Query 025667
Match_columns 249
No_of_seqs 177 out of 855
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 15:01:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025667hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 5.8E-36 2E-40 256.4 11.4 107 2-108 64-173 (174)
2 1ut7_A No apical meristem prot 100.0 6.4E-35 2.2E-39 249.0 10.0 104 2-108 66-170 (171)
3 2h7a_A Hypothetical protein YC 6.1 2.3E+02 0.0078 22.3 1.7 19 95-113 13-31 (110)
4 1wj5_A Hypothetical protein (r 5.6 1.8E+02 0.0061 23.3 0.8 26 169-194 56-81 (120)
5 2it2_A UPF0130 protein PH1069; 4.9 1.7E+02 0.0057 25.0 0.2 16 164-179 44-59 (200)
6 1wj6_A KIAA0049 protein, RSGI 4.4 1.9E+02 0.0065 22.5 0.2 39 177-215 9-60 (101)
7 2lpm_A Two-component response 4.0 2.2E+02 0.0074 21.6 0.2 7 243-249 101-107 (123)
8 4hwm_A Uncharacterized protein 3.8 4.6E+02 0.016 21.1 1.9 21 30-50 21-41 (130)
9 2dvk_A UPF0130 protein APE0816 3.6 1.7E+02 0.006 24.7 -0.7 16 164-179 30-45 (188)
10 2qg3_A UPF0130 protein AF_2059 3.3 1.9E+02 0.0067 24.8 -0.7 16 164-179 48-63 (208)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=5.8e-36 Score=256.43 Aligned_cols=107 Identities=76% Similarity=1.384 Sum_probs=84.1
Q ss_pred CccCCceEEEEeecCCCCCCCCCCcccccCceeeecCCccccc-CCceeeEEEEEEeeecCCCCCcccceEEEEeeeCCC
Q 025667 2 ARYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIG-KPKTLGIKKALVFYAGKAPKGIKTNWIMHEYRPANV 80 (249)
Q Consensus 2 al~gEkeWYFFSpr~rK~~nG~R~nRatg~GyWKatG~~K~I~-~gkvVG~KKtLvFY~Gk~p~g~KT~WvMhEYrL~~~ 80 (249)
+..|+++|||||+|++||++|.|++|+|++||||+||++++|. .+++||+||+|+||.|++|++.||+|+||||+|.+.
T Consensus 64 ~~~g~~ewYFFs~r~~ky~~g~R~nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~ 143 (174)
T 3ulx_A 64 ALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADA 143 (174)
T ss_dssp CSSCSSEEEEEEECCC-----CCSCEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSC
T ss_pred hccCCceEEEEeccccccCCCCCceeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCC
Confidence 4568899999999999999999999999999999999999996 478999999999999999999999999999999876
Q ss_pred CCCC--CCCCCCCCCceEEEEEEEeCCCCC
Q 025667 81 HRSP--ATKNNLRLDDWVLCRLYNKKGRME 108 (249)
Q Consensus 81 ~~s~--~k~n~~~~dd~VLCRIY~Kk~~~e 108 (249)
..+. .+.+...+++|||||||+|++.-+
T Consensus 144 ~~~~~~~~~~~~~~~~wVlCrvf~K~~~~~ 173 (174)
T 3ulx_A 144 GRAAAGAKKGSLRLDDWVLCRLYNKKNEWE 173 (174)
T ss_dssp C-----------CCSSEEEEEEEESCC---
T ss_pred CCcccccccCCCCCCCEEEEEEEEcCCCcC
Confidence 5432 122335678999999999987654
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=6.4e-35 Score=249.01 Aligned_cols=104 Identities=70% Similarity=1.274 Sum_probs=79.6
Q ss_pred CccCCceEEEEeecCCCCCCCCCCcccccCceeeecCCccccc-CCceeeEEEEEEeeecCCCCCcccceEEEEeeeCCC
Q 025667 2 ARYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIG-KPKTLGIKKALVFYAGKAPKGIKTNWIMHEYRPANV 80 (249)
Q Consensus 2 al~gEkeWYFFSpr~rK~~nG~R~nRatg~GyWKatG~~K~I~-~gkvVG~KKtLvFY~Gk~p~g~KT~WvMhEYrL~~~ 80 (249)
+..|+++|||||++++||++|.|++|+|++||||+||++++|. .+++||+||+|+||.|++|++.||+|+||||+|...
