BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025666
         (249 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
           GN=ESC PE=2 SV=1
          Length = 311

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 25/171 (14%)

Query: 90  GKRGRGRVSGHESKHYKKM--GMDNLGELHACSVGTNFTPHVITINAGEDVMMKVISFSQ 147
           GKR RGR  G ++K    +    D+   L +         HV+ ++ G D++  V ++++
Sbjct: 85  GKRPRGRPPGSKNKAKPPIIVTRDSPNALRS---------HVLEVSPGADIVESVSTYAR 135

Query: 148 QGPRAICILSANGVISNVTLRQP---------DSSGGTLTYEGRFEILSLSGSFMLTESQ 198
           +  R + +L  NG +SNVTLRQP            GG +T  GRFEILSL+G+ +   + 
Sbjct: 136 RRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAP 195

Query: 199 GTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIASFLFLIFGR 249
                   +S+ LA   G+VVGG+V   L+A+ P  VI   ASF   +F R
Sbjct: 196 PGAGG---LSIFLAGGQGQVVGGSVVAPLIASAP--VILMAASFSNAVFER 241


>sp|Q2JVA4|GLMU_SYNJA Bifunctional protein GlmU OS=Synechococcus sp. (strain JA-3-3Ab)
           GN=glmU PE=3 SV=1
          Length = 621

 Score = 40.0 bits (92), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 14/90 (15%)

Query: 135 GEDVMMKVISFSQQGP-RAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFM 193
           G+D+  ++  F++Q P +A  +LSA G +S  TLR  D +   L  E R EIL+LSGS  
Sbjct: 478 GQDLKQELERFARQQPLQAGFVLSAVGSLSQATLRLADQTEDYLLSE-RLEILALSGSLC 536

Query: 194 LTESQGTRSRSGGMSVSLASPD--GRVVGG 221
                       G+ + LA  D  GR  GG
Sbjct: 537 ----------PDGVHLHLAVADAQGRTWGG 556


>sp|Q2JII9|GLMU_SYNJB Bifunctional protein GlmU OS=Synechococcus sp. (strain
           JA-2-3B'a(2-13)) GN=glmU PE=3 SV=1
          Length = 632

 Score = 39.7 bits (91), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 135 GEDVMMKVISFSQQGP-RAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSF 192
           G+D+  ++   ++Q P +A  +LSA G +S  TLR  D +G  L  E R EIL+LSGS 
Sbjct: 480 GQDLKQELERLARQQPLQAGFVLSAVGSLSQATLRLADQTGDHLLSE-RLEILALSGSL 537


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.132    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,688,725
Number of Sequences: 539616
Number of extensions: 4301739
Number of successful extensions: 8921
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 8878
Number of HSP's gapped (non-prelim): 85
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)