Query 025666
Match_columns 249
No_of_seqs 224 out of 591
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 15:00:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025666.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025666hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dt4_A Hypothetical protein PH 100.0 4.2E-28 1.4E-32 199.8 11.6 117 125-249 9-128 (143)
2 2p6y_A Hypothetical protein VC 99.9 6.9E-27 2.4E-31 193.0 15.7 114 124-249 1-116 (142)
3 2hx0_A Putative DNA-binding pr 99.9 8.2E-27 2.8E-31 195.0 16.2 118 120-249 13-132 (154)
4 2h6l_A Hypothetical protein; N 99.9 1.6E-27 5.6E-32 196.9 10.9 116 125-249 9-127 (146)
5 3htn_A Putative DNA binding pr 99.9 1.2E-26 4.2E-31 193.0 12.5 116 126-249 16-134 (149)
6 3hwu_A Putative DNA-binding pr 99.9 2.5E-24 8.7E-29 178.5 13.5 116 126-249 13-131 (147)
7 2ezd_A High mobility group pro 96.5 0.0011 3.7E-08 40.1 2.0 17 89-105 3-19 (26)
8 4dyq_A Gene 1 protein; GP1, oc 70.9 1.2 4.2E-05 35.4 0.9 14 54-67 3-16 (140)
9 2esy_A LUNG surfactant protein 53.0 6 0.0002 24.8 1.5 12 18-29 1-12 (32)
10 1xv2_A ALDC, hypothetical prot 49.9 75 0.0026 27.8 8.6 86 149-237 108-204 (237)
11 4i95_A Putative uncharacterize 35.6 27 0.00094 28.7 3.3 34 152-187 37-70 (142)
12 1t3g_A X-linked interleukin-1 35.0 23 0.00078 28.6 2.7 28 132-159 51-78 (159)
13 3fcg_A F1 capsule-anchoring pr 26.3 71 0.0024 24.0 4.0 46 163-218 27-73 (90)
14 1fyx_A TOLL-like receptor 2; b 24.9 32 0.0011 27.2 1.9 36 124-159 34-71 (149)
15 4gzv_A Hypothetical protein; A 23.9 60 0.0021 26.7 3.4 34 152-187 37-70 (142)
16 2j67_A TOLL like receptor 10; 23.6 35 0.0012 28.1 2.0 37 123-159 63-101 (178)
No 1
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.95 E-value=4.2e-28 Score=199.81 Aligned_cols=117 Identities=18% Similarity=0.246 Sum_probs=101.7
Q ss_pred ceeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CeeeeecceeEEEeeeeeeccCCCCCc
Q 025666 125 FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTR 201 (249)
Q Consensus 125 ~~phVIrv~~GEDIve~I~~faq~~~~aicILSaiGaVsnVtLr~~~~~~---~~~t~eG~fEILSLsGsis~~~~~~~~ 201 (249)
-++|++||++||||+++|++||+++.+..|+++++|++++|+|+|++.+. ..++++|+|||+||+|||++.++.
