Query 025663
Match_columns 249
No_of_seqs 278 out of 1358
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 14:56:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025663.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025663hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mm2_A MI2-beta; PHD, zinc fin 99.6 9.1E-16 3.1E-20 107.3 4.5 53 54-109 4-56 (61)
2 1xwh_A Autoimmune regulator; P 99.6 8.4E-16 2.9E-20 109.1 3.5 55 56-113 5-59 (66)
3 2yql_A PHD finger protein 21A; 99.6 9.2E-16 3.2E-20 105.5 3.4 51 55-108 5-55 (56)
4 1f62_A Transcription factor WS 99.6 1E-15 3.5E-20 103.1 3.2 49 61-109 2-50 (51)
5 2lri_C Autoimmune regulator; Z 99.5 2E-15 7E-20 107.2 4.0 54 54-110 7-60 (66)
6 2l5u_A Chromodomain-helicase-D 99.5 2.3E-15 8E-20 105.3 3.3 53 54-109 6-58 (61)
7 1fp0_A KAP-1 corepressor; PHD 99.5 6E-15 2.1E-19 110.2 5.4 53 54-109 20-72 (88)
8 2puy_A PHD finger protein 21A; 99.5 3E-15 1E-19 104.2 2.8 51 56-109 2-52 (60)
9 2e6r_A Jumonji/ARID domain-con 99.5 2.7E-15 9.2E-20 113.3 2.5 54 56-109 13-66 (92)
10 2yt5_A Metal-response element- 99.5 6.7E-15 2.3E-19 104.2 2.0 55 56-110 3-62 (66)
11 2e6s_A E3 ubiquitin-protein li 99.5 2.6E-14 8.8E-19 104.5 4.2 50 59-108 26-76 (77)
12 3asl_A E3 ubiquitin-protein li 99.5 2E-14 6.9E-19 103.2 3.3 49 61-109 20-69 (70)
13 2k16_A Transcription initiatio 99.4 3E-14 1E-18 103.3 3.2 57 53-109 12-68 (75)
14 1wev_A Riken cDNA 1110020M19; 99.4 1.7E-14 5.9E-19 108.0 1.9 53 57-109 14-72 (88)
15 2l43_A N-teminal domain from h 99.4 1.4E-14 4.9E-19 108.4 0.9 57 57-115 23-81 (88)
16 3u5n_A E3 ubiquitin-protein li 99.4 4.8E-14 1.7E-18 120.8 3.9 54 54-110 2-55 (207)
17 2ku3_A Bromodomain-containing 99.4 2.8E-14 9.6E-19 102.7 1.7 53 55-109 12-66 (71)
18 3shb_A E3 ubiquitin-protein li 99.4 7.9E-14 2.7E-18 101.9 3.1 49 60-108 27-76 (77)
19 3o36_A Transcription intermedi 99.4 1.5E-13 5.2E-18 115.6 4.7 52 57-111 2-53 (184)
20 1wen_A Inhibitor of growth fam 99.3 1.4E-12 4.6E-17 93.9 5.1 49 57-109 14-65 (71)
21 1weu_A Inhibitor of growth fam 99.3 1.2E-12 4.3E-17 98.3 4.5 50 57-110 34-86 (91)
22 3ask_A E3 ubiquitin-protein li 99.3 7.3E-13 2.5E-17 114.6 3.5 50 59-108 174-224 (226)
23 2kwj_A Zinc finger protein DPF 99.3 6.1E-13 2.1E-17 104.0 2.7 50 60-109 59-108 (114)
24 2lv9_A Histone-lysine N-methyl 99.3 2.1E-12 7E-17 98.5 4.9 51 57-109 26-76 (98)
25 3v43_A Histone acetyltransfera 99.3 2.6E-12 9.1E-17 100.0 4.4 49 60-108 62-111 (112)
26 2ro1_A Transcription intermedi 99.3 2.1E-12 7.3E-17 109.3 4.0 48 59-109 2-49 (189)
27 2vnf_A ING 4, P29ING4, inhibit 99.3 1.1E-12 3.8E-17 91.3 1.8 49 57-109 8-59 (60)
28 3c6w_A P28ING5, inhibitor of g 99.3 1.2E-12 4.3E-17 90.8 1.9 49 57-109 7-58 (59)
29 4gne_A Histone-lysine N-methyl 99.2 2.7E-12 9.2E-17 99.3 3.3 52 53-109 9-62 (107)
30 2jmi_A Protein YNG1, ING1 homo 99.2 4.1E-12 1.4E-16 95.3 2.9 50 55-108 22-75 (90)
31 2ysm_A Myeloid/lymphoid or mix 99.2 5.1E-12 1.7E-16 98.0 2.9 50 60-109 55-104 (111)
32 2g6q_A Inhibitor of growth pro 99.2 5.2E-12 1.8E-16 88.5 2.0 48 58-109 10-60 (62)
33 3o70_A PHD finger protein 13; 99.0 7.9E-11 2.7E-15 83.9 3.3 52 56-109 16-67 (68)
34 1we9_A PHD finger family prote 99.0 1.1E-10 3.8E-15 81.8 2.5 54 56-109 3-58 (64)
35 1wee_A PHD finger family prote 99.0 1.1E-10 3.8E-15 83.8 2.5 55 56-111 13-68 (72)
36 2lbm_A Transcriptional regulat 99.0 7.3E-11 2.5E-15 95.5 0.8 53 54-109 58-117 (142)
37 2ysm_A Myeloid/lymphoid or mix 99.0 4E-10 1.4E-14 87.2 4.6 52 56-107 4-55 (111)
38 1x4i_A Inhibitor of growth pro 99.0 1.3E-10 4.3E-15 83.3 1.6 49 57-109 4-55 (70)
39 1wem_A Death associated transc 99.0 6.1E-11 2.1E-15 86.0 -0.3 57 55-112 12-73 (76)
40 1wew_A DNA-binding family prot 98.9 4.3E-10 1.5E-14 82.0 2.6 51 57-110 14-73 (78)
41 3o7a_A PHD finger protein 13 v 98.9 5.4E-10 1.8E-14 75.3 2.4 48 59-108 4-51 (52)
42 2rsd_A E3 SUMO-protein ligase 98.8 9.7E-10 3.3E-14 78.1 2.8 51 58-109 9-65 (68)
43 2vpb_A Hpygo1, pygopus homolog 98.8 4E-10 1.4E-14 79.6 -0.2 53 56-108 5-65 (65)
44 1wep_A PHF8; structural genomi 98.8 6.9E-10 2.4E-14 81.1 0.9 55 56-111 9-65 (79)
45 3kqi_A GRC5, PHD finger protei 98.8 9.9E-10 3.4E-14 79.5 0.7 53 56-109 7-61 (75)
46 2xb1_A Pygopus homolog 2, B-ce 98.7 1.6E-09 5.3E-14 83.5 1.2 51 59-109 3-61 (105)
47 3ql9_A Transcriptional regulat 98.7 5.8E-10 2E-14 88.8 -1.5 54 53-109 51-111 (129)
48 2ri7_A Nucleosome-remodeling f 98.7 1.3E-09 4.5E-14 90.4 -0.9 53 56-109 5-59 (174)
49 2kgg_A Histone demethylase jar 98.6 3E-09 1E-13 71.6 -0.0 47 61-107 4-52 (52)
50 2kwj_A Zinc finger protein DPF 98.4 3.4E-08 1.2E-12 76.9 0.2 48 60-107 2-59 (114)
51 3kv5_D JMJC domain-containing 98.3 5.6E-08 1.9E-12 93.0 -0.7 55 56-111 34-90 (488)
52 3lqh_A Histone-lysine N-methyl 98.3 2.1E-07 7.2E-12 78.2 2.7 52 60-111 3-65 (183)
53 3v43_A Histone acetyltransfera 98.3 9.3E-08 3.2E-12 74.1 -0.4 49 59-107 5-62 (112)
54 3kv4_A PHD finger protein 8; e 98.1 1.8E-07 6.1E-12 88.5 -2.6 53 60-113 6-60 (447)
55 3pur_A Lysine-specific demethy 98.0 1.6E-06 5.4E-11 83.1 1.2 44 70-113 54-98 (528)
56 1wil_A KIAA1045 protein; ring 97.9 3.1E-06 1E-10 62.0 1.6 52 57-109 13-76 (89)
57 4bbq_A Lysine-specific demethy 97.2 7.7E-05 2.6E-09 57.6 1.4 39 71-109 72-114 (117)
58 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.0 0.00017 5.7E-09 56.0 1.6 37 73-109 1-44 (140)
59 3a1b_A DNA (cytosine-5)-methyl 95.4 0.0032 1.1E-07 51.4 0.4 53 54-109 74-134 (159)
60 4gne_A Histone-lysine N-methyl 94.9 0.011 3.9E-07 45.1 2.2 38 62-103 61-98 (107)
61 3rsn_A SET1/ASH2 histone methy 94.4 0.032 1.1E-06 46.3 4.0 50 59-109 5-59 (177)
62 2pv0_B DNA (cytosine-5)-methyl 94.0 0.0066 2.3E-07 56.2 -1.0 53 54-109 88-148 (386)
63 2l0b_A E3 ubiquitin-protein li 93.3 0.02 6.9E-07 41.7 0.8 50 56-109 37-86 (91)
64 1vyx_A ORF K3, K3RING; zinc-bi 93.2 0.011 3.8E-07 40.2 -0.8 52 56-109 3-56 (60)
65 2kiz_A E3 ubiquitin-protein li 92.7 0.02 7E-07 39.0 0.0 51 55-109 10-60 (69)
66 1iym_A EL5; ring-H2 finger, ub 92.4 0.061 2.1E-06 34.8 2.0 48 58-109 4-52 (55)
67 2d8s_A Cellular modulator of i 92.1 0.064 2.2E-06 38.5 2.0 52 56-109 12-67 (80)
68 1x4j_A Ring finger protein 38; 91.7 0.024 8.4E-07 39.4 -0.7 49 57-109 21-69 (75)
69 2ect_A Ring finger protein 126 90.6 0.19 6.6E-06 34.8 3.2 49 57-109 13-61 (78)
70 3k1l_B Fancl; UBC, ring, RWD, 89.5 0.13 4.4E-06 47.1 1.9 53 57-109 306-370 (381)
71 2ecm_A Ring finger and CHY zin 89.3 0.078 2.7E-06 34.2 0.2 48 58-109 4-52 (55)
72 2ecl_A Ring-box protein 2; RNF 88.9 0.13 4.6E-06 36.4 1.3 48 58-109 14-73 (81)
73 1v87_A Deltex protein 2; ring- 88.2 0.18 6E-06 37.7 1.6 51 59-109 25-91 (114)
74 2ct0_A Non-SMC element 1 homol 88.0 0.21 7E-06 35.4 1.7 49 57-109 13-61 (74)
75 2ep4_A Ring finger protein 24; 87.0 0.095 3.2E-06 36.1 -0.5 48 58-109 14-61 (74)
76 4bbq_A Lysine-specific demethy 86.8 0.13 4.4E-06 39.1 0.1 36 60-109 8-43 (117)
77 1weq_A PHD finger protein 7; s 82.6 0.77 2.6E-05 33.4 2.6 34 72-108 44-78 (85)
78 3dpl_R Ring-box protein 1; ubi 80.7 0.42 1.5E-05 35.9 0.6 48 58-109 36-98 (106)
79 4a0k_B E3 ubiquitin-protein li 79.4 0.41 1.4E-05 36.8 0.2 48 58-109 47-109 (117)
80 1bor_A Transcription factor PM 78.4 2 6.8E-05 27.8 3.4 44 56-109 3-46 (56)
81 2egp_A Tripartite motif-contai 78.3 3 0.0001 28.4 4.5 50 58-110 11-63 (79)
82 2ecy_A TNF receptor-associated 77.5 0.96 3.3E-05 30.2 1.6 47 57-109 13-59 (66)
83 2ecj_A Tripartite motif-contai 77.1 1.2 4.2E-05 28.5 2.0 45 58-106 14-58 (58)
84 2d8t_A Dactylidin, ring finger 75.8 0.65 2.2E-05 31.6 0.4 46 57-109 13-58 (71)
85 2ysl_A Tripartite motif-contai 75.1 1.1 3.7E-05 30.3 1.4 49 57-109 18-66 (73)
86 2ea6_A Ring finger protein 4; 72.7 0.48 1.6E-05 31.6 -1.0 49 57-109 13-65 (69)
87 1e4u_A Transcriptional repress 72.3 2.2 7.5E-05 30.0 2.5 50 57-110 9-60 (78)
88 2lq6_A Bromodomain-containing 72.0 1.2 4.2E-05 32.3 1.1 31 59-90 17-49 (87)
89 3nw0_A Non-structural maintena 71.7 1.3 4.3E-05 38.1 1.3 48 58-109 179-226 (238)
90 3ng2_A RNF4, snurf, ring finge 71.1 0.51 1.7E-05 31.8 -1.1 49 57-109 8-60 (71)
91 2ct2_A Tripartite motif protei 70.5 1.2 4E-05 31.2 0.7 52 57-109 13-65 (88)
92 2ecn_A Ring finger protein 141 70.0 0.84 2.9E-05 30.7 -0.2 45 57-109 13-57 (70)
93 2ysj_A Tripartite motif-contai 67.8 0.78 2.7E-05 30.2 -0.7 46 57-106 18-63 (63)
94 3lrq_A E3 ubiquitin-protein li 67.7 0.81 2.8E-05 33.5 -0.7 47 58-109 21-67 (100)
95 2csy_A Zinc finger protein 183 67.3 1.1 3.9E-05 31.1 0.0 47 56-109 12-58 (81)
96 2ckl_B Ubiquitin ligase protei 67.1 0.94 3.2E-05 36.1 -0.5 47 58-109 53-99 (165)
97 3l11_A E3 ubiquitin-protein li 67.0 2 6.8E-05 31.9 1.3 47 57-109 13-59 (115)
98 2kn9_A Rubredoxin; metalloprot 66.8 4.8 0.00016 28.9 3.3 19 90-109 51-69 (81)
99 2djb_A Polycomb group ring fin 66.0 1.9 6.5E-05 29.2 1.0 47 57-109 13-59 (72)
100 2ecv_A Tripartite motif-contai 64.7 2 6.9E-05 29.5 0.9 49 58-109 18-68 (85)
101 1e8j_A Rubredoxin; iron-sulfur 64.2 7.1 0.00024 25.5 3.5 16 93-109 30-45 (52)
102 2d8v_A Zinc finger FYVE domain 64.0 3.4 0.00012 28.6 1.9 33 55-108 4-36 (67)
103 1chc_A Equine herpes virus-1 r 64.0 1.1 3.9E-05 29.8 -0.5 46 58-109 4-49 (68)
104 1s24_A Rubredoxin 2; electron 61.6 4.1 0.00014 29.7 2.1 20 89-109 58-77 (87)
105 2yur_A Retinoblastoma-binding 61.5 2.4 8.2E-05 28.9 0.8 49 57-109 13-61 (74)
106 2xeu_A Ring finger protein 4; 61.2 0.55 1.9E-05 30.8 -2.5 47 59-109 3-53 (64)
107 1yk4_A Rubredoxin, RD; electro 60.8 6.2 0.00021 25.8 2.7 15 94-109 30-44 (52)
108 1dx8_A Rubredoxin; electron tr 60.5 5.9 0.0002 27.5 2.7 16 93-109 34-49 (70)
109 1jm7_A BRCA1, breast cancer ty 59.5 2.7 9.2E-05 30.7 0.8 47 59-109 21-67 (112)
110 2ecw_A Tripartite motif-contai 59.2 2 6.8E-05 29.5 0.0 49 58-109 18-68 (85)
111 4ayc_A E3 ubiquitin-protein li 58.9 1.4 4.8E-05 34.1 -0.9 44 59-109 53-96 (138)
112 2v3b_B Rubredoxin 2, rubredoxi 57.8 7.3 0.00025 25.7 2.7 15 94-109 31-45 (55)
113 4rxn_A Rubredoxin; electron tr 57.1 6.2 0.00021 26.1 2.2 14 95-109 32-45 (54)
114 3fl2_A E3 ubiquitin-protein li 56.9 1.1 3.7E-05 33.9 -1.9 46 58-109 51-96 (124)
115 2k1p_A Zinc finger RAN-binding 56.5 4.3 0.00015 23.9 1.2 13 97-109 3-15 (33)
116 2a20_A Regulating synaptic mem 55.2 2 6.9E-05 29.1 -0.5 53 57-109 7-60 (62)
117 2lk0_A RNA-binding protein 5; 54.8 2.9 0.0001 24.5 0.3 11 98-108 3-13 (32)
118 4ap4_A E3 ubiquitin ligase RNF 53.9 1.1 3.9E-05 33.5 -2.2 49 57-109 70-122 (133)
119 1t1h_A Gspef-atpub14, armadill 51.2 2.5 8.7E-05 28.9 -0.5 47 57-109 6-52 (78)
120 1faq_A RAF-1; transferase, ser 51.0 7.9 0.00027 24.5 2.0 30 59-90 14-43 (52)
121 2ckl_A Polycomb group ring fin 50.5 4.3 0.00015 29.7 0.6 46 58-109 14-59 (108)
122 1g25_A CDK-activating kinase a 49.4 4.3 0.00015 26.7 0.4 48 59-109 3-52 (65)
123 2y43_A E3 ubiquitin-protein li 47.7 3.6 0.00012 29.5 -0.2 46 58-109 21-66 (99)
124 1weo_A Cellulose synthase, cat 46.1 3 0.0001 30.6 -0.8 49 58-109 15-67 (93)
125 1jm7_B BARD1, BRCA1-associated 45.4 17 0.00057 26.9 3.3 43 59-109 22-64 (117)
126 1kbe_A Kinase suppressor of RA 44.4 9 0.00031 24.6 1.4 29 60-90 15-43 (49)
127 1v5n_A PDI-like hypothetical p 42.6 9.1 0.00031 27.6 1.3 32 60-92 48-79 (89)
128 6rxn_A Rubredoxin; electron tr 42.6 17 0.00057 23.1 2.4 15 94-109 25-39 (46)
129 2enn_A NPKC-theta, protein kin 41.3 12 0.00042 26.0 1.8 33 59-91 34-68 (77)
130 2fnf_X Putative RAS effector N 37.9 17 0.00058 25.0 2.1 31 59-90 35-65 (72)
131 3ztg_A E3 ubiquitin-protein li 36.6 6.7 0.00023 27.5 -0.2 49 57-109 11-59 (92)
132 1z6u_A NP95-like ring finger p 36.1 3.9 0.00013 32.2 -1.7 46 58-109 77-122 (150)
133 4b2u_A S67; toxin, ICK; NMR {S 36.1 9.9 0.00034 22.2 0.5 12 98-109 16-27 (36)
134 2yuu_A NPKC-delta, protein kin 35.5 19 0.00066 25.2 2.1 32 59-90 28-61 (83)
135 2enz_A NPKC-theta, protein kin 34.4 25 0.00086 23.3 2.5 32 59-90 23-56 (65)
136 1ptq_A Protein kinase C delta 33.5 16 0.00054 22.8 1.3 32 59-90 11-44 (50)
137 2js4_A UPF0434 protein BB2007; 33.2 16 0.00054 25.3 1.3 29 59-87 8-39 (70)
138 1pft_A TFIIB, PFTFIIBN; N-term 33.0 24 0.00082 22.2 2.1 27 60-86 6-36 (50)
139 2hf1_A Tetraacyldisaccharide-1 33.0 16 0.00055 25.1 1.3 28 59-86 8-38 (68)
140 2co8_A NEDD9 interacting prote 32.9 34 0.0012 23.5 3.1 30 59-90 15-44 (82)
141 2pk7_A Uncharacterized protein 32.6 17 0.00059 25.0 1.4 28 59-86 8-38 (69)
142 1zfo_A LAsp-1; LIM domain, zin 32.5 16 0.00054 20.9 1.0 28 60-89 4-31 (31)
143 2jr6_A UPF0434 protein NMA0874 32.3 17 0.00057 25.0 1.3 29 59-87 8-39 (68)
144 2y1n_A E3 ubiquitin-protein li 31.7 6.6 0.00023 36.1 -1.1 45 59-109 332-376 (389)
145 2eli_A Protein kinase C alpha 30.8 27 0.00092 24.6 2.2 32 59-90 28-61 (85)
146 2e61_A Zinc finger CW-type PWW 30.5 29 0.00099 23.9 2.3 32 72-105 16-49 (69)
147 2k0a_A PRE-mRNA-splicing facto 30.4 9.2 0.00031 28.7 -0.4 51 58-108 28-80 (109)
148 2jny_A Uncharacterized BCR; st 29.9 20 0.00067 24.6 1.3 29 59-87 10-41 (67)
149 1zbd_B Rabphilin-3A; G protein 29.9 19 0.00066 27.9 1.4 53 57-109 53-107 (134)
150 2zet_C Melanophilin; complex, 29.5 23 0.00079 28.2 1.8 50 57-109 66-117 (153)
151 2cu8_A Cysteine-rich protein 2 28.7 30 0.001 23.2 2.1 30 59-90 9-38 (76)
152 1rfh_A RAS association (ralgds 28.0 17 0.00057 23.9 0.6 31 59-90 22-52 (59)
153 2hfr_A Fowlicidin-3, cathelici 27.6 18 0.00061 20.0 0.6 10 159-168 1-10 (27)
154 1n0z_A ZNF265; zinc finger, RN 26.5 21 0.00073 22.4 0.9 14 96-109 10-25 (45)
155 1y8f_A UNC-13 homolog A, MUNC1 26.4 23 0.00078 23.7 1.1 32 59-90 24-57 (66)
156 2ea5_A Cell growth regulator w 24.9 39 0.0013 22.6 2.1 45 54-109 10-55 (68)
157 4b2v_A S64; toxin, ICK; NMR {S 24.9 35 0.0012 19.4 1.5 12 98-109 16-27 (32)
158 3uej_A NPKC-delta, protein kin 24.4 27 0.00093 23.1 1.2 32 59-90 20-53 (65)
