Query 025666
Match_columns 249
No_of_seqs 224 out of 591
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:13:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03479 DUF296: Domain of unk 100.0 1.2E-29 2.7E-34 204.9 11.3 115 125-245 1-118 (120)
2 COG1661 Predicted DNA-binding 99.9 2.8E-24 6.1E-29 180.0 14.3 119 122-249 6-127 (141)
3 PF02178 AT_hook: AT hook moti 96.6 0.00078 1.7E-08 35.7 0.5 12 55-66 1-12 (13)
4 smart00384 AT_hook DNA binding 96.5 0.0013 2.9E-08 40.9 1.2 15 55-69 1-15 (26)
5 PF14621 RFX5_DNA_bdg: RFX5 DN 85.7 0.29 6.2E-06 43.6 0.5 22 52-73 65-87 (219)
6 COG1710 Uncharacterized protei 73.1 1.6 3.4E-05 36.7 0.9 20 48-67 77-97 (139)
7 PF13546 DDE_5: DDE superfamil 71.8 1.9 4.2E-05 38.5 1.2 15 53-67 229-243 (273)
8 PF03306 AAL_decarboxy: Alpha- 57.3 69 0.0015 29.0 8.3 103 131-237 85-198 (220)
9 COG1777 Predicted transcriptio 50.8 6.4 0.00014 35.8 0.6 14 53-66 62-75 (217)
10 TIGR01252 acetolac_decarb alph 41.5 1.4E+02 0.003 27.3 7.7 86 149-237 104-200 (232)
11 PF15333 TAF1D: TATA box-bindi 34.1 19 0.0004 32.8 0.9 12 57-68 64-75 (217)
12 PF14869 DUF4488: Domain of un 32.0 54 0.0012 27.9 3.3 35 152-188 28-62 (133)
13 KOG4565 E93 protein involved i 29.8 17 0.00037 32.4 -0.1 16 52-67 110-125 (206)
14 PF13737 DDE_Tnp_1_5: Transpos 28.8 26 0.00056 28.7 0.8 15 52-66 21-35 (112)
15 PF11906 DUF3426: Protein of u 26.5 1.3E+02 0.0029 24.4 4.7 42 181-224 65-106 (149)
16 COG3527 AlsD Alpha-acetolactat 22.2 1.4E+02 0.0031 27.6 4.4 100 134-237 92-202 (234)
17 cd04618 CBS_pair_5 The CBS dom 21.0 2.3E+02 0.0049 20.9 4.7 34 129-162 52-86 (98)
18 smart00412 Cu_FIST Copper-Fist 20.6 43 0.00093 22.9 0.5 8 54-61 31-38 (39)
No 1
>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown. Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.
Probab=99.96 E-value=1.2e-29 Score=204.86 Aligned_cols=115 Identities=32% Similarity=0.454 Sum_probs=101.4
Q ss_pred ceeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCC--CCCeeeeecceeEEEeeeeeeccCCCCCcC
Q 025666 125 FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDS--SGGTLTYEGRFEILSLSGSFMLTESQGTRS 202 (249)
Q Consensus 125 ~~phVIrv~~GEDIve~I~~faq~~~~aicILSaiGaVsnVtLr~~~~--~~~~~t~eG~fEILSLsGsis~~~~~~~~~ 202 (249)
||+|++||++||||+++|++||++..+..|++|++|+|++|+|++++. .....+++|+|||+||+|||...++ +
T Consensus 1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g----~ 76 (120)
T PF03479_consen 1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDG----K 76 (120)
T ss_dssp EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETT----E
T ss_pred CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCC----C
Confidence 689999999999999999999998888889999999999999999954 3368899999999999999998555 3
Q ss_pred CCCceEEEEeCCCCcEEeeeeC-ceeEEeecEEEEEeeeeeccc
Q 025666 203 RSGGMSVSLASPDGRVVGGAVA-GLLVAAGPVQVINFIASFLFL 245 (249)
Q Consensus 203 ~~~hLhVSLa~~dG~ViGGhL~-G~LIAAt~V~Vvv~~gsF~~~ 245 (249)
++.|+|++|++.||+++||||. |.+.++.+|+|++ .++++.