T Consensus 66 ~~~g~~ewyFFs~r~~k~~~g~R~~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~ 145 (171)
T 1ut7_A 66 ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEP 145 (171)
T ss_dssp SSSCSSEEEEEEECCC-------CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCC
T ss_pred hhcCCccEEEEeccccccCCCCcccccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCC
Confidence 4568999999999999999999999999999999999999996 568999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCceEEEEEEEeCCCCC
Q 025667 81 HRSPATKNNLRLDDWVLCRLYNKKGRME 108 (249)
Q Consensus 81 ~~s~~k~n~~~~dd~VLCRIY~Kk~~~e 108 (249)
.. ..+....++|||||||+|++..+
T Consensus 146 ~~---~~~~~~~~~~VlCrv~~k~~~~~ 170 (171)
T 1ut7_A 146 SR---RNGSTKLDDWVLCRIYKKQSSAQ 170 (171)
T ss_dssp C-----------CCEEEEEEEECC----
T ss_pred cc---ccCcccCCCEEEEEEEEcCCCCC
Confidence 42 12234578999999999987654
No 3
>2h7a_A Hypothetical protein YCGL; mixed alpha/beta/alpha sandwich structure, 3-layer (alpha/BE sandwich, beta-sheet layer antiparallel 3124 topology; NMR {Escherichia coli} SCOP: d.350.1.1
Probab=6.05 E-value=2.3e+02 Score=22.35 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=14.6
Q ss_pred eEEEEEEEeCCCCCcCCCC
Q 025667 95 WVLCRLYNKKGRMEKHYPS 113 (249)
Q Consensus 95 ~VLCRIY~Kk~~~ek~~~~ 113 (249)
..||-||+++++.+-+.-+
T Consensus 13 ~mlC~IYkS~KK~~~YLYV 31 (110)
T 2h7a_A 13 SMFCVIYRSSKRDQTYLYV 31 (110)
T ss_dssp CCCEEEEEETTSSSCEEEE
T ss_pred eEEEEEEecCCCCceEEEE
Confidence 3799999999887766444
No 4
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59
Probab=5.57 E-value=1.8e+02 Score=23.31 Aligned_cols=26 Identities=27% Similarity=0.142 Sum_probs=15.7
Q ss_pred ccCCCCcccccCCccccCcccccccc
Q 025667 169 QTDSSCSEHVLSPEIACDKEVQSVPK 194 (249)
Q Consensus 169 h~dss~~~~~~~~~~~~~~evqs~pk 194 (249)
+++|+|||+|=+-.-+-.+.|.|-=|
T Consensus 56 v~~s~~~~qv~~~~~stSk~i~sifK 81 (120)
T 1wj5_A 56 VTHSTGSDQVELKDSGTSGVAQRVFK 81 (120)
T ss_dssp CSCCSSCCCSSCCCCSSCHHHHHHHH
T ss_pred ccccccchhcccCCccHHHHHHHHHH
Confidence 35799999977653223355655433
No 5
>2it2_A UPF0130 protein PH1069; hypothetical protein, NPPSFA, national project on protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2drv_A 2it3_A
Probab=4.93 E-value=1.7e+02 Score=24.99 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=11.7
Q ss_pred CCcccccCCCCccccc
Q 025667 164 SVPRLQTDSSCSEHVL 179 (249)
Q Consensus 164 s~~~~h~dss~~~~~~ 179 (249)
+.|.+-|.||||--|.