159 2fiy_A Protein FDHE homolog; F 24.4 29 0.00098 30.8 1.7 41 57-109 180-231 (309)
160 3hct_A TNF receptor-associated 23.3 6.3 0.00021 29.3 -2.5 47 57-109 16-62 (118)
161 1yuz_A Nigerythrin; rubrythrin 23.1 41 0.0014 27.8 2.3 26 73-109 170-195 (202)
162 2l7p_A Histone-lysine N-methyl 23.0 20 0.00067 26.7 0.3 32 72-105 26-58 (100)
163 2d8y_A Eplin protein; LIM doma 22.9 47 0.0016 23.1 2.3 30 59-90 15-44 (91)
164 4ic3_A E3 ubiquitin-protein li 22.8 33 0.0011 23.1 1.4 40 59-109 24-64 (74)
165 4cpa_I Metallocarboxypeptidase 20.7 55 0.0019 19.6 1.9 12 98-109 19-30 (38)
166 2db6_A SH3 and cysteine rich d 20.4 20 0.00069 24.6 -0.1 32 59-90 28-61 (74)
167 2vje_B MDM4 protein; proto-onc 20.4 9.3 0.00032 25.3 -1.9 49 56-109 4-53 (63)
No 1
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.58 E-value=9.1e-16 Score=107.35 Aligned_cols=53 Identities=40% Similarity=0.979 Sum_probs=48.3
Q ss_pred ccccccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 54 RGDYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 54 ~~~~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
+++.++.+|.+|+.+ ++||+||.|+++||++|++|++..+|.|+|+|+.|...
T Consensus 4 ~~d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 4 GSDHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSCSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cccCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 445668899999986 89999999999999999999999999999999999865
No 2
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.57 E-value=8.4e-16 Score=109.13 Aligned_cols=55 Identities=35% Similarity=0.883 Sum_probs=49.0
Q ss_pred ccccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccCCccc
Q 025663 56 DYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQRRVR 113 (249)
Q Consensus 56 ~~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~~~~~ 113 (249)
+.++.+|.+|+.+ ++||+||.|+++||+.|++|++..+|.|+|+|+.|...+..+
T Consensus 5 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~~ 59 (66)
T 1xwh_A 5 QKNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 59 (66)
T ss_dssp CSCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCCC
T ss_pred CCCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCccccc
Confidence 3467899999987 799999999999999999999999999999999999764433
No 3
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=9.2e-16 Score=105.46 Aligned_cols=51 Identities=33% Similarity=0.982 Sum_probs=46.9
Q ss_pred cccccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCccccc
Q 025663 55 GDYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSG 108 (249)
Q Consensus 55 ~~~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~ 108 (249)
.+.++.+|.+|+.+ +.||+||.|+++||+.|++|++..+|.+.|+|+.|..
T Consensus 5 ~~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 44567899999987 7999999999999999999999999999999999975
No 4
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.56 E-value=1e-15 Score=103.10 Aligned_cols=49 Identities=43% Similarity=1.114 Sum_probs=45.8
Q ss_pred cccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 61 GCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 61 ~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.|.+|+++++.+.||+||.|+++||+.|++|++..+|+|+|+|+.|...
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 6999999888889999999999999999999999999999999999753
No 5
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.55 E-value=2e-15 Score=107.20 Aligned_cols=54 Identities=30% Similarity=0.665 Sum_probs=47.5
Q ss_pred ccccccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccCC
Q 025663 54 RGDYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQR 110 (249)
Q Consensus 54 ~~~~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~~ 110 (249)
+.......|.+|+++ ++||+||.|+++||++|++|+|..+|.|+|+|+.|....
T Consensus 7 ~~~~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 7 QNLAPGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred cCCCCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 334456789999976 789999999999999999999999999999999998653
No 6
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=2.3e-15 Score=105.27 Aligned_cols=53 Identities=38% Similarity=0.953 Sum_probs=47.8
Q ss_pred ccccccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 54 RGDYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 54 ~~~~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.++.++.+|.+|+.+ ++||+||.|+++||+.|++|++..+|+|+|+|+.|...
T Consensus 6 ~~~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 6 YETDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CSSCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred ccCCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 345567899999986 89999999999999999999999999999999999864
No 7
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.53 E-value=6e-15 Score=110.20 Aligned_cols=53 Identities=28% Similarity=0.700 Sum_probs=48.5
Q ss_pred ccccccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 54 RGDYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 54 ~~~~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
..+.++.+|.+|+.+ ++||+||.|+++||++|+.|++..+|.|+|+|+.|...
T Consensus 20 ~~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 20 TLDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred ccCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 345667899999988 78999999999999999999999999999999999865
No 8
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.52 E-value=3e-15 Score=104.22 Aligned_cols=51 Identities=35% Similarity=0.996 Sum_probs=46.7
Q ss_pred ccccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 56 DYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 56 ~~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
+.++.+|.+|+.+ ++||+||.|+++||+.|++|++..+|.|.|+|+.|...
T Consensus 2 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 2 MIHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 3457899999987 89999999999999999999999999999999999864
No 9
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.7e-15 Score=113.28 Aligned_cols=54 Identities=37% Similarity=0.934 Sum_probs=49.3
Q ss_pred ccccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 56 DYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 56 ~~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
..++.+|.+|+.+++.+.||+||.|+++||+.|++|||..+|.++|+|+.|...
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 345678999999977789999999999999999999999999999999999864
No 10
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.48 E-value=6.7e-15 Score=104.16 Aligned_cols=55 Identities=27% Similarity=0.698 Sum_probs=47.8
Q ss_pred cccccccccccccc--CCCCceeecccCCcccccccCCcCCC--C-CCCCccCcccccCC
Q 025663 56 DYGDVGCEQCGSGE--RAEELLLCDKCDKGFHMKCLRPIVVR--V-PIGTWLCPKCSGQR 110 (249)
Q Consensus 56 ~~~~~~C~vC~~~~--~~~~~l~CD~C~~~fH~~Cl~P~l~~--~-p~g~W~Cp~C~~~~ 110 (249)
+.++.+|.+|+.++ +.+.||+||.|+++||++|++|++.. + |.+.|+|+.|...+
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 45578999999874 45899999999999999999999886 3 88999999998753
No 11
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2.6e-14 Score=104.48 Aligned_cols=50 Identities=36% Similarity=0.988 Sum_probs=46.5
Q ss_pred cccccccccccCCCCceeecccCCcccccccCCcCCCCCCC-CccCccccc
Q 025663 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIG-TWLCPKCSG 108 (249)
Q Consensus 59 ~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g-~W~Cp~C~~ 108 (249)
+..|.+|+..++.+.||+||.|+++||++|++|||..+|+| +|+|+.|..
T Consensus 26 ~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 34899999988889999999999999999999999999999 999999974
No 12
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.46 E-value=2e-14 Score=103.19 Aligned_cols=49 Identities=39% Similarity=1.097 Sum_probs=45.1
Q ss_pred cccccccccCCCCceeecccCCcccccccCCcCCCCCCC-CccCcccccC
Q 025663 61 GCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIG-TWLCPKCSGQ 109 (249)
Q Consensus 61 ~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g-~W~Cp~C~~~ 109 (249)
.|.+|++.++.+.||+||.|+++||++|++|||..+|+| +|+|+.|...
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 677889887789999999999999999999999999999 9999999853
No 13
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.44 E-value=3e-14 Score=103.28 Aligned_cols=57 Identities=23% Similarity=0.614 Sum_probs=49.7
Q ss_pred cccccccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 53 ERGDYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 53 ~~~~~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
++.+.+..+|.+|++.++.+.||+||.|+.|||+.|+++++...+.+.|+|+.|...
T Consensus 12 ~~~~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 12 DEWGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp CSSSCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred cccCCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 444556788999999987678999999999999999999888888889999999864
No 14
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.44 E-value=1.7e-14 Score=107.96 Aligned_cols=53 Identities=26% Similarity=0.694 Sum_probs=47.2
Q ss_pred cccccccccccccC--CCCceeecccCCcccccccCCcCCC----CCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGER--AEELLLCDKCDKGFHMKCLRPIVVR----VPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~--~~~~l~CD~C~~~fH~~Cl~P~l~~----~p~g~W~Cp~C~~~ 109 (249)
+++.+|.+|+.++. .+.||+||.|+++||++|++|+|.. +|.|.|+|+.|...
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 34689999999864 4799999999999999999999985 89999999999864
No 15
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.43 E-value=1.4e-14 Score=108.45 Aligned_cols=57 Identities=32% Similarity=0.764 Sum_probs=47.8
Q ss_pred ccccccccccccc--CCCCceeecccCCcccccccCCcCCCCCCCCccCcccccCCccccc
Q 025663 57 YGDVGCEQCGSGE--RAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQRRVRSF 115 (249)
Q Consensus 57 ~~~~~C~vC~~~~--~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~~~~~~~ 115 (249)
+++.+|.+|+.++ +.+.||+||.|+.+||+.|++|++ +|.|+|||+.|........+
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~~~~~~ 81 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQSRARPAL 81 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHHTTSCC-
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccCccchhhh
Confidence 4568999999885 556999999999999999999874 89999999999976544433
No 16
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.43 E-value=4.8e-14 Score=120.80 Aligned_cols=54 Identities=35% Similarity=0.878 Sum_probs=48.5
Q ss_pred ccccccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccCC
Q 025663 54 RGDYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQR 110 (249)
Q Consensus 54 ~~~~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~~ 110 (249)
+++.++.+|.+|+.+ |+||+||.|+++||+.|++|++..+|.|.|+|+.|....
T Consensus 2 ~~d~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 2 DDDPNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp -CCSSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 455677899999987 789999999999999999999999999999999999753
No 17
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.42 E-value=2.8e-14 Score=102.71 Aligned_cols=53 Identities=32% Similarity=0.739 Sum_probs=46.4
Q ss_pred ccccccccccccccc--CCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 55 GDYGDVGCEQCGSGE--RAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 55 ~~~~~~~C~vC~~~~--~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
...++..|.+|+.++ +.+.||+||.|+++||++|++|+ .+|+|+|||+.|...
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~--~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS--SCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC--cCCCCCcCCccCcCc
Confidence 445678999999885 67899999999999999999987 489999999999864
No 18
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.40 E-value=7.9e-14 Score=101.86 Aligned_cols=49 Identities=39% Similarity=1.091 Sum_probs=45.1
Q ss_pred ccccccccccCCCCceeecccCCcccccccCCcCCCCCCCC-ccCccccc
Q 025663 60 VGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGT-WLCPKCSG 108 (249)
Q Consensus 60 ~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~-W~Cp~C~~ 108 (249)
-.|.+|++.++.+.||+||.|+++||++|++|||..+|+|+ |+|+.|+.
T Consensus 27 C~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 27 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TSBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CcCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46888999888899999999999999999999999999998 99999974
No 19
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.39 E-value=1.5e-13 Score=115.56 Aligned_cols=52 Identities=37% Similarity=0.904 Sum_probs=47.3
Q ss_pred cccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccCCc
Q 025663 57 YGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQRR 111 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~~~ 111 (249)
.++++|.+|+++ |+||+||.|+++||+.|++|++..+|.|.|+|+.|.....
T Consensus 2 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 2 PNEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 356889999987 8899999999999999999999999999999999997643
No 20
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=99.32 E-value=1.4e-12 Score=93.87 Aligned_cols=49 Identities=33% Similarity=0.879 Sum_probs=42.3
Q ss_pred cccccccccccccCCCCceeecc--cC-CcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGERAEELLLCDK--CD-KGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD~--C~-~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.+..+| +|++... +.||.||. |+ .|||+.|++ |...|.+.|||+.|...