T Consensus 77 ~~~HlHisl~~~~g~v~gGHl~~g~v~~t~Ev~i~~--~~~~~~ 118 (120)
T PF03479_consen 77 PFVHLHISLADPDGQVFGGHLLEGTVFATAEVVITE--LSGINF 118 (120)
T ss_dssp EEEEEEEEEE-TTSEEEEEEEEEEEEEEEEEEEEEE--ETTEEE
T ss_pred CcceEEEEEECCCCeEEeeEeCCCEEeEEEEEEEEE--ecCccc
Confidence 8999999999999999999999 8888888888888 666554
No 2
>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]
Probab=99.92 E-value=2.8e-24 Score=180.01 Aligned_cols=119 Identities=21% Similarity=0.308 Sum_probs=103.4
Q ss_pred CCCceeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CeeeeecceeEEEeeeeeeccCCC
Q 025666 122 GTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQ 198 (249)
Q Consensus 122 g~~~~phVIrv~~GEDIve~I~~faq~~~~aicILSaiGaVsnVtLr~~~~~~---~~~t~eG~fEILSLsGsis~~~~~ 198 (249)
...-+.+++||++|||+.+.|.+||+++.+.+++++|+|++++++|++++.++ .+++++|+||||||.|||..++
T Consensus 6 ~~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~-- 83 (141)
T COG1661 6 SSSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD-- 83 (141)
T ss_pred cccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC--
Confidence 35568899999999999999999999999989999999999999999999664 5889999999999999999987
Q ss_pred CCcCCCCceEEEEeCCCCcEEeeeeCceeEEeecEEEEEeeeeeccccccC
Q 025666 199 GTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIASFLFLIFGR 249 (249)
Q Consensus 199 ~~~~~~~hLhVSLa~~dG~ViGGhL~G~LIAAt~V~Vvv~~gsF~~~~F~R 249 (249)
|+.|||++|++++|+++||||.+..+.. +++|++ .-.....|.|
T Consensus 84 ----p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I--~el~~~~~~R 127 (141)
T COG1661 84 ----PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFI--RELPGELFRR 127 (141)
T ss_pred ----CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEE--EEccccceeE
Confidence 7999999999999999999999777775 566666 4444444443
No 3
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=96.56 E-value=0.00078 Score=35.71 Aligned_cols=12 Identities=67% Similarity=1.085 Sum_probs=4.4
Q ss_pred ccccCCCCCCCC
Q 025666 55 KKKRGRPRKYGP 66 (249)
Q Consensus 55 kkkrGRPrky~~ 66 (249)
+|+||||+|+..
T Consensus 1 ~r~RGRP~k~~~ 12 (13)
T PF02178_consen 1 KRKRGRPRKNAK 12 (13)
T ss_dssp S--SS--TT---
T ss_pred CCcCCCCccccC
Confidence 589999999864
No 4
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=96.48 E-value=0.0013 Score=40.86 Aligned_cols=15 Identities=60% Similarity=0.811 Sum_probs=13.0
Q ss_pred ccccCCCCCCCCCCC
Q 025666 55 KKKRGRPRKYGPDGT 69 (249)
Q Consensus 55 kkkrGRPrky~~dg~ 69 (249)
|||||||||+..+..
T Consensus 1 kRkRGRPrK~~~~~~ 15 (26)
T smart00384 1 KRKRGRPRKAPKDXX 15 (26)
T ss_pred CCCCCCCCCCCCccc
Confidence 699999999988764
No 5
>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain
Probab=85.73 E-value=0.29 Score=43.61 Aligned_cols=22 Identities=45% Similarity=0.762 Sum_probs=14.6
Q ss_pred cccccccCCCCCC-CCCCCCccC
Q 025666 52 TQEKKKRGRPRKY-GPDGTMALS 73 (249)
Q Consensus 52 ~~~kkkrGRPrky-~~dg~~~l~ 73 (249)
..+|||||||||- +-.|.....
