCCCce-EEEEecCCCCceeeeeeCCCcccccccchhhhhhHHHHHHHHHhcCCCCCCEEEEccccCCCCCCc
Q 025662 88 QWALGIDPDLSGA-LAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPYPQDGK 166 (249)
Q Consensus 88 m~ILGIDPGl~Ga-~avL~~~g~g~~~~v~D~pti~v~~g~~~R~r~d~~~L~~lL~~~~~p~p~~a~IE~v~~~p~qgv 166 (249)
|.|||||+|..-. +|+-+..+. +..|.-.+... ....+.+.|.++++++ .++.++|=-...| +|.
T Consensus 1 mriLglD~G~kriGvAvsd~~~~------~A~pl~ti~~~---~~~~~~~~l~~li~e~---~v~~iVvGlP~~m--dGt 66 (98)
T 1iv0_A 1 MRVGALDVGEARIGLAVGEEGVP------LASGRGYLVRK---TLEEDVEALLDFVRRE---GLGKLVVGLPLRT--DLK 66 (98)
T ss_dssp CCEEEEEESSSEEEEEEECSCCS------SCCCEEEEECC---CHHHHHHHHHHHHHHH---TCCEEEEECCCCC--CSS
T ss_pred CcEEEEEeCCCEEEEEEEeCCCC------eeeeeEEEEcc---CcHHHHHHHHHHHHHc---CCCEEEEeeccCC--CCC
Confidence 5799999999999 999876543 33343222111 2457789999999999 7888887654322 222
Q ss_pred cc-eeechhhhHHHHHHHHHcCCceeEeC
Q 025662 167 QG-WWSGGFGYGLWIGILVASGFSVVPIP 194 (249)
Q Consensus 167 qS-af~~G~a~Gv~~gvLaa~gIPV~eVt 194 (249)
.+ ....-+.|+--+ -.. ++||+.+.
T Consensus 67 ~~~~~~~~~~f~~~L--~~~-~lpV~~~D 92 (98)
T 1iv0_A 67 ESAQAGKVLPLVEAL--RAR-GVEVELWD 92 (98)
T ss_dssp SCCCSSTTHHHHHHH--HHT-TCEEEEEC
T ss_pred cCHHHHHHHHHHHHH--hcC-CCCEEEEC
Confidence 21 122113333222 223 89998875
No 6
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=93.91 E-value=0.079 Score=54.21 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=41.4
Q ss_pred CceEEEEcCCC-Cce-EEEEecCCCCceeeee-eCCCcccccccchhhhhhHHHHHHHHHhcCCCCCCEEEEc
Q 025662 87 SQWALGIDPDL-SGA-LAVLKSDHNGCSAEVF-DTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVE 156 (249)
Q Consensus 87 ~m~ILGIDPGl-~Ga-~avL~~~g~g~~~~v~-D~pti~v~~g~~~R~r~d~~~L~~lL~~~~~p~p~~a~IE 156 (249)
...|+|||||. +|+ +|+|+..|. .++.. =||+-+ ..+.+-+.+.|..+|.+| .|++++|=
T Consensus 328 ~~~vlg~dpg~r~g~k~a~vd~~G~--~l~~~~iy~~~~-----~~~~~~~~~~l~~li~~~---~~~~IaIG 390 (785)
T 3bzc_A 328 PRATLGLDPGLRTGVKVAVVDATGK--LLDTATVYPHAP-----KNQWDQTLAVLAALCAKH---QVELIAIG 390 (785)
T ss_dssp SCCEEEEECCSSSCEEEEEECTTSC--EEEEEEECCSGG-----GCCHHHHHHHHHHHHHHH---TCCEEEEE
T ss_pred CCeEEEECCCCcCceEEEEECCCCC--EEEEEEEecCCc-----hhHHHHHHHHHHHHHHHc---CCCEEEEC
Confidence 45799999996 788 999988774 22211 134421 123455677899999999 88888874
No 7
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=93.41 E-value=0.34 Score=39.35 Aligned_cols=92 Identities=14% Similarity=-0.013 Sum_probs=55.5
Q ss_pred ceEEEEcCCCCce-EEEEecCCCCceeeeeeCCCcccccccchhhhhhHHHHHHHHHhcCCCCCCEEEEccccCCCCCCc
Q 025662 88 QWALGIDPDLSGA-LAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPYPQDGK 166 (249)
Q Consensus 88 m~ILGIDPGl~Ga-~avL~~~g~g~~~~v~D~pti~v~~g~~~R~r~d~~~L~~lL~~~~~p~p~~a~IE~v~~~p~qgv 166 (249)
..|||||+|..-. +|+-+..+. ......+++.. ....+.+.|.++++++ .++.++|=-...| +|.
T Consensus 3 ~~iLglD~G~kriGvAvsd~~~~----~A~pl~ti~~~-----~~~~~~~~l~~li~e~---~v~~iVvGlP~~m--dGt 68 (138)
T 1nu0_A 3 GTLMAFDFGTKSIGVAVGQRITG----TARPLPAIKAQ-----DGTPDWNIIERLLKEW---QPDEIIVGLPLNM--DGT 68 (138)
T ss_dssp CEEEEEECCSSEEEEEEEETTTT----EEEEEEEEEEE-----TTEECHHHHHHHHHHH---CCSEEEEEEEECT--TSC
T ss_pred CeEEEEEeCCCEEEEEEEcCCCC----EEeeEEEEEcC-----CcchHHHHHHHHHHHc---CCCEEEEecccCC--CcC
Confidence 4699999999988 999887653 22233444321 1245688999999999 7888887654422 332
Q ss_pred cceeechhhhHHHHHHHHHcCCceeEeC
Q 025662 167 QGWWSGGFGYGLWIGILVASGFSVVPIP 194 (249)
Q Consensus 167 qSaf~~G~a~Gv~~gvLaa~gIPV~eVt 194 (249)
.+- ..-..+-....+-...++||+.+.
T Consensus 69 ~~~-~~~~~~~f~~~L~~~~~lpV~~~D 95 (138)
T 1nu0_A 69 EQP-LTARARKFANRIHGRFGVEVKLHD 95 (138)
T ss_dssp BCH-HHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred cCH-HHHHHHHHHHHHHHHhCCCEEEEc
Confidence 220 011112222222334589998863
No 8
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=92.34 E-value=0.23 Score=53.06 Aligned_cols=83 Identities=6% Similarity=0.045 Sum_probs=49.8
Q ss_pred HHhhhcccccccCCCCCCCcccccccCCC-CceEEEEcCCCC-----ce-EEEEecCCCCceeeeeeCCCcc-cccccch
Q 025662 58 AQMKQNWLDSLTFPPLHVHDLTANQTNAD-SQWALGIDPDLS-----GA-LAVLKSDHNGCSAEVFDTPHLP-VLVGKRV 129 (249)
Q Consensus 58 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~m~ILGIDPGl~-----Ga-~avL~~~g~g~~~~v~D~pti~-v~~g~~~ 129 (249)
....+|..+-|.-+|-.-+ .. .+ ...|+|||||.+ |+ +|+|+..|. ++|+.+|. ...+...