T Consensus 9 gr~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~--- 85 (143)
T 2dt4_A 9 GRTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGE--- 85 (143)
T ss_dssp EEEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTE---
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCC---
Confidence 37999999999999999999998766666666999999999999998764 368899999999999999997653
Q ss_pred CCCCceEEEEeCCCCcEEeeeeCceeEEeecEEEEEeeeeeccccccC
Q 025666 202 SRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIASFLFLIFGR 249 (249)
Q Consensus 202 ~~~~hLhVSLa~~dG~ViGGhL~G~LIAAt~V~Vvv~~gsF~~~~F~R 249 (249)
++.|+|++|+|.||+++||||...+++ +.+|++ ..|.+..|+|
T Consensus 86 -p~~HlHi~l~~~~G~v~GGHl~~g~v~--t~Ev~i--~~~~~~~~~R 128 (143)
T 2dt4_A 86 -PFVHAHVSLGNEEGIVFGGHLVEGEVF--VAEIFL--QELKGEKIER 128 (143)
T ss_dssp -EEEEEEEEEECTTSCEEEEEEEEEEEE--EEEEEE--EEEEESCCEE
T ss_pred -ceeeEEEEEECCCCCEeCCCCCCCceE--EEEEEE--EEcCCCeEEE
Confidence 899999999999999999999966555 555677 7888888876
No 2
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.95 E-value=6.9e-27 Score=192.95 Aligned_cols=114 Identities=27% Similarity=0.392 Sum_probs=101.0
Q ss_pred CceeEEEEEcCCCcHHHHHHHHHHh-CCccEEEEEeeceeeeEEEeCCCCCCCeeeeecceeEEEeeeeeeccCCCCCcC
Q 025666 124 NFTPHVITINAGEDVMMKVISFSQQ-GPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRS 202 (249)
Q Consensus 124 ~~~phVIrv~~GEDIve~I~~faq~-~~~aicILSaiGaVsnVtLr~~~~~~~~~t~eG~fEILSLsGsis~~~~~~~~~ 202 (249)
.|++|++||++||||+++|++||++ +.+++||++++|++++++|++++.+. +++++|+|||+||+|||++.
T Consensus 1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~------- 72 (142)
T 2p6y_A 1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ------- 72 (142)
T ss_dssp CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS-------
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC-------
Confidence 3789999999999999999999965 55689999999999999999999864 78899999999999999984
Q ss_pred CCCceEEEEeCCCCcEEeeeeCc-eeEEeecEEEEEeeeeeccccccC
Q 025666 203 RSGGMSVSLASPDGRVVGGAVAG-LLVAAGPVQVINFIASFLFLIFGR 249 (249)
Q Consensus 203 ~~~hLhVSLa~~dG~ViGGhL~G-~LIAAt~V~Vvv~~gsF~~~~F~R 249 (249)
..|||++|+|.||+++||||.+ ..| ..+++|++ ..|....|+|
T Consensus 73 -~~HlHisl~~~~G~v~GGHl~~g~~V-~~t~Ev~i--~~~~~~~~~R 116 (142)
T 2p6y_A 73 -HCHLHIAVADAQGRVWGGHLLEGNLI-NTTAELMI--HHYPQHHFTR 116 (142)
T ss_dssp -CEEEEEEEECTTSCEEEEEECTTCEE-CC-EEEEE--EECTTEEEEE
T ss_pred -CCEEEEEEECCCCCEEccccCCCCeE-EEEEEEEE--EEccCCeEEE
Confidence 2799999999999999999995 566 56788888 8888888876
No 3
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.95 E-value=8.2e-27 Score=194.98 Aligned_cols=118 Identities=24% Similarity=0.420 Sum_probs=104.5
Q ss_pred cCCCCceeEEEEEcCCCcHHHHHHHHHH-hCCccEEEEEeeceeeeEEEeCCCCCCCeeeeecceeEEEeeeeeeccCCC
Q 025666 120 SVGTNFTPHVITINAGEDVMMKVISFSQ-QGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQ 198 (249)
Q Consensus 120 ~~g~~~~phVIrv~~GEDIve~I~~faq-~~~~aicILSaiGaVsnVtLr~~~~~~~~~t~eG~fEILSLsGsis~~~~~ 198 (249)
+....+++|++||++||||+++|++||+ ++.+++||++++|++++++|+|++++. +++|+|+|||+||+|||++.