T Consensus 65 sdAKRKRGRPRKKsggsgErnst 87 (219)
T PF14621_consen 65 SDAKRKRGRPRKKSGGSGERNST 87 (219)
T ss_pred chhhhhcCCCccCCCCCccccCC
Confidence 3689999999964 444433333
No 6
>COG1710 Uncharacterized protein conserved in archaea [Function unknown]
Probab=73.11 E-value=1.6 Score=36.73 Aligned_cols=20 Identities=50% Similarity=0.825 Sum_probs=15.3
Q ss_pred cCCCcccc-cccCCCCCCCCC
Q 025666 48 GLTGTQEK-KKRGRPRKYGPD 67 (249)
Q Consensus 48 ~~~~~~~k-kkrGRPrky~~d 67 (249)
+...-++| |-|||||||...
T Consensus 77 gI~vIPvk~KgrGrprkyd~~ 97 (139)
T COG1710 77 GIKVIPVKLKGRGRPRKYDRN 97 (139)
T ss_pred CceEeeeeecCCCCCcccchh
Confidence 44445788 889999999764
No 7
>PF13546 DDE_5: DDE superfamily endonuclease
Probab=71.76 E-value=1.9 Score=38.53 Aligned_cols=15 Identities=60% Similarity=1.021 Sum_probs=11.3
Q ss_pred ccccccCCCCCCCCC
Q 025666 53 QEKKKRGRPRKYGPD 67 (249)
Q Consensus 53 ~~kkkrGRPrky~~d 67 (249)
...+|||||||||.-
T Consensus 229 ~~~~~rGRPr~~g~~ 243 (273)
T PF13546_consen 229 PPPPKRGRPRKYGRR 243 (273)
T ss_pred ccCCCCCCCCCCCCc
Confidence 344559999999964
No 8
>PF03306 AAL_decarboxy: Alpha-acetolactate decarboxylase; InterPro: IPR005128 Alpha-acetolactate decarboxylase plays a dual role in the cell: (i) it catalyzes the second step of the acetoin pathway, (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2 and thus potentially the internal pH of cells and (ii) it controls the pool of alpha-acetolactate during leucine and valine synthesis.; GO: 0047605 acetolactate decarboxylase activity, 0019751 polyol metabolic process, 0005789 endoplasmic reticulum membrane; PDB: 1XV2_B.
Probab=57.28 E-value=69 Score=28.95 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=56.6
Q ss_pred EEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCCC-------eeeeecceeEEEeeeeee----ccCCCC
Q 025666 131 TINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG-------TLTYEGRFEILSLSGSFM----LTESQG 199 (249)
Q Consensus 131 rv~~GEDIve~I~~faq~~~~aicILSaiGaVsnVtLr~~~~~~~-------~~t~eG~fEILSLsGsis----~~~~~~ 199 (249)
..-.-++|-+.|.+... .......+-..|..+.+++|-...... .+.-+-.||.=.+.|++. |.-.++
T Consensus 85 ~~~~~~~l~~~l~~~~~-~~N~f~airi~G~F~~v~~Rsv~~qe~Py~~l~e~~~~Q~~f~~~ni~GTlVGf~sP~~~~g 163 (220)
T PF03306_consen 85 SPMSKEELEAKLDELLP-SKNLFYAIRIDGTFSSVKTRSVPKQEKPYPPLAEVAKNQPEFTFENIEGTLVGFYSPEYMGG 163 (220)
T ss_dssp EEEEHHHHHHHHHHHSS--TTS-EEEEEEEEEEEEEEE------SS---THHHHTT--EEEEEEEEEEEEEEEE-GGGBT
T ss_pred CCCCHHHHHHHHHHhcC-CCceEEEEEEEEEECeEEEEeccCccCCCCChhHHhccCceEEecCcEEEEEEEEcchhccc
Confidence 33445667777766655 334577788899999999997654221 011123366666666654 433322
Q ss_pred CcCCCCceEEEEeCCCCcEEeeeeCceeEEeecEEEEE
Q 025666 200 TRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVIN 237 (249)
Q Consensus 200 ~~~~~~hLhVSLa~~dG~ViGGhL~G~LIAAt~V~Vvv 237 (249)
-. ..++|+.+-+.| +.+||||.+..+-...++|-.