T Consensus 491 ~~f~~nL~~lL~~aP~~p~-~~-----lg~~~~VlaldpG~r~~g~~g~k~a~vD~~G~-----vl~~~~i~~~~~~~~~ 559 (1219)
T 3psi_A 491 KTVRHKFMTKLDQAPFIPN-VR-----DPKIPKILSLTCGQGRFGADAIIAVYVNRKGD-----FIRDYKIVDNPFDKTN 559 (1219)
T ss_dssp HHHHHHHHHHHCBCCCCSS-SS-----SCCCCCEEEEECTTCCTTTTCEEEEEECTTSC-----EEEEEEECSCTTCSSC
T ss_pred HHHHHHHHHHHhCCCCCCC-cc-----cCCCCeEEEecCCCCCCCCCceEEEEECCCCC-----EEEEEEEcCCCCChhh
Confidence 4556666555555542111 11 23 447999999986 77 889988874 33444331 1111112
Q ss_pred hhhhhHHHHHHHHHhcCCCCCCEEEE
Q 025662 130 RKRLDAKSMIMLLRSLDAPIGTTAYV 155 (249)
Q Consensus 130 R~r~d~~~L~~lL~~~~~p~p~~a~I 155 (249)
| ....+.|..+|.+| .|++++|
T Consensus 560 ~-~~a~~~l~~li~~~---~~~vIaI 581 (1219)
T 3psi_A 560 P-EKFEDTLDNIIQSC---QPNAIGI 581 (1219)
T ss_dssp S-HHHHHHHHHHHHHH---CCSEEEE
T ss_pred H-HHHHHHHHHHHHHc---CCcEEEE
Confidence 2 22347899999999 8999987
No 9
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=92.30 E-value=0.24 Score=52.05 Aligned_cols=83 Identities=6% Similarity=0.045 Sum_probs=49.4
Q ss_pred HHhhhcccccccCCCCCCCcccccccCCC-CceEEEEcCCCC-----ce-EEEEecCCCCceeeeeeCCCcc-cccccch
Q 025662 58 AQMKQNWLDSLTFPPLHVHDLTANQTNAD-SQWALGIDPDLS-----GA-LAVLKSDHNGCSAEVFDTPHLP-VLVGKRV 129 (249)
Q Consensus 58 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~m~ILGIDPGl~-----Ga-~avL~~~g~g~~~~v~D~pti~-v~~g~~~ 129 (249)
....+|..+-|.-+|-.-+ .. .+ ...|+|||||.+ |+ +|+|+..|. ++|+.++. ...+...
T Consensus 494 ~~f~~nL~~lL~~aP~~p~-~~-----~g~~~~VlaldpG~~~~~~~g~k~a~vd~~G~-----~l~~~~i~~~~~~~~~ 562 (1030)
T 3psf_A 494 KTVRHKFMTKLDQAPFIPN-VR-----DPKIPKILSLTCGQGRFGADAIIAVYVNRKGD-----FIRDYKIVDNPFDKTN 562 (1030)
T ss_dssp HHHHHHHHHHHCCCCCCSC-TT-----SCCCCCEEEEECTTCCTTTSCEEEEEECTTSC-----EEEEEEECSCTTCSSC
T ss_pred HHHHHHHHHHHhCCCCCCC-cc-----cCCCCeEEEecCCCCCCCCCCeEEEEECCCCC-----EEEEEEEcCCCCChhh
Confidence 4556666655555552111 11 23 346999999985 77 889988874 33333331 1111112
Q ss_pred hhhhhHHHHHHHHHhcCCCCCCEEEE
Q 025662 130 RKRLDAKSMIMLLRSLDAPIGTTAYV 155 (249)
Q Consensus 130 R~r~d~~~L~~lL~~~~~p~p~~a~I 155 (249)
| .-..+.|..+|.+| .|++++|
T Consensus 563 ~-~~~~~~l~~li~~~---~~~~IaI 584 (1030)
T 3psf_A 563 P-EKFEDTLDNIIQSC---QPNAIGI 584 (1030)
T ss_dssp C-HHHHHHHHHHHHHH---CCSEEEE
T ss_pred H-HHHHHHHHHHHHHc---CCcEEEE
Confidence 2 22237899999999 8999987
No 10
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}
Probab=86.85 E-value=0.67 Score=40.03 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=52.5
Q ss_pred CceEEEEcCCCCce-EEEEecCCCCceeeeeeCCCcccccccchhhhhhHHHHHHHHHhcCC--CCCCEEEEccccCCCC
Q 025662 87 SQWALGIDPDLSGA-LAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDA--PIGTTAYVEQSIPYPQ 163 (249)
Q Consensus 87 ~m~ILGIDPGl~Ga-~avL~~~g~g~~~~v~D~pti~v~~g~~~R~r~d~~~L~~lL~~~~~--p~p~~a~IE~v~~~p~ 163 (249)
+|.|||||-...-+ +|+++.+. .+.-+ ... .+.-.+.+...+.++|++... ...+.+++=.- ||
T Consensus 1 ~M~iLaIdTS~~~~svAl~~~~~---~~~~~-----~~~--~~~Hs~~L~p~i~~~L~~a~~~~~dld~Iav~~G---PG 67 (213)
T 3r6m_A 1 SAKILAIDTATENCSVALLVNDQ---VISRS-----EVA--PRDHTKKVLPMVDEVLKEAGLTLQDLDALAFGRG---PG 67 (213)
T ss_dssp -CCEEEEECSSSEEEEEEESSSC---EEEEE-----EEC--CSCCHHHHHHHHHHHHHTTTCCTTTCSEEEEEEE---SS
T ss_pred CCEEEEEEccCcceEEEEEECCE---EEEEE-----Eec--hHHHHHHHHHHHHHHHHHcCCCHHHccEEEEecC---CC
Confidence 58999999988777 99997532 22211 111 111123445567777776532 23344443322 32
Q ss_pred CCccceeechhhhHHHHHHHHHcCCceeEeCchh
Q 025662 164 DGKQGWWSGGFGYGLWIGILVASGFSVVPIPSLT 197 (249)
Q Consensus 164 qgvqSaf~~G~a~Gv~~gvLaa~gIPV~eVtP~~ 197 (249)
--+.+. =+.+...+++.+.++|++.|+-.+
T Consensus 68 --sfTglR--ig~~~AkgLa~~~~iPl~gVstL~ 97 (213)
T 3r6m_A 68 --SFTGVR--IGIGIAQGLAFGAELPMIGVSTLA 97 (213)
T ss_dssp --CHHHHH--HHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred --chhhHH--HHHHHHHHHHHHhCCCEEEEcCHH
Confidence 112222 233455677888999999998764
No 11
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=86.05 E-value=1.8 Score=41.71 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=36.0
Q ss_pred CCceEEEEcC--CCCc---eEEEEecCCCCceeeeeeCCCcccccccchhhhhhHHHHHHHHHhcCCCCCCEEEEccc
Q 025662 86 DSQWALGIDP--DLSG---ALAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQS 158 (249)
Q Consensus 86 ~~m~ILGIDP--Gl~G---a~avL~~~g~g~~~~v~D~pti~v~~g~~~R~r~d~~~L~~lL~~~~~p~p~~a~IE~v 158 (249)
+..+++|+|| |.++ +++++..++. ...+++ .. .+.........+.+.++.+.| .+..+++|.-
T Consensus 418 ~~~~~~GvD~S~G~~~D~tai~v~~~~g~--~~~~v~--~~---~~~~~~~~~~~~~I~~l~~~y---~~~~I~iD~~ 485 (592)
T 3cpe_A 418 DRKYIATLDCSEGRGQDYHALHIIDVTDD--VWEQVG--VL---HSNTISHLILPDIVMRYLVEY---NECPVYIELN 485 (592)
T ss_dssp TCCEEEEEECCSSBTTBCEEEEEEECSSS--SEEEEE--EE---EESSSCTTTHHHHHHHHHHHT---TSCCEEEEES
T ss_pred CceEEEEEecCCCCCCCceEEEEEEcCCC--ceEEEE--EE---ecCCCCHHHHHHHHHHHHHHc---CCcEEEEecC
Confidence 4567999999 4444 2556643432 223322 11 111112344567788888888 6778888874
No 12
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=80.19 E-value=3 Score=39.23 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=22.2
Q ss_pred cCCCCceEEEEcCCCCce-EEEEecCCC
Q 025662 83 TNADSQWALGIDPDLSGA-LAVLKSDHN 109 (249)
Q Consensus 83 ~~~~~m~ILGIDPGl~Ga-~avL~~~g~ 109 (249)
+|++.+.+||||=|+++. .++++.++.