T Consensus 13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~--- 88 (154)
T 2hx0_A 13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT--- 88 (154)
T ss_dssp CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT---
T ss_pred CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC---
Confidence 4567899999999999999999999995 676789999999999999999999874 78899999999999999985
Q ss_pred CCcCCCCceEEEEeCCCCcEEeeeeCc-eeEEeecEEEEEeeeeeccccccC
Q 025666 199 GTRSRSGGMSVSLASPDGRVVGGAVAG-LLVAAGPVQVINFIASFLFLIFGR 249 (249)
Q Consensus 199 ~~~~~~~hLhVSLa~~dG~ViGGhL~G-~LIAAt~V~Vvv~~gsF~~~~F~R 249 (249)
..|||++|+|.||+++||||.+ ..|. .+++|++ ..|....|+|
T Consensus 89 -----~~HlHisl~~~~G~v~GGHL~~g~~V~-~t~Ev~i--~~~~~~~~~R 132 (154)
T 2hx0_A 89 -----GEHLHLAVSDPYGVMLGGHMMPGCTVR-TTLELVI--GELPALTFSR 132 (154)
T ss_dssp -----EEEEEEEEECTTSCEEEEEECTTCEEE-EEEEEEE--EECTTEEEEE
T ss_pred -----CCEEEEEEECCCCCEEccccCCCCcEE-EEEEEEE--EEccCceEEE
Confidence 2799999999999999999995 5555 6778888 7888777876
No 4
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.94 E-value=1.6e-27 Score=196.92 Aligned_cols=116 Identities=22% Similarity=0.222 Sum_probs=102.7
Q ss_pred ceeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CeeeeecceeEEEeeeeeeccCCCCCc
Q 025666 125 FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTR 201 (249)
Q Consensus 125 ~~phVIrv~~GEDIve~I~~faq~~~~aicILSaiGaVsnVtLr~~~~~~---~~~t~eG~fEILSLsGsis~~~~~~~~ 201 (249)
-++|++||++||||+++|++||++..+..|+++++|++++++|++++.+. ..++++|+|||+||+|||++.++.
T Consensus 9 gr~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg~--- 85 (146)
T 2h6l_A 9 GKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK--- 85 (146)
T ss_dssp CEEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE---
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCCC---
Confidence 46999999999999999999997655555555999999999999998875 378899999999999999997653
Q ss_pred CCCCceEEEEeCCCCcEEeeeeCceeEEeecEEEEEeeeeeccccccC
Q 025666 202 SRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIASFLFLIFGR 249 (249)
Q Consensus 202 ~~~~hLhVSLa~~dG~ViGGhL~G~LIAAt~V~Vvv~~gsF~~~~F~R 249 (249)
++.|||++|+ .||+++||||.+.+| .+++|++ .+|.+..|+|
T Consensus 86 -p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi--~~~~~~~~~R 127 (146)
T 2h6l_A 86 -PFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVFV--LPLSGEAPER 127 (146)
T ss_dssp -EEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEE--EECBSCCCBE
T ss_pred -ceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEEE--EEcCCCcEEE
Confidence 8999999999 999999999997776 5888888 8999988886
No 5
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.94 E-value=1.2e-26 Score=192.98 Aligned_cols=116 Identities=15% Similarity=0.238 Sum_probs=97.9
Q ss_pred eeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CeeeeecceeEEEeeeeeeccCCCCCcC
Q 025666 126 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTRS 202 (249)
Q Consensus 126 ~phVIrv~~GEDIve~I~~faq~~~~aicILSaiGaVsnVtLr~~~~~~---~~~t~eG~fEILSLsGsis~~~~~~~~~ 202 (249)
+.|++||++||||+++|++||+++.+..|+++++|++++|+|++++.+. ..++++|+|||+||+|||++.|+ +