T Consensus 164 i~--v~G~HlHFls~D-r~~GGHvld~~~~~~~v~~~~ 198 (220)
T PF03306_consen 164 IN--VPGFHLHFLSDD-RTFGGHVLDFELDNGTVEIDV 198 (220)
T ss_dssp TB---CEEEEEEEETT-SS-EEEEEEEEEEEEEEEEEE
T ss_pred cC--CceEEEEEecCC-CCCCCCeEEEEeceEEEEEEe
Confidence 22 234555555533 667999999888777776655
No 9
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=50.81 E-value=6.4 Score=35.81 Aligned_cols=14 Identities=64% Similarity=0.835 Sum_probs=11.2
Q ss_pred ccccccCCCCCCCC
Q 025666 53 QEKKKRGRPRKYGP 66 (249)
Q Consensus 53 ~~kkkrGRPrky~~ 66 (249)
-.|.+|||||||--
T Consensus 62 ie~~~Rg~~rKYY~ 75 (217)
T COG1777 62 IEKIPRGRPRKYYM 75 (217)
T ss_pred ccccccCCCcceee
Confidence 35778899999964
No 10
>TIGR01252 acetolac_decarb alpha-acetolactate decarboxylase. Puruvate can be fermented to 2,3-butanediol. It is first converted to alpha-acetolactate by alpha-acetolactate synthase, then decarboxylated to acetoin by this enzyme. Acetoin can be reduced in some species to 2,3-butanediol by acetoin reductase.
Probab=41.51 E-value=1.4e+02 Score=27.35 Aligned_cols=86 Identities=17% Similarity=0.348 Sum_probs=55.1
Q ss_pred CCccEEEEEeeceeeeEEEeCCCCCCC-------eeeeecceeEEEeeeeee----ccCCCCCcCCCCceEEEEeCCCCc
Q 025666 149 GPRAICILSANGVISNVTLRQPDSSGG-------TLTYEGRFEILSLSGSFM----LTESQGTRSRSGGMSVSLASPDGR 217 (249)
Q Consensus 149 ~~~aicILSaiGaVsnVtLr~~~~~~~-------~~t~eG~fEILSLsGsis----~~~~~~~~~~~~hLhVSLa~~dG~ 217 (249)
.....+-+-..|..++++.|--..... ...=+-.||+-.+.|++. +.--++- --.++|+.+-+.| +
T Consensus 104 ~~N~f~Airi~G~F~~v~~Rsvp~Q~kPy~~l~e~~~~Q~~f~~~nv~GTlvGF~sP~~~~gi--~v~G~HlHFisdD-r 180 (232)
T TIGR01252 104 GKNVFYAIRITGEFPKVQTRTVPKQEKPYPPFVEVVKGQPEFHFDNVTGTIVGFWTPAYAKGI--NVAGYHLHFISED-R 180 (232)
T ss_pred CCccEEEEEEEEEeceeEEEecCCCCCCCcCHHHHhcCCceEEEeccEEEEEEEecchhcccc--CCceEEEEEecCC-C
Confidence 455688889999999999997542211 111133478877777765 3322222 2455666666655 5
Q ss_pred EEeeeeCceeEEeecEEEEE
Q 025666 218 VVGGAVAGLLVAAGPVQVIN 237 (249)
Q Consensus 218 ViGGhL~G~LIAAt~V~Vvv 237 (249)
-+||||.+..+....++|-.