T Consensus 1 ~~aM~~~~lgIDiGtts~k~~l~d~~G~ 28 (501)
T 3g25_A 1 SNAMEKYILSIDQGTTSSRAILFNQKGE 28 (501)
T ss_dssp --CCCCEEEEEEECSSEEEEEEECTTSC
T ss_pred CcccccEEEEEEeCccceEEEEEcCCCC
Confidence 478888999999999999 888887764
No 13
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=73.05 E-value=2.1 Score=36.44 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=19.3
Q ss_pred ceEEEEcCCCCce-EEEEecCCC
Q 025662 88 QWALGIDPDLSGA-LAVLKSDHN 109 (249)
Q Consensus 88 m~ILGIDPGl~Ga-~avL~~~g~ 109 (249)
|.+||||-|++-+ .+|++.++.
T Consensus 1 M~~lGID~GsT~tk~av~d~~~~ 23 (276)
T 4ehu_A 1 MYTMGLDIGSTASKGVILKNGED 23 (276)
T ss_dssp CEEEEEEECSSCEEEEEEETTTE
T ss_pred CeEEEEEcCccEEEEEEEECCCe
Confidence 7899999999999 999987763
No 14
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=72.47 E-value=35 Score=28.39 Aligned_cols=101 Identities=10% Similarity=-0.043 Sum_probs=49.2
Q ss_pred CCceEEEEcCCCCce-EEEEecCCCCceeeeeeCCCcccccccc---hhhhhhHHHHHHHHHhcCCCCCCEEEEccccCC
Q 025662 86 DSQWALGIDPDLSGA-LAVLKSDHNGCSAEVFDTPHLPVLVGKR---VRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPY 161 (249)
Q Consensus 86 ~~m~ILGIDPGl~Ga-~avL~~~g~g~~~~v~D~pti~v~~g~~---~R~r~d~~~L~~lL~~~~~p~p~~a~IE~v~~~ 161 (249)
.+..++|||=|++.. +.+++.++. .+.....++.++..|.- .+.....+.+.+....+.......+++.-.. .
T Consensus 26 ~~~~~~gIDiGS~s~k~vi~~~~~~--~l~~~~~~~~~l~~g~i~d~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~-~ 102 (272)
T 3h1q_A 26 PPPYKVGVDLGTADIVLVVTDQEGI--PVAGALKWASVVKDGLVVDYIGAIQIVRELKAKVERLLGSELFQAATAIPP-G 102 (272)
T ss_dssp CSCCEEEEECCSSEEEEEEECTTCC--EEEEEEEECCCCBTTBCTTHHHHHHHHHHHHHHHHHHSSSCCCEEEEECCS-C
T ss_pred CCCEEEEEEcccceEEEEEECCCCc--EEEEEeecccccCCCEEEcHHHHHHHHHHHHHHHHHhcCCccCeEEEEcCC-C
Confidence 345799999999999 777654443 44444444444444432 2232333333333333311122333333221 1
Q ss_pred CCCCccceeechhhhHHHHHHHHHcCCceeEeCchhh
Q 025662 162 PQDGKQGWWSGGFGYGLWIGILVASGFSVVPIPSLTW 198 (249)
Q Consensus 162 p~qgvqSaf~~G~a~Gv~~gvLaa~gIPV~eVtP~~W 198 (249)
+.+ ..+-.+.-++...|+++..+.+..-
T Consensus 103 ~~~---------~~~~~~~~~~~~~g~~~~~i~~e~~ 130 (272)
T 3h1q_A 103 TVG---------RNAEACGHVVAGAGLELVTLVDEPV 130 (272)
T ss_dssp C------------CTTHHHHHHHHTTCEEEEEECHHH
T ss_pred CCH---------HHHHHHHHHHHHcCCeeeecccHHH
Confidence 111 2233455677778888777665443
No 15
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=68.72 E-value=12 Score=32.13 Aligned_cols=60 Identities=17% Similarity=0.081 Sum_probs=35.8
Q ss_pred cCCCCceEEEEcCCCCce-EEEEecCCCCceeeeeeCCCcccccccchhhhhhHHHHHHHHHhc
Q 025662 83 TNADSQWALGIDPDLSGA-LAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSL 145 (249)
Q Consensus 83 ~~~~~m~ILGIDPGl~Ga-~avL~~~g~g~~~~v~D~pti~v~~g~~~R~r~d~~~L~~lL~~~ 145 (249)
+|.+...+||||-|.+.. +++++.++. .+.....|+-. ..+...-...+.+.+.+++.+.
T Consensus 1 ~~~m~~~~lgiDiggt~~~~~l~d~~g~--il~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~~ 61 (326)
T 2qm1_A 1 SNAMDKKIIGIDLGGTTIKFAILTTDGV--VQQKWSIETNI-LEDGKHIVPSIIESIRHRIDLY 61 (326)
T ss_dssp CCGGGCEEEEEEECSSEEEEEEEETTCC--EEEEEEEECCC-TTTTTTHHHHHHHHHHHHHHHT
T ss_pred CCCcccEEEEEEECCCEEEEEEECCCCC--EEEEEEEcCCC-CCCHHHHHHHHHHHHHHHHHHc
Confidence 356667899999999999 888887764 33322233211 0111133445556666666665
No 16
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=67.76 E-value=9.7 Score=34.37 Aligned_cols=101 Identities=10% Similarity=-0.056 Sum_probs=50.5
Q ss_pred CCceEEEEcCCCCce-EEEEecCCCCceeeeeeCCCcccccccc-----hh--hhhhHHHHHHHHHhcCC--CCCCEEEE
Q 025662 86 DSQWALGIDPDLSGA-LAVLKSDHNGCSAEVFDTPHLPVLVGKR-----VR--KRLDAKSMIMLLRSLDA--PIGTTAYV 155 (249)
Q Consensus 86 ~~m~ILGIDPGl~Ga-~avL~~~g~g~~~~v~D~pti~v~~g~~-----~R--~r~d~~~L~~lL~~~~~--p~p~~a~I 155 (249)
++|.|||||-...-+ .||++.+.- ....... .....|+- .| .+.....+.+.|++... ...+.+++
T Consensus 4 ~~M~iLgIdts~~~~svAl~~~~~i--~~~~~~~--~~~~~gGv~p~~a~~~H~~~l~~~i~~~L~~ag~~~~did~Iav 79 (334)
T 3eno_A 4 DPMIVLGLEGTAHTISCGIIDESRI--LAMESSM--YRPKTGGIRPLDAAVHHSEVIDTVISRALEKAKISIHDIDLIGF 79 (334)
T ss_dssp CCCEEEEEECSSSEEEEEEEESSCC--CEEEEEE--CCCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCEEEE
T ss_pred cCceEEEEECCCcCeEEEEEECCEE--EEEEEEe--eccccCCcCcchHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 359999999877766 999985431 1111110 00011111 01 12344556666766432 23344443
Q ss_pred ccccCCCCCCccceeechhhhHHHHHHHHHcCCceeEeCchh
Q 025662 156 EQSIPYPQDGKQGWWSGGFGYGLWIGILVASGFSVVPIPSLT 197 (249)
Q Consensus 156 E~v~~~p~qgvqSaf~~G~a~Gv~~gvLaa~gIPV~eVtP~~ 197 (249)
=. |.|--+.+..|. ....+...+.++|++.|.-..
