Query 025668
Match_columns 249
No_of_seqs 244 out of 1547
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 08:15:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025668.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025668hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03041 GST_N_2GST_N GST_N fam 99.8 5.4E-20 1.2E-24 136.2 8.7 77 134-211 1-77 (77)
2 PF13417 GST_N_3: Glutathione 99.7 1.1E-17 2.3E-22 123.2 8.6 74 137-214 1-74 (75)
3 cd03059 GST_N_SspA GST_N famil 99.7 6E-17 1.3E-21 116.7 9.2 73 135-211 1-73 (73)
4 cd03045 GST_N_Delta_Epsilon GS 99.7 6.4E-17 1.4E-21 117.0 9.0 72 135-209 1-74 (74)
5 cd03048 GST_N_Ure2p_like GST_N 99.7 2.4E-16 5.2E-21 116.7 9.8 78 134-213 1-81 (81)
6 cd03040 GST_N_mPGES2 GST_N fam 99.7 2.7E-16 5.9E-21 115.2 9.5 75 134-212 1-77 (77)
7 PRK11752 putative S-transferas 99.7 2.1E-16 4.5E-21 142.2 10.5 108 99-217 17-134 (264)
8 cd03052 GST_N_GDAP1 GST_N fami 99.7 2.2E-16 4.7E-21 116.6 8.7 71 135-208 1-73 (73)
9 cd03037 GST_N_GRX2 GST_N famil 99.7 2.3E-16 5E-21 114.1 8.5 71 135-209 1-71 (71)
10 cd03058 GST_N_Tau GST_N family 99.7 3.5E-16 7.7E-21 114.0 9.0 73 135-211 1-74 (74)
11 cd03051 GST_N_GTT2_like GST_N 99.7 4E-16 8.7E-21 111.7 8.6 72 135-208 1-74 (74)
12 cd03060 GST_N_Omega_like GST_N 99.7 4.8E-16 1E-20 112.8 8.7 69 136-207 2-70 (71)
13 cd03053 GST_N_Phi GST_N family 99.7 6.7E-16 1.4E-20 112.4 9.0 74 135-210 2-76 (76)
14 cd03056 GST_N_4 GST_N family, 99.6 7.7E-16 1.7E-20 110.4 8.8 71 135-208 1-73 (73)
15 PRK09481 sspA stringent starva 99.6 6.1E-16 1.3E-20 133.3 9.9 77 134-214 10-86 (211)
16 cd03050 GST_N_Theta GST_N fami 99.6 1.3E-15 2.9E-20 111.5 9.2 74 135-211 1-76 (76)
17 COG0625 Gst Glutathione S-tran 99.6 2.7E-15 5.9E-20 128.6 11.3 84 135-220 1-86 (211)
18 PRK15113 glutathione S-transfe 99.6 3.8E-15 8.3E-20 128.6 11.7 79 133-214 4-86 (214)
19 cd03061 GST_N_CLIC GST_N famil 99.6 1.9E-15 4.1E-20 117.9 8.7 71 141-215 20-90 (91)
20 cd03044 GST_N_EF1Bgamma GST_N 99.6 2.7E-15 5.9E-20 110.1 8.6 72 136-209 2-74 (75)
21 PRK10387 glutaredoxin 2; Provi 99.6 3.5E-15 7.5E-20 126.9 10.4 78 135-216 1-78 (210)
22 cd03047 GST_N_2 GST_N family, 99.6 3.5E-15 7.7E-20 108.6 8.8 71 135-208 1-73 (73)
23 cd03055 GST_N_Omega GST_N fami 99.6 5E-15 1.1E-19 112.7 9.6 74 132-208 16-89 (89)
24 cd03057 GST_N_Beta GST_N famil 99.6 5E-15 1.1E-19 108.4 8.9 75 135-212 1-77 (77)
25 cd03039 GST_N_Sigma_like GST_N 99.6 1.9E-15 4.2E-20 109.5 6.6 72 135-209 1-72 (72)
26 cd03076 GST_N_Pi GST_N family, 99.6 2.6E-15 5.6E-20 110.1 7.2 73 134-210 1-73 (73)
27 cd03080 GST_N_Metaxin_like GST 99.6 5.1E-15 1.1E-19 108.8 8.7 68 134-212 1-75 (75)
28 PF13409 GST_N_2: Glutathione 99.6 2.7E-15 5.8E-20 109.7 6.9 68 142-210 1-70 (70)
29 cd03049 GST_N_3 GST_N family, 99.6 5.6E-15 1.2E-19 107.2 8.1 71 135-208 1-73 (73)
30 cd03046 GST_N_GTT1_like GST_N 99.6 8.3E-15 1.8E-19 106.2 9.0 74 135-212 1-76 (76)
31 cd00570 GST_N_family Glutathio 99.6 1.1E-14 2.3E-19 100.4 8.8 71 135-208 1-71 (71)
32 PLN02473 glutathione S-transfe 99.6 1.4E-14 3.1E-19 124.0 9.9 77 134-213 2-80 (214)
33 cd03042 GST_N_Zeta GST_N famil 99.6 1.6E-14 3.5E-19 103.7 8.2 71 135-208 1-73 (73)
34 cd03038 GST_N_etherase_LigE GS 99.6 1.5E-14 3.2E-19 108.2 7.8 70 141-212 14-84 (84)
35 PRK13972 GSH-dependent disulfi 99.5 2.5E-14 5.3E-19 123.3 9.8 77 134-212 1-84 (215)
36 TIGR02182 GRXB Glutaredoxin, G 99.5 3.7E-14 8E-19 122.8 10.3 76 136-215 1-76 (209)
37 KOG0406 Glutathione S-transfer 99.5 2.2E-13 4.7E-18 122.3 11.5 78 133-214 8-86 (231)
38 cd03054 GST_N_Metaxin GST_N fa 99.5 1.7E-13 3.7E-18 99.5 8.1 65 135-210 1-72 (72)
39 PLN02378 glutathione S-transfe 99.5 1.2E-13 2.7E-18 119.7 8.4 71 140-214 17-87 (213)
40 cd03077 GST_N_Alpha GST_N fami 99.5 1E-13 2.2E-18 103.5 6.8 71 135-212 2-77 (79)
41 cd03075 GST_N_Mu GST_N family, 99.5 1.9E-13 4.1E-18 103.0 8.0 74 136-211 2-82 (82)
42 PRK10357 putative glutathione 99.5 2.3E-13 5.1E-18 115.5 9.4 77 135-214 1-77 (202)
43 KOG0868 Glutathione S-transfer 99.5 1.1E-13 2.3E-18 120.7 7.1 82 133-216 4-87 (217)