T Consensus 14 ~~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 346778 8999754 79999999 77 699999999 88899999999999875
No 21
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.31 E-value=1.2e-12 Score=98.32 Aligned_cols=50 Identities=32% Similarity=0.860 Sum_probs=42.6
Q ss_pred cccccccccccccCCCCceeecc--cC-CcccccccCCcCCCCCCCCccCcccccCC
Q 025663 57 YGDVGCEQCGSGERAEELLLCDK--CD-KGFHMKCLRPIVVRVPIGTWLCPKCSGQR 110 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD~--C~-~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~~ 110 (249)
.+..+| +|++... +.||.||. |+ .|||+.|++ |...|.+.|||+.|...+
T Consensus 34 ~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 345778 9999754 79999999 77 699999999 788889999999998753
No 22
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=99.30 E-value=7.3e-13 Score=114.65 Aligned_cols=50 Identities=38% Similarity=1.050 Sum_probs=42.5
Q ss_pred cccccccccccCCCCceeecccCCcccccccCCcCCCCCCC-CccCccccc
Q 025663 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIG-TWLCPKCSG 108 (249)
Q Consensus 59 ~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g-~W~Cp~C~~ 108 (249)
+..|.+|+..++.+.||+||.|+++||+.|++|||..+|.| +|+|+.|..
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 45799999988889999999999999999999999999999 999999975
No 23
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.30 E-value=6.1e-13 Score=103.99 Aligned_cols=50 Identities=44% Similarity=1.076 Sum_probs=46.2
Q ss_pred ccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 60 VGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 60 ~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
..|.+|+..++.+.||+||.|+++||++|++|||..+|+|+|+|+.|...
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccch
Confidence 36889999878899999999999999999999999999999999999754
No 24
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.29 E-value=2.1e-12 Score=98.47 Aligned_cols=51 Identities=27% Similarity=0.637 Sum_probs=44.2
Q ss_pred cccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
++...| +|+..++.+.||+||.|+.|||+.|++|++..+|. .|+|+.|...
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~-~w~C~~C~~~ 76 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYLCERCQPR 76 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCS-SBCCTTTSSS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCC-CEECCCCcCC
Confidence 334567 89998888999999999999999999999888885 8999999754
No 25
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.26 E-value=2.6e-12 Score=100.00 Aligned_cols=49 Identities=41% Similarity=1.127 Sum_probs=44.1
Q ss_pred ccccccccc-cCCCCceeecccCCcccccccCCcCCCCCCCCccCccccc
Q 025663 60 VGCEQCGSG-ERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSG 108 (249)
Q Consensus 60 ~~C~vC~~~-~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~ 108 (249)
.+|.+|+.. .+.++||+||.|+++||++|++|+|..+|+|+|+|+.|..
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 478888875 4567999999999999999999999999999999999975
No 26
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.26 E-value=2.1e-12 Score=109.30 Aligned_cols=48 Identities=29% Similarity=0.789 Sum_probs=45.1
Q ss_pred cccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 59 ~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
++.|.+|+.+ |++|+||.|+++||+.|+.|++..+|.|+|+|+.|...
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4689999987 78999999999999999999999999999999999875
No 27
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=99.26 E-value=1.1e-12 Score=91.28 Aligned_cols=49 Identities=33% Similarity=0.879 Sum_probs=40.8
Q ss_pred cccccccccccccCCCCceeecc--cC-CcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGERAEELLLCDK--CD-KGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD~--C~-~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.+..+| +|++... +.||.||. |. .|||+.|++ |..+|.|.|+|+.|..+
T Consensus 8 ~e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 8 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 59 (60)
T ss_dssp -CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC-
T ss_pred CCCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccCc
Confidence 345677 8999754 78999999 66 799999999 88899999999999754
No 28
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=99.25 E-value=1.2e-12 Score=90.76 Aligned_cols=49 Identities=31% Similarity=0.853 Sum_probs=41.4
Q ss_pred cccccccccccccCCCCceeecc--cC-CcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGERAEELLLCDK--CD-KGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD~--C~-~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.+..+| +|++.+ .++||.||. |+ .|||+.|++ |...|.|.|+|+.|..+
T Consensus 7 ~e~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 7 NEPTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQE 58 (59)
T ss_dssp -CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHCC
T ss_pred CCCcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccCc
Confidence 345677 999975 378999999 77 699999999 88889999999999764
No 29
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=99.24 E-value=2.7e-12 Score=99.28 Aligned_cols=52 Identities=38% Similarity=0.912 Sum_probs=45.1
Q ss_pred cccccccccccccccccCCCCceeec--ccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 53 ERGDYGDVGCEQCGSGERAEELLLCD--KCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 53 ~~~~~~~~~C~vC~~~~~~~~~l~CD--~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
+....++.+|.+|+.+ |+||+|| .|++|||+.|++ |..+|+|+|+||.|...
T Consensus 9 ~~~~~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCD 62 (107)
T ss_dssp -CCCSSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred CCcCCCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCC
Confidence 3445667899999976 8999999 899999999999 89999999999988753
No 30
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=99.21 E-value=4.1e-12 Score=95.29 Aligned_cols=50 Identities=28% Similarity=0.723 Sum_probs=41.1
Q ss_pred cccccccccccccccCCCCceeecccC---CcccccccCCcCCCCCCCCccCcc-ccc
Q 025663 55 GDYGDVGCEQCGSGERAEELLLCDKCD---KGFHMKCLRPIVVRVPIGTWLCPK-CSG 108 (249)
Q Consensus 55 ~~~~~~~C~vC~~~~~~~~~l~CD~C~---~~fH~~Cl~P~l~~~p~g~W~Cp~-C~~ 108 (249)
++++..+| +|++.+. ++||.||.|+ .|||+.|++ |...|.+.|||+. |..
T Consensus 22 ~~~~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 22 NNQEEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp --CCSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCCCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 33446778 9998754 6899999976 899999999 7888899999999 974
No 31
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.20 E-value=5.1e-12 Score=97.98 Aligned_cols=50 Identities=36% Similarity=0.959 Sum_probs=45.9
Q ss_pred ccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 60 VGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 60 ~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.+|.+|+..++...||+||.|+++||++|++|++..+|+++|+|+.|...
T Consensus 55 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 55 KVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred CcccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 36889999877788999999999999999999999999999999999864
No 32
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=99.18 E-value=5.2e-12 Score=88.47 Aligned_cols=48 Identities=35% Similarity=0.931 Sum_probs=40.8
Q ss_pred ccccccccccccCCCCceeecc--cC-CcccccccCCcCCCCCCCCccCcccccC
Q 025663 58 GDVGCEQCGSGERAEELLLCDK--CD-KGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 58 ~~~~C~vC~~~~~~~~~l~CD~--C~-~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
+..+| +|++... ++||.||. |. .|||+.|++ |...|.+.|+||.|..+
T Consensus 10 e~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 35677 9999743 78999999 55 899999999 77888999999999865
No 33
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=99.05 E-value=7.9e-11 Score=83.88 Aligned_cols=52 Identities=25% Similarity=0.596 Sum_probs=42.8
Q ss_pred ccccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 56 DYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 56 ~~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
+.+..+| +|++.++.+.||.||.|..|||..|++.....+| +.|+|+.|...
T Consensus 16 ~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~~s 67 (68)
T 3o70_A 16 FQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRDS 67 (68)
T ss_dssp TTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC-SSCCCHHHHTC
T ss_pred CCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCC-CcEECCCCCCC
Confidence 3446778 9999877678999999999999999996655454 58999999764
No 34
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.00 E-value=1.1e-10 Score=81.81 Aligned_cols=54 Identities=31% Similarity=0.677 Sum_probs=43.0
Q ss_pred ccccccccccccccC-CCCceeecccCCcccccccCCcCCCCC-CCCccCcccccC
Q 025663 56 DYGDVGCEQCGSGER-AEELLLCDKCDKGFHMKCLRPIVVRVP-IGTWLCPKCSGQ 109 (249)
Q Consensus 56 ~~~~~~C~vC~~~~~-~~~~l~CD~C~~~fH~~Cl~P~l~~~p-~g~W~Cp~C~~~ 109 (249)
+++..+|.+|++..+ .+.||.||.|+.|||..|++....... ...|+|+.|..+
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 345688999999864 578999999999999999995433322 358999999875
No 35
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.00 E-value=1.1e-10 Score=83.82 Aligned_cols=55 Identities=25% Similarity=0.585 Sum_probs=42.4
Q ss_pred ccccccccccccccCCC-CceeecccCCcccccccCCcCCCCCCCCccCcccccCCc
Q 025663 56 DYGDVGCEQCGSGERAE-ELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQRR 111 (249)
Q Consensus 56 ~~~~~~C~vC~~~~~~~-~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~~~ 111 (249)
+....+| +|+..++.+ .||.||.|..|||..|++..........|+|+.|.....
T Consensus 13 ~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ 68 (72)
T 1wee_A 13 DNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSG 68 (72)
T ss_dssp CSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCS
T ss_pred CCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCC
Confidence 4446788 799986555 799999999999999999654322346899999986543
No 36
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.98 E-value=7.3e-11 Score=95.47 Aligned_cols=53 Identities=30% Similarity=0.653 Sum_probs=47.0
Q ss_pred ccccccccccccccccCCCCceeecccCCcccccccCCcCCC-------CCCCCccCcccccC
Q 025663 54 RGDYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVR-------VPIGTWLCPKCSGQ 109 (249)
Q Consensus 54 ~~~~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~-------~p~g~W~Cp~C~~~ 109 (249)
++|.++.+|.+|+.+ |++++||.|++.||..|+.|++.. .|.++|.|+.|...
T Consensus 58 d~Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CTTSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred cCCCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 446668999999998 899999999999999999999862 58899999999864
No 37
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.97 E-value=4e-10 Score=87.22 Aligned_cols=52 Identities=25% Similarity=0.692 Sum_probs=46.3
Q ss_pred ccccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccc
Q 025663 56 DYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCS 107 (249)
Q Consensus 56 ~~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~ 107 (249)
+.++++|.+|+.+++.++||+|+.|++.||..|+++++..++.+.|+|+.|.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4567899999998766778999999999999999998887888999999986
No 38
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=1.3e-10 Score=83.30 Aligned_cols=49 Identities=31% Similarity=0.762 Sum_probs=40.7
Q ss_pred cccccccccccccCCCCceeecccC---CcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGERAEELLLCDKCD---KGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD~C~---~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.+..+| +|++.+ .+.||.||.|+ .|||+.|++ |...|.+.|+|+.|...
T Consensus 4 ~~~~yC-~C~~~~-~g~MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 4 GSSGYC-ICNQVS-YGEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAA 55 (70)
T ss_dssp SCCCCS-TTSCCC-CSSEECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHH
T ss_pred CCCeEE-EcCCCC-CCCEeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCCcc
Confidence 345677 699874 46999999975 799999999 77788999999999864
No 39
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.96 E-value=6.1e-11 Score=86.01 Aligned_cols=57 Identities=23% Similarity=0.512 Sum_probs=43.6
Q ss_pred cccccccccccccccCCCCceeecccCCcccccccCCcCCCC-----CCCCccCcccccCCcc
Q 025663 55 GDYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRV-----PIGTWLCPKCSGQRRV 112 (249)
Q Consensus 55 ~~~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~-----p~g~W~Cp~C~~~~~~ 112 (249)
.+.+..+| +|++.++.+.||.||.|..|||..|++...... ....|+|+.|.....+
T Consensus 12 ~d~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 12 YDPNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCTTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred cCCCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 34446778 899998778999999999999999999432211 2468999999876443
No 40
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.90 E-value=4.3e-10 Score=82.01 Aligned_cols=51 Identities=22% Similarity=0.569 Sum_probs=41.4
Q ss_pred cccccccccccccCCCCceeec--ccCCcccccccCCcCCCCC-------CCCccCcccccCC
Q 025663 57 YGDVGCEQCGSGERAEELLLCD--KCDKGFHMKCLRPIVVRVP-------IGTWLCPKCSGQR 110 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD--~C~~~fH~~Cl~P~l~~~p-------~g~W~Cp~C~~~~ 110 (249)
.+..+| +|+..++.+.||.|| .|..|||..|++. ...+ ...|+|+.|...+
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi--~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVIL--PDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSC--CCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEcc--ccccccccccCCCCEECCCCCccc
Confidence 345778 899997789999999 9999999999994 4333 2489999998753
No 41
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=98.89 E-value=5.4e-10 Score=75.32 Aligned_cols=48 Identities=25% Similarity=0.641 Sum_probs=39.4
Q ss_pred cccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCccccc
Q 025663 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSG 108 (249)
Q Consensus 59 ~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~ 108 (249)
..+| +|++.++.+.||.||.|..|||..|++.....+| +.|+|+.|..
T Consensus 4 ~~~C-~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~~ 51 (52)
T 3o7a_A 4 LVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 51 (52)
T ss_dssp CBCS-TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC-SSCCCHHHHT
T ss_pred CeEE-EeCCcCCCCCEEEcCCCCccccccccCCCcccCC-CcEECcCCCC
Confidence 3456 8999877779999999999999999996554444 5899999964
No 42
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=98.85 E-value=9.7e-10 Score=78.08 Aligned_cols=51 Identities=20% Similarity=0.444 Sum_probs=38.5
Q ss_pred ccccccccccccCCCCceeecc--cCCcccccccCCcCCCC----CCCCccCcccccC
Q 025663 58 GDVGCEQCGSGERAEELLLCDK--CDKGFHMKCLRPIVVRV----PIGTWLCPKCSGQ 109 (249)
Q Consensus 58 ~~~~C~vC~~~~~~~~~l~CD~--C~~~fH~~Cl~P~l~~~----p~g~W~Cp~C~~~ 109 (249)
+..+| +|+...+.+.||.||. |..|||..|++...... ....|+|+.|+..
T Consensus 9 ~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp CEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred CCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCc
Confidence 34667 8999888899999995 99999999999432211 1136999999753
No 43
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=98.82 E-value=4e-10 Score=79.56 Aligned_cols=53 Identities=23% Similarity=0.536 Sum_probs=39.9
Q ss_pred ccccccccccccccC-CCCceeec-ccCCcccccccCCcCC------CCCCCCccCccccc
Q 025663 56 DYGDVGCEQCGSGER-AEELLLCD-KCDKGFHMKCLRPIVV------RVPIGTWLCPKCSG 108 (249)
Q Consensus 56 ~~~~~~C~vC~~~~~-~~~~l~CD-~C~~~fH~~Cl~P~l~------~~p~g~W~Cp~C~~ 108 (249)
++....|.+|+++.+ ...||.|| .|..|||..|++.... ..|.+.|+|+.|.+
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 344678999999864 46899999 9999999999994321 13677999999963
No 44
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.81 E-value=6.9e-10 Score=81.07 Aligned_cols=55 Identities=22% Similarity=0.446 Sum_probs=42.0
Q ss_pred ccccccccccccccC-CCCceeecccCCcccccccCCcCCCC-CCCCccCcccccCCc
Q 025663 56 DYGDVGCEQCGSGER-AEELLLCDKCDKGFHMKCLRPIVVRV-PIGTWLCPKCSGQRR 111 (249)
Q Consensus 56 ~~~~~~C~vC~~~~~-~~~~l~CD~C~~~fH~~Cl~P~l~~~-p~g~W~Cp~C~~~~~ 111 (249)
+.+..+| +|+...+ .+.||.||.|..|||..|++...... ....|+|+.|.....
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 3445677 9999864 68999999999999999999433222 135899999997643
No 45
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=98.77 E-value=9.9e-10 Score=79.47 Aligned_cols=53 Identities=25% Similarity=0.512 Sum_probs=40.6
Q ss_pred ccccccccccccccC-CCCceeecccCCcccccccCCcCCCCCC-CCccCcccccC
Q 025663 56 DYGDVGCEQCGSGER-AEELLLCDKCDKGFHMKCLRPIVVRVPI-GTWLCPKCSGQ 109 (249)
Q Consensus 56 ~~~~~~C~vC~~~~~-~~~~l~CD~C~~~fH~~Cl~P~l~~~p~-g~W~Cp~C~~~ 109 (249)
+.+..+| +|+...+ .+.||.||.|..|||..|++......+. ..|+|+.|...
T Consensus 7 ~~~~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 7 ATVPVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCCCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CCCeeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 3445666 9999864 5799999999999999999944333332 57999999865
No 46
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=98.75 E-value=1.6e-09 Score=83.45 Aligned_cols=51 Identities=25% Similarity=0.608 Sum_probs=40.7
Q ss_pred ccccccccccc-CCCCceeec-ccCCcccccccCCcCC------CCCCCCccCcccccC
Q 025663 59 DVGCEQCGSGE-RAEELLLCD-KCDKGFHMKCLRPIVV------RVPIGTWLCPKCSGQ 109 (249)
Q Consensus 59 ~~~C~vC~~~~-~~~~~l~CD-~C~~~fH~~Cl~P~l~------~~p~g~W~Cp~C~~~ 109 (249)
...|.+|++.. +.+.||.|| .|+.|||..|++.... ..|.+.|+|+.|...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 35799999985 446899998 9999999999994321 136678999999975
No 47
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.74 E-value=5.8e-10 Score=88.75 Aligned_cols=54 Identities=28% Similarity=0.650 Sum_probs=45.9
Q ss_pred cccccccccccccccccCCCCceeecccCCcccccccCCcCC-----CC--CCCCccCcccccC
Q 025663 53 ERGDYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVV-----RV--PIGTWLCPKCSGQ 109 (249)
Q Consensus 53 ~~~~~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~-----~~--p~g~W~Cp~C~~~ 109 (249)
.++|.++.+|.+|+.+ |++++||.|++.||..|+.|++. .+ |.+.|+|..|...