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG----~ 91 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE----Q 91 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC----C
Confidence 7999999999999999999998877777777999999999999998764 36899999999999999999865 3
Q ss_pred CCCceEEEEeCCCCcEEeeeeCceeEEeecEEEEEeeeeeccccccC
Q 025666 203 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIASFLFLIFGR 249 (249)
Q Consensus 203 ~~~hLhVSLa~~dG~ViGGhL~G~LIAAt~V~Vvv~~gsF~~~~F~R 249 (249)
++.|||++|+|.||+++||||....|. .+.+|++ ..+.. .|.|
T Consensus 92 p~~HlH~sl~~~~G~v~gGHl~~g~V~-~t~Ei~i--~~~~~-~~~R 134 (149)
T 3htn_A 92 VYLHLHITVGRSDYSALAGHLLSAIQN-GAGEFVV--EDYSE-RISR 134 (149)
T ss_dssp EEEEEEEEEECTTSBEEEEEEEEEEEE-EEEEEEE--EECCS-CCEE
T ss_pred ceEEEEEEEECCCCCEEeEEeCCCEEE-EEEEEEE--EEcCC-eeEE
Confidence 899999999999999999999966554 3445555 34444 4544
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.91 E-value=2.5e-24 Score=178.51 Aligned_cols=116 Identities=18% Similarity=0.262 Sum_probs=99.8
Q ss_pred eeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CeeeeecceeEEEeeeeeeccCCCCCcC
Q 025666 126 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTRS 202 (249)
Q Consensus 126 ~phVIrv~~GEDIve~I~~faq~~~~aicILSaiGaVsnVtLr~~~~~~---~~~t~eG~fEILSLsGsis~~~~~~~~~ 202 (249)
+.+++||++||||+++|.+||++..+..++++++|++++++|++++.+. ...+++ ++||+||+|||++.|+ +
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG----~ 87 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEG----K 87 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETT----E
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCC----C
Confidence 5699999999999999999999888888888999999999999998764 246688 8999999999998775 4
Q ss_pred CCCceEEEEeCCCCcEEeeeeCceeEEeecEEEEEeeeeeccccccC
Q 025666 203 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVINFIASFLFLIFGR 249 (249)
Q Consensus 203 ~~~hLhVSLa~~dG~ViGGhL~G~LIAAt~V~Vvv~~gsF~~~~F~R 249 (249)
|+.|||++|+|.||+++||||....|.+.+++|++ ..+. ..|.|
T Consensus 88 p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i--~~~~-~~~~R 131 (147)
T 3hwu_A 88 PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITV--TVYP-QRLDR 131 (147)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEE--EEES-SCCBE
T ss_pred ceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEE--EEcC-CeEEE
Confidence 89999999999999999999997677755667777 4443 36665
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=96.54 E-value=0.0011 Score=40.08 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=14.7
Q ss_pred CCCCCCCcCCCCCCCcc
Q 025666 89 SGKRGRGRVSGHESKHY 105 (249)
Q Consensus 89 ~~kr~rGrP~gs~~k~k 105 (249)
..||+||||.|||||..
T Consensus 3 tpKrpRgRpkGSKNk~~ 19 (26)
T 2ezd_A 3 TPKRPRGRPKGSKNKGA 19 (26)
T ss_dssp SCCCCSSCCTTCCCCSC
T ss_pred CCcCCCCCcCcccccCc
Confidence 35999999999999863
No 8
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=70.91 E-value=1.2 Score=35.42 Aligned_cols=14 Identities=43% Similarity=0.878 Sum_probs=6.3
Q ss_pred cccccCCCCCCCCC
Q 025666 54 EKKKRGRPRKYGPD 67 (249)
Q Consensus 54 ~kkkrGRPrky~~d 67 (249)
.|+|+|||.||-+.