44 PLN02395 glutathione S-transfe 99.4 1.1E-12 2.3E-17 112.2 12.2 76 134-213 2-79 (215)
45 cd03043 GST_N_1 GST_N family, 99.4 3.7E-13 8.1E-18 98.9 7.8 67 140-208 7-73 (73)
46 TIGR01262 maiA maleylacetoacet 99.4 2.6E-13 5.7E-18 115.4 7.9 79 136-217 1-83 (210)
47 TIGR00862 O-ClC intracellular 99.4 5E-13 1.1E-17 119.9 9.0 71 140-214 16-86 (236)
48 PRK10542 glutathionine S-trans 99.4 5.5E-13 1.2E-17 112.7 8.1 78 135-215 1-81 (201)
49 PF02798 GST_N: Glutathione S- 99.4 2.5E-12 5.3E-17 95.3 9.0 71 135-209 3-76 (76)
50 TIGR02190 GlrX-dom Glutaredoxi 99.4 3E-12 6.6E-17 95.5 9.3 75 130-208 5-79 (79)
51 KOG0867 Glutathione S-transfer 99.4 3.5E-12 7.5E-17 112.9 11.3 76 134-212 2-79 (226)
52 PLN02817 glutathione dehydroge 99.4 1.8E-12 3.8E-17 117.8 8.3 70 141-214 71-140 (265)
53 cd03029 GRX_hybridPRX5 Glutare 99.3 6.8E-12 1.5E-16 91.3 9.1 71 134-208 2-72 (72)
54 PTZ00057 glutathione s-transfe 99.3 4.4E-12 9.6E-17 109.0 9.4 75 134-213 4-85 (205)
55 PRK10638 glutaredoxin 3; Provi 99.2 6.8E-11 1.5E-15 88.7 8.1 72 134-208 3-74 (83)
56 COG2999 GrxB Glutaredoxin 2 [P 99.2 7.3E-11 1.6E-15 103.0 7.3 76 135-214 1-76 (215)
57 cd02066 GRX_family Glutaredoxi 99.1 3.2E-10 7E-15 79.3 8.3 70 134-206 1-70 (72)
58 cd03079 GST_N_Metaxin2 GST_N f 99.1 2.2E-10 4.7E-15 86.4 7.1 64 135-210 11-74 (74)
59 TIGR02196 GlrX_YruB Glutaredox 99.1 3.9E-10 8.5E-15 79.5 7.5 71 134-207 1-73 (74)
60 cd03027 GRX_DEP Glutaredoxin ( 99.1 5E-10 1.1E-14 81.8 7.4 69 134-205 2-70 (73)
61 cd03418 GRX_GRXb_1_3_like Glut 99.1 6.9E-10 1.5E-14 80.4 8.0 72 134-208 1-73 (75)
62 COG0695 GrxC Glutaredoxin and 99.0 9.9E-10 2.1E-14 83.2 8.0 73 134-208 2-75 (80)
63 TIGR02183 GRXA Glutaredoxin, G 99.0 1.6E-09 3.4E-14 82.4 8.8 75 135-212 2-83 (86)
64 TIGR02200 GlrX_actino Glutared 99.0 1.8E-09 3.8E-14 77.8 8.6 74 134-209 1-77 (77)
65 PRK11200 grxA glutaredoxin 1; 99.0 2E-09 4.4E-14 80.9 8.5 76 134-212 2-84 (85)
66 KOG4420 Uncharacterized conser 99.0 5.6E-10 1.2E-14 102.3 5.4 85 129-216 21-107 (325)
67 PHA03050 glutaredoxin; Provisi 98.9 3.8E-09 8.3E-14 84.4 8.4 73 132-206 12-89 (108)
68 cd03419 GRX_GRXh_1_2_like Glut 98.9 5.7E-09 1.2E-13 76.5 8.0 74 134-209 1-76 (82)
69 cd02976 NrdH NrdH-redoxin (Nrd 98.9 3.4E-09 7.4E-14 74.6 6.5 63 134-199 1-63 (73)
70 TIGR02189 GlrX-like_plant Glut 98.9 7.7E-09 1.7E-13 81.0 9.1 75 131-207 6-82 (99)
71 PRK10329 glutaredoxin-like pro 98.9 6.6E-09 1.4E-13 78.7 8.0 73 134-208 2-74 (81)
72 TIGR02181 GRX_bact Glutaredoxi 98.9 5.2E-09 1.1E-13 77.1 7.2 72 135-209 1-72 (79)
73 TIGR00365 monothiol glutaredox 98.9 8.6E-09 1.9E-13 80.5 8.5 75 131-208 10-89 (97)
74 cd03028 GRX_PICOT_like Glutare 98.9 1.4E-08 3E-13 77.8 8.5 75 131-208 6-85 (90)
75 PF00462 Glutaredoxin: Glutare 98.8 5E-09 1.1E-13 73.8 4.9 59 135-196 1-59 (60)
76 KOG3029 Glutathione S-transfer 98.8 1.2E-08 2.6E-13 94.6 8.1 72 134-211 90-161 (370)
77 TIGR02180 GRX_euk Glutaredoxin 98.8 3.9E-08 8.4E-13 72.0 8.5 73 135-209 1-77 (84)
78 TIGR02194 GlrX_NrdH Glutaredox 98.8 2.4E-08 5.3E-13 72.9 7.3 54 135-190 1-54 (72)
79 cd03078 GST_N_Metaxin1_like GS 98.7 1.3E-07 2.8E-12 70.3 7.9 58 142-210 15-72 (73)
80 KOG1695 Glutathione S-transfer 98.5 2.7E-07 5.8E-12 81.9 8.0 79 134-217 3-83 (206)
81 PRK10824 glutaredoxin-4; Provi 98.5 4.7E-07 1E-11 73.6 8.1 75 131-208 13-92 (115)
82 KOG1422 Intracellular Cl- chan 98.4 3.5E-06 7.5E-11 75.2 10.6 74 141-218 19-92 (221)
83 KOG1752 Glutaredoxin and relat 98.2 7.8E-06 1.7E-10 65.5 9.1 76 130-207 11-88 (104)
84 PTZ00062 glutaredoxin; Provisi 98.2 4.7E-06 1E-10 73.8 8.5 75 130-207 110-189 (204)
85 PRK12759 bifunctional gluaredo 98.1 8E-06 1.7E-10 78.7 8.6 69 134-205 3-79 (410)
86 cd03031 GRX_GRX_like Glutaredo 98.1 1.5E-05 3.2E-10 67.3 8.1 70 134-206 1-80 (147)
87 PLN02907 glutamate-tRNA ligase 98.1 1.8E-05 3.9E-10 81.5 9.8 64 135-214 3-66 (722)
88 KOG4244 Failed axon connection 97.9 5.7E-05 1.2E-09 69.7 9.7 73 132-215 43-122 (281)
89 cd02973 TRX_GRX_like Thioredox 97.9 4.5E-05 9.9E-10 54.0 6.6 59 134-199 2-65 (67)
90 cd03036 ArsC_like Arsenate Red 97.8 2.9E-05 6.4E-10 61.8 4.6 35 135-169 1-35 (111)