T Consensus 44 s~~~~~TTSSCSGRIs 59 (200)
T 2it2_A 44 SIENYFTTSSCSGRIS 59 (200)
T ss_dssp HSTTEEECSCBCCEEE
T ss_pred CCCCcEEccCCCccEE
Confidence 4566778999997543
No 6
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=4.42 E-value=1.9e+02 Score=22.47 Aligned_cols=39 Identities=26% Similarity=0.624 Sum_probs=22.3
Q ss_pred cccCCcc----ccCccccc-------cccccccccccccc--cccccccccC
Q 025667 177 HVLSPEI----ACDKEVQS-------VPKWNDLGNALNDD--YNQFSFNYMD 215 (249)
Q Consensus 177 ~~~~~~~----~~~~evqs-------~pk~~~~~~~~~~~--~~~~~~~~~~ 215 (249)
|.+-|.+ ++..|+++ .+.|.|+..-+... |.-|.+-|+|
T Consensus 9 ~~m~~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~~~IkY~D 60 (101)
T 1wj6_A 9 HSMEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYLD 60 (101)
T ss_dssp CSSCSCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSSBCCEEEC
T ss_pred cccCccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCceEEEEec
Confidence 5555532 34455555 67899875443332 3336677888
No 7
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=3.95 E-value=2.2e+02 Score=21.62 Aligned_cols=7 Identities=57% Similarity=1.056 Sum_probs=5.8
Q ss_pred hhhcCCC
Q 025667 243 MILQKPF 249 (249)
Q Consensus 243 ~~~~k~~ 249 (249)
-||.|||
T Consensus 101 ~yl~KP~ 107 (123)
T 2lpm_A 101 PLLTKPF 107 (123)
T ss_dssp SCBCSSS
T ss_pred cEEECCC
Confidence 3899997
No 8
>4hwm_A Uncharacterized protein YEDD; YEDD-like protein, PF13987 family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 1.38A {Klebsiella pneumoniae subsp}
Probab=3.78 E-value=4.6e+02 Score=21.10 Aligned_cols=21 Identities=19% Similarity=0.700 Sum_probs=15.5
Q ss_pred cCceeeecCCcccccCCceee
Q 025667 30 GSGYWKATGADKPIGKPKTLG 50 (249)
Q Consensus 30 g~GyWKatG~~K~I~~gkvVG 50 (249)
-.|||...|--+...++..|+
T Consensus 21 L~G~WQs~GPQs~lvSpeAiA 41 (130)
T 4hwm_A 21 LAGFWQTKGPQSAMMSPDAIA 41 (130)
T ss_dssp TCEEEECCSCCTTSSSTTCEE
T ss_pred cceeeeccCCcccccChhhee
Confidence 479999999877766555554
No 9
>2dvk_A UPF0130 protein APE0816; hypothetical protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=3.62 E-value=1.7e+02 Score=24.68 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=11.7
Q ss_pred CCcccccCCCCccccc
Q 025667 164 SVPRLQTDSSCSEHVL 179 (249)
Q Consensus 164 s~~~~h~dss~~~~~~ 179 (249)
+.|.+-|.||||-.+.
T Consensus 30 s~~~~~TTSSCSGRIs 45 (188)
T 2dvk_A 30 RPSKIVSTSSCTGRIT 45 (188)
T ss_dssp CSTTEEEEEEECCEEE
T ss_pred CCCCcEEccCCCccEE
Confidence 5667778999997543
No 10
>2qg3_A UPF0130 protein AF_2059; TYW3 methyltransferase-like prrotein, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.95A {Archaeoglobus fulgidus dsm 4304}
Probab=3.30 E-value=1.9e+02 Score=24.83 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=11.8
Q ss_pred CCcccccCCCCccccc
Q 025667 164 SVPRLQTDSSCSEHVL 179 (249)
Q Consensus 164 s~~~~h~dss~~~~~~ 179 (249)
|.|.+-|.||||--|.
T Consensus 48 s~~~~~TTSSCSGRIs 63 (208)
T 2qg3_A 48 SFDDFVTLSSCSGRIA 63 (208)
T ss_dssp TSTTEEEEEEECCEEE
T ss_pred CCCCeEEcCCCcccEE
Confidence 5667778999997543
Done!