T Consensus 51 ~d~Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 51 RDSDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp BCTTSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred cCCCCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3446667899999998 99999999999999999998853 33 7889999999764
No 48
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=98.69 E-value=1.3e-09 Score=90.37 Aligned_cols=53 Identities=23% Similarity=0.642 Sum_probs=41.0
Q ss_pred ccccccccccccccC-CCCceeecccCCcccccccCCcCCC-CCCCCccCcccccC
Q 025663 56 DYGDVGCEQCGSGER-AEELLLCDKCDKGFHMKCLRPIVVR-VPIGTWLCPKCSGQ 109 (249)
Q Consensus 56 ~~~~~~C~vC~~~~~-~~~~l~CD~C~~~fH~~Cl~P~l~~-~p~g~W~Cp~C~~~ 109 (249)
+++..+| +|+++++ .+.||+||.|+.|||..|++..... ...+.|+|+.|...
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 3456889 9999854 6789999999999999999954322 23568999999864
No 49
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=98.65 E-value=3e-09 Score=71.63 Aligned_cols=47 Identities=21% Similarity=0.561 Sum_probs=36.0
Q ss_pred cccccccccC-CCCceeec-ccCCcccccccCCcCCCCCCCCccCcccc
Q 025663 61 GCEQCGSGER-AEELLLCD-KCDKGFHMKCLRPIVVRVPIGTWLCPKCS 107 (249)
Q Consensus 61 ~C~vC~~~~~-~~~~l~CD-~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~ 107 (249)
.|.+|+++.+ .+.||.|| .|+.|||..|++..........|+|+.|.
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778999874 56799999 89999999999943222223689999994
No 50
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.41 E-value=3.4e-08 Score=76.88 Aligned_cols=48 Identities=33% Similarity=0.735 Sum_probs=39.8
Q ss_pred cccccccccc-------CCCCceeecccCCcccccccCCcCC---CCCCCCccCcccc
Q 025663 60 VGCEQCGSGE-------RAEELLLCDKCDKGFHMKCLRPIVV---RVPIGTWLCPKCS 107 (249)
Q Consensus 60 ~~C~vC~~~~-------~~~~~l~CD~C~~~fH~~Cl~P~l~---~~p~g~W~Cp~C~ 107 (249)
.+|.+|..+. +.++||.|+.|++.||..|+++.+. .++.+.|+|+.|.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 5799998754 3479999999999999999997643 4678899999995
No 51
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=98.32 E-value=5.6e-08 Score=92.97 Aligned_cols=55 Identities=24% Similarity=0.459 Sum_probs=41.1
Q ss_pred ccccccccccccccC-CCCceeecccCCcccccccCCcCCCCC-CCCccCcccccCCc
Q 025663 56 DYGDVGCEQCGSGER-AEELLLCDKCDKGFHMKCLRPIVVRVP-IGTWLCPKCSGQRR 111 (249)
Q Consensus 56 ~~~~~~C~vC~~~~~-~~~~l~CD~C~~~fH~~Cl~P~l~~~p-~g~W~Cp~C~~~~~ 111 (249)
+.+..+| +|++.++ .+.||.||.|+.|||..|++....... .+.|+|+.|....+
T Consensus 34 ~~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 34 PPPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp CCCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred CCCCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence 3445667 9999854 689999999999999999994322222 24799999987543
No 52
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=98.31 E-value=2.1e-07 Score=78.22 Aligned_cols=52 Identities=23% Similarity=0.555 Sum_probs=40.0
Q ss_pred ccccccccccCCCC----ceeecccCCcccccccCCcCC------CCCC-CCccCcccccCCc
Q 025663 60 VGCEQCGSGERAEE----LLLCDKCDKGFHMKCLRPIVV------RVPI-GTWLCPKCSGQRR 111 (249)
Q Consensus 60 ~~C~vC~~~~~~~~----~l~CD~C~~~fH~~Cl~P~l~------~~p~-g~W~Cp~C~~~~~ 111 (249)
.+|.+|++..++++ ||.||.|+.|||..|++.... ..|+ ..|+|+.|....+
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 47999999876654 999999999999999994321 1232 3799999997643
No 53
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.26 E-value=9.3e-08 Score=74.11 Aligned_cols=49 Identities=33% Similarity=0.672 Sum_probs=39.5
Q ss_pred ccccccccccc------CCCCceeecccCCcccccccCCc--C-CCCCCCCccCcccc
Q 025663 59 DVGCEQCGSGE------RAEELLLCDKCDKGFHMKCLRPI--V-VRVPIGTWLCPKCS 107 (249)
Q Consensus 59 ~~~C~vC~~~~------~~~~~l~CD~C~~~fH~~Cl~P~--l-~~~p~g~W~Cp~C~ 107 (249)
..+|.+|...+ ..++||.|+.|++.||.+|++.. + ..++.+.|+|+.|.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 46899998753 45799999999999999999842 2 24678899999996
No 54
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=98.08 E-value=1.8e-07 Score=88.50 Aligned_cols=53 Identities=25% Similarity=0.521 Sum_probs=39.8
Q ss_pred ccccccccccC-CCCceeecccCCcccccccCCcCCCCC-CCCccCcccccCCccc
Q 025663 60 VGCEQCGSGER-AEELLLCDKCDKGFHMKCLRPIVVRVP-IGTWLCPKCSGQRRVR 113 (249)
Q Consensus 60 ~~C~vC~~~~~-~~~~l~CD~C~~~fH~~Cl~P~l~~~p-~g~W~Cp~C~~~~~~~ 113 (249)
.+| +|++..+ .+.||.||.|+.|||..|++....... .+.|+|+.|....++.
T Consensus 6 ~yC-iC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~~ 60 (447)
T 3kv4_A 6 VYC-LCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPS 60 (447)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCCC
T ss_pred eEE-eCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccCCc
Confidence 455 9999854 689999999999999999994322222 2579999998764443
No 55
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=97.96 E-value=1.6e-06 Score=83.13 Aligned_cols=44 Identities=20% Similarity=0.479 Sum_probs=32.9
Q ss_pred CCCCceeecccCCcccccccCCcCCC-CCCCCccCcccccCCccc
Q 025663 70 RAEELLLCDKCDKGFHMKCLRPIVVR-VPIGTWLCPKCSGQRRVR 113 (249)
Q Consensus 70 ~~~~~l~CD~C~~~fH~~Cl~P~l~~-~p~g~W~Cp~C~~~~~~~ 113 (249)
....||.||.|+.|||..|++..... ...+.|+||.|....++.
T Consensus 54 ~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~~gps 98 (528)
T 3pur_A 54 NDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHTGHS 98 (528)
T ss_dssp STTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHHHCSC
T ss_pred cCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCCCCCc
Confidence 34689999999999999999944322 223579999998754433
No 56
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.90 E-value=3.1e-06 Score=61.98 Aligned_cols=52 Identities=31% Similarity=0.648 Sum_probs=41.8
Q ss_pred cccccccccccccCCCCceeecccCCcccccccCCc------------CCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPI------------VVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~------------l~~~p~g~W~Cp~C~~~ 109 (249)
.+|..|.||.... .+.++.|..|.+.||..|+.++ +...+...|.|+.|..-
T Consensus 13 ~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL 76 (89)
T 1wil_A 13 VNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 76 (89)
T ss_dssp CCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCC
T ss_pred CCCcccCcccccc-ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchh
Confidence 3578999999753 4789999999999999999875 33445668999999653
No 57
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=97.24 E-value=7.7e-05 Score=57.55 Aligned_cols=39 Identities=28% Similarity=0.606 Sum_probs=29.8
Q ss_pred CCCceeecccCCcccccccCCcCCCCCC----CCccCcccccC
Q 025663 71 AEELLLCDKCDKGFHMKCLRPIVVRVPI----GTWLCPKCSGQ 109 (249)
Q Consensus 71 ~~~~l~CD~C~~~fH~~Cl~P~l~~~p~----g~W~Cp~C~~~ 109 (249)
...||.|+.|+.|||..|+++....+.. +.|+|+.|...
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred CcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 3568999999999999999987554332 35999999865
No 58
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.05 E-value=0.00017 Score=56.04 Aligned_cols=37 Identities=27% Similarity=0.668 Sum_probs=29.2
Q ss_pred CceeecccCCcccccccCCcC------CCCCC-CCccCcccccC
Q 025663 73 ELLLCDKCDKGFHMKCLRPIV------VRVPI-GTWLCPKCSGQ 109 (249)
Q Consensus 73 ~~l~CD~C~~~fH~~Cl~P~l------~~~p~-g~W~Cp~C~~~ 109 (249)
.||.||.|..|||..|.+..- ..+|. ..|.|+.|...
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 489999999999999998432 34453 36999999875
No 59
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=95.36 E-value=0.0032 Score=51.42 Aligned_cols=53 Identities=26% Similarity=0.653 Sum_probs=42.0
Q ss_pred ccccccccccccccccCCCCceeec--ccCCcccccccCCcCCC------CCCCCccCcccccC
Q 025663 54 RGDYGDVGCEQCGSGERAEELLLCD--KCDKGFHMKCLRPIVVR------VPIGTWLCPKCSGQ 109 (249)
Q Consensus 54 ~~~~~~~~C~vC~~~~~~~~~l~CD--~C~~~fH~~Cl~P~l~~------~p~g~W~Cp~C~~~ 109 (249)
++|.-+.+|.+|+.+ +++++|| .|.+.|-..|+.-.+.. .....|.|--|...
T Consensus 74 DeDG~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 74 DDDGYQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp CTTSSBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CCCCCcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 344457899999998 8999999 89999999998743332 33457999999875
No 60
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=94.86 E-value=0.011 Score=45.08 Aligned_cols=38 Identities=24% Similarity=0.652 Sum_probs=31.9
Q ss_pred ccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccC
Q 025663 62 CEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLC 103 (249)
Q Consensus 62 C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~C 103 (249)
|.+|++. ..+.|..|+.+||..|+.+.|...+.+.|+|
T Consensus 61 C~~C~k~----~~~~C~~Cp~sfC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 61 CDECSSA----AVSFCEFCPHSFCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp CTTTCSB----CCEECSSSSCEECTTTCTTSCEECTTTTCEE
T ss_pred CCcCCCC----CCcCcCCCCcchhhhccCCcceecCCCCcee
Confidence 4456654 2389999999999999999999888889997
No 61
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=94.42 E-value=0.032 Score=46.28 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=32.1
Q ss_pred ccccccccccc-CCCCceeecccCCcccccccCCcCCC-CCCC---CccCcccccC
Q 025663 59 DVGCEQCGSGE-RAEELLLCDKCDKGFHMKCLRPIVVR-VPIG---TWLCPKCSGQ 109 (249)
Q Consensus 59 ~~~C~vC~~~~-~~~~~l~CD~C~~~fH~~Cl~P~l~~-~p~g---~W~Cp~C~~~ 109 (249)
..+| -|+... ..-.|+.|+.|.+|||..|+...... +|-. ...|..|...
T Consensus 5 ~~yC-YCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~ 59 (177)
T 3rsn_A 5 AGSV-DEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHS 59 (177)
T ss_dssp -------CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTT
T ss_pred eeEE-EcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCC
Confidence 3466 677754 34589999999999999999855433 3311 3679999764
No 62
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=94.04 E-value=0.0066 Score=56.16 Aligned_cols=53 Identities=28% Similarity=0.711 Sum_probs=41.7
Q ss_pred ccccccccccccccccCCCCceeec--ccCCcccccccCCcCCC------CCCCCccCcccccC
Q 025663 54 RGDYGDVGCEQCGSGERAEELLLCD--KCDKGFHMKCLRPIVVR------VPIGTWLCPKCSGQ 109 (249)
Q Consensus 54 ~~~~~~~~C~vC~~~~~~~~~l~CD--~C~~~fH~~Cl~P~l~~------~p~g~W~Cp~C~~~ 109 (249)
++|.-+.+|.+|+.+ +++++|| .|.+.|-..|+.-.+.. .....|.|--|...
T Consensus 88 D~DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 88 DDDGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp CSSSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 344557899999998 8999999 99999999998844421 22347999999876
No 63
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=93.33 E-value=0.02 Score=41.65 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=36.4
Q ss_pred ccccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 56 DYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 56 ~~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
..++..|.+|......+..+..-.|.-.||..|+..++.. .-.||.|+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 86 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----SGTCPVCRCM 86 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----TCBCTTTCCB
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----CCcCcCcCcc
Confidence 3456789999977555555544459999999999977643 2379999864
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=93.16 E-value=0.011 Score=40.22 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=35.2
Q ss_pred ccccccccccccccCCCCceee--cccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 56 DYGDVGCEQCGSGERAEELLLC--DKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 56 ~~~~~~C~vC~~~~~~~~~l~C--D~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
+++...|.||....+...+.-| .+.-++||..|+...+.. .+.+.|+.|...
T Consensus 3 ~~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~--~~~~~C~~C~~~ 56 (60)
T 1vyx_A 3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI--SRNTACQICGVV 56 (60)
T ss_dssp TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH--HTCSBCTTTCCB
T ss_pred CCCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHh--CCCCccCCCCCe
Confidence 3456789999886443333344 344459999999987643 246899999864
No 65
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=92.73 E-value=0.02 Score=39.03 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=36.1
Q ss_pred cccccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 55 GDYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 55 ~~~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
...++..|.+|......+..+..-.|.-.||..|+...+.. ...||.|+..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~ 60 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPICRVD 60 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCSB
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCcc
Confidence 34446789999876544444555579999999999865543 2369999864
No 66
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=92.37 E-value=0.061 Score=34.75 Aligned_cols=48 Identities=25% Similarity=0.541 Sum_probs=34.2
Q ss_pred ccccccccccccCCCC-ceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 58 GDVGCEQCGSGERAEE-LLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 58 ~~~~C~vC~~~~~~~~-~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
++..|.+|......++ .+....|.-.||..|+...+.. ...||.|+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~ 52 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLT 52 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCE
Confidence 3567999998754433 3444469999999999876643 3579999854
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.08 E-value=0.064 Score=38.49 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=34.4
Q ss_pred ccccccccccccccCC-CCcee-e--cccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 56 DYGDVGCEQCGSGERA-EELLL-C--DKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 56 ~~~~~~C~vC~~~~~~-~~~l~-C--D~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
+.++..|.||...... +.++. | .+....||..|+..++..- +...||.|...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~--~~~~CplCr~~ 67 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS--DTRCCELCKYE 67 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH--CCSBCSSSCCB
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC--CCCCCCCCCCe
Confidence 3445789999976533 34442 2 2234899999999776532 24689999865
No 68
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.66 E-value=0.024 Score=39.40 Aligned_cols=49 Identities=24% Similarity=0.527 Sum_probs=36.2
Q ss_pred cccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.++..|.+|......+..+..-.|.-.||..|+...+.. ...||.|+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~ 69 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRAD 69 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCc
Confidence 446789999987655555555569999999999866543 2479999864
No 69
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=90.58 E-value=0.19 Score=34.80 Aligned_cols=49 Identities=22% Similarity=0.451 Sum_probs=34.7
Q ss_pred cccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.++..|.+|.........+.--.|.-.||..|+...+.. ...||.|+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~ 61 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKS 61 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCc
Confidence 446789999886544444333358889999999866543 2479999875
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=89.49 E-value=0.13 Score=47.11 Aligned_cols=53 Identities=26% Similarity=0.508 Sum_probs=36.7
Q ss_pred cccccccccccccCC-CCc--eeec--ccCCcccccccCCcCCCCCCC-------CccCcccccC
Q 025663 57 YGDVGCEQCGSGERA-EEL--LLCD--KCDKGFHMKCLRPIVVRVPIG-------TWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~-~~~--l~CD--~C~~~fH~~Cl~P~l~~~p~g-------~W~Cp~C~~~ 109 (249)
+....|.+|-..... +.+ ..|+ .|...||..|+..++...+.. .=.||.|...
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~p 370 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAK 370 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCc
Confidence 446789999987544 433 4798 899999999998655433221 1249999864
No 71
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=89.33 E-value=0.078 Score=34.18 Aligned_cols=48 Identities=25% Similarity=0.586 Sum_probs=34.5
Q ss_pred cccccccccccc-CCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 58 GDVGCEQCGSGE-RAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 58 ~~~~C~vC~~~~-~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
++..|.+|.... +.+..+..-.|.-.||..|+...+... ..||.|...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~ 52 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSGP 52 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCCS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCCc
Confidence 457899999864 334456667799999999998554332 579999754
No 72
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.90 E-value=0.13 Score=36.42 Aligned_cols=48 Identities=23% Similarity=0.539 Sum_probs=32.2
Q ss_pred ccccccccccccC-----------CCC-ceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 58 GDVGCEQCGSGER-----------AEE-LLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 58 ~~~~C~vC~~~~~-----------~~~-~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
++..|.+|...-. .++ .+.--.|.-.||..|+...+..-. .||.|+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~ 73 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN----RCPLCQQD 73 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC----BCTTTCCB
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC----CCCCcCCC
Confidence 3456777776532 222 333346999999999998766532 79999865
No 73
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=88.20 E-value=0.18 Score=37.71 Aligned_cols=51 Identities=24% Similarity=0.486 Sum_probs=33.9
Q ss_pred cccccccccccCCC---------------CceeecccCCcccccccCCcCCCCC-CCCccCcccccC
Q 025663 59 DVGCEQCGSGERAE---------------ELLLCDKCDKGFHMKCLRPIVVRVP-IGTWLCPKCSGQ 109 (249)
Q Consensus 59 ~~~C~vC~~~~~~~---------------~~l~CD~C~~~fH~~Cl~P~l~~~p-~g~W~Cp~C~~~ 109 (249)
+..|.||...-... ..+..-.|.-.||..|+...+.... ...-.||.|+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~ 91 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTI 91 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCB
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCc
Confidence 45899998763211 2233456899999999997763221 234579999865
No 74
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.96 E-value=0.21 Score=35.43 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=36.6
Q ss_pred cccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
+....|.+|...... -+.|..|...||..|+.-.+..... =.||.|...