T Consensus 80 ~~-----gPG~~t~lrvg~--~~ak~La~~~~~Pl~~v~hl~ 114 (334)
T 3eno_A 80 SM-----GPGLAPSLRVTA--TAARTISVLTGKPIIGVNHPL 114 (334)
T ss_dssp EC-----SSSCHHHHHHHH--HHHHHHHHHHTCCCEEECHHH
T ss_pred Ec-----CCCCcchHHHHH--HHHHHHhhccCCCeEEeccHH
Confidence 21 222223333332 233456667899999987554
No 17
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A
Probab=61.02 E-value=17 Score=31.08 Aligned_cols=92 Identities=14% Similarity=0.138 Sum_probs=49.1
Q ss_pred eEEEEcCCCCce-EEEEecCCCCceeeeeeCCCcccccccchhhhhhHHHHHHHHHhcCC--CCCCEEEEccccCCCCCC
Q 025662 89 WALGIDPDLSGA-LAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDA--PIGTTAYVEQSIPYPQDG 165 (249)
Q Consensus 89 ~ILGIDPGl~Ga-~avL~~~g~g~~~~v~D~pti~v~~g~~~R~r~d~~~L~~lL~~~~~--p~p~~a~IE~v~~~p~qg 165 (249)
.|||||--..-+ .|+++.+ . ++.... ..+ +.-.+.....+.++|.+... ..-+.+++=.- ||
T Consensus 2 ~iL~idTs~~~~sval~~~~----~--~~~~~~---~~~-~~h~~~l~~~i~~~L~~a~~~~~did~Iav~~G---PG-- 66 (231)
T 2gel_A 2 RILAIDTATEACSVALWNNG----T--INAHFE---LCP-REHTQRILPMVQEILAASGASLNEIDALAFGRG---PG-- 66 (231)
T ss_dssp EEEEEECSSSEEEEEEEETT----E--EEEEEE---ECC-SCCHHHHHHHHHHHHHHTTCCGGGCSEEEEECC---SS--
T ss_pred eEEEEECCCcCeEEEEEECC----E--EEEEEh---hhh-HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcC---CC--
Confidence 699999988877 9999743 1 222111 111 11123355666777776532 22233333221 21
Q ss_pred ccceeechhhhHHHHHHHHHcCCceeEeCchh
Q 025662 166 KQGWWSGGFGYGLWIGILVASGFSVVPIPSLT 197 (249)
Q Consensus 166 vqSaf~~G~a~Gv~~gvLaa~gIPV~eVtP~~ 197 (249)
--+.+..| .....+.+.+.++|++-|+-..
T Consensus 67 sftglRig--~~~ak~la~~~~~Pl~~V~~l~ 96 (231)
T 2gel_A 67 SFTGVRIG--IGIAQGLALGANLPMIGVSTLA 96 (231)
T ss_dssp CHHHHHHH--HHHHHHHHHTTTCCEEEECHHH
T ss_pred hhHhHHHH--HHHHHHHHHHcCCCEEEeccHH
Confidence 11222222 3455577788999999998543
No 18
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=58.70 E-value=27 Score=31.07 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=16.9
Q ss_pred ceEEEEcCCCCce-EEEEecC
Q 025662 88 QWALGIDPDLSGA-LAVLKSD 107 (249)
Q Consensus 88 m~ILGIDPGl~Ga-~avL~~~ 107 (249)
|.|||||-+..-+ .||++.+
T Consensus 1 M~iLgIdts~~~~~val~~~g 21 (330)
T 2ivn_A 1 MLALGIEGTAHTLGIGIVSED 21 (330)
T ss_dssp CCEEEEECSSSEEEEEEECSS
T ss_pred CEEEEEEccCCCeEEEEEECC
Confidence 6899999998877 9999754
No 19
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=58.03 E-value=31 Score=32.67 Aligned_cols=99 Identities=8% Similarity=-0.083 Sum_probs=50.1
Q ss_pred CceEEEEcCCCCce-EEEEecCCCCceeee-eeCCCcccccccc-----hh--hhhhHHHHHHHHHhcCCCCCCEEEEcc
Q 025662 87 SQWALGIDPDLSGA-LAVLKSDHNGCSAEV-FDTPHLPVLVGKR-----VR--KRLDAKSMIMLLRSLDAPIGTTAYVEQ 157 (249)
Q Consensus 87 ~m~ILGIDPGl~Ga-~avL~~~g~g~~~~v-~D~pti~v~~g~~-----~R--~r~d~~~L~~lL~~~~~p~p~~a~IE~ 157 (249)
.|.|||||-...-+ .||++.++.- ..++ .+. ....|+- .| .+.+...+.++|++......+.+++=.
T Consensus 5 ~m~iL~i~ts~~~~~~al~~~~~~~-~~~~~~~~---~~~~gg~~p~~a~~~h~~~l~~~i~~~l~~~~~~~id~ia~~~ 80 (540)
T 3en9_A 5 PMICLGLEGTAEKTGVGIVTSDGEV-LFNKTIMY---KPPKQGINPREAADHHAETFPKLIKEAFEVVDKNEIDLIAFSQ 80 (540)
T ss_dssp SCEEEEEECSSSEEEEEEEETTSCE-EEEEEEEC---CCCCSSSSCCCHHHHHHHHHHHHHHHHHHHSCGGGCCEEEEEE
T ss_pred cceEEEEEcCccceEEEEEECCCeE-EEEEEEee---cCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCHhHCcEEEEec
Confidence 48999999888777 9999976421 1111 111 1111111 11 223334455555553223556665522
Q ss_pred ccCCCCCCccceeechhhhHHHHHHHHHcCCceeEeCch
Q 025662 158 SIPYPQDGKQGWWSGGFGYGLWIGILVASGFSVVPIPSL 196 (249)
Q Consensus 158 v~~~p~qgvqSaf~~G~a~Gv~~gvLaa~gIPV~eVtP~ 196 (249)
. || --+.+-.|. ....+...+.++|++.|.-.
T Consensus 81 -g--PG--~~~~l~vg~--~~ak~la~~~~~p~~~v~h~ 112 (540)
T 3en9_A 81 -G--PG--LGPSLRVTA--TVARTLSLTLKKPIIGVNHC 112 (540)
T ss_dssp -E--SS--CHHHHHHHH--HHHHHHHHHHTCCEEEEEHH
T ss_pred -C--CC--chhhHHHHH--HHHHHHHHHhCCCeeEeccH
Confidence 2 33 222222222 22334566779999988644
No 20
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=54.79 E-value=18 Score=30.89 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=50.7
Q ss_pred ceEEEEcCCCCce-EEEEecCCCCceeeeeeCCCcccccccchhhhhhHHHHHHHHHhcCC--CCCCEEEEccccCCCCC
Q 025662 88 QWALGIDPDLSGA-LAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDA--PIGTTAYVEQSIPYPQD 164 (249)
Q Consensus 88 m~ILGIDPGl~Ga-~avL~~~g~g~~~~v~D~pti~v~~g~~~R~r~d~~~L~~lL~~~~~--p~p~~a~IE~v~~~p~q 164 (249)
+.||+||-.+.-+ +||++.+. .++.. ....+.-.+.+...+.++|.+... ..-+.+++ +.
T Consensus 12 ~~iLaidTS~~~~sval~~~~~---~l~~~-------~~~~r~Hse~L~p~i~~~L~~a~~~~~dld~Iav-------~~ 74 (218)
T 2a6a_A 12 HMNVLALDTSQRIRIGLRKGED---LFEIS-------YTGEKKHAEILPVVVKKLLDELDLKVKDLDVVGV-------GI 74 (218)
T ss_dssp -CEEEEEECSSSEEEEEEETTE---EEEEE-------EESCGGGGGHHHHHHHHHHHHHTCCGGGCSEEEE-------EC
T ss_pred ceEEEEEcCCcCeEEEEEECCE---EEEEE-------ecchHHHHHHHHHHHHHHHHHcCCCHHHCCEEEE-------Ec
Confidence 4599999999999 99997431 22111 111112234445556666665422 12233333 22
Q ss_pred CccceeechhhhHHHHHHHHHcCCceeEeCchhh
Q 025662 165 GKQGWWSGGFGYGLWIGILVASGFSVVPIPSLTW 198 (249)
Q Consensus 165 gvqSaf~~G~a~Gv~~gvLaa~gIPV~eVtP~~W 198 (249)
|+.|--.+==+.+...+++.+.++|++-|+-.+.
T Consensus 75 GPGsfTGlRiG~~~Ak~La~~~~iPl~gVs~l~a 108 (218)
T 2a6a_A 75 GPGGLTGLRVGIATVVGLVSPYDIPVAPLNSFEM 108 (218)
T ss_dssp CSSCHHHHHHHHHHHHHHHGGGTCCEEEECHHHH
T ss_pred CCCchHhHHHHHHHHHHHHHHcCCCEEEeCcHHH
Confidence 3322222223344556778889999999996543
No 21
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=53.09 E-value=24 Score=33.02 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=18.5
Q ss_pred eEEEEcCCCCce-EEEEecCCC
Q 025662 89 WALGIDPDLSGA-LAVLKSDHN 109 (249)
Q Consensus 89 ~ILGIDPGl~Ga-~avL~~~g~ 109 (249)
.+||||=|+++. .++++.++.