91 cd02977 ArsC_family Arsenate R 97.6 9.2E-05 2E-09 57.8 5.2 35 135-169 1-35 (105)
92 PRK01655 spxA transcriptional 97.6 0.00011 2.3E-09 60.5 5.1 36 134-169 1-36 (131)
93 cd03032 ArsC_Spx Arsenate Redu 97.5 0.00016 3.5E-09 57.7 5.4 36 134-169 1-36 (115)
94 TIGR01617 arsC_related transcr 97.4 0.00028 6.1E-09 56.4 4.7 35 135-169 1-35 (117)
95 PRK12559 transcriptional regul 97.3 0.00049 1.1E-08 56.8 5.2 36 134-169 1-36 (131)
96 PRK13344 spxA transcriptional 97.2 0.00059 1.3E-08 56.4 5.3 36 134-169 1-36 (132)
97 COG4545 Glutaredoxin-related p 97.1 0.0012 2.5E-08 50.8 5.6 61 136-198 5-77 (85)
98 TIGR00412 redox_disulf_2 small 97.0 0.0051 1.1E-07 45.5 8.2 57 134-199 2-62 (76)
99 cd03035 ArsC_Yffb Arsenate Red 96.9 0.0015 3.3E-08 51.8 4.9 35 135-169 1-35 (105)
100 PF10568 Tom37: Outer mitochon 96.9 0.0068 1.5E-07 45.3 7.8 57 142-208 13-72 (72)
101 cd03033 ArsC_15kD Arsenate Red 96.8 0.0024 5.3E-08 51.4 5.0 35 135-169 2-36 (113)
102 TIGR00411 redox_disulf_1 small 96.7 0.013 2.7E-07 42.4 8.0 54 134-190 2-59 (82)
103 cd01659 TRX_superfamily Thiore 96.7 0.0053 1.2E-07 39.3 5.4 55 135-191 1-60 (69)
104 PF05768 DUF836: Glutaredoxin- 96.4 0.028 6.1E-07 42.1 8.2 51 134-190 1-55 (81)
105 cd03026 AhpF_NTD_C TRX-GRX-lik 96.2 0.016 3.6E-07 44.4 6.3 58 134-198 15-77 (89)
106 TIGR01616 nitro_assoc nitrogen 96.1 0.011 2.3E-07 48.7 5.2 36 134-169 2-37 (126)
107 COG0278 Glutaredoxin-related p 96.1 0.027 5.8E-07 45.4 7.1 74 131-207 13-92 (105)
108 PRK10853 putative reductase; P 96.1 0.01 2.2E-07 48.2 4.7 36 134-169 1-36 (118)
109 cd03030 GRX_SH3BGR Glutaredoxi 96.1 0.022 4.7E-07 44.5 6.4 69 135-206 2-80 (92)
110 COG1393 ArsC Arsenate reductas 96.0 0.015 3.3E-07 47.3 5.4 36 134-169 2-37 (117)
111 PRK10026 arsenate reductase; P 95.8 0.017 3.7E-07 48.6 5.1 35 134-168 3-37 (141)
112 cd03034 ArsC_ArsC Arsenate Red 95.8 0.021 4.5E-07 45.5 5.3 35 135-169 1-35 (112)
113 PHA02125 thioredoxin-like prot 95.7 0.043 9.2E-07 40.2 6.4 52 134-190 1-52 (75)
114 TIGR00014 arsC arsenate reduct 95.6 0.025 5.4E-07 45.3 5.2 36 135-170 1-36 (114)
115 PF13192 Thioredoxin_3: Thiore 95.6 0.1 2.2E-06 38.5 8.0 58 134-200 2-63 (76)
116 PF11287 DUF3088: Protein of u 95.1 0.11 2.3E-06 42.5 7.3 70 142-214 23-110 (112)
117 TIGR01295 PedC_BrcD bacterioci 94.2 0.26 5.6E-06 39.8 7.6 64 132-195 24-101 (122)
118 PF00085 Thioredoxin: Thioredo 94.0 0.68 1.5E-05 34.0 9.1 72 134-210 20-103 (103)
119 cd02975 PfPDO_like_N Pyrococcu 93.3 0.086 1.9E-06 41.7 3.2 53 133-190 23-81 (113)
120 cd02947 TRX_family TRX family; 93.3 0.48 1E-05 33.3 6.9 57 134-195 13-74 (93)
121 cd02949 TRX_NTR TRX domain, no 93.0 0.83 1.8E-05 34.4 8.2 58 134-196 16-79 (97)
122 TIGR02187 GlrX_arch Glutaredox 92.7 0.22 4.7E-06 43.5 5.2 70 134-208 136-213 (215)
123 PF03960 ArsC: ArsC family; I 92.6 0.2 4.2E-06 39.5 4.3 32 138-169 1-32 (110)
124 KOG0911 Glutaredoxin-related p 92.2 0.49 1.1E-05 43.0 6.9 75 131-208 137-216 (227)
125 TIGR03143 AhpF_homolog putativ 92.0 0.65 1.4E-05 46.3 8.2 59 134-199 479-542 (555)
126 TIGR01068 thioredoxin thioredo 91.0 1.8 3.8E-05 31.6 7.7 71 134-209 17-99 (101)
127 PRK15317 alkyl hydroperoxide r 90.8 0.2 4.4E-06 49.3 3.1 73 133-212 118-199 (517)
128 PF13098 Thioredoxin_2: Thiore 90.4 0.72 1.6E-05 35.1 5.4 25 131-155 5-29 (112)
129 TIGR03140 AhpF alkyl hydropero 89.9 0.22 4.9E-06 49.0 2.7 73 133-212 119-200 (515)
130 cd02951 SoxW SoxW family; SoxW 89.2 2.1 4.5E-05 33.6 7.3 21 133-153 16-36 (125)
131 PRK09381 trxA thioredoxin; Pro 89.0 3.7 8.1E-05 31.2 8.4 71 134-209 24-106 (109)
132 cd02953 DsbDgamma DsbD gamma f 88.9 0.81 1.8E-05 34.7 4.6 55 134-189 14-77 (104)
133 cd02950 TxlA TRX-like protein 88.6 5.5 0.00012 32.7 9.6 79 135-217 24-116 (142)
134 KOG2903 Predicted glutathione 87.9 2.7 5.8E-05 39.5 8.0 78 133-210 36-150 (319)
135 PF09635 MetRS-N: MetRS-N bind 87.7 0.36 7.7E-06 40.1 2.0 37 179-215 30-66 (122)
136 cd02996 PDI_a_ERp44 PDIa famil 87.6 2.7 5.8E-05 32.1 6.8 57 134-195 21-89 (108)
137 PTZ00443 Thioredoxin domain-co 87.5 3.1 6.7E-05 37.4 8.0 78 134-214 55-142 (224)