T Consensus 13 ~~i~~C~IC~~~i~~--g~~C~~C~h~fH~~Ci~kWl~~~~~--~~CP~Cr~~ 61 (74)
T 2ct0_A 13 DAVKICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSNAE--PRCPHCNDY 61 (74)
T ss_dssp SSSCBCSSSCCBCSS--SEECSSSCCEECHHHHHHHSTTCSS--CCCTTTCSC
T ss_pred CCCCcCcchhhHccc--CCccCCCCchhhHHHHHHHHHhcCC--CCCCCCcCc
Confidence 345779999987543 3578899999999999977755422 369999854
No 75
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.02 E-value=0.095 Score=36.07 Aligned_cols=48 Identities=25% Similarity=0.414 Sum_probs=33.3
Q ss_pred ccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 58 GDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 58 ~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.+..|.+|.........+.--.|.-.||..|+...+... ..||.|+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~----~~CP~Cr~~ 61 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR----KVCPLCNMP 61 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC----SBCTTTCCB
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC----CcCCCcCcc
Confidence 357899999875444433222588899999998655432 379999864
No 76
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=86.83 E-value=0.13 Score=39.07 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=28.4
Q ss_pred ccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 60 VGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 60 ~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.+|.+|++.+ |+.|+..||..|++++ .|.|..|...
T Consensus 8 ~~C~~C~~~~-------C~~C~~c~~~~~~~~~-------~~~~~~c~~~ 43 (117)
T 4bbq_A 8 RKCKACVQGE-------CGVCHYCRDMKKFGGP-------GRMKQSCVLR 43 (117)
T ss_dssp SCSHHHHSCC-------CSCSHHHHHSGGGTSC-------CCSCCCCGGG
T ss_pred CcCcCcCCcC-------CCCCCCCcCCcccCCC-------Cccccchhhe
Confidence 5788888762 9999999999999865 4777777653
No 77
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.58 E-value=0.77 Score=33.44 Aligned_cols=34 Identities=29% Similarity=0.718 Sum_probs=28.0
Q ss_pred CCceeecccCC-cccccccCCcCCCCCCCCccCccccc
Q 025663 72 EELLLCDKCDK-GFHMKCLRPIVVRVPIGTWLCPKCSG 108 (249)
Q Consensus 72 ~~~l~CD~C~~-~fH~~Cl~P~l~~~p~g~W~Cp~C~~ 108 (249)
-+||+|..|.. +-|..|.. +... ...|.|..|..
T Consensus 44 W~L~lC~~Cgs~gtH~~Cs~--l~~~-~~~weC~~C~~ 78 (85)
T 1weq_A 44 WRLILCATCGSHGTHRDCSS--LRPN-SKKWECNECLP 78 (85)
T ss_dssp TBCEECSSSCCCEECSGGGT--CCTT-CSCCCCTTTSC
T ss_pred EEEEeCcccCCchhHHHHhC--CcCC-CCCEECCcCcc
Confidence 48999999998 99999998 4432 34799999985
No 78
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=80.65 E-value=0.42 Score=35.93 Aligned_cols=48 Identities=17% Similarity=0.367 Sum_probs=32.7
Q ss_pred ccccccccccccCCC---------------CceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 58 GDVGCEQCGSGERAE---------------ELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 58 ~~~~C~vC~~~~~~~---------------~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
++..|.+|....... ..+.--.|.-.||..|+...|.. .-.||.|+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 98 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNRE 98 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT----CSBCSSSCSB
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc----CCcCcCCCCc
Confidence 356788887753211 12333479999999999977654 3469999864
No 79
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=79.44 E-value=0.41 Score=36.80 Aligned_cols=48 Identities=17% Similarity=0.355 Sum_probs=0.9
Q ss_pred ccccccccccccCCC---------------CceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 58 GDVGCEQCGSGERAE---------------ELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 58 ~~~~C~vC~~~~~~~---------------~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
+++.|.||....... ..+.--.|.-.||..|+...+..- -.||.|+..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~~ 109 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNRE 109 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC----CcCCCCCCe
Confidence 456899998753211 111223688899999999776552 369999864
No 80
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=78.36 E-value=2 Score=27.83 Aligned_cols=44 Identities=25% Similarity=0.668 Sum_probs=29.9
Q ss_pred ccccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 56 DYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 56 ~~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
+.++..|.+|......-.++ .|.-.|+..|+.. ....||.|+..
T Consensus 3 e~~~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~-------~~~~CP~Cr~~ 46 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLL---PCLHTLCSGCLEA-------SGMQCPICQAP 46 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCS---TTSCCSBTTTCSS-------SSSSCSSCCSS
T ss_pred cccCCCceEeCCccCCeEEc---CCCCcccHHHHcc-------CCCCCCcCCcE
Confidence 34567899999864333333 4777888888763 24579999865
No 81
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=78.35 E-value=3 Score=28.36 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=34.4
Q ss_pred ccccccccccccCCCCceeecccCCcccccccCCcCCCCC---CCCccCcccccCC
Q 025663 58 GDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVP---IGTWLCPKCSGQR 110 (249)
Q Consensus 58 ~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p---~g~W~Cp~C~~~~ 110 (249)
++..|.+|...-..-.++ .|+-.||..|+...+.... .+.-.||.|...-
T Consensus 11 ~~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSL---DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCCEETTTTEECSSCCCC---SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred cCCCCcCCCcccCCeeEC---CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 457899999864332222 6888999999987665421 2356899998763
No 82
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.55 E-value=0.96 Score=30.15 Aligned_cols=47 Identities=17% Similarity=0.436 Sum_probs=33.1
Q ss_pred cccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.++..|.+|...-....+ -.|+-.||..|+...+. .+...||.|...
T Consensus 13 ~~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 59 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ---TECGHRFCESCMAALLS---SSSPKCTACQES 59 (66)
T ss_dssp CCCEECTTTCCEESSCCC---CSSSCCCCHHHHHHHHT---TSSCCCTTTCCC
T ss_pred CcCCCCCCCChHhcCeeE---CCCCCHHHHHHHHHHHH---hCcCCCCCCCcC
Confidence 345789999986433322 27888999999986654 234579999865
No 83
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.05 E-value=1.2 Score=28.46 Aligned_cols=45 Identities=18% Similarity=0.513 Sum_probs=30.4
Q ss_pred ccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCccc
Q 025663 58 GDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKC 106 (249)
Q Consensus 58 ~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C 106 (249)
++..|.+|........++ .|.-.||..|+...+... .....||.|
T Consensus 14 ~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVII---ECGHNFCKACITRWWEDL-ERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCC---SSCCCCCHHHHHHHTTSS-CCSCCCSCC
T ss_pred cCCCCccCCcccCccEeC---CCCCccCHHHHHHHHHhc-CCCCCCCCC
Confidence 457899999875433332 588889999988664432 235678876
No 84
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.80 E-value=0.65 Score=31.57 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=31.6
Q ss_pred cccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.++..|.+|..... ..+.- .|.-.||..|+...+.. ...||.|+..
T Consensus 13 ~~~~~C~IC~~~~~--~~~~~-~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~ 58 (71)
T 2d8t_A 13 LTVPECAICLQTCV--HPVSL-PCKHVFCYLCVKGASWL----GKRCALCRQE 58 (71)
T ss_dssp SSCCBCSSSSSBCS--SEEEE-TTTEEEEHHHHHHCTTC----SSBCSSSCCB
T ss_pred CCCCCCccCCcccC--CCEEc-cCCCHHHHHHHHHHHHC----CCcCcCcCch
Confidence 34578999997642 22222 58889999998855432 2579999875
No 85
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.14 E-value=1.1 Score=30.29 Aligned_cols=49 Identities=24% Similarity=0.564 Sum_probs=33.6
Q ss_pred cccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.++..|.+|..... +.+++ .|.-.||..|+...+... .+.-.||.|...
T Consensus 18 ~~~~~C~IC~~~~~-~~~~~--~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 18 QEEVICPICLDILQ-KPVTI--DCGHNFCLKCITQIGETS-CGFFKCPLCKTS 66 (73)
T ss_dssp CCCCBCTTTCSBCS-SEEEC--TTCCEEEHHHHHHHCSSS-CSCCCCSSSCCC
T ss_pred ccCCEeccCCcccC-CeEEc--CCCChhhHHHHHHHHHcC-CCCCCCCCCCCc
Confidence 34578999998643 22222 799999999998665421 235679999875
No 86
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.65 E-value=0.48 Score=31.58 Aligned_cols=49 Identities=29% Similarity=0.670 Sum_probs=34.1
Q ss_pred cccccccccccccC----CCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGER----AEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~----~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.++..|.+|..... .+..+.--.|.-.||..|+...+.. .-.||.|...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 65 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKK 65 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----CSSCTTTCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----CCCCCCCCCc
Confidence 34578999998532 2344556689999999999855432 2369999864
No 87
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=72.26 E-value=2.2 Score=30.00 Aligned_cols=50 Identities=22% Similarity=0.451 Sum_probs=32.7
Q ss_pred cccccccccccccCCC--CceeecccCCcccccccCCcCCCCCCCCccCcccccCC
Q 025663 57 YGDVGCEQCGSGERAE--ELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQR 110 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~--~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~~ 110 (249)
.++..|.||...-... .++-| .|+-.|+..|+.-.+. .+...||.|+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~---~~~~~CP~CR~~~ 60 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRT---DENGLCPACRKPY 60 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTT---SSCSBCTTTCCBC
T ss_pred ccCCcCCccCccCcccccccccc-CCCCCcCHHHHHHHHh---cCCCCCCCCCCcc
Confidence 3457899999864322 12223 5888888899874332 2457899999763
No 88
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=72.02 E-value=1.2 Score=32.30 Aligned_cols=31 Identities=26% Similarity=0.712 Sum_probs=24.8
Q ss_pred cccccccccccCCCCceeecc--cCCcccccccC
Q 025663 59 DVGCEQCGSGERAEELLLCDK--CDKGFHMKCLR 90 (249)
Q Consensus 59 ~~~C~vC~~~~~~~~~l~CD~--C~~~fH~~Cl~ 90 (249)
...|.+|++. ..|..|.|.. |..+||..|..
T Consensus 17 ~l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 17 KLTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHH
T ss_pred cCCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHH
Confidence 4679999863 2378899974 99999999975
No 89
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=71.67 E-value=1.3 Score=38.08 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=35.4
Q ss_pred ccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 58 GDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 58 ~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
....|.+|..--- .-+.|..|+..||..|+.-.+... +.-.||.|...
T Consensus 179 ~i~~C~iC~~iv~--~g~~C~~C~~~~H~~C~~~~~~~~--~~~~CP~C~~~ 226 (238)
T 3nw0_A 179 AVKICNICHSLLI--QGQSCETCGIRMHLPCVAKYFQSN--AEPRCPHCNDY 226 (238)
T ss_dssp TCCBCTTTCSBCS--SCEECSSSCCEECHHHHHHHTTTC--SSCBCTTTCCB
T ss_pred CCCcCcchhhHHh--CCcccCccChHHHHHHHHHHHHhC--CCCCCCCCCCC
Confidence 3577999998754 347899999999999997443332 23479999764
No 90
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=71.14 E-value=0.51 Score=31.76 Aligned_cols=49 Identities=29% Similarity=0.666 Sum_probs=34.9
Q ss_pred cccccccccccccC----CCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGER----AEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~----~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.++..|.+|...-. .+..+..-.|+-.||..|+...+... -.||.|...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~ 60 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKK 60 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCCB
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC----CCCCCCCCc
Confidence 34578999997531 24555667899999999998654322 279999875
No 91
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.48 E-value=1.2 Score=31.17 Aligned_cols=52 Identities=23% Similarity=0.408 Sum_probs=34.6
Q ss_pred cccccccccccccCCCCc-eeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGERAEEL-LLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~-l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.+...|.+|......+.. ..--.|.-.||..|+...+... .+...||.|...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS-INGVRCPFCSKI 65 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC-SSCBCCTTTCCC
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC-CCCcCCCCCCCc
Confidence 345789999987543221 2222699999999998655432 234689999875
No 92
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.02 E-value=0.84 Score=30.71 Aligned_cols=45 Identities=27% Similarity=0.491 Sum_probs=32.3
Q ss_pred cccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.++..|.+|...... .--.|.-.||..|+...+. ....||.|+..
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~ 57 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSD----RHRNCPICRLQ 57 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSC----CCSSCHHHHHC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHH----CcCcCCCcCCc
Confidence 345789999987433 2235888899999986654 35689999864
No 93
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.82 E-value=0.78 Score=30.25 Aligned_cols=46 Identities=26% Similarity=0.606 Sum_probs=30.0
Q ss_pred cccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCccc
Q 025663 57 YGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKC 106 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C 106 (249)
.++..|.+|...-. +..++ .|.-.||..|+...+... .+...||.|
T Consensus 18 ~~~~~C~IC~~~~~-~p~~~--~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQ-KPVTI--DCGHNFCLKCITQIGETS-CGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCS-SCEEC--TTSSEECHHHHHHHHHHC-SSCCCCSCC
T ss_pred ccCCCCCcCCchhC-CeEEe--CCCCcchHHHHHHHHHcC-CCCCcCcCC
Confidence 34578999997643 23333 788899999988655421 124568876
No 94
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=67.72 E-value=0.81 Score=33.48 Aligned_cols=47 Identities=23% Similarity=0.524 Sum_probs=35.4
Q ss_pred ccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 58 GDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 58 ~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
++..|.+|...- ..-+.|-.|+-.||..|+...+... ...||.|+..
T Consensus 21 ~~~~C~IC~~~~--~~p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~ 67 (100)
T 3lrq_A 21 EVFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTEQ---RAQCPHCRAP 67 (100)
T ss_dssp HHTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHHHT---CSBCTTTCCB
T ss_pred CCCCCccCCccc--cCccccCCCCChhhHHHHHHHHHHC---cCCCCCCCCc
Confidence 357899999864 3556678899999999998655432 2579999875
No 95
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.29 E-value=1.1 Score=31.07 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=32.3
Q ss_pred ccccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 56 DYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 56 ~~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
..+...|.+|...... . +. -.|.-.||..|+...+.. ...||.|...
T Consensus 12 ~~~~~~C~IC~~~~~~-p-~~-~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~ 58 (81)
T 2csy_A 12 EEIPFRCFICRQAFQN-P-VV-TKCRHYFCESCALEHFRA----TPRCYICDQP 58 (81)
T ss_dssp CCCCSBCSSSCSBCCS-E-EE-CTTSCEEEHHHHHHHHHH----CSBCSSSCCB
T ss_pred CCCCCCCcCCCchhcC-e-eE-ccCCCHhHHHHHHHHHHC----CCcCCCcCcc
Confidence 3446789999886422 2 22 478889999998855432 3479999875
No 96
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=67.06 E-value=0.94 Score=36.06 Aligned_cols=47 Identities=19% Similarity=0.500 Sum_probs=34.5
Q ss_pred ccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 58 GDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 58 ~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
++..|.+|...- ..-+.+..|+-.||..|+...+.. +...||.|...
T Consensus 53 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~ 99 (165)
T 2ckl_B 53 SELMCPICLDML--KNTMTTKECLHRFCADCIITALRS---GNKECPTCRKK 99 (165)
T ss_dssp HHHBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHHT---TCCBCTTTCCB
T ss_pred CCCCCcccChHh--hCcCEeCCCCChhHHHHHHHHHHh---CcCCCCCCCCc
Confidence 356899998763 334555689999999999866542 35679999865
No 97
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=66.97 E-value=2 Score=31.88 Aligned_cols=47 Identities=21% Similarity=0.499 Sum_probs=33.4
Q ss_pred cccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.++..|.+|...-. ...++ .|+-.||..|+...+. .+...||.|...