T Consensus 5 ~~lgIDiGtT~~k~~l~d~~g~ 26 (503)
T 2w40_A 5 VILSIDQSTQSTKVFFYDEELN 26 (503)
T ss_dssp EEEEEEECSSEEEEEEEETTCC
T ss_pred EEEEEEeCCcceEEEEECCCCC
Confidence 589999999999 999987764
No 22
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=52.13 E-value=27 Score=33.01 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=22.9
Q ss_pred eEEEEcCCCCce-EEEEecCCCCceeee--eeCCCc
Q 025662 89 WALGIDPDLSGA-LAVLKSDHNGCSAEV--FDTPHL 121 (249)
Q Consensus 89 ~ILGIDPGl~Ga-~avL~~~g~g~~~~v--~D~pti 121 (249)
.+||||=|+++. .++++.++. .+.. ..++..
T Consensus 27 ~~lgIDiGtts~k~~l~d~~G~--il~~~~~~~~~~ 60 (520)
T 4e1j_A 27 YILAIDQGTTSTRAIVFDGNQK--IAGVGQKEFKQH 60 (520)
T ss_dssp EEEEEEECSSEEEEEEECTTSC--EEEEEEEECCCB
T ss_pred eEEEEEeCCcceEEEEECCCCC--EEEEEEEecccc
Confidence 699999999999 888887764 4433 445543
No 23
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=49.72 E-value=30 Score=32.55 Aligned_cols=54 Identities=11% Similarity=0.184 Sum_probs=31.1
Q ss_pred eEEEEcCCCCce-EEEEecCCCCceee--eeeCCCcccccccc-hhhhhhHHHHHHHHHh
Q 025662 89 WALGIDPDLSGA-LAVLKSDHNGCSAE--VFDTPHLPVLVGKR-VRKRLDAKSMIMLLRS 144 (249)
Q Consensus 89 ~ILGIDPGl~Ga-~avL~~~g~g~~~~--v~D~pti~v~~g~~-~R~r~d~~~L~~lL~~ 144 (249)
.+||||=|+++. .++++.++. .+. -+.++......|.. .-.....+.+.+.|++
T Consensus 5 ~~lgIDiGtts~K~~l~d~~G~--il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~ 62 (504)
T 3ll3_A 5 YIIGMDVGTTATKGVLYDINGK--AVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFD 62 (504)
T ss_dssp EEEEEEECSSEEEEEEEETTSC--EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCceEEEEEcCCCC--EEEEEEeecceecCCCCcEEECHHHHHHHHHHHHHH
Confidence 599999999999 888887764 433 23455443222322 2223334444444444
No 24
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=47.95 E-value=42 Score=30.11 Aligned_cols=59 Identities=7% Similarity=-0.120 Sum_probs=36.0
Q ss_pred cCCCCceEEEEcCCCCce-EEEEecCCCCceeeeeeCCCcccccccchhhhhhHHHHHHHHHhc
Q 025662 83 TNADSQWALGIDPDLSGA-LAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSL 145 (249)
Q Consensus 83 ~~~~~m~ILGIDPGl~Ga-~avL~~~g~g~~~~v~D~pti~v~~g~~~R~r~d~~~L~~lL~~~ 145 (249)
-|.....+||||-|.+.. +++++.++. .+.-...|+. ..+...-...+.+.+.+++.++
T Consensus 80 ~~~~~~~~lgiDiG~t~i~~~l~d~~G~--il~~~~~~~~--~~~~~~~~~~l~~~i~~~~~~~ 139 (406)
T 1z6r_A 80 VETEAWHYLSLRISRGEIFLALRDLSSK--LVVEESQELA--LKDDLPLLDRIISHIDQFFIRH 139 (406)
T ss_dssp ECCTTCEEEEEEEETTEEEEEEEETTCC--EEEEEEEECC--SSCSSCHHHHHHHHHHHHHHHT
T ss_pred EcCCccEEEEEEEcCCEEEEEEEcCCCC--EEEEEEecCC--CCCHHHHHHHHHHHHHHHHHhc
Confidence 355667899999999999 899888764 4333333331 1111233445555666666655
No 25
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=47.31 E-value=75 Score=28.68 Aligned_cols=19 Identities=21% Similarity=0.517 Sum_probs=16.5
Q ss_pred eEEEEcCCCCce-EEEEecC
Q 025662 89 WALGIDPDLSGA-LAVLKSD 107 (249)
Q Consensus 89 ~ILGIDPGl~Ga-~avL~~~ 107 (249)
.+||||.|.+.. +++++.+
T Consensus 3 ~vlgidiGgt~ik~al~d~~ 22 (381)
T 1saz_A 3 RILTINPGSTSTKLSIFEDE 22 (381)
T ss_dssp EEEEEEECSSEEEEEEEETT
T ss_pred eEEEEECCccceeEEEEecc
Confidence 589999999999 9999843
No 26
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=46.23 E-value=14 Score=32.03 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.0
Q ss_pred CceEEEEcCCCCce-EEEEecCC
Q 025662 87 SQWALGIDPDLSGA-LAVLKSDH 108 (249)
Q Consensus 87 ~m~ILGIDPGl~Ga-~avL~~~g 108 (249)
+|.+||||-|.+.. +++++.++
T Consensus 2 ~~~~lGiD~Gst~~k~~l~d~~g 24 (270)
T 1hux_A 2 SIYTLGIDVGSTASKCIILKDGK 24 (270)
T ss_dssp CCEEEEEEECSSEEEEEEEETTT
T ss_pred CcEEEEEEeccceEEEEEEeCCC
Confidence 36799999999999 88888765
No 27
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=46.19 E-value=56 Score=30.80 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=25.3
Q ss_pred ceEEEEcCCCCce-EEEEecCCCCceee--eeeCCCcccccc
Q 025662 88 QWALGIDPDLSGA-LAVLKSDHNGCSAE--VFDTPHLPVLVG 126 (249)
Q Consensus 88 m~ILGIDPGl~Ga-~avL~~~g~g~~~~--v~D~pti~v~~g 126 (249)
+-|||||=|+++. ..|++.+|. .+. -..++.+....|
T Consensus 4 kYvlgID~GTss~Ka~l~d~~G~--~va~~~~~~~~~~p~~G 43 (526)
T 3ezw_A 4 KYIVALDQGTTSSRAVVMDHDAN--IISVSQREFEQIYPKPG 43 (526)
T ss_dssp CEEEEEEECSSEEEEEEECTTCC--EEEEEEEECCCBCSSTT
T ss_pred eEEEEEEccccceeeeEEcCCCC--EEEEEEEecCcccCCCC
Confidence 4699999999999 888887764 332 345665543333
No 28
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=44.73 E-value=40 Score=31.47 Aligned_cols=22 Identities=18% Similarity=0.447 Sum_probs=18.7
Q ss_pred ceEEEEcCCCCce-EEEEecCCC
Q 025662 88 QWALGIDPDLSGA-LAVLKSDHN 109 (249)
Q Consensus 88 m~ILGIDPGl~Ga-~avL~~~g~ 109 (249)
+.+||||=|+++. .++++.++.
T Consensus 3 ~~~lgiDiGtt~~k~~l~d~~g~ 25 (497)
T 2zf5_O 3 KFVLSLDEGTTSARAIIFDRESN 25 (497)
T ss_dssp CEEEEEEECSSEEEEEEECTTCC
T ss_pred cEEEEEecCCchhEEEEECCCCC
Confidence 3689999999999 888887664
No 29
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=44.54 E-value=44 Score=28.90 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=20.4
Q ss_pred CCceEEEEcCCCCce-EEEEecCCC
Q 025662 86 DSQWALGIDPDLSGA-LAVLKSDHN 109 (249)
Q Consensus 86 ~~m~ILGIDPGl~Ga-~avL~~~g~ 109 (249)
++|.+||||=|.+.. +++++.++.