138 PF04908 SH3BGR: SH3-binding, 87.1 2.7 5.8E-05 33.4 6.6 70 134-206 2-86 (99)
139 PRK13728 conjugal transfer pro 86.7 14 0.00031 32.4 11.5 33 135-167 73-109 (181)
140 PTZ00051 thioredoxin; Provisio 86.6 0.99 2.2E-05 33.5 3.7 57 134-195 21-82 (98)
141 cd02984 TRX_PICOT TRX domain, 86.5 1.1 2.3E-05 33.2 3.8 60 134-196 17-80 (97)
142 cd02959 ERp19 Endoplasmic reti 85.7 2.7 5.9E-05 33.5 6.1 58 134-195 22-88 (117)
143 cd02963 TRX_DnaJ TRX domain, D 85.5 1.3 2.8E-05 34.6 4.1 71 134-209 27-110 (111)
144 cd02955 SSP411 TRX domain, SSP 85.4 3.3 7.2E-05 33.8 6.6 67 133-200 16-97 (124)
145 PRK10877 protein disulfide iso 85.3 1.3 2.8E-05 39.7 4.4 38 130-167 106-146 (232)
146 TIGR02187 GlrX_arch Glutaredox 85.2 3.4 7.3E-05 36.0 6.9 78 132-212 20-112 (215)
147 COG0435 ECM4 Predicted glutath 84.7 4.6 0.0001 38.2 7.9 80 133-212 50-158 (324)
148 TIGR01126 pdi_dom protein disu 84.3 1.9 4.1E-05 31.7 4.3 50 134-188 16-73 (102)
149 cd02993 PDI_a_APS_reductase PD 84.1 4.2 9E-05 31.4 6.3 54 133-189 23-83 (109)
150 cd02989 Phd_like_TxnDC9 Phosdu 84.1 1.2 2.5E-05 35.3 3.2 60 134-198 25-89 (113)
151 PHA02278 thioredoxin-like prot 83.6 6.6 0.00014 30.8 7.3 62 135-197 18-85 (103)
152 KOG3027 Mitochondrial outer me 83.6 2.4 5.3E-05 38.6 5.3 65 134-211 28-92 (257)
153 PRK10996 thioredoxin 2; Provis 83.5 10 0.00022 30.9 8.7 74 134-210 55-138 (139)
154 cd02997 PDI_a_PDIR PDIa family 83.1 7.4 0.00016 28.7 7.2 60 133-195 19-86 (104)
155 PRK11657 dsbG disulfide isomer 82.7 3.1 6.7E-05 37.7 5.8 36 131-166 117-156 (251)
156 cd02952 TRP14_like Human TRX-r 82.5 5.6 0.00012 32.4 6.7 60 141-201 38-107 (119)
157 cd03000 PDI_a_TMX3 PDIa family 81.5 2.1 4.5E-05 32.6 3.7 52 134-190 18-78 (104)
158 cd02994 PDI_a_TMX PDIa family, 80.7 3.7 7.9E-05 30.7 4.7 56 134-194 19-81 (101)
159 cd03020 DsbA_DsbC_DsbG DsbA fa 80.7 3.7 8.1E-05 35.1 5.3 37 131-167 77-115 (197)
160 cd02985 TRX_CDSP32 TRX family, 80.4 9.7 0.00021 29.1 7.1 62 134-197 18-84 (103)
161 cd02961 PDI_a_family Protein D 79.6 2.5 5.5E-05 30.3 3.4 53 133-188 17-75 (101)
162 PF13728 TraF: F plasmid trans 79.1 11 0.00024 33.5 7.9 60 134-194 123-195 (215)
163 cd02948 TRX_NDPK TRX domain, T 78.5 4.3 9.2E-05 31.0 4.5 57 134-196 20-83 (102)
164 PRK03147 thiol-disulfide oxido 78.3 15 0.00033 29.8 8.1 21 135-155 65-85 (173)
165 TIGR02740 TraF-like TraF-like 77.3 11 0.00024 34.6 7.6 59 135-194 170-241 (271)
166 cd03004 PDI_a_ERdj5_C PDIa fam 77.2 12 0.00025 28.1 6.6 51 134-189 22-78 (104)
167 cd02956 ybbN ybbN protein fami 76.8 6.2 0.00013 29.1 4.9 59 134-195 15-77 (96)
168 TIGR02738 TrbB type-F conjugat 76.5 16 0.00034 30.8 7.8 34 134-167 53-90 (153)
169 cd02954 DIM1 Dim1 family; Dim1 76.0 3.5 7.6E-05 33.5 3.6 56 135-195 18-79 (114)
170 cd03006 PDI_a_EFP1_N PDIa fami 75.5 14 0.0003 29.5 6.9 52 134-189 32-89 (113)
171 cd02972 DsbA_family DsbA famil 75.5 4.1 8.9E-05 29.0 3.5 34 135-168 1-40 (98)
172 KOG3028 Translocase of outer m 75.5 27 0.00058 33.4 9.7 58 142-209 16-73 (313)
173 cd03002 PDI_a_MPD1_like PDI fa 75.3 9.6 0.00021 28.6 5.7 53 134-189 21-79 (109)
174 cd02970 PRX_like2 Peroxiredoxi 75.0 11 0.00024 29.6 6.2 56 133-191 24-88 (149)
175 cd02957 Phd_like Phosducin (Ph 75.0 3.3 7.2E-05 32.2 3.1 58 134-197 27-89 (113)
176 KOG2824 Glutaredoxin-related p 73.9 11 0.00024 35.3 6.7 75 129-206 127-211 (281)
177 cd03003 PDI_a_ERdj5_N PDIa fam 73.9 12 0.00027 27.9 6.0 51 134-189 21-77 (101)
178 cd03023 DsbA_Com1_like DsbA fa 73.7 4.8 0.0001 31.6 3.8 36 132-167 6-46 (154)
179 cd03008 TryX_like_RdCVF Trypar 72.7 10 0.00022 31.9 5.7 23 133-155 26-49 (146)
180 PF08534 Redoxin: Redoxin; In 71.6 12 0.00026 29.7 5.7 56 133-191 29-93 (146)
181 PF06110 DUF953: Eukaryotic pr 70.5 12 0.00027 30.6 5.5 61 142-202 37-107 (119)
182 PRK15412 thiol:disulfide inter 69.6 19 0.00041 30.6 6.8 57 133-191 69-130 (185)
183 cd02999 PDI_a_ERp44_like PDIa 69.5 4 8.7E-05 31.4 2.4 52 134-189 21-77 (100)
184 PF04134 DUF393: Protein of un 69.0 25 0.00054 27.1 6.8 67 138-209 2-76 (114)
185 TIGR02661 MauD methylamine deh 69.0 25 0.00055 30.0 7.5 30 135-164 78-111 (189)