T Consensus 13 ~~~~~C~iC~~~~~-~p~~~--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 59 (115)
T 3l11_A 13 LSECQCGICMEILV-EPVTL--PCNHTLCKPCFQSTVE---KASLCCPFCRRR 59 (115)
T ss_dssp HHHHBCTTTCSBCS-SCEEC--TTSCEECHHHHCCCCC---TTTSBCTTTCCB
T ss_pred CCCCCCccCCcccC-ceeEc--CCCCHHhHHHHHHHHh---HCcCCCCCCCcc
Confidence 34678999997642 23333 7898999999986553 335789999875
No 98
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=66.78 E-value=4.8 Score=28.90 Aligned_cols=19 Identities=26% Similarity=0.732 Sum_probs=13.1
Q ss_pred CCcCCCCCCCCccCcccccC
Q 025663 90 RPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 90 ~P~l~~~p~g~W~Cp~C~~~ 109 (249)
+.+...+|+ +|.||.|-..
T Consensus 51 GT~fedlPd-dW~CPvCga~ 69 (81)
T 2kn9_A 51 GTRWDDIPD-DWSCPDCGAA 69 (81)
T ss_dssp TCCTTTSCT-TCCCTTTCCC
T ss_pred CCChhHCCC-CCcCCCCCCC
Confidence 333445664 7999999875
No 99
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.04 E-value=1.9 Score=29.21 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=32.2
Q ss_pred cccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.++..|.+|...-. +-+.-..|.-.||..|+...+.. .-.||.|...
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~ 59 (72)
T 2djb_A 13 TPYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYY----SNRCPKCNIV 59 (72)
T ss_dssp CGGGSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHH----CSSCTTTCCC
T ss_pred CCCCCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHc----CCcCCCcCcc
Confidence 34678999987632 23334578889999998754432 2469999865
No 100
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.70 E-value=2 Score=29.51 Aligned_cols=49 Identities=27% Similarity=0.491 Sum_probs=32.6
Q ss_pred ccccccccccccCCCCceeecccCCcccccccCCcCCC--CCCCCccCcccccC
Q 025663 58 GDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVR--VPIGTWLCPKCSGQ 109 (249)
Q Consensus 58 ~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~--~p~g~W~Cp~C~~~ 109 (249)
++..|.+|...... .+++ .|.-.||..|+...+.. ...+...||.|...
T Consensus 18 ~~~~C~IC~~~~~~-p~~~--~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~ 68 (85)
T 2ecv_A 18 EEVTCPICLELLTQ-PLSL--DCGHSFCQACLTANHKKSMLDKGESSCPVCRIS 68 (85)
T ss_dssp CCCCCTTTCSCCSS-CBCC--SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCS
T ss_pred CCCCCCCCCcccCC-ceeC--CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCc
Confidence 35789999986432 2222 68889999998754432 11235689999875
No 101
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=64.19 E-value=7.1 Score=25.49 Aligned_cols=16 Identities=31% Similarity=0.968 Sum_probs=11.8
Q ss_pred CCCCCCCCccCcccccC
Q 025663 93 VVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 93 l~~~p~g~W~Cp~C~~~ 109 (249)
...+|+ +|.||.|-..
T Consensus 30 f~~lP~-dw~CP~Cg~~ 45 (52)
T 1e8j_A 30 FEDLPD-DWACPVCGAS 45 (52)
T ss_dssp TTSSCT-TCCCSSSCCC
T ss_pred hHHCCC-CCcCCCCCCc
Confidence 344554 7999999875
No 102
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=64.02 E-value=3.4 Score=28.56 Aligned_cols=33 Identities=33% Similarity=0.765 Sum_probs=23.1
Q ss_pred cccccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCccccc
Q 025663 55 GDYGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSG 108 (249)
Q Consensus 55 ~~~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~ 108 (249)
++++...|.||... ..|.|-+|+ |+-||..|-.
T Consensus 4 ~~ee~pWC~ICneD----AtlrC~gCd-----------------gDLYC~rC~r 36 (67)
T 2d8v_A 4 GSSGLPWCCICNED----ATLRCAGCD-----------------GDLYCARCFR 36 (67)
T ss_dssp SCCCCSSCTTTCSC----CCEEETTTT-----------------SEEECSSHHH
T ss_pred cCcCCCeeEEeCCC----CeEEecCCC-----------------CceehHHHHH
Confidence 34456789999874 568888884 3567777764
No 103
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=63.99 E-value=1.1 Score=29.79 Aligned_cols=46 Identities=17% Similarity=0.382 Sum_probs=31.4
Q ss_pred ccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 58 GDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 58 ~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.+..|.+|..... .-...-.|.-.||..|+...+.. ...||.|...
T Consensus 4 ~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~ 49 (68)
T 1chc_A 4 VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQ----NPTCPLCKVP 49 (68)
T ss_dssp CCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHH----SCSTTTTCCC
T ss_pred CCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhC----cCcCcCCChh
Confidence 3567999998632 22234468888999999755432 2479999865
No 104
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=61.62 E-value=4.1 Score=29.65 Aligned_cols=20 Identities=25% Similarity=0.732 Sum_probs=13.6
Q ss_pred cCCcCCCCCCCCccCcccccC
Q 025663 89 LRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 89 l~P~l~~~p~g~W~Cp~C~~~ 109 (249)
-+.+...+|+ +|.||.|-..
T Consensus 58 pGT~fedlPd-dW~CPvCga~ 77 (87)
T 1s24_A 58 PGTRFEDIPD-DWCCPDCGAT 77 (87)
T ss_dssp SCCCGGGCCT-TCCCSSSCCC
T ss_pred CCCChhHCCC-CCCCCCCCCC
Confidence 3333445664 7999999875
No 105
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=61.50 E-value=2.4 Score=28.94 Aligned_cols=49 Identities=16% Similarity=0.496 Sum_probs=32.9
Q ss_pred cccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.++..|.+|...-. .-+.-..|.-.||..|+...+... +...||.|...
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~ 61 (74)
T 2yur_A 13 PDELLCLICKDIMT--DAVVIPCCGNSYCDECIRTALLES--DEHTCPTCHQN 61 (74)
T ss_dssp CGGGSCSSSCCCCT--TCEECSSSCCEECTTHHHHHHHHS--SSSCCSSSCCS
T ss_pred CCCCCCcCCChHHh--CCeEcCCCCCHHHHHHHHHHHHhc--CCCcCCCCCCc
Confidence 34678999987642 223334488899999988655422 23579999874
No 106
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=61.19 E-value=0.55 Score=30.77 Aligned_cols=47 Identities=28% Similarity=0.644 Sum_probs=33.0
Q ss_pred cccccccccccC----CCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 59 DVGCEQCGSGER----AEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 59 ~~~C~vC~~~~~----~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
+..|.+|...-. .+..+..-.|+-.||..|+...+.. ...||.|...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 53 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKK 53 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH----CSBCTTTCCB
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc----CCCCCCCCcc
Confidence 467999987531 2344556689999999999855433 2379999865
No 107
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=60.78 E-value=6.2 Score=25.80 Aligned_cols=15 Identities=33% Similarity=1.079 Sum_probs=11.3
Q ss_pred CCCCCCCccCcccccC
Q 025663 94 VRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 94 ~~~p~g~W~Cp~C~~~ 109 (249)
..+|+ +|.||.|-..
T Consensus 30 ~~lP~-dw~CP~Cg~~ 44 (52)
T 1yk4_A 30 EDLPD-DWVCPLCGAP 44 (52)
T ss_dssp GGSCT-TCBCTTTCCB
T ss_pred hHCCC-CCcCCCCCCC
Confidence 34554 7999999875
No 108
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=60.46 E-value=5.9 Score=27.53 Aligned_cols=16 Identities=25% Similarity=0.827 Sum_probs=11.7
Q ss_pred CCCCCCCCccCcccccC
Q 025663 93 VVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 93 l~~~p~g~W~Cp~C~~~ 109 (249)
...+|+ +|.||.|-..
T Consensus 34 f~~lPd-dw~CP~Cga~ 49 (70)
T 1dx8_A 34 FVDLSD-SFMCPACRSP 49 (70)
T ss_dssp GGGSCT-TCBCTTTCCB
T ss_pred hhhCCC-CCcCCCCCCC
Confidence 344554 7999999875
No 109
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=59.47 E-value=2.7 Score=30.70 Aligned_cols=47 Identities=23% Similarity=0.449 Sum_probs=32.2
Q ss_pred cccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 59 ~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
...|.+|...-....++ .|+-.||..|+...+... .+...||.|...
T Consensus 21 ~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~ 67 (112)
T 1jm7_A 21 ILECPICLELIKEPVST---KCDHIFCKFCMLKLLNQK-KGPSQCPLCKND 67 (112)
T ss_dssp HTSCSSSCCCCSSCCBC---TTSCCCCSHHHHHHHHSS-SSSCCCTTTSCC
T ss_pred CCCCcccChhhcCeEEC---CCCCHHHHHHHHHHHHhC-CCCCCCcCCCCc
Confidence 46799999864322222 688899999987654432 234689999865
No 110
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=59.16 E-value=2 Score=29.53 Aligned_cols=49 Identities=20% Similarity=0.405 Sum_probs=32.6
Q ss_pred ccccccccccccCCCCceeecccCCcccccccCCcCCCC--CCCCccCcccccC
Q 025663 58 GDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRV--PIGTWLCPKCSGQ 109 (249)
Q Consensus 58 ~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~--p~g~W~Cp~C~~~ 109 (249)
++..|.+|...... .+ .. .|.-.||..|+...+... ..+...||.|...
T Consensus 18 ~~~~C~IC~~~~~~-p~-~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~ 68 (85)
T 2ecw_A 18 EEVTCPICLELLKE-PV-SA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVP 68 (85)
T ss_dssp TTTSCTTTCSCCSS-CE-EC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCC
T ss_pred cCCCCcCCChhhCc-ce-eC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCc
Confidence 35689999886432 22 22 588899999987544332 1236789999875
No 111
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=58.91 E-value=1.4 Score=34.08 Aligned_cols=44 Identities=20% Similarity=0.499 Sum_probs=30.2
Q ss_pred cccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 59 ~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
+..|.+|...-.. .+.. .|+-.||..|+...+.. .-.||.|...
T Consensus 53 ~~~C~iC~~~~~~--~~~~-~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 96 (138)
T 4ayc_A 53 ELQCIICSEYFIE--AVTL-NCAHSFCSYCINEWMKR----KIECPICRKD 96 (138)
T ss_dssp HSBCTTTCSBCSS--EEEE-TTSCEEEHHHHHHHTTT----CSBCTTTCCB
T ss_pred cCCCcccCcccCC--ceEC-CCCCCccHHHHHHHHHc----CCcCCCCCCc
Confidence 4679999986422 2222 58889999998865543 2469999865
No 112
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=57.84 E-value=7.3 Score=25.74 Aligned_cols=15 Identities=33% Similarity=1.130 Sum_probs=11.3
Q ss_pred CCCCCCCccCcccccC
Q 025663 94 VRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 94 ~~~p~g~W~Cp~C~~~ 109 (249)
..+|+ +|.||.|-..
T Consensus 31 ~~lP~-dw~CP~Cga~ 45 (55)
T 2v3b_B 31 EDIPA-DWVCPDCGVG 45 (55)
T ss_dssp GGSCT-TCCCTTTCCC
T ss_pred hHCCC-CCcCCCCCCC
Confidence 34554 7999999875
No 113
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=57.06 E-value=6.2 Score=26.09 Aligned_cols=14 Identities=36% Similarity=1.123 Sum_probs=10.8
Q ss_pred CCCCCCccCcccccC
Q 025663 95 RVPIGTWLCPKCSGQ 109 (249)
Q Consensus 95 ~~p~g~W~Cp~C~~~ 109 (249)
.+|. +|.||.|-..
T Consensus 32 ~lP~-dw~CP~Cg~~ 45 (54)
T 4rxn_A 32 DIPD-DWVCPLCGVG 45 (54)
T ss_dssp GSCT-TCBCTTTCCB
T ss_pred HCCC-CCcCcCCCCc
Confidence 4554 7999999875
No 114
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=56.93 E-value=1.1 Score=33.93 Aligned_cols=46 Identities=17% Similarity=0.384 Sum_probs=31.9
Q ss_pred ccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 58 GDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 58 ~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
++..|.+|...-. ..+++ .|+-.||..|+...+. .+...||.|...
T Consensus 51 ~~~~C~IC~~~~~-~p~~~--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 96 (124)
T 3fl2_A 51 ETFQCICCQELVF-RPITT--VCQHNVCKDCLDRSFR---AQVFSCPACRYD 96 (124)
T ss_dssp HHTBCTTTSSBCS-SEEEC--TTSCEEEHHHHHHHHH---TTCCBCTTTCCB
T ss_pred cCCCCCcCChHHc-CcEEe--eCCCcccHHHHHHHHh---HCcCCCCCCCcc
Confidence 3567999998633 22222 7888999999986554 234589999875
No 115
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=56.54 E-value=4.3 Score=23.94 Aligned_cols=13 Identities=31% Similarity=0.928 Sum_probs=10.2
Q ss_pred CCCCccCcccccC
Q 025663 97 PIGTWLCPKCSGQ 109 (249)
Q Consensus 97 p~g~W~Cp~C~~~ 109 (249)
..|+|.|+.|-.-
T Consensus 3 ~~gDW~C~~C~~~ 15 (33)
T 2k1p_A 3 SANDWQCKTCSNV 15 (33)
T ss_dssp SSSSCBCSSSCCB
T ss_pred CCCCcccCCCCCc
Confidence 3589999999653
No 116
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=55.21 E-value=2 Score=29.09 Aligned_cols=53 Identities=21% Similarity=0.443 Sum_probs=34.6
Q ss_pred ccccccccccccc-CCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGE-RAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~-~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.+...|.+|.... .+|---.|..|..-|---|-+-......+-.|.|..|..+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRKQ 60 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHHH
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhhc
Confidence 3467899999874 3344457888888777777652211222336999999864
No 117
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=54.79 E-value=2.9 Score=24.51 Aligned_cols=11 Identities=45% Similarity=1.192 Sum_probs=9.1
Q ss_pred CCCccCccccc
Q 025663 98 IGTWLCPKCSG 108 (249)
Q Consensus 98 ~g~W~Cp~C~~ 108 (249)
.|+|.|+.|..
T Consensus 3 ~gDW~C~~C~~ 13 (32)
T 2lk0_A 3 FEDWLCNKCCL 13 (32)
T ss_dssp CSEEECTTTCC
T ss_pred CCCCCcCcCcC
Confidence 47999999965
No 118
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=53.87 E-value=1.1 Score=33.51 Aligned_cols=49 Identities=29% Similarity=0.670 Sum_probs=35.3
Q ss_pred cccccccccccccC----CCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGER----AEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~----~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.+...|.+|...-. .+..+..-.|+-.||..|+...+.. ...||.|+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 122 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKK 122 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH----CSBCTTTCCB
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc----CCCCCCCCCc
Confidence 44677999987531 2344556689999999999976643 2489999865
No 119
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=51.25 E-value=2.5 Score=28.85 Aligned_cols=47 Identities=11% Similarity=0.212 Sum_probs=32.8
Q ss_pred cccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.++..|.+|...-. +.++. .|+-.|+..|+...+. .+...||.|...
T Consensus 6 ~~~~~C~IC~~~~~-~Pv~~--~CgH~fc~~Ci~~~~~---~~~~~CP~C~~~ 52 (78)
T 1t1h_A 6 PEYFRCPISLELMK-DPVIV--STGQTYERSSIQKWLD---AGHKTCPKSQET 52 (78)
T ss_dssp SSSSSCTTTSCCCS-SEEEE--TTTEEEEHHHHHHHHT---TTCCBCTTTCCB
T ss_pred cccCCCCCcccccc-CCEEc--CCCCeecHHHHHHHHH---HCcCCCCCCcCC
Confidence 34678999998632 22222 6888999999886654 245689999865
No 120
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=51.05 E-value=7.9 Score=24.50 Aligned_cols=30 Identities=23% Similarity=0.463 Sum_probs=25.7
Q ss_pred cccccccccccCCCCceeecccCCcccccccC
Q 025663 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLR 90 (249)
Q Consensus 59 ~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~ 90 (249)
-.+|..|++.-. +-+.|..|....|..|..
T Consensus 14 pt~C~~C~~~l~--qG~~C~~C~~~~H~~C~~ 43 (52)
T 1faq_A 14 LAFCDICQKFLL--NGFRCQTCGYKFHEHCST 43 (52)
T ss_dssp CEECTTSSSEEC--SEEECTTTTCCBCSTTSS
T ss_pred CcCCCCcccccc--cCCEeCCCCCeEChhHHh
Confidence 368999988654 778999999999999987
No 121
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=50.51 E-value=4.3 Score=29.70 Aligned_cols=46 Identities=22% Similarity=0.421 Sum_probs=32.7
Q ss_pred ccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 58 GDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 58 ~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
++..|.+|...- ..-+....|+-.||..|+...+.. .-.||.|...