T Consensus 4 M~~~~lgiDiGgt~~~~~l~d~~g~ 28 (347)
T 2ch5_A 4 MAAIYGGVEGGGTRSEVLLVSEDGK 28 (347)
T ss_dssp SSCEEEEEEECTTCEEEEEEETTSC
T ss_pred cceEEEEEEcCccceEEEEEeCCCC
Confidence 556899999999999 888887764
No 30
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=42.72 E-value=41 Score=31.66 Aligned_cols=55 Identities=9% Similarity=-0.112 Sum_probs=31.6
Q ss_pred eEEEEcCCCCce-EEEEecCCCCceee--eeeCCCcccccccc-hhhhhhHHHHHHHHHhc
Q 025662 89 WALGIDPDLSGA-LAVLKSDHNGCSAE--VFDTPHLPVLVGKR-VRKRLDAKSMIMLLRSL 145 (249)
Q Consensus 89 ~ILGIDPGl~Ga-~avL~~~g~g~~~~--v~D~pti~v~~g~~-~R~r~d~~~L~~lL~~~ 145 (249)
.+||||=|+++. .++++.++. .+. .+.++......|.. .-.....+.+.+.|++.
T Consensus 6 ~~lgIDiGtts~k~~l~d~~G~--il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~ 64 (511)
T 3hz6_A 6 YIATFDIGTTEVKAALADRDGG--LHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIASSW 64 (511)
T ss_dssp EEEEEEECSSEEEEEEECTTSC--EEEEEEEECCCBSTTSSCCEECHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCceEEEEECCCCC--EEEEEEeecceecCCCCCEEECHHHHHHHHHHHHHHH
Confidence 699999999999 888887764 433 33455443222322 22233344444455443
No 31
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=42.51 E-value=36 Score=31.99 Aligned_cols=22 Identities=9% Similarity=0.258 Sum_probs=18.6
Q ss_pred ceEEEEcCCCCce-EEEEecCCC
Q 025662 88 QWALGIDPDLSGA-LAVLKSDHN 109 (249)
Q Consensus 88 m~ILGIDPGl~Ga-~avL~~~g~ 109 (249)
..+||||=|+++. .++++.++.
T Consensus 7 ~~~lgIDiGtts~k~~l~d~~G~ 29 (508)
T 3ifr_A 7 RQVIGLDIGTTSTIAILVRLPDT 29 (508)
T ss_dssp CEEEEEEECSSEEEEEEEETTTE
T ss_pred CEEEEEEecCcceEEEEECCCCC
Confidence 4699999999999 888887664
No 32
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=42.44 E-value=48 Score=31.11 Aligned_cols=22 Identities=9% Similarity=0.357 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCce-EEEEecCCC
Q 025662 88 QWALGIDPDLSGA-LAVLKSDHN 109 (249)
Q Consensus 88 m~ILGIDPGl~Ga-~avL~~~g~ 109 (249)
+.+||||=|+++. .++++.++.
T Consensus 5 ~~~lgIDiGtts~k~~l~d~~G~ 27 (506)
T 3h3n_X 5 NYVMAIDQGTTSSRAIIFDRNGK 27 (506)
T ss_dssp CEEEEEEECSSEEEEEEEETTSC
T ss_pred CEEEEEEcCCCceEEEEECCCCC
Confidence 4699999999999 888887765
No 33
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=41.82 E-value=83 Score=26.94 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=18.3
Q ss_pred eEEEEcCCCCce-EEEEecCCC
Q 025662 89 WALGIDPDLSGA-LAVLKSDHN 109 (249)
Q Consensus 89 ~ILGIDPGl~Ga-~avL~~~g~ 109 (249)
.+||||=|.+.. +++++.++.
T Consensus 12 ~~lGiDiGgT~i~~~l~d~~G~ 33 (305)
T 1zc6_A 12 YLIGVDGGGTGTRIRLHASDGT 33 (305)
T ss_dssp EEEEEEECSSCEEEEEEETTCC
T ss_pred EEEEEEcCccceEEEEEcCCCC
Confidence 799999999999 888887764
No 34
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=41.81 E-value=46 Score=31.30 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=18.9
Q ss_pred ceEEEEcCCCCce-EEEEecCCC
Q 025662 88 QWALGIDPDLSGA-LAVLKSDHN 109 (249)
Q Consensus 88 m~ILGIDPGl~Ga-~avL~~~g~ 109 (249)
+.+||||=|+++. .++++.++.
T Consensus 3 ~~~lgIDiGtts~k~~l~d~~G~ 25 (510)
T 2p3r_A 3 KYIVALDQGTTSSRAVVMDHDAN 25 (510)
T ss_dssp CEEEEEEECSSEEEEEEECTTCC
T ss_pred cEEEEEEcCCcceEEEEECCCCC
Confidence 4699999999999 888887764
No 35
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=35.29 E-value=49 Score=30.81 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=18.2
Q ss_pred eEEEEcCCCCce-EEEEecCCC
Q 025662 89 WALGIDPDLSGA-LAVLKSDHN 109 (249)
Q Consensus 89 ~ILGIDPGl~Ga-~avL~~~g~ 109 (249)
.+||||=|+++. .++++.++.
T Consensus 3 ~~lgiDiGtT~~k~~l~d~~g~ 24 (495)
T 2dpn_A 3 FLLALDQGTTSSRAILFTLEGR 24 (495)
T ss_dssp CEEEEEECSSEEEEEEECTTSC
T ss_pred EEEEEeeCCcceEEEEECCCCC
Confidence 489999999999 889987764
No 36
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=35.29 E-value=56 Score=30.25 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=17.5
Q ss_pred EEEEcCCCCce-EEEEecCCC
Q 025662 90 ALGIDPDLSGA-LAVLKSDHN 109 (249)
Q Consensus 90 ILGIDPGl~Ga-~avL~~~g~ 109 (249)
+||||-|+++. .++++.++.
T Consensus 2 ~lgiDiGtt~~k~~l~d~~g~ 22 (484)
T 2itm_A 2 YIGIDLGTSGVKVILLNEQGE 22 (484)
T ss_dssp EEEEEECSSEEEEEEECTTSC
T ss_pred EEEEEecCcccEEEEECCCCC
Confidence 69999999999 889987764
No 37
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=34.97 E-value=57 Score=30.97 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCce-EEEEecCCCCceeee--eeCCCc
Q 025662 88 QWALGIDPDLSGA-LAVLKSDHNGCSAEV--FDTPHL 121 (249)
Q Consensus 88 m~ILGIDPGl~Ga-~avL~~~g~g~~~~v--~D~pti 121 (249)
+.+||||=|+++. .++++.++. .+.. ..++.+
T Consensus 5 ~~~lgIDiGtts~ka~l~d~~G~--il~~~~~~~~~~ 39 (554)
T 3l0q_A 5 SYFIGVDVGTGSARAGVFDLQGR--MVGQASREITMF 39 (554)
T ss_dssp CEEEEEEECSSEEEEEEEETTSC--EEEEEEEECCCE
T ss_pred cEEEEEEECcccEEEEEECCCCC--EEEEEEEecccc
Confidence 3699999999999 888887764 4433 345544
No 38
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=32.71 E-value=38 Score=29.48 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=18.1
Q ss_pred ccCCCCce-EEEEcCCCCce-EEEEecCCC
Q 025662 82 QTNADSQW-ALGIDPDLSGA-LAVLKSDHN 109 (249)
Q Consensus 82 ~~~~~~m~-ILGIDPGl~Ga-~avL~~~g~ 109 (249)
+||..+.. +||||-|.+.. +++++.++.
T Consensus 12 ~~~~~~~~~~lgidiggt~i~~~l~d~~g~ 41 (321)
T 3r8e_A 12 HENLYFQGMILGIDVGGTSVKFGLVTPEGE 41 (321)
T ss_dssp -------CCEEEEECCSSEEEEEEECTTCC
T ss_pred hhhhccCcEEEEEEECCCEEEEEEEcCCCc
Confidence 45555544 89999999999 888887764
No 39
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=32.01 E-value=77 Score=29.60 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=18.3
Q ss_pred eEEEEcCCCCce-EEEEecCCC
Q 025662 89 WALGIDPDLSGA-LAVLKSDHN 109 (249)
Q Consensus 89 ~ILGIDPGl~Ga-~avL~~~g~ 109 (249)
.+||||=|+++. .++++.++.