T Consensus 3 ~~~k~GRPtk~t~e 16 (140)
T 4dyq_A 3 TEPKAGRPSDYMPE 16 (140)
T ss_dssp -------CCSCCTT
T ss_pred CCCCCCCCCCCCHH
Confidence 47999999999876
No 9
>2esy_A LUNG surfactant protein C; lipid binding protein; NMR {Synthetic}
Probab=52.95 E-value=6 Score=24.78 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=10.4
Q ss_pred CCCCCccCcCCC
Q 025666 18 APSAYHVAPRTE 29 (249)
Q Consensus 18 ~~~~~~~~~~~~ 29 (249)
.|+||.++||.+
T Consensus 1 sPPdYSa~P~gr 12 (32)
T 2esy_A 1 SPPDYSAAPRGR 12 (32)
T ss_dssp CCCCCCSCCCSS
T ss_pred CCCccccCcCcc
Confidence 489999999986
No 10
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=49.91 E-value=75 Score=27.81 Aligned_cols=86 Identities=15% Similarity=0.206 Sum_probs=52.6
Q ss_pred CCccEEEEEeeceeeeEEEeCCCCCCC-------eeeeecceeEEEeeeee----eccCCCCCcCCCCceEEEEeCCCCc
Q 025666 149 GPRAICILSANGVISNVTLRQPDSSGG-------TLTYEGRFEILSLSGSF----MLTESQGTRSRSGGMSVSLASPDGR 217 (249)
Q Consensus 149 ~~~aicILSaiGaVsnVtLr~~~~~~~-------~~t~eG~fEILSLsGsi----s~~~~~~~~~~~~hLhVSLa~~dG~ 217 (249)
...-.|-+-.-|..++|+.|--..... ...-+-.|+.=...|++ ++.--++- -..++|+.+-+.|-
T Consensus 108 s~N~f~airi~G~F~~v~~R~vp~Q~~Py~~l~e~~~~Q~~f~~~~v~GTivGF~tP~~~~Gi--~v~G~HlHFisdDr- 184 (237)
T 1xv2_A 108 SENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGV--GSAGFHIHFADDER- 184 (237)
T ss_dssp CTTSCEEEEEEEEEEEEEEECCCCCCSSCCCTHHHHTTCCEEEEEEEEEEEEEEEECGGGBTT--BCSEEEEEEEETTS-
T ss_pred ccccEEEEEEEEEeCeEEEEecCCCCCCCCCHHHHhcCCceEEEeccEEEEEEEecchhhccc--CCceeEEEEEcCCC-
Confidence 455678889999999999997542211 01111225555655555 44432222 23445665665554
Q ss_pred EEeeeeCceeEEeecEEEEE
Q 025666 218 VVGGAVAGLLVAAGPVQVIN 237 (249)
Q Consensus 218 ViGGhL~G~LIAAt~V~Vvv 237 (249)
-+||||.+..+....+++-.
T Consensus 185 ~~GGHVldf~~~~~~~~~~~ 204 (237)
T 1xv2_A 185 AYGGHVLDFEVDDVVVEIQN 204 (237)
T ss_dssp SCEEEEEEEEEEEEEEEEEE
T ss_pred CCCcceEEEEecceEEEEee
Confidence 47999999888777776654
No 11
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=35.64 E-value=27 Score=28.72 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=29.2
Q ss_pred cEEEEEeeceeeeEEEeCCCCCCCeeeeecceeEEE
Q 025666 152 AICILSANGVISNVTLRQPDSSGGTLTYEGRFEILS 187 (249)
Q Consensus 152 aicILSaiGaVsnVtLr~~~~~~~~~t~eG~fEILS 187 (249)
..=|||.=|.+.|+++.. + .+.+++..|.|||.|
T Consensus 37 ~lKIlSdDgtF~Ni~m~~-~-~~aiIt~~GtY~~~S 70 (142)
T 4i95_A 37 TFKVLSDDGRIVNFTIRP-G-TDAIITGYGTYRQIS 70 (142)
T ss_dssp EEEEECTTSEEEEEECCT-T-SCCEEEEEEEEEEEE
T ss_pred cEEEEcCCCcEEEEEEec-C-CCcEEEEeEEEEecC
Confidence 567899999999999993 3 457999999999997
No 12
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=34.97 E-value=23 Score=28.55 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=25.3
Q ss_pred EcCCCcHHHHHHHHHHhCCccEEEEEee
Q 025666 132 INAGEDVMMKVISFSQQGPRAICILSAN 159 (249)
Q Consensus 132 v~~GEDIve~I~~faq~~~~aicILSai 159 (249)
+.+|++|.+.|.+..++..+.++|||-.