186 cd02995 PDI_a_PDI_a'_C PDIa fa 68.5 5.2 0.00011 29.5 2.7 23 134-156 21-43 (104)
187 COG3011 Predicted thiol-disulf 68.4 32 0.00069 29.1 7.7 77 132-211 8-87 (137)
188 cd03001 PDI_a_P5 PDIa family, 68.4 19 0.0004 26.5 5.8 51 134-189 21-77 (103)
189 KOG0907 Thioredoxin [Posttrans 68.0 25 0.00055 27.9 6.7 63 130-197 19-87 (106)
190 PHA03075 glutaredoxin-like pro 66.8 7.1 0.00015 32.4 3.4 34 133-166 3-36 (123)
191 PRK00293 dipZ thiol:disulfide 66.8 34 0.00073 34.8 8.9 73 135-209 478-568 (571)
192 smart00594 UAS UAS domain. 65.9 44 0.00096 26.4 7.8 61 134-195 30-99 (122)
193 TIGR01130 ER_PDI_fam protein d 65.8 29 0.00063 32.6 7.8 76 134-214 21-112 (462)
194 PF01323 DSBA: DSBA-like thior 65.7 11 0.00024 31.1 4.5 34 135-168 2-40 (193)
195 cd03010 TlpA_like_DsbE TlpA-li 65.7 28 0.0006 27.0 6.6 22 135-156 29-50 (127)
196 PLN02309 5'-adenylylsulfate re 65.5 39 0.00085 33.7 8.9 73 134-209 368-455 (457)
197 cd03005 PDI_a_ERp46 PDIa famil 64.9 6.3 0.00014 29.1 2.6 51 134-189 19-78 (102)
198 cd02998 PDI_a_ERp38 PDIa famil 64.8 5.7 0.00012 29.2 2.3 54 134-189 21-80 (105)
199 TIGR02739 TraF type-F conjugat 64.5 31 0.00066 31.9 7.5 61 133-194 152-225 (256)
200 KOG3425 Uncharacterized conser 64.4 13 0.00029 31.1 4.6 67 142-210 44-122 (128)
201 TIGR00385 dsbE periplasmic pro 63.8 20 0.00043 30.0 5.7 31 135-165 67-100 (173)
202 cd02966 TlpA_like_family TlpA- 62.9 16 0.00034 26.4 4.4 55 134-190 22-84 (116)
203 cd02967 mauD Methylamine utili 62.5 12 0.00026 28.3 3.8 71 133-218 22-98 (114)
204 PF00578 AhpC-TSA: AhpC/TSA fa 62.2 12 0.00026 28.5 3.8 56 133-191 26-90 (124)
205 cd03009 TryX_like_TryX_NRX Try 61.8 39 0.00085 26.3 6.8 23 133-155 19-42 (131)
206 cd02958 UAS UAS family; UAS is 61.5 36 0.00077 26.3 6.4 76 133-209 18-109 (114)
207 cd02971 PRX_family Peroxiredox 61.5 24 0.00051 27.5 5.5 58 132-191 22-88 (140)
208 cd03019 DsbA_DsbA DsbA family, 60.0 13 0.00028 30.3 3.9 35 132-166 16-56 (178)
209 cd02987 Phd_like_Phd Phosducin 59.2 12 0.00026 32.1 3.6 59 135-197 87-148 (175)
210 cd02965 HyaE HyaE family; HyaE 58.9 13 0.00027 30.2 3.5 64 131-199 27-98 (111)
211 PTZ00102 disulphide isomerase; 57.6 58 0.0013 31.1 8.4 76 133-213 51-140 (477)
212 PF13462 Thioredoxin_4: Thiore 57.4 12 0.00026 29.9 3.2 38 131-168 12-57 (162)
213 COG2143 Thioredoxin-related pr 56.9 61 0.0013 28.6 7.5 82 129-211 40-152 (182)
214 PRK13703 conjugal pilus assemb 56.8 50 0.0011 30.4 7.4 61 133-194 145-218 (248)
215 cd03022 DsbA_HCCA_Iso DsbA fam 54.8 17 0.00038 30.0 3.8 31 135-165 1-35 (192)
216 cd03065 PDI_b_Calsequestrin_N 54.6 66 0.0014 26.1 7.1 74 132-210 27-118 (120)
217 cd02962 TMX2 TMX2 family; comp 54.6 16 0.00035 30.8 3.6 59 135-198 51-122 (152)
218 TIGR00424 APS_reduc 5'-adenyly 54.1 58 0.0013 32.6 7.9 53 134-189 374-433 (463)
219 cd02964 TryX_like_family Trypa 53.2 20 0.00043 28.4 3.8 23 133-155 18-41 (132)
220 cd02992 PDI_a_QSOX PDIa family 50.6 36 0.00077 26.6 4.8 53 134-189 22-83 (114)
221 cd03021 DsbA_GSTK DsbA family, 50.2 25 0.00053 30.3 4.2 33 134-166 2-38 (209)
222 cd03017 PRX_BCP Peroxiredoxin 49.3 54 0.0012 25.5 5.7 55 133-191 24-88 (140)
223 cd03011 TlpA_like_ScsD_MtbDsbE 49.0 47 0.001 25.3 5.2 23 134-156 23-45 (123)
224 cd05295 MDH_like Malate dehydr 48.7 34 0.00074 34.1 5.4 76 142-217 3-91 (452)
225 cd03024 DsbA_FrnE DsbA family, 47.0 25 0.00054 29.4 3.6 32 135-166 1-40 (201)
226 PTZ00056 glutathione peroxidas 46.9 43 0.00092 29.1 5.2 68 137-209 45-127 (199)
227 PF13905 Thioredoxin_8: Thiore 46.7 24 0.00052 25.8 3.1 29 138-166 8-42 (95)
228 PTZ00062 glutaredoxin; Provisi 45.9 1.1E+02 0.0023 27.2 7.6 69 135-214 21-97 (204)
229 COG3019 Predicted metal-bindin 45.0 1.8E+02 0.004 25.0 8.4 70 133-212 26-105 (149)
230 KOG2501 Thioredoxin, nucleored 44.6 28 0.0006 30.1 3.5 36 133-168 34-77 (157)
231 PRK09437 bcp thioredoxin-depen 42.8 63 0.0014 25.9 5.3 56 133-191 31-95 (154)
232 PF14595 Thioredoxin_9: Thiore 40.5 12 0.00025 30.7 0.6 55 134-190 44-103 (129)
233 cd03025 DsbA_FrnE_like DsbA fa 39.3 51 0.0011 27.2 4.3 32 134-165 2-39 (193)
234 PTZ00102 disulphide isomerase; 37.9 50 0.0011 31.5 4.5 74 134-212 378-466 (477)
