BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025666
(249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HX0|A Chain A, Three-Dimensional Structure Of The Hypothetical Protein
From Salmonella Cholerae-Suis (Aka Salmonella Enterica)
At The Resolution 1.55 A. Northeast Structural Genomics
Target Scr59
Length = 154
Score = 33.9 bits (76), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 135 GEDVMMKVISFSQQGP-RAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFM 193
G++V ++ +F QQ RA I G +++V LR T + G FE++SL+G+
Sbjct: 28 GQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEATT-SLTGTFEVISLNGTLE 86
Query: 194 LT 195
LT
Sbjct: 87 LT 88
>pdb|2NMU|A Chain A, Crystal Structure Of The Hypothetical Protein From
Salmonella Typhimurium Lt2. Northeast Structural
Genomics Consortium Target Str127
Length = 156
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 135 GEDVMMKVISFSQQGP-RAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFM 193
G++V ++ +F QQ RA I G +++V LR T + G FE++SL+G+
Sbjct: 28 GQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEATT-SLTGTFEVISLNGTLE 86
Query: 194 LT 195
LT
Sbjct: 87 LT 88
>pdb|2P6Y|A Chain A, X-Ray Structure Of The Protein Q9km02_vibch From Vibrio
Cholerae At The Resolution 1.63 A. Northeast Structural
Genomics Consortium Target Vcr80
Length = 142
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 130 ITINAGEDVMMKVISFSQQGP-RAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSL 188
+ + G D+ +++ QQ A I S G +S + +R DS TL FEILSL
Sbjct: 7 LRLTRGXDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSL 65
Query: 189 SGSFMLTESQGTRSRSGGMSVSLASPDGR 217
SG+ + +++A GR
Sbjct: 66 SGTLTYQHCH--------LHIAVADAQGR 86
>pdb|4H2F|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form I (Open)
In Complex With Adenosine
pdb|4H2G|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
In Complex With Adenosine
Length = 546
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 152 AICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGT 200
++CIL+ G+ S + R + GT+T+E +L G+F L + +G+
Sbjct: 382 SMCILNGGGIRSPIDER----NDGTITWENLAAVLPFGGTFDLVQLKGS 426
>pdb|4H1Y|P Chain P, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
In Complex With Psb11552
Length = 546
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 152 AICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGT 200
++CIL+ G+ S + R + GT+T+E +L G+F L + +G+
Sbjct: 382 SMCILNGGGIRSPIDER----NDGTITWENLAAVLPFGGTFDLVQLKGS 426
>pdb|4H1S|A Chain A, Crystal Structure Of A Truncated Soluble Form Of Human
Cd73 With Ecto- 5'-Nucleotidase Activity
pdb|4H1S|B Chain B, Crystal Structure Of A Truncated Soluble Form Of Human
Cd73 With Ecto- 5'-Nucleotidase Activity
Length = 530
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 152 AICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGT 200
++CIL+ G+ S + R + GT+T+E +L G+F L + +G+
Sbjct: 360 SMCILNGGGIRSPIDER----NNGTITWENLAAVLPFGGTFDLVQLKGS 404
>pdb|4H2I|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Iii
(Closed) In Complex With Ampcp
Length = 532
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 152 AICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGT 200
++CIL+ G+ S + R + GT+T+E +L G+F L + +G+
Sbjct: 360 SMCILNGGGIRSPIDER----NDGTITWENLAAVLPFGGTFDLVQLKGS 404
>pdb|4H2B|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
In Complex With Baicalin
Length = 547
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 152 AICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGT 200
++CIL+ G+ S + R + GT+T+E +L G+F L + +G+
Sbjct: 383 SMCILNGGGIRSPIDER----NDGTITWENLAAVLPFGGTFDLVQLKGS 427
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,225,988
Number of Sequences: 62578
Number of extensions: 217930
Number of successful extensions: 726
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 724
Number of HSP's gapped (non-prelim): 10
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)