T Consensus 3 ~~lgiDiGtts~k~~l~d~~G~ 24 (504)
T 2d4w_A 3 YVLAIDQGTTSSRAIVFDHSGE 24 (504)
T ss_dssp EEEEEEECSSEEEEEEECTTSC
T ss_pred EEEEEecCCcceEEEEECCCCC
Confidence 589999999999 888887764
No 40
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=30.92 E-value=99 Score=26.77 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=18.3
Q ss_pred eEEEEcCCCCce-EEEEecCCC
Q 025662 89 WALGIDPDLSGA-LAVLKSDHN 109 (249)
Q Consensus 89 ~ILGIDPGl~Ga-~avL~~~g~ 109 (249)
.+||||-|.+.. +++++.++.
T Consensus 3 ~~lgiDiGgt~i~~~l~d~~G~ 24 (321)
T 3vgl_A 3 LTIGVDIGGTKIAAGVVDEEGR 24 (321)
T ss_dssp EEEEEEECSSEEEEEEECTTCC
T ss_pred EEEEEEECCCEEEEEEECCCCC
Confidence 689999999999 889887764
No 41
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=30.46 E-value=92 Score=28.23 Aligned_cols=58 Identities=5% Similarity=-0.174 Sum_probs=33.7
Q ss_pred CCCCceEEEEcCCCCce-EEEEecCCCCceeeeeeCCCcccccccchhhhhhHHHHHHHHHhc
Q 025662 84 NADSQWALGIDPDLSGA-LAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSL 145 (249)
Q Consensus 84 ~~~~m~ILGIDPGl~Ga-~avL~~~g~g~~~~v~D~pti~v~~g~~~R~r~d~~~L~~lL~~~ 145 (249)
|.....+||||-|.+.. +++++.++. .+.-...|+-. .+...-...+.+.+.+++.+.
T Consensus 104 ~~~~~~~lGIDiGgt~i~~~l~d~~G~--il~~~~~~~~~--~~~~~~~~~l~~~i~~~~~~~ 162 (429)
T 1z05_A 104 NNLGWQFLSMRLGRGYLTIALHELGGE--VLIDTKIDIHE--IDQDDVLARLLFEIEEFFQTY 162 (429)
T ss_dssp CCTTEEEEEEEEETTEEEEEEEETTSC--EEEEEEEECCC--CBHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCEEEEEEECCCCC--EEEEEEEcCCC--CCHHHHHHHHHHHHHHHHHhc
Confidence 45567899999999999 889887764 33322223211 111122344455555566554
No 42
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=29.98 E-value=52 Score=31.00 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=31.9
Q ss_pred ceEEEEcCCCCce-EEEEecCCCCceeeee--eCCCcccccccc-hhhhhhHHHHHHHHHhc
Q 025662 88 QWALGIDPDLSGA-LAVLKSDHNGCSAEVF--DTPHLPVLVGKR-VRKRLDAKSMIMLLRSL 145 (249)
Q Consensus 88 m~ILGIDPGl~Ga-~avL~~~g~g~~~~v~--D~pti~v~~g~~-~R~r~d~~~L~~lL~~~ 145 (249)
+.+||||=|+++. .++++.++. .+... .++..+ ..|.. .-.....+.+.+.|++.
T Consensus 6 ~~~lgIDiGTts~Ka~l~d~~G~--i~~~~~~~~~~~~-~~g~~eqdp~~~~~~~~~~i~~~ 64 (482)
T 3h6e_A 6 GATIVIDLGKTLSKVSLWDLDGR--MLDRQVRPSIPLE-IDGIRRLDAPDTGRWLLDVLSRY 64 (482)
T ss_dssp --CEEEEECSSEEEEEEECTTSC--EEEEEEEECCCEE-SSSCEECCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCeEEEEEECCCc--EEEEEEecCCccc-CCCceeECHHHHHHHHHHHHHHH
Confidence 3689999999999 888886654 44433 444332 12211 22344555666666665
No 43
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=25.31 E-value=64 Score=28.81 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=21.5
Q ss_pred CCCCceEEEEcCCCCce-EEEEecCCC
Q 025662 84 NADSQWALGIDPDLSGA-LAVLKSDHN 109 (249)
Q Consensus 84 ~~~~m~ILGIDPGl~Ga-~avL~~~g~ 109 (249)
|.....+||||-|.+.. +++++.++.
T Consensus 83 ~~~~~~~lGIDiGgt~i~~~l~d~~G~ 109 (380)
T 2hoe_A 83 SPNCAYVLGIEVTRDEIAACLIDASMN 109 (380)
T ss_dssp CGGGCEEEEEEECSSEEEEEEEETTCC
T ss_pred ccCCCeEEEEEECCCEEEEEEECCCCC
Confidence 44556899999999999 889888764
No 44
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=24.62 E-value=22 Score=25.04 Aligned_cols=25 Identities=16% Similarity=0.537 Sum_probs=20.4
Q ss_pred hHHHHHHHHHcCC-----ceeEeCchhhhh
Q 025662 176 YGLWIGILVASGF-----SVVPIPSLTWKN 200 (249)
Q Consensus 176 ~Gv~~gvLaa~gI-----PV~eVtP~~WKk 200 (249)
-.+|.-++.+.|| ||--|+|.+|+.
T Consensus 26 ~a~W~y~~TQ~GIeWnlSPVGrVtPkeWr~ 55 (56)
T 1v54_K 26 VAVWVYMATQIGIEWNPSPVGRVTPKEWRE 55 (56)
T ss_dssp HHHHHHHHHHSCCCCCCCCTTTCCCCCCC-
T ss_pred HhhHhhhheeeceeeccCcccccCchhhcc
Confidence 4567788899998 788999999985
No 45
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=24.27 E-value=57 Score=29.05 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=19.8
Q ss_pred CCceEEEEcCCCCce-EEEEecCCCCceeeee
Q 025662 86 DSQWALGIDPDLSGA-LAVLKSDHNGCSAEVF 116 (249)
Q Consensus 86 ~~m~ILGIDPGl~Ga-~avL~~~g~g~~~~v~ 116 (249)
+++.|||||=|++-+ +|+. .++ .++++
T Consensus 11 m~~~vvGIDlGTt~s~va~~-~~g---~~~ii 38 (409)
T 4gni_A 11 GERVVIGITFGNSNSSIAHT-VDD---KAEVI 38 (409)
T ss_dssp --CCEEEEEECSSEEEEEEE-ETT---EEEEE
T ss_pred CCCcEEEEEcCCCeEEEEEE-eCC---ceEEE
Confidence 457899999999999 7777 333 56776
No 46
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=24.20 E-value=1.8e+02 Score=27.44 Aligned_cols=52 Identities=10% Similarity=0.021 Sum_probs=31.4
Q ss_pred ceEEEEcCCCCce-EEEEe-cCCCCceeeeeeCCCcccccccc-hhhhhhHHHHHHHHHhc
Q 025662 88 QWALGIDPDLSGA-LAVLK-SDHNGCSAEVFDTPHLPVLVGKR-VRKRLDAKSMIMLLRSL 145 (249)
Q Consensus 88 m~ILGIDPGl~Ga-~avL~-~~g~g~~~~v~D~pti~v~~g~~-~R~r~d~~~L~~lL~~~ 145 (249)
+.+||||=|+++. .++++ .++. .+.....|+ + +.. .-.....+.+.+.|++.