235 cd02982 PDI_b'_family Protein 37.7 39 0.00084 24.9 3.0 53 134-189 15-73 (103)
236 cd02988 Phd_like_VIAF Phosduci 37.6 83 0.0018 27.4 5.5 52 136-195 107-163 (192)
237 cd03018 PRX_AhpE_like Peroxire 37.5 78 0.0017 24.9 5.0 56 133-191 29-93 (149)
238 cd02969 PRX_like1 Peroxiredoxi 37.4 71 0.0015 26.2 4.9 22 135-156 29-50 (171)
239 COG0526 TrxA Thiol-disulfide i 35.6 33 0.00072 23.9 2.3 18 140-157 41-58 (127)
240 PLN02399 phospholipid hydroper 35.3 92 0.002 28.2 5.6 31 136-166 104-141 (236)
241 cd05564 PTS_IIB_chitobiose_lic 35.1 63 0.0014 24.9 3.9 65 143-207 13-94 (96)
242 KOG0910 Thioredoxin-like prote 35.1 50 0.0011 28.4 3.6 61 134-197 64-128 (150)
243 PF06053 DUF929: Domain of unk 34.5 33 0.00071 31.7 2.6 22 135-156 62-83 (249)
244 TIGR00216 ispH_lytB (E)-4-hydr 34.3 3.1E+02 0.0067 25.7 9.0 82 133-217 87-186 (280)
245 cd03013 PRX5_like Peroxiredoxi 33.8 1E+02 0.0022 25.5 5.2 57 133-191 30-98 (155)
246 cd02960 AGR Anterior Gradient 32.9 43 0.00092 27.9 2.8 38 130-167 22-66 (130)
247 COG1225 Bcp Peroxiredoxin [Pos 32.7 1.3E+02 0.0029 25.8 5.9 58 133-191 31-95 (157)
248 cd03016 PRX_1cys Peroxiredoxin 31.8 83 0.0018 27.2 4.6 34 133-166 26-68 (203)
249 TIGR03137 AhpC peroxiredoxin. 31.2 92 0.002 26.5 4.7 21 133-153 32-54 (187)
250 PTZ00256 glutathione peroxidas 30.9 1E+02 0.0023 26.0 5.0 72 136-212 46-133 (183)
251 cd02986 DLP Dim1 family, Dim1- 30.5 65 0.0014 26.3 3.4 49 138-189 21-73 (114)
252 PRK00522 tpx lipid hydroperoxi 30.1 1.3E+02 0.0027 25.1 5.3 58 133-191 45-108 (167)
253 COG2761 FrnE Predicted dithiol 29.9 65 0.0014 29.4 3.7 24 134-157 7-34 (225)
254 COG3118 Thioredoxin domain-con 29.5 1.9E+02 0.0042 27.6 6.8 75 134-213 46-132 (304)
255 cd03015 PRX_Typ2cys Peroxiredo 29.5 1.3E+02 0.0028 24.9 5.2 58 133-191 30-101 (173)
256 PF12781 AAA_9: ATP-binding dy 29.3 37 0.00081 30.4 2.0 49 182-238 32-80 (228)
257 TIGR01626 ytfJ_HI0045 conserve 27.9 1.3E+02 0.0028 26.4 5.0 53 138-191 66-133 (184)
258 PRK13599 putative peroxiredoxi 27.7 1.2E+02 0.0027 26.7 5.0 22 133-154 29-52 (215)
259 PRK10382 alkyl hydroperoxide r 27.6 1.5E+02 0.0032 25.7 5.3 18 133-150 32-51 (187)
260 PLN02412 probable glutathione 27.3 1.2E+02 0.0026 25.3 4.6 24 133-156 30-54 (167)
261 PF09413 DUF2007: Domain of un 27.2 59 0.0013 22.9 2.4 33 135-167 1-33 (67)
262 KOG0190 Protein disulfide isom 26.9 2.1E+02 0.0047 29.0 7.0 78 135-215 46-136 (493)
263 PF13899 Thioredoxin_7: Thiore 26.8 59 0.0013 23.6 2.4 20 134-153 20-39 (82)
264 cd00340 GSH_Peroxidase Glutath 26.4 1.1E+02 0.0024 24.8 4.2 23 133-156 23-46 (152)
265 PRK09266 hypothetical protein; 25.9 1.2E+02 0.0026 27.1 4.7 67 147-215 195-262 (266)
266 PLN00410 U5 snRNP protein, DIM 25.8 2.6E+02 0.0056 23.5 6.4 22 136-157 28-49 (142)
267 cd03014 PRX_Atyp2cys Peroxired 25.6 1.6E+02 0.0035 23.1 5.0 57 133-191 27-90 (143)
268 PRK13190 putative peroxiredoxi 25.3 1.7E+02 0.0036 25.3 5.3 22 133-154 28-51 (202)
269 PF09868 DUF2095: Uncharacteri 24.7 22 0.00047 29.7 -0.3 67 144-210 23-90 (128)
270 PF11823 DUF3343: Protein of u 24.6 1.4E+02 0.003 21.6 4.0 32 136-167 4-35 (73)
271 cd05565 PTS_IIB_lactose PTS_II 24.4 84 0.0018 24.8 3.0 22 145-166 16-37 (99)
272 TIGR02540 gpx7 putative glutat 23.7 1.6E+02 0.0034 23.8 4.6 22 135-156 26-47 (153)
273 PRK13191 putative peroxiredoxi 23.6 1.7E+02 0.0037 25.8 5.1 34 133-166 34-76 (215)
274 PF00731 AIRC: AIR carboxylase 23.2 1.4E+02 0.003 25.5 4.3 24 143-166 13-36 (150)
275 COG0320 LipA Lipoate synthase 22.9 1.7E+02 0.0037 27.9 5.1 43 147-189 103-155 (306)
276 cd04911 ACT_AKiii-YclM-BS_1 AC 22.0 1E+02 0.0022 23.4 2.9 23 144-166 16-38 (76)
277 cd03008 TryX_like_RdCVF Trypar 21.3 4.9E+02 0.011 21.7 8.2 70 133-206 64-137 (146)
278 PRK14018 trifunctional thiored 20.9 2E+02 0.0044 29.2 5.6 24 133-156 57-81 (521)
279 KOG0912 Thiol-disulfide isomer 20.8 2E+02 0.0043 28.0 5.2 71 136-212 18-107 (375)
280 PRK15000 peroxidase; Provision 20.8 2.4E+02 0.0052 24.5 5.4 23 132-154 34-58 (200)
281 PF06764 DUF1223: Protein of u 20.2 97 0.0021 27.6 2.8 23 135-157 2-24 (202)