T Consensus 14 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~ 59 (108)
T 2ckl_A 14 PHLMCVLCGGYF--IDATTIIECLHSFCKTCIVRYLET----SKYCPICDVQ 59 (108)
T ss_dssp GGTBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHTS----CSBCTTTCCB
T ss_pred CcCCCccCChHH--hCcCEeCCCCChhhHHHHHHHHHh----CCcCcCCCcc
Confidence 357899998763 233444579999999998855443 2479999865
No 122
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=49.36 E-value=4.3 Score=26.70 Aligned_cols=48 Identities=27% Similarity=0.669 Sum_probs=31.2
Q ss_pred ccccccccc-cc-CCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 59 DVGCEQCGS-GE-RAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 59 ~~~C~vC~~-~~-~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
+..|.+|.. .. ++...+.=-.|+-.||..|+...+.. +...||.|...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~ 52 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR---GAGNCPECGTP 52 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT---TSSSCTTTCCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc---CCCcCCCCCCc
Confidence 467999998 32 22221122479999999998754332 34579999875
No 123
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=47.72 E-value=3.6 Score=29.54 Aligned_cols=46 Identities=17% Similarity=0.437 Sum_probs=32.0
Q ss_pred ccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 58 GDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 58 ~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
++..|.+|...-. .-+..-.|+-.||..|+...+.. .-.||.|...
T Consensus 21 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~ 66 (99)
T 2y43_A 21 DLLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSY----KTQCPTCCVT 66 (99)
T ss_dssp HHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCB
T ss_pred CCCCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHC----CCCCCCCCCc
Confidence 3578999998642 22333468889999998865542 2479999875
No 124
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=46.06 E-value=3 Score=30.62 Aligned_cols=49 Identities=24% Similarity=0.560 Sum_probs=36.7
Q ss_pred cccccccccccc----CCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 58 GDVGCEQCGSGE----RAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 58 ~~~~C~vC~~~~----~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
+..+|.+|+..- +.+..+.|..|....--.|+. -+.-+|.-.||.|...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyE---YErkeG~q~CpqCktr 67 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYE---YERREGTQNCPQCKTR 67 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHH---HHHHTSCSSCTTTCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHH---HHHhccCccccccCCc
Confidence 357999999852 445788999998877777876 2344677899999864
No 125
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=45.36 E-value=17 Score=26.87 Aligned_cols=43 Identities=21% Similarity=0.468 Sum_probs=29.3
Q ss_pred cccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 59 ~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
+..|.+|...-.. ..+ -..|+-.|+..|+.-.+. ..||.|...
T Consensus 22 ~~~C~IC~~~~~~-pv~-~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~ 64 (117)
T 1jm7_B 22 LLRCSRCTNILRE-PVC-LGGCEHIFCSNCVSDCIG------TGCPVCYTP 64 (117)
T ss_dssp TTSCSSSCSCCSS-CBC-CCSSSCCBCTTTGGGGTT------TBCSSSCCB
T ss_pred CCCCCCCChHhhC-ccE-eCCCCCHHHHHHHHHHhc------CCCcCCCCc
Confidence 5789999876422 222 225888888999875443 469999875
No 126
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=44.39 E-value=9 Score=24.64 Aligned_cols=29 Identities=24% Similarity=0.564 Sum_probs=24.7
Q ss_pred ccccccccccCCCCceeecccCCcccccccC
Q 025663 60 VGCEQCGSGERAEELLLCDKCDKGFHMKCLR 90 (249)
Q Consensus 60 ~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~ 90 (249)
..|..|++.-..| +.|..|..-+|..|..
T Consensus 15 t~C~~C~k~i~~G--~kC~~Ck~~cH~kC~~ 43 (49)
T 1kbe_A 15 QVCNVCQKSMIFG--VKCKHCRLKCHNKCTK 43 (49)
T ss_dssp CCCSSSCCSSCCE--EEETTTTEEESSSCTT
T ss_pred cCccccCceeECc--CCCCCCCCccchhhcC
Confidence 5799999876544 7899999999999977
No 127
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=42.63 E-value=9.1 Score=27.60 Aligned_cols=32 Identities=28% Similarity=0.603 Sum_probs=26.1
Q ss_pred ccccccccccCCCCceeecccCCcccccccCCc
Q 025663 60 VGCEQCGSGERAEELLLCDKCDKGFHMKCLRPI 92 (249)
Q Consensus 60 ~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~ 92 (249)
..|.+|+... .+-.-.|+.|+...|..|+..+
T Consensus 48 ~~C~~C~~~~-~~~~Y~C~~C~f~lH~~Ca~~p 79 (89)
T 1v5n_A 48 YTCDKCEEEG-TIWSYHCDECDFDLHAKCALNE 79 (89)
T ss_dssp CCCTTTSCCC-CSCEEECTTTCCCCCHHHHHCS
T ss_pred eEeCCCCCcC-CCcEEEcCCCCCeEcHHhcCCC
Confidence 5799999863 3566689999999999998744
No 128
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=42.62 E-value=17 Score=23.14 Aligned_cols=15 Identities=33% Similarity=0.957 Sum_probs=11.2
Q ss_pred CCCCCCCccCcccccC
Q 025663 94 VRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 94 ~~~p~g~W~Cp~C~~~ 109 (249)
..+|+ +|.||.|-..
T Consensus 25 ~~lP~-dw~CP~Cg~~ 39 (46)
T 6rxn_A 25 DQLPD-DWCCPVCGVS 39 (46)
T ss_dssp GGSCT-TCBCTTTCCB
T ss_pred hhCCC-CCcCcCCCCc
Confidence 34554 7999999865
No 129
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=41.26 E-value=12 Score=25.96 Aligned_cols=33 Identities=21% Similarity=0.518 Sum_probs=27.0
Q ss_pred cccccccccccC--CCCceeecccCCcccccccCC
Q 025663 59 DVGCEQCGSGER--AEELLLCDKCDKGFHMKCLRP 91 (249)
Q Consensus 59 ~~~C~vC~~~~~--~~~~l~CD~C~~~fH~~Cl~P 91 (249)
-.+|.+|+..-. ..+-+.|..|....|-.|+.-
T Consensus 34 pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~ 68 (77)
T 2enn_A 34 PTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDK 68 (77)
T ss_dssp CEECSSSCCEECCTTCCEEECSSSCCEEESGGGSS
T ss_pred CcCccccChhhccccccccCcCCCCCcCCHhHHhh
Confidence 478999998543 357789999999999999873
No 130
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=37.90 E-value=17 Score=25.02 Aligned_cols=31 Identities=26% Similarity=0.592 Sum_probs=26.4
Q ss_pred cccccccccccCCCCceeecccCCcccccccC
Q 025663 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLR 90 (249)
Q Consensus 59 ~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~ 90 (249)
-.+|..|+.-- ..+-+.|..|....|..|..
T Consensus 35 pt~C~~C~~~l-~~qG~kC~~C~~~cHkkC~~ 65 (72)
T 2fnf_X 35 PGWCDLCGREV-LRQALRCANCKFTCHSECRS 65 (72)
T ss_dssp CCBCTTTSSBC-SSCCEECTTSSCEECTGGGG
T ss_pred CcchhhhhHHH-HhCcCccCCCCCeechhhhc
Confidence 47799998865 56778999999999999976
No 131
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=36.57 E-value=6.7 Score=27.54 Aligned_cols=49 Identities=16% Similarity=0.499 Sum_probs=31.9
Q ss_pred cccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.++..|.+|...-. +.+ .-..|+-.|+..|+...+.. .+...||.|...
T Consensus 11 ~~~~~C~IC~~~~~-~p~-~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~Cr~~ 59 (92)
T 3ztg_A 11 PDELLCLICKDIMT-DAV-VIPCCGNSYCDECIRTALLE--SDEHTCPTCHQN 59 (92)
T ss_dssp CTTTEETTTTEECS-SCE-ECTTTCCEECHHHHHHHHHH--CTTCCCTTTCCS
T ss_pred CcCCCCCCCChhhc-Cce-ECCCCCCHHHHHHHHHHHHh--cCCCcCcCCCCc
Confidence 34678999998632 222 22338888888998754432 123589999875
No 132
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=36.08 E-value=3.9 Score=32.21 Aligned_cols=46 Identities=17% Similarity=0.413 Sum_probs=31.5
Q ss_pred ccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 58 GDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 58 ~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
++..|.+|...-. +..+ -.|.-.|+..|+...+.. +...||.|...
T Consensus 77 ~~~~C~IC~~~~~-~pv~--~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~ 122 (150)
T 1z6u_A 77 QSFMCVCCQELVY-QPVT--TECFHNVCKDCLQRSFKA---QVFSCPACRHD 122 (150)
T ss_dssp HHTBCTTTSSBCS-SEEE--CTTSCEEEHHHHHHHHHT---TCCBCTTTCCB
T ss_pred cCCEeecCChhhc-CCEE--cCCCCchhHHHHHHHHHh---CCCcCCCCCcc
Confidence 3567999988632 2222 378888999998755442 34579999875
No 133
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=36.07 E-value=9.9 Score=22.25 Aligned_cols=12 Identities=42% Similarity=1.132 Sum_probs=10.3
Q ss_pred CCCccCcccccC
Q 025663 98 IGTWLCPKCSGQ 109 (249)
Q Consensus 98 ~g~W~Cp~C~~~ 109 (249)
+|+|.|..|+..
T Consensus 16 egdwcchkcvpe 27 (36)
T 4b2u_A 16 EGDWCCHKCVPE 27 (36)
T ss_dssp GCCSSSSEEEEE
T ss_pred ccCeeeeccccc
Confidence 689999999864
No 134
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.54 E-value=19 Score=25.22 Aligned_cols=32 Identities=22% Similarity=0.541 Sum_probs=26.5
Q ss_pred cccccccccccC--CCCceeecccCCcccccccC
Q 025663 59 DVGCEQCGSGER--AEELLLCDKCDKGFHMKCLR 90 (249)
Q Consensus 59 ~~~C~vC~~~~~--~~~~l~CD~C~~~fH~~Cl~ 90 (249)
-.+|..|+..-. ..+-+.|..|....|-.|+.
T Consensus 28 pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~ 61 (83)
T 2yuu_A 28 PTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCID 61 (83)
T ss_dssp CCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGG
T ss_pred CcChhhcChhhccccccccccCCcCCeeChhhhh
Confidence 478999988643 24778999999999999987
No 135
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=34.41 E-value=25 Score=23.34 Aligned_cols=32 Identities=34% Similarity=0.696 Sum_probs=26.2
Q ss_pred cccccccccccC--CCCceeecccCCcccccccC
Q 025663 59 DVGCEQCGSGER--AEELLLCDKCDKGFHMKCLR 90 (249)
Q Consensus 59 ~~~C~vC~~~~~--~~~~l~CD~C~~~fH~~Cl~ 90 (249)
-.+|..|+..-. ..+-+.|..|....|-.|+.
T Consensus 23 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~ 56 (65)
T 2enz_A 23 PTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQT 56 (65)
T ss_dssp CCBCSSSCCBCCCSSSCSEEESSSCCEECTTTTT
T ss_pred CcCchhcChhheecCCcccccCCCCCccCHhHHh
Confidence 378999988543 24778999999999999987
No 136
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=33.52 E-value=16 Score=22.76 Aligned_cols=32 Identities=31% Similarity=0.672 Sum_probs=25.9
Q ss_pred cccccccccccC--CCCceeecccCCcccccccC
Q 025663 59 DVGCEQCGSGER--AEELLLCDKCDKGFHMKCLR 90 (249)
Q Consensus 59 ~~~C~vC~~~~~--~~~~l~CD~C~~~fH~~Cl~ 90 (249)
-.+|..|+..-. ..+-+.|..|....|..|..
T Consensus 11 pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~ 44 (50)
T 1ptq_A 11 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCRE 44 (50)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHT
T ss_pred CCCcCCCCceeeccCCccCEeCCCCCeECHHHhh
Confidence 367999988643 24778999999999999977
No 137
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=33.21 E-value=16 Score=25.29 Aligned_cols=29 Identities=24% Similarity=0.477 Sum_probs=17.8
Q ss_pred ccccccccccc---CCCCceeecccCCccccc
Q 025663 59 DVGCEQCGSGE---RAEELLLCDKCDKGFHMK 87 (249)
Q Consensus 59 ~~~C~vC~~~~---~~~~~l~CD~C~~~fH~~ 87 (249)
-.+|.+|+..= .....+.|..|..+|=..
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCNADRLAFPVR 39 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEETTTTEEEEEE
T ss_pred heECCCCCCcCEEeCCCCEEEcCCCCceecCC
Confidence 35688888741 224556677777766443
No 138
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=33.05 E-value=24 Score=22.15 Aligned_cols=27 Identities=22% Similarity=0.524 Sum_probs=17.3
Q ss_pred ccccccccc----cCCCCceeecccCCcccc
Q 025663 60 VGCEQCGSG----ERAEELLLCDKCDKGFHM 86 (249)
Q Consensus 60 ~~C~vC~~~----~~~~~~l~CD~C~~~fH~ 86 (249)
..|..|+.. +.....+.|..|+..|-.
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBCCC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCcccc
Confidence 468888762 223456778888776643
No 139
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=33.04 E-value=16 Score=25.11 Aligned_cols=28 Identities=18% Similarity=0.434 Sum_probs=16.8
Q ss_pred ccccccccccc---CCCCceeecccCCcccc
Q 025663 59 DVGCEQCGSGE---RAEELLLCDKCDKGFHM 86 (249)
Q Consensus 59 ~~~C~vC~~~~---~~~~~l~CD~C~~~fH~ 86 (249)
-.+|.+|+..= .....+.|..|..+|=.
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLAFPI 38 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEEEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 35688888641 22455667777766643
No 140
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.91 E-value=34 Score=23.45 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=21.4
Q ss_pred cccccccccccCCCCceeecccCCcccccccC
Q 025663 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLR 90 (249)
Q Consensus 59 ~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~ 90 (249)
...|..|++.....++|. .-++.||..|..
T Consensus 15 ~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF~ 44 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC--VNGHFFHRSCFR 44 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC--BTTBCCBTTTCB
T ss_pred CCCCcccCCCcccceEEE--ECCCeeCCCcCE
Confidence 467999999875566654 346788987754
No 141
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=32.60 E-value=17 Score=25.05 Aligned_cols=28 Identities=11% Similarity=0.278 Sum_probs=16.6
Q ss_pred ccccccccccc---CCCCceeecccCCcccc
Q 025663 59 DVGCEQCGSGE---RAEELLLCDKCDKGFHM 86 (249)
Q Consensus 59 ~~~C~vC~~~~---~~~~~l~CD~C~~~fH~ 86 (249)
.-+|.+|+..= .....+.|..|..+|=.
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGLAYPI 38 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTEEEEE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 35688888641 22455667777666643
No 142
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=32.48 E-value=16 Score=20.89 Aligned_cols=28 Identities=32% Similarity=0.638 Sum_probs=18.4
Q ss_pred ccccccccccCCCCceeecccCCccccccc
Q 025663 60 VGCEQCGSGERAEELLLCDKCDKGFHMKCL 89 (249)
Q Consensus 60 ~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl 89 (249)
..|..|++.--+.+.+..+ ++.||-.|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~--g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCL--DKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSS--SSCCCGGGC
T ss_pred CcCCccCCEEecceeEEEC--CeEecccCC
Confidence 4688888875444555554 367888773
No 143
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=32.31 E-value=17 Score=25.03 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=17.4
Q ss_pred ccccccccccc---CCCCceeecccCCccccc
Q 025663 59 DVGCEQCGSGE---RAEELLLCDKCDKGFHMK 87 (249)
Q Consensus 59 ~~~C~vC~~~~---~~~~~l~CD~C~~~fH~~ 87 (249)
-.+|.+|+..= .....+.|..|..+|=..
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQAKLAYPIK 39 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEecCC
Confidence 35688888641 224556677777766443
No 144
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=31.72 E-value=6.6 Score=36.13 Aligned_cols=45 Identities=18% Similarity=0.367 Sum_probs=30.8
Q ss_pred cccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 59 ~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
...|.+|.... .-...-.|+-.||..|+...+.. ..-.||.|+..
T Consensus 332 ~~~C~ICle~~---~~pv~lpCGH~FC~~Ci~~wl~~---~~~~CP~CR~~ 376 (389)
T 2y1n_A 332 FQLCKICAEND---KDVKIEPCGHLMCTSCLTSWQES---EGQGCPFCRCE 376 (389)
T ss_dssp SSBCTTTSSSB---CCEEEETTCCEECHHHHHHHHHH---TCSBCTTTCCB
T ss_pred CCCCCccCcCC---CCeEEeCCCChhhHHHHHHHHhc---CCCCCCCCCCc
Confidence 46899998763 22334578888999998755431 23479999875
No 145
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.79 E-value=27 Score=24.63 Aligned_cols=32 Identities=31% Similarity=0.698 Sum_probs=26.2
Q ss_pred cccccccccccC--CCCceeecccCCcccccccC
Q 025663 59 DVGCEQCGSGER--AEELLLCDKCDKGFHMKCLR 90 (249)
Q Consensus 59 ~~~C~vC~~~~~--~~~~l~CD~C~~~fH~~Cl~ 90 (249)
-.+|..|+..-. ..+-+.|..|....|-.|+.