T Consensus 51 ~~~G~~i~~~i~~~I~~Sr~~IvVlS~~ 78 (159)
T 1t3g_A 51 LIPTGTYIEDVARCVDQSKRLIIVMTPN 78 (159)
T ss_dssp CCCCTTHHHHHHHHHHTBSEEEEEECHH
T ss_pred ccCccchHHHHHHHHHHcCEEEEEEccc
Confidence 6799999999999999999999999863
No 13
>3fcg_A F1 capsule-anchoring protein; beta barrel, beta strand swapping, cell membrane, cell outer membrane, cell projection, fimbrium, membrane; 2.85A {Yersinia pestis}
Probab=26.34 E-value=71 Score=24.03 Aligned_cols=46 Identities=24% Similarity=0.326 Sum_probs=27.1
Q ss_pred eeEEEeCCCCCC-CeeeeecceeEEEeeeeeeccCCCCCcCCCCceEEEEeCCCCcE
Q 025666 163 SNVTLRQPDSSG-GTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRV 218 (249)
Q Consensus 163 snVtLr~~~~~~-~~~t~eG~fEILSLsGsis~~~~~~~~~~~~hLhVSLa~~dG~V 218 (249)
+.|+|+|-+.-- .+..=-|+|||--|.-. . -.+-|.|.+-+.||+.
T Consensus 27 A~V~v~qnG~~iy~~~VppGpF~I~dl~~~----~------~~Gdl~V~v~eadG~~ 73 (90)
T 3fcg_A 27 ARVEVLRDGYTVSNELVPSGPFELANLPLG----G------GSGELKVIIHESDGTK 73 (90)
T ss_dssp EEEEEESSSCEEEEEEECSEEEEECCCC-------------CCEEEEEEEECTTSCE
T ss_pred cEEEEEECCEEEEEeEeCCCCeEEcCCccc----C------CceeEEEEEEECCCCE
Confidence 467788732110 12222489999766321 1 2345999999999986
No 14
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=24.91 E-value=32 Score=27.21 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=29.0
Q ss_pred CceeEEE--EEcCCCcHHHHHHHHHHhCCccEEEEEee
Q 025666 124 NFTPHVI--TINAGEDVMMKVISFSQQGPRAICILSAN 159 (249)
Q Consensus 124 ~~~phVI--rv~~GEDIve~I~~faq~~~~aicILSai 159 (249)
+++..+= .+.+|+++.+.|.+-.++..+.++|||-.
T Consensus 34 g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~ 71 (149)
T 1fyx_A 34 PFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSEN 71 (149)
T ss_dssp CCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHH
T ss_pred CeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcc
Confidence 4554432 37899999999999889999999999863
No 15
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=23.88 E-value=60 Score=26.68 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=28.0
Q ss_pred cEEEEEeeceeeeEEEeCCCCCCCeeeeecceeEEE
Q 025666 152 AICILSANGVISNVTLRQPDSSGGTLTYEGRFEILS 187 (249)
Q Consensus 152 aicILSaiGaVsnVtLr~~~~~~~~~t~eG~fEILS 187 (249)
..=|||.-|...|.++..- ++.+++..|.||+.|
T Consensus 37 ~~KIlS~DgtF~N~~m~~~--~~aiIt~yGtY~l~S 70 (142)
T 4gzv_A 37 TFKVLSDDGRIVNFTIIPG--ADAIITGYGTYKQLT 70 (142)
T ss_dssp EEEEECTTSEEEEEECCTT--SCCEEEEEEEEEEEE
T ss_pred ceEEECCCCcEEEEEEeCC--CCcEEEEeEEEEecC
Confidence 5678999999999998442 246899999999997
No 16
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=23.59 E-value=35 Score=28.06 Aligned_cols=37 Identities=19% Similarity=0.376 Sum_probs=29.0
Q ss_pred CCceeEEE--EEcCCCcHHHHHHHHHHhCCccEEEEEee
Q 025666 123 TNFTPHVI--TINAGEDVMMKVISFSQQGPRAICILSAN 159 (249)
Q Consensus 123 ~~~~phVI--rv~~GEDIve~I~~faq~~~~aicILSai 159 (249)
.+++..+- .+.+|++|.+.|.+..++..+.++|||-.
T Consensus 63 ~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~ 101 (178)
T 2j67_A 63 GSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPN 101 (178)
T ss_dssp -CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHH
T ss_pred CCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEeccc
Confidence 44555432 37899999999999889999999999864
Done!