No 1
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.82 E-value=5.4e-20 Score=136.22 Aligned_cols=77 Identities=58% Similarity=1.113 Sum_probs=67.8
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHh
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY 211 (249)
+++||+++.||||++|+++|.++||+|+.+++..++....++ +++||.++||+|+|.++|..++||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~-~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKF-LEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHH-HHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 489999999999999999999999999999997654344454 57999999999998656799999999999999986
No 2
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.74 E-value=1.1e-17 Score=123.16 Aligned_cols=74 Identities=28% Similarity=0.549 Sum_probs=66.3
Q ss_pred EEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHhCCC
Q 025668 137 LFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (249)
Q Consensus 137 LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY~~~ 214 (249)
||++..||||+|||++|.++||+|+.++++..+ + ++.+.+++|.++||+|++ +|..++||.+|++||+++|+.+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~-~-~~~~~~~~p~~~vPvL~~--~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEE-K-RPEFLKLNPKGKVPVLVD--DGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTS-T-SHHHHHHSTTSBSSEEEE--TTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCccc-c-hhHHHhhcccccceEEEE--CCEEEeCHHHHHHHHHHHcCCC
Confidence 899999999999999999999999999998653 3 444567999999999997 5999999999999999999865
No 3
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.71 E-value=6e-17 Score=116.65 Aligned_cols=73 Identities=25% Similarity=0.397 Sum_probs=64.3
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHh
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY 211 (249)
|+||+.+.||+|++++++|+++|++|+.++++.. ...++ ++++||.++||+|++ +|..++||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~-~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD-NPPED-LAELNPYGTVPTLVD--RDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC-CCCHH-HHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999999999998754 23344 457999999999998 5789999999999999886
No 4
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.70 E-value=6.4e-17 Score=117.03 Aligned_cols=72 Identities=26% Similarity=0.462 Sum_probs=62.6
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCC--CCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHH
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~k--g~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~e 209 (249)
|+||+++.||+|++|+++|+++|++|+.+.++. ++...+++ +++||.++||+|++ +|..|+||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~-~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEF-LKLNPQHTVPTLVD--NGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHH-HhhCcCCCCCEEEE--CCEEEEcHHHHHHHHhC
Confidence 689999999999999999999999999998863 33344554 47999999999998 58999999999999974
No 5
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.68 E-value=2.4e-16 Score=116.73 Aligned_cols=78 Identities=28% Similarity=0.522 Sum_probs=65.9
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCC--CCCCCHHHHHhhCCCCceeEEEeCC-CCeEeecHHHHHHHHHHH
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPN-TGVSMYESGDIVNYLFQQ 210 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~k--g~~~~re~l~~lnP~~qVPvLvDpn-tG~~L~ES~aIi~YL~ek 210 (249)
+++||+++. |+|++|+++|+++||+|+.+.++. +....+++ +++||.++||+|++++ +|..|+||.+|++||+++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~-~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~ 78 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEF-LKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEK 78 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHH-HHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHH
Confidence 489999985 999999999999999999988863 33344554 4799999999999842 289999999999999999
Q ss_pred hCC
Q 025668 211 YGK 213 (249)
Q Consensus 211 Y~~ 213 (249)
|+.