T Consensus 5 ~~~lgIDiGtts~ka~l~d~~~G~--i~~~~~~~~---~-g~~e~d~~~~~~~i~~~l~~~ 59 (515)
T 3i8b_A 5 TLVAGVDTSTQSCKVRVTDAETGE--LVRFGQAKH---P-NGTSVDPSYWWSAFQEAAEQA 59 (515)
T ss_dssp CEEEEEEECSSEEEEEEEETTTCC--EEEEEEEEC---C-SSSEECTHHHHHHHHHHHHHT
T ss_pred cEEEEEEeccccEEEEEEECCCCe--EEEEEEEeC---C-CCceECHHHHHHHHHHHHHhc
Confidence 4699999999999 88888 5664 333222222 1 111 22344556677777765
No 47
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=23.56 E-value=34 Score=30.56 Aligned_cols=50 Identities=16% Similarity=0.081 Sum_probs=34.3
Q ss_pred ccchhhhhhhhhhhhhccccccccccCcccchhhhhhhhhccchhHHHHHHHhhhcccccccC
Q 025662 8 QPQLQSHCISMNTFVSSKIRTLCTYPFAQHGRTLLVRAAAAGDTTKAAVAAQMKQNWLDSLTF 70 (249)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 70 (249)
||||.++|+.|+- .||=|.+ . ++.|-|.+.+.-..+|-+..++- +++||.
T Consensus 100 r~qLvaLck~m~L------~p~gt~~---~---LR~rLr~rl~~I~~DDr~I~~EG-V~sLs~ 149 (249)
T 3skq_A 100 RPQLAAMSKFMSL------RPFGNDN---M---LRYQIRSKLKDIMNDDKTIDYEG-VESLSQ 149 (249)
T ss_dssp HHHHHHHHHHTTC------CCCSSHH---H---HHHHHHHHHHHHHHHHHHHHHHC-GGGSCH
T ss_pred HHHHHHHHHHhCC------CCCCChH---H---HHHHHHHHHHHHHHhhHHHHHhC-cccCCH
Confidence 7899999999873 2332222 2 45566677777777887777777 888873
No 48
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=23.32 E-value=69 Score=27.87 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=20.1
Q ss_pred CCceEEEEcCCCCce-EEEEecCCC
Q 025662 86 DSQWALGIDPDLSGA-LAVLKSDHN 109 (249)
Q Consensus 86 ~~m~ILGIDPGl~Ga-~avL~~~g~ 109 (249)
+.+.+||||=|.+.. +++++.++.
T Consensus 28 ~~~~~lgiDiGgt~i~~~l~d~~G~ 52 (343)
T 2yhw_A 28 GTLSALAVDLGGTNLRVAIVSMKGE 52 (343)
T ss_dssp CEEEEEEEEECSSEEEEEEEETTSC
T ss_pred CCcEEEEEEECCCEEEEEEECCCCc
Confidence 346799999999999 888887764
No 49
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=22.20 E-value=1.9e+02 Score=21.75 Aligned_cols=60 Identities=7% Similarity=-0.096 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCCCCCEEEEccccCCCCCCccceeechhhhHHHHHHHHHcCCceeEeCchhhhhhhcc
Q 025662 135 AKSMIMLLRSLDAPIGTTAYVEQSIPYPQDGKQGWWSGGFGYGLWIGILVASGFSVVPIPSLTWKNWYGL 204 (249)
Q Consensus 135 ~~~L~~lL~~~~~p~p~~a~IE~v~~~p~qgvqSaf~~G~a~Gv~~gvLaa~gIPV~eVtP~~WKkav~g 204 (249)
.+.|.+..+++ ..+++++=.- +.+.-.-+-+| .+..-++....+||..|++..+...+.+
T Consensus 106 ~~~I~~~a~~~---~~DlIV~G~~----g~~~~~~~~~G---sv~~~vl~~~~~PVlvv~~~~~~~~~~~ 165 (170)
T 2dum_A 106 WDEIVKVAEEE---NVSLIILPSR----GKLSLSHEFLG---STVMRVLRKTKKPVLIIKEVDENELAKT 165 (170)
T ss_dssp HHHHHHHHHHT---TCSEEEEESC----CCCC--TTCCC---HHHHHHHHHCSSCEEEECCCCCC-----
T ss_pred HHHHHHHHHHc---CCCEEEECCC----CCCccccceec---hHHHHHHHhCCCCEEEEccCCccccccC
Confidence 45677777766 6677777553 22221112233 4666778889999999999888774443
No 50
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=21.89 E-value=1e+02 Score=26.05 Aligned_cols=22 Identities=14% Similarity=0.219 Sum_probs=18.5
Q ss_pred ceEEEEcCCCCce-EEEEecCCC
Q 025662 88 QWALGIDPDLSGA-LAVLKSDHN 109 (249)
Q Consensus 88 m~ILGIDPGl~Ga-~avL~~~g~ 109 (249)
|.+||||=|.+.. +++++.++.
T Consensus 2 M~~lgiDiGgt~~~~~l~d~~g~ 24 (299)
T 2e2o_A 2 MIIVGVDAGGTKTKAVAYDCEGN 24 (299)
T ss_dssp CCEEEEEECSSCEEEEEECTTSC
T ss_pred eEEEEEEeCCCcEEEEEEcCCCC
Confidence 4799999999999 888877764
No 51
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=21.75 E-value=55 Score=28.99 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=19.9
Q ss_pred CCCceEEEEcCCCCce-EEEEecCCCCceeeeee
Q 025662 85 ADSQWALGIDPDLSGA-LAVLKSDHNGCSAEVFD 117 (249)
Q Consensus 85 ~~~m~ILGIDPGl~Ga-~avL~~~g~g~~~~v~D 117 (249)
..+|.|||||=|++-+ +|+.+. + ..+++.
T Consensus 20 ~~~~~viGID~GTt~s~va~~~~-g---~~~ii~ 49 (404)
T 3i33_A 20 FQSMPAIGIDLGTTYSCVGVFQH-G---KVEIIA 49 (404)
T ss_dssp ---CCCEEEEECSSEEEEEEEET-T---EEEECC
T ss_pred hccCCEEEEEcCCccEEEEEEEC-C---eeEEEE
Confidence 4567799999999999 888763 3 355553
No 52
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=21.71 E-value=70 Score=27.97 Aligned_cols=54 Identities=19% Similarity=0.118 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCce-EEEEecCCCCceeeeeeCCCccccccc-----chhhhhhHHHHHHHHHhc
Q 025662 88 QWALGIDPDLSGA-LAVLKSDHNGCSAEVFDTPHLPVLVGK-----RVRKRLDAKSMIMLLRSL 145 (249)
Q Consensus 88 m~ILGIDPGl~Ga-~avL~~~g~g~~~~v~D~pti~v~~g~-----~~R~r~d~~~L~~lL~~~ 145 (249)
..++|||=|++.. +++++ ++ ..++..++..+++.+. -.-.....+.+.+++.+.
T Consensus 13 ~~~vgiDiGt~~i~~~~~~-~~---~~~i~~~g~~~~ps~~~~~g~i~d~~~~~~~ik~~~~~~ 72 (377)
T 2ych_A 13 VEALGLEIGASALKLVEVS-GN---PPALKALASRPTPPGLLMEGMVAEPAALAQEIKELLLEA 72 (377)
T ss_dssp CCCEEEEECSSEEEEEEEE-TT---TTEEEEEEEEECCTTSEETTEESCHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCeEEEEEEe-CC---ceEEEEEEeEECCCCcccCCCcCCHHHHHHHHHHHHHHc
Confidence 3589999999988 66676 33 2344444443322221 122334455566666664
No 53
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=21.40 E-value=1.3e+02 Score=25.26 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=18.4
Q ss_pred ceEEEEcCCCCce-EEEEecCCC
Q 025662 88 QWALGIDPDLSGA-LAVLKSDHN 109 (249)
Q Consensus 88 m~ILGIDPGl~Ga-~avL~~~g~ 109 (249)
|.+||||=|-+.. +++++.++.
T Consensus 1 m~~lgidiggt~~~~~l~d~~g~ 23 (289)
T 2aa4_A 1 MTTLAIDIGGTKLAAALIGADGQ 23 (289)
T ss_dssp CCEEEEEECSSEEEEEEECTTCC
T ss_pred CeEEEEEeCCCEEEEEEECCCCC
Confidence 5689999999999 888877664
Done!