T Consensus 28 pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~ 61 (85)
T 2eli_A 28 PTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVI 61 (85)
T ss_dssp CCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTT
T ss_pred CcCCcccCccccccccCCCcCCCcCCccCHhHHh
Confidence 478999988543 24778999999999999987
No 146
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=30.55 E-value=29 Score=23.89 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=20.3
Q ss_pred CCceeec--ccCCcccccccCCcCCCCCCCCccCcc
Q 025663 72 EELLLCD--KCDKGFHMKCLRPIVVRVPIGTWLCPK 105 (249)
Q Consensus 72 ~~~l~CD--~C~~~fH~~Cl~P~l~~~p~g~W~Cp~ 105 (249)
...|.|| .|.+|-.+.=-.- ...+| ..|+|..
T Consensus 16 ~~WVQCd~p~C~KWR~LP~~~~-~~~lp-d~W~C~m 49 (69)
T 2e61_A 16 LVWVQCSFPNCGKWRRLCGNID-PSVLP-DNWSCDQ 49 (69)
T ss_dssp CCEEECSSTTTCCEEECCSSCC-TTTSC-TTCCGGG
T ss_pred CeEEEeCccccCcccCCccccc-cccCC-CcCEeCC
Confidence 5788999 9999876632111 12344 4899963
No 147
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=30.43 E-value=9.2 Score=28.72 Aligned_cols=51 Identities=20% Similarity=0.395 Sum_probs=32.6
Q ss_pred ccccccccccccCCCCce-eecccCC-cccccccCCcCCCCCCCCccCccccc
Q 025663 58 GDVGCEQCGSGERAEELL-LCDKCDK-GFHMKCLRPIVVRVPIGTWLCPKCSG 108 (249)
Q Consensus 58 ~~~~C~vC~~~~~~~~~l-~CD~C~~-~fH~~Cl~P~l~~~p~g~W~Cp~C~~ 108 (249)
-+..|.+|..--.+..++ +||.|.. .+.-.|+.=.....-...+||..|..
T Consensus 28 cdGkC~iCDs~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~~dAYYC~eC~~ 80 (109)
T 2k0a_A 28 CDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECCR 80 (109)
T ss_dssp GTTCCTTTCCCCCCCEECEEEHHHHTSSTTSBCTTTSSSBCCEECEECHHHHH
T ss_pred cCCcccccCCccCCcceEEECCcCCCCCcCCceEEcCCCCCcccceehHhhhh
Confidence 357788888766665444 8999987 45666765221111122699999984
No 148
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=29.92 E-value=20 Score=24.64 Aligned_cols=29 Identities=14% Similarity=0.364 Sum_probs=19.0
Q ss_pred ccccccccccc---CCCCceeecccCCccccc
Q 025663 59 DVGCEQCGSGE---RAEELLLCDKCDKGFHMK 87 (249)
Q Consensus 59 ~~~C~vC~~~~---~~~~~l~CD~C~~~fH~~ 87 (249)
.-+|.+|+..= ..+..+.|..|..+|=..
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~~c~~~YPI~ 41 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNERLNLAYRID 41 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred HhCCCCCCCcCeEeCCCCEEEcCCCCccccCC
Confidence 46788888742 234566788887777543
No 149
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=29.88 E-value=19 Score=27.94 Aligned_cols=53 Identities=28% Similarity=0.589 Sum_probs=35.8
Q ss_pred cccccccccccccC--CCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGER--AEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~--~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
+++..|.+|...-. .+.-..|-.|..-+-..|-.-.........|.|..|...
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 45788999999742 233458888887777777663212223347999999875
No 150
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=29.46 E-value=23 Score=28.17 Aligned_cols=50 Identities=18% Similarity=0.394 Sum_probs=35.5
Q ss_pred ccccccccccccc--CCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGE--RAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~--~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
+++..|.+|...- -.+.-..|-.|..-+-..|-. .....+.|.|..|...
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~---~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH---AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE---CCSSSSSCEEHHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhccccc---ccCCCCcEeeHHHHHH
Confidence 4678999999962 234556788888777777764 1234568999999875
No 151
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.65 E-value=30 Score=23.17 Aligned_cols=30 Identities=23% Similarity=0.456 Sum_probs=21.8
Q ss_pred cccccccccccCCCCceeecccCCcccccccC
Q 025663 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLR 90 (249)
Q Consensus 59 ~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~ 90 (249)
...|..|++....+++|. .-++.||..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF~ 38 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFCLK 38 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTTCB
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCCCC
Confidence 367999999876666664 346788988754
No 152
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=27.95 E-value=17 Score=23.95 Aligned_cols=31 Identities=26% Similarity=0.592 Sum_probs=26.1
Q ss_pred cccccccccccCCCCceeecccCCcccccccC
Q 025663 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLR 90 (249)
Q Consensus 59 ~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~ 90 (249)
-.+|..|+.-- ..+-+.|..|....|..|..
T Consensus 22 pt~C~~C~~~i-~kqg~kC~~C~~~cH~kC~~ 52 (59)
T 1rfh_A 22 PGWCDLCGREV-LRQALRCANCKFTCHSECRS 52 (59)
T ss_dssp CEECTTTCSEE-CSCCEECTTTSCEECHHHHT
T ss_pred CeEchhcchhh-hhCccEeCCCCCeEehhhhh
Confidence 36799998765 56778999999999999976
No 153
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=27.63 E-value=18 Score=20.02 Aligned_cols=10 Identities=30% Similarity=0.830 Sum_probs=7.5
Q ss_pred hccCCCCCCc
Q 025663 159 RRLLPFTPSE 168 (249)
Q Consensus 159 r~~lp~vps~ 168 (249)
++|||.||..
T Consensus 1 kRF~P~vpva 10 (27)
T 2hfr_A 1 KRFWPLVPVA 10 (27)
T ss_dssp CCSCSSSSSH
T ss_pred CCccccCcce
Confidence 4789988863
No 154
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=26.48 E-value=21 Score=22.40 Aligned_cols=14 Identities=50% Similarity=1.348 Sum_probs=10.3
Q ss_pred CCCCCccCc--ccccC
Q 025663 96 VPIGTWLCP--KCSGQ 109 (249)
Q Consensus 96 ~p~g~W~Cp--~C~~~ 109 (249)
...|+|.|+ .|-..
T Consensus 10 ~~~GDW~C~~~~C~~~ 25 (45)
T 1n0z_A 10 VSDGDWICPDKKCGNV 25 (45)
T ss_dssp SCSSSCBCSSTTTCCB
T ss_pred CCCCCcCCCCCCCCCE
Confidence 346899999 78654
No 155
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=26.44 E-value=23 Score=23.68 Aligned_cols=32 Identities=22% Similarity=0.464 Sum_probs=25.8
Q ss_pred cccccccccccCC--CCceeecccCCcccccccC
Q 025663 59 DVGCEQCGSGERA--EELLLCDKCDKGFHMKCLR 90 (249)
Q Consensus 59 ~~~C~vC~~~~~~--~~~l~CD~C~~~fH~~Cl~ 90 (249)
-.+|..|+..-.. .+-+.|..|....|..|+.
T Consensus 24 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~ 57 (66)
T 1y8f_A 24 PTYCYECEGLLWGIARQGMRCTECGVKCHEKCQD 57 (66)
T ss_dssp CCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHH
T ss_pred CcChhhcChhhcccCcceeEcCCCCCeeCHHHHh
Confidence 4789999886432 4668899999999999977
No 156
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.91 E-value=39 Score=22.55 Aligned_cols=45 Identities=18% Similarity=0.423 Sum_probs=25.0
Q ss_pred ccccccccccccccccCCCCceeecccCCc-ccccccCCcCCCCCCCCccCcccccC
Q 025663 54 RGDYGDVGCEQCGSGERAEELLLCDKCDKG-FHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 54 ~~~~~~~~C~vC~~~~~~~~~l~CD~C~~~-fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
..+.++..|.+|..... .++ ---|.-. |...|+. ..+.||.|+..
T Consensus 10 ~~~~~~~~C~IC~~~~~--~~v-~~pCgH~~~C~~C~~--------~~~~CP~CR~~ 55 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTV--NWV-LLPCRHTCLCDGCVK--------YFQQCPMCRQF 55 (68)
T ss_dssp CSCCCSSCCSSSSSSCC--CCE-ETTTTBCCSCTTHHH--------HCSSCTTTCCC
T ss_pred ccCCCCCCCCCcCcCCC--CEE-EECCCChhhhHHHHh--------cCCCCCCCCcc
Confidence 34455678999987632 222 1223322 4444544 13789999875
No 157
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=24.87 E-value=35 Score=19.39 Aligned_cols=12 Identities=33% Similarity=1.215 Sum_probs=9.7
Q ss_pred CCCccCcccccC
Q 025663 98 IGTWLCPKCSGQ 109 (249)
Q Consensus 98 ~g~W~Cp~C~~~ 109 (249)
-|+|.|-.|+..
T Consensus 16 mgdwccgrcirn 27 (32)
T 4b2v_A 16 MGDWCCGRCIRN 27 (32)
T ss_dssp TCCCCSSEEETT
T ss_pred hcchhhhHHHHh
Confidence 478999999854
No 158
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=24.42 E-value=27 Score=23.13 Aligned_cols=32 Identities=31% Similarity=0.672 Sum_probs=25.8
Q ss_pred cccccccccccC--CCCceeecccCCcccccccC
Q 025663 59 DVGCEQCGSGER--AEELLLCDKCDKGFHMKCLR 90 (249)
Q Consensus 59 ~~~C~vC~~~~~--~~~~l~CD~C~~~fH~~Cl~ 90 (249)
-.+|..|+.--. ..+-+.|..|....|..|..
T Consensus 20 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~ 53 (65)
T 3uej_A 20 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCRE 53 (65)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHT
T ss_pred CCcccccChhhhccCceeeECCCCCCeEchhHhh
Confidence 468999987532 24778999999999999977
No 159
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=24.41 E-value=29 Score=30.78 Aligned_cols=41 Identities=24% Similarity=0.563 Sum_probs=30.2
Q ss_pred ccccccccccccc----------CCC-CceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGE----------RAE-ELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~----------~~~-~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
....+|.+||..- ..| ..+.|..|...||+. .+.|+.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~------------R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV------------RIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC------------TTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec------------CcCCcCCCCC
Confidence 5578999999832 122 478999999988843 4679999875
No 160
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=23.29 E-value=6.3 Score=29.34 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=31.4
Q ss_pred cccccccccccccCCCCceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 57 YGDVGCEQCGSGERAEELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 57 ~~~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
.++..|.+|...-. .-+.. .|+-.|+..|+...+... ...||.|...
T Consensus 16 ~~~~~C~IC~~~~~--~p~~~-~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~ 62 (118)
T 3hct_A 16 ESKYECPICLMALR--EAVQT-PCGHRFCKACIIKSIRDA---GHKCPVDNEI 62 (118)
T ss_dssp CGGGBCTTTCSBCS--SEEEC-TTSCEEEHHHHHHHHHHH---CSBCTTTCCB
T ss_pred CCCCCCCcCChhhc--CeEEC-CcCChhhHHHHHHHHhhC---CCCCCCCCCC
Confidence 34578999997642 22333 699999999987544321 2379999865
No 161
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=23.07 E-value=41 Score=27.75 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=16.4
Q ss_pred CceeecccCCcccccccCCcCCCCCCCCccCcccccC
Q 025663 73 ELLLCDKCDKGFHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 73 ~~l~CD~C~~~fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
....|..|+..|-. . . .|.||.|-..
T Consensus 170 ~~~~C~~CG~i~~g---~-----~---p~~CP~C~~~ 195 (202)
T 1yuz_A 170 KFHLCPICGYIHKG---E-----D---FEKCPICFRP 195 (202)
T ss_dssp CEEECSSSCCEEES---S-----C---CSBCTTTCCB
T ss_pred cEEEECCCCCEEcC---c-----C---CCCCCCCCCC
Confidence 45567777655431 1 1 2999999865
No 162
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=22.96 E-value=20 Score=26.68 Aligned_cols=32 Identities=19% Similarity=0.446 Sum_probs=20.3
Q ss_pred CCceeecccCCccccccc-CCcCCCCCCCCccCcc
Q 025663 72 EELLLCDKCDKGFHMKCL-RPIVVRVPIGTWLCPK 105 (249)
Q Consensus 72 ~~~l~CD~C~~~fH~~Cl-~P~l~~~p~g~W~Cp~ 105 (249)
...|.||.|.+|-.+.=- ... ...| ..|+|..
T Consensus 26 ~~WVQCD~C~KWRrLP~~~~~~-~~~p-d~W~C~m 58 (100)
T 2l7p_A 26 SAWVRCDDCFKWRRIPASVVGS-IDES-SRWICMN 58 (100)
T ss_dssp SEEEECTTTCCEEEECHHHHTT-STTS-SCCCGGG
T ss_pred CeEEeeCCCCccccCChhHccc-cCCC-CCceeCC
Confidence 578899999998776411 110 1133 5899965
No 163
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.91 E-value=47 Score=23.07 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=21.5
Q ss_pred cccccccccccCCCCceeecccCCcccccccC
Q 025663 59 DVGCEQCGSGERAEELLLCDKCDKGFHMKCLR 90 (249)
Q Consensus 59 ~~~C~vC~~~~~~~~~l~CD~C~~~fH~~Cl~ 90 (249)
...|..|+......++| ..-++.||..|..
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF~ 44 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LANQQVFHISCFR 44 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--ECSSSEEETTTCB
T ss_pred CCcCccCCCccCCceeE--EECCCEECCCCCe
Confidence 46799999987655665 3556788887754
No 164
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=22.85 E-value=33 Score=23.08 Aligned_cols=40 Identities=18% Similarity=0.438 Sum_probs=26.5
Q ss_pred cccccccccccCCCCceeecccCCc-ccccccCCcCCCCCCCCccCcccccC
Q 025663 59 DVGCEQCGSGERAEELLLCDKCDKG-FHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 59 ~~~C~vC~~~~~~~~~l~CD~C~~~-fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
+..|.+|..... +.++ --|.-. |...|+... ..||.|+..
T Consensus 24 ~~~C~iC~~~~~--~~~~-~pCgH~~~C~~C~~~~--------~~CP~Cr~~ 64 (74)
T 4ic3_A 24 EKLCKICMDRNI--AIVF-VPCGHLVTCKQCAEAV--------DKCPMCYTV 64 (74)
T ss_dssp HTBCTTTSSSBC--CEEE-ETTCCBCCCHHHHTTC--------SBCTTTCCB
T ss_pred CCCCCCCCCCCC--CEEE-cCCCChhHHHHhhhcC--------ccCCCcCcC
Confidence 568999997632 2222 257666 778887632 689999864
No 165
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=20.71 E-value=55 Score=19.61 Aligned_cols=12 Identities=33% Similarity=1.146 Sum_probs=8.9
Q ss_pred CCCccCcccccC
Q 025663 98 IGTWLCPKCSGQ 109 (249)
Q Consensus 98 ~g~W~Cp~C~~~ 109 (249)
.|.|||..|...
T Consensus 19 S~gw~CqaC~nf 30 (38)
T 4cpa_I 19 SGAWFCQACWNS 30 (38)
T ss_dssp CCCSSCCEEETT
T ss_pred ccchHHHHHHhh
Confidence 457999999753
No 166
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.40 E-value=20 Score=24.61 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=25.6
Q ss_pred cccccccccccCC--CCceeecccCCcccccccC
Q 025663 59 DVGCEQCGSGERA--EELLLCDKCDKGFHMKCLR 90 (249)
Q Consensus 59 ~~~C~vC~~~~~~--~~~l~CD~C~~~fH~~Cl~ 90 (249)
-.+|..|+.--.. .+-+.|..|....|..|..
T Consensus 28 pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~ 61 (74)
T 2db6_A 28 PKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQS 61 (74)
T ss_dssp CEECSSSCCEECHHHHEEEEESSSCCEECTTTTG
T ss_pred CcCchhcChhhccccCCccccCCCCCccChhHHh
Confidence 4789999875321 3678999999999999987
No 167
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=20.39 E-value=9.3 Score=25.26 Aligned_cols=49 Identities=16% Similarity=0.344 Sum_probs=24.3
Q ss_pred ccccccccccccccCCCCceeecccCCc-ccccccCCcCCCCCCCCccCcccccC
Q 025663 56 DYGDVGCEQCGSGERAEELLLCDKCDKG-FHMKCLRPIVVRVPIGTWLCPKCSGQ 109 (249)
Q Consensus 56 ~~~~~~C~vC~~~~~~~~~l~CD~C~~~-fH~~Cl~P~l~~~p~g~W~Cp~C~~~ 109 (249)
...+..|.+|........++ ---|+-. |-..|..-. ....+.||-|+..
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~-~~pCgH~~~C~~C~~~~----~~~~~~CPiCR~~ 53 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDGNII-HGRTGHLVTCFHCARRL----KKAGASCPICKKE 53 (63)
T ss_dssp GGGGSBCTTTSSSBSCEEEE-ETTEEEEEECHHHHHHH----HHTTCBCTTTCCB
T ss_pred CCcCCCCcccCCcCCCeEEE-ecCCCCHhHHHHHHHHH----HHhCCcCCCcCch
Confidence 34467899999753222223 1122221 233443311 1123689999875
Done!