T Consensus 181 ~~GGHVld~~~~~~~~~i~~ 200 (232)
T TIGR01252 181 TFGGHVLDYIIDNGTLEIGQ 200 (232)
T ss_pred CCCcceeEEEeeeeEEEEee
Confidence 56999999888766666655
No 11
>PF15333 TAF1D: TATA box-binding protein-associated factor 1D
Probab=34.12 E-value=19 Score=32.80 Aligned_cols=12 Identities=50% Similarity=0.994 Sum_probs=9.5
Q ss_pred ccCCCCCCCCCC
Q 025666 57 KRGRPRKYGPDG 68 (249)
Q Consensus 57 krGRPrky~~dg 68 (249)
|+-+.|||-|.|
T Consensus 64 KkrkkrKYk~tg 75 (217)
T PF15333_consen 64 KKRKKRKYKPTG 75 (217)
T ss_pred HHhhhhccCccC
Confidence 566779999877
No 12
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=32.04 E-value=54 Score=27.86 Aligned_cols=35 Identities=37% Similarity=0.507 Sum_probs=28.6
Q ss_pred cEEEEEeeceeeeEEEeCCCCCCCeeeeecceeEEEe
Q 025666 152 AICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSL 188 (249)
Q Consensus 152 aicILSaiGaVsnVtLr~~~~~~~~~t~eG~fEILSL 188 (249)
..=|||.-|...|.++. +.. +..+++.|.||+.|=
T Consensus 28 ~lKilS~Dgtf~Ni~~~-~~~-~aiIt~~GtY~~~sD 62 (133)
T PF14869_consen 28 VLKILSDDGTFVNITMI-PKS-GAIITGYGTYEQPSD 62 (133)
T ss_pred cEEEEcCCCcEEEEEEe-CCC-CcEEEEeEEEEEcCC
Confidence 47799999999999993 322 379999999999873
No 13
>KOG4565 consensus E93 protein involved in programmed cell death, putative transcription regulator [Transcription]
Probab=29.85 E-value=17 Score=32.43 Aligned_cols=16 Identities=50% Similarity=0.843 Sum_probs=13.3
Q ss_pred cccccccCCCCCCCCC
Q 025666 52 TQEKKKRGRPRKYGPD 67 (249)
Q Consensus 52 ~~~kkkrGRPrky~~d 67 (249)
-.-+|||||=|+|...
T Consensus 110 KqpRkKRGrYRqYd~e 125 (206)
T KOG4565|consen 110 KQPRKKRGRYRQYDKE 125 (206)
T ss_pred cCccccccchhhhhHH
Confidence 3568999999999764
No 14
>PF13737 DDE_Tnp_1_5: Transposase DDE domain
Probab=28.84 E-value=26 Score=28.66 Aligned_cols=15 Identities=40% Similarity=0.835 Sum_probs=12.0
Q ss_pred cccccccCCCCCCCC
Q 025666 52 TQEKKKRGRPRKYGP 66 (249)
Q Consensus 52 ~~~kkkrGRPrky~~ 66 (249)
.+...|||||++|-.
T Consensus 21 ~~~~~kRGr~~~ySD 35 (112)
T PF13737_consen 21 APPRGKRGRPPRYSD 35 (112)
T ss_pred cCCCCCCCCCcccch
Confidence 456789999999953
No 15
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=26.50 E-value=1.3e+02 Score=24.37 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=33.6
Q ss_pred cceeEEEeeeeeeccCCCCCcCCCCceEEEEeCCCCcEEeeeeC
Q 025666 181 GRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVA 224 (249)
Q Consensus 181 G~fEILSLsGsis~~~~~~~~~~~~hLhVSLa~~dG~ViGGhL~ 224 (249)
+.-+++-++|++.+..+. ......|.++|.|.+|+++.-.+.
