BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025668
(249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G10|A Chain A, Ligg From Sphingobium Sp. Syk-6 Is Related To The
Glutathione Transferase Omega Class
Length = 265
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 131 SPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190
P L ++ CPF RV + L + R ++ + GG P L+D
Sbjct: 3 EPQELTIYHIPGCPFSERVEIXLELKGLRXKDVEIDISKPRPDWLLAKTGGTTALP-LLD 61
Query: 191 PNTGVSMYESGDIVNYLFQQY 211
G S+ ES I+ YL Q+Y
Sbjct: 62 VENGESLKESXVILRYLEQRY 82
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 33.9 bits (76), Expect = 0.076, Method: Composition-based stats.
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG 180
++++ E CP+C R + ++ +S + P + + EM++R G
Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSG 48
>pdb|3VK9|A Chain A, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|B Chain B, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|C Chain C, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|D Chain D, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
Length = 216
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 170 IRHREMVR----RLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRS 216
+ H E ++ +L + P L+D G+S++ES I+ YL +Y KG S
Sbjct: 35 LHHGEQLKPEYLKLNPQHTVPTLVD--DGLSIWESRAIITYLVNKYAKGSS 83
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 18/73 (24%)
Query: 131 SPTRLQLFEFEACPFCRRVREAI-------TELDLSVEVFPCPKGSIRHREMVRRLGGKE 183
S + L+ CP+C+R R+ + T++D S + +EMV+R G+
Sbjct: 4 SMKEIILYTRPNCPYCKRARDLLDKKGVKYTDIDASTSL---------RQEMVQRANGRN 54
Query: 184 QFP--FLIDPNTG 194
FP F+ D + G
Sbjct: 55 TFPQIFIGDYHVG 67
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 10/46 (21%), Positives = 24/46 (52%)
Query: 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG 180
++++ E CP+ R + ++ +S + P + + EM++R G
Sbjct: 3 VEIYTKETCPYSHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSG 48
>pdb|3SJA|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJA|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJA|E Chain E, Crystal Structure Of S. Cerevisiae Get3 In The Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJA|F Chain F, Crystal Structure Of S. Cerevisiae Get3 In The Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJA|I Chain I, Crystal Structure Of S. Cerevisiae Get3 In The Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJB|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJB|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|A Chain A, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|B Chain B, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|E Chain E, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|F Chain F, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJD|A Chain A, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|B Chain B, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|C Chain C, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
Length = 362
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 17 TNPAHNFS-SLSHRSSRNGNWVSGRNRLHAKSADPDAGTSQVGD 59
T+PAHN S + + ++ V+G N L DP A + D
Sbjct: 56 TDPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMND 99
>pdb|3A36|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A36|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3B2E|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|C Chain C, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|D Chain D, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
Length = 362
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 17 TNPAHNFS-SLSHRSSRNGNWVSGRNRLHAKSADPDAGTSQVGD 59
T+PAHN S + + ++ V+G N L DP A + D
Sbjct: 56 TDPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMND 99
>pdb|3VLC|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Semi Open
Conformation In Complex With Get1 Cytosolic Domain At
4.5 Angstrom Resolution
Length = 354
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 17 TNPAHNFS-SLSHRSSRNGNWVSGRNRLHAKSADPDAGTSQVGD 59
T+PAHN S + + ++ V+G N L DP A + D
Sbjct: 56 TDPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMND 99
>pdb|2WOJ|A Chain A, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|B Chain B, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|C Chain C, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|D Chain D, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|3H84|A Chain A, Crystal Structure Of Get3
pdb|3H84|B Chain B, Crystal Structure Of Get3
pdb|3ZS8|A Chain A, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS8|B Chain B, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS9|A Chain A, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic
Get2 Fragment
pdb|3ZS9|B Chain B, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic
Get2 Fragment
Length = 354
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 17 TNPAHNFS-SLSHRSSRNGNWVSGRNRLHAKSADPDAGTSQVGD 59
T+PAHN S + + ++ V+G N L DP A + D
Sbjct: 56 TDPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMND 99
>pdb|3IDQ|A Chain A, Crystal Structure Of S. Cerevisiae Get3 At 3.7 Angstrom
Resolution
Length = 369
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 17 TNPAHNFS-SLSHRSSRNGNWVSGRNRLHAKSADPDAGTSQVGD 59
T+PAHN S + + ++ V+G N L DP A + D
Sbjct: 56 TDPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMND 99
>pdb|1F6F|A Chain A, Crystal Structure Of The Ternary Complex Between Ovine
Placental Lactogen And The Extracellular Domain Of The
Rat Prolactin Receptor
Length = 199
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 171 RHREMVRRLGGKEQFPF--LIDPNTGVSMYES---GDIVNYLFQQYGKG 214
+H R GK Q P L D T V+ Y S G++VN +QYG+G
Sbjct: 2 QHPPYCRNQPGKCQIPLQSLFDRATTVANYNSKLAGEMVNRFDEQYGQG 50
>pdb|1Z9H|A Chain A, Microsomal Prostaglandin E Synthase Type-2
pdb|1Z9H|B Chain B, Microsomal Prostaglandin E Synthase Type-2
pdb|1Z9H|C Chain C, Microsomal Prostaglandin E Synthase Type-2
pdb|1Z9H|D Chain D, Microsomal Prostaglandin E Synthase Type-2
pdb|2PBJ|A Chain A, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
pdb|2PBJ|B Chain B, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
pdb|2PBJ|C Chain C, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
pdb|2PBJ|D Chain D, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
Length = 290
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 131 SPTRLQLFEFEACPFCRRVREAITELDL---SVEVFPCPKGSIR 171
S +L L++++ CPFC +VR + L VEV P + I+
Sbjct: 11 SRLQLTLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVLRAEIK 54
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 124 QEISNSD-SPTRLQLFEFEACPFCRRVREAITELDLS 159
QE N P ++ +F CP+CRR +E +++L +
Sbjct: 3 QEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIK 39
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 126 ISNSDSPTRLQLFEFEACPFCRRVREAITEL 156
+++ P ++ +F CPFCR+ +E +++L
Sbjct: 5 VNSKIQPGKVVVFIKPTCPFCRKTQELLSQL 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,599,297
Number of Sequences: 62578
Number of extensions: 244314
Number of successful extensions: 464
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 17
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)