T Consensus 65 ~~~~~l~v~g~i~N~~~~--~~~~P~l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 65 DGPGVLVVSGTIRNRADF--PQALPALELSLLDAQGQPLARRVF 106 (149)
T ss_pred CCCCEEEEEEEEEeCCCC--cccCceEEEEEECCCCCEEEEEEE
Confidence 456778888988877654 357999999999999998876665
No 16
>COG3527 AlsD Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.20 E-value=1.4e+02 Score=27.58 Aligned_cols=100 Identities=17% Similarity=0.247 Sum_probs=59.7
Q ss_pred CCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCCC-------eeeeecceeEEEeee----eeeccCCCCCcC
Q 025666 134 AGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG-------TLTYEGRFEILSLSG----SFMLTESQGTRS 202 (249)
Q Consensus 134 ~GEDIve~I~~faq~~~~aicILSaiGaVsnVtLr~~~~~~~-------~~t~eG~fEILSLsG----sis~~~~~~~~~ 202 (249)
.-||+.+.|..+..-.+. .|-+...|.-..+..|....... ...-.=-||.=...| .+.+...++-.-
T Consensus 92 s~e~~~~~i~~~~~s~Nl-F~aiki~G~F~~v~~R~vp~q~~py~p~~e~~~~QPvf~~Env~GtiVGf~tP~~~~Gl~v 170 (234)
T COG3527 92 SSEDVFSGISGTMDSENL-FYAIKITGIFKYVHVRMVPKQTPPYTPLAEVVKIQPVFEFENVKGTIVGFWTPEYFEGLAV 170 (234)
T ss_pred cHHHHHHHhhcccCCCce-EEEEEEeccccceEEEEEeccCCCCccHhhhhccCCceEEeecCceEEEecChHHhccccc
Confidence 446888888887755443 45566777777777776543321 111111133334444 444443333222
Q ss_pred CCCceEEEEeCCCCcEEeeeeCceeEEeecEEEEE
Q 025666 203 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVIN 237 (249)
Q Consensus 203 ~~~hLhVSLa~~dG~ViGGhL~G~LIAAt~V~Vvv 237 (249)
.=-|+| +.+ |++.+||||..-.+-++.|+|-.
T Consensus 171 ~GyHlH--Fit-DdrtfGGHV~D~~~~~~~veI~~ 202 (234)
T COG3527 171 AGYHLH--FIT-DDRTFGGHVLDFEIENGEVEIGA 202 (234)
T ss_pred CceEEE--Eee-cCccccceEEEEEeeeEEEEEee
Confidence 334444 444 88999999999999999998866
No 17
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=21.04 E-value=2.3e+02 Score=20.93 Aligned_cols=34 Identities=6% Similarity=0.204 Sum_probs=30.3
Q ss_pred EEEEcCCCcHHHHHHHHHHhCCccEEEEEee-cee
Q 025666 129 VITINAGEDVMMKVISFSQQGPRAICILSAN-GVI 162 (249)
Q Consensus 129 VIrv~~GEDIve~I~~faq~~~~aicILSai-GaV 162 (249)
++.+.+.+++.+.+..+.+++...++|+... |-+
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~ 86 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTG 86 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCc
Confidence 7899999999999999999999999999876 644
No 18
>smart00412 Cu_FIST Copper-Fist. binds DNA only in present of copper or silver
Probab=20.56 E-value=43 Score=22.85 Aligned_cols=8 Identities=50% Similarity=0.978 Sum_probs=6.2
Q ss_pred cccccCCC
Q 025666 54 EKKKRGRP 61 (249)
Q Consensus 54 ~kkkrGRP 61 (249)
.=||||||
T Consensus 31 ~i~kkGRP 38 (39)
T smart00412 31 PVRPRGRP 38 (39)
T ss_pred eecCCCCC
Confidence 45788998
Done!