T Consensus 79 ~~~ 81 (81)
T cd03048 79 YDK 81 (81)
T ss_pred hCC
Confidence 973
No 6
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.68 E-value=2.7e-16 Score=115.19 Aligned_cols=75 Identities=23% Similarity=0.483 Sum_probs=63.5
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCC--CCeEeecHHHHHHHHHHHh
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPN--TGVSMYESGDIVNYLFQQY 211 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpn--tG~~L~ES~aIi~YL~ekY 211 (249)
+++||+++.||||++||.+|.++||+|+.++++.. . .+.+ +.+|.++||+|++.+ +|..|+||.+|++||+++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~--~-~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPV--S-RKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCch--h-HHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 48999999999999999999999999999988532 2 2234 479999999999742 4789999999999999875
Q ss_pred C
Q 025668 212 G 212 (249)
Q Consensus 212 ~ 212 (249)
|
T Consensus 77 ~ 77 (77)
T cd03040 77 G 77 (77)
T ss_pred C
Confidence 4
No 7
>PRK11752 putative S-transferase; Provisional
Probab=99.68 E-value=2.1e-16 Score=142.23 Aligned_cols=108 Identities=20% Similarity=0.335 Sum_probs=88.7
Q ss_pred hhhhhhhhccccccCcccccCCCCccccCCCCCCCceEEEEcCCChhhHHHHHHHHHc------CCceEEEEcCC--CCC
Q 025668 99 VATSSLSTLARLPWGSRSLSEGSDTQEISNSDSPTRLQLFEFEACPFCRRVREAITEL------DLSVEVFPCPK--GSI 170 (249)
Q Consensus 99 ~~~s~lAs~~R~~~G~~~~~~~~~~~~~~~~~pek~L~LYs~e~SPyCrkVR~~L~EL------gIpye~v~v~k--g~~ 170 (249)
..++++|.+.|+..|++.. +..+..+++|+||+.. ||+|++|+++|+|+ |++|+.+.++. +++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~ 87 (264)
T PRK11752 17 SNGGAFANINRPVAGATHE--------KTLPVGKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQ 87 (264)
T ss_pred CCCCcccccCCCCCCcchh--------cccCCCCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccc
Confidence 4578999999999999887 2445677899999975 99999999999997 89999987753 344
Q ss_pred CCHHHHHhhCCCCceeEEEeCC--CCeEeecHHHHHHHHHHHhCCCCCC
Q 025668 171 RHREMVRRLGGKEQFPFLIDPN--TGVSMYESGDIVNYLFQQYGKGRSP 217 (249)
Q Consensus 171 ~~re~l~~lnP~~qVPvLvDpn--tG~~L~ES~aIi~YL~ekY~~~~~P 217 (249)
..++++ ++||.++||+|+|.+ +|+.|+||.+|++||+++|+. ..|
T Consensus 88 ~~~e~~-~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl~YL~~~~~~-L~P 134 (264)
T PRK11752 88 FSSGFV-EINPNSKIPALLDRSGNPPIRVFESGAILLYLAEKFGA-FLP 134 (264)
T ss_pred cCHHHH-hhCCCCCCCEEEeCCCCCCeEEEcHHHHHHHHHHhcCC-cCC
Confidence 456665 799999999999842 147999999999999999973 445
No 8
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.67 E-value=2.2e-16 Score=116.60 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=62.0
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCC--CCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHH
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~k--g~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ 208 (249)
++||.++.||+|++||++|+|+|++|+.+.++. ++++.+++ .++||.++||+|+| +|..|+||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~-~~inP~g~vP~L~~--~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWF-MRLNPTGEVPVLIH--GDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHH-HHhCcCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 579999999999999999999999999988754 33444555 47999999999998 6899999999999995
No 9
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.67 E-value=2.3e-16 Score=114.10 Aligned_cols=71 Identities=30% Similarity=0.506 Sum_probs=61.0
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHH
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~e 209 (249)
|+||+++.||||++||++|.++|++|+.+.++... ....+ +.+|.++||+|+++ +|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~--~~~~~-~~~~~~~vP~L~~~-~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD--EATPI-RMIGAKQVPILEKD-DGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc--hHHHH-HhcCCCccCEEEeC-CCeEeehHHHHHHHHhC
Confidence 57999999999999999999999999999887542 22333 57999999999983 48999999999999975
No 10
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.67 E-value=3.5e-16 Score=113.98 Aligned_cols=73 Identities=25% Similarity=0.313 Sum_probs=63.3
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCC-CceeEEEeCCCCeEeecHHHHHHHHHHHh
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGK-EQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~-~qVPvLvDpntG~~L~ES~aIi~YL~ekY 211 (249)
|+||++..||+|++||++|.++|++|+.++++.. .+..++ +++||. ++||+|++ +|..++||.+|++||+++|
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~-~~~~p~~~~vP~l~~--~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG-NKSELL-LASNPVHKKIPVLLH--NGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHH-HHhCCCCCCCCEEEE--CCEEeehHHHHHHHHHhhC
Confidence 6899999999999999999999999999887653 333444 478995 99999998 5899999999999999875
No 11
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.66 E-value=4e-16 Score=111.68 Aligned_cols=72 Identities=26% Similarity=0.317 Sum_probs=61.5
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCC--CCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHH
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~k--g~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ 208 (249)
|+||+++.||+|+++|++|.++||+|+.+.++. ++....+ +.++||.++||+|+++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~-~~~~~p~~~vP~l~~~-~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPE-FLAKNPAGTVPVLELD-DGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHH-HHhhCCCCCCCEEEeC-CCCEEecHHHHHHHhC
Confidence 589999999999999999999999999988764 3233444 4579999999999864 5789999999999985
No 12
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.66 E-value=4.8e-16 Score=112.84 Aligned_cols=69 Identities=26% Similarity=0.411 Sum_probs=60.6
Q ss_pred EEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHH
Q 025668 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYL 207 (249)
Q Consensus 136 ~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL 207 (249)
+||++..||||++|+++|+++|++|+.++++... ..++ ++++||.++||+|+++ +|..|+||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~-~~~~-~~~~np~~~vP~L~~~-~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKN-KPAE-MLAASPKGTVPVLVLG-NGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCC-CCHH-HHHHCCCCCCCEEEEC-CCcEEecHHHHHHhh
Confidence 7999999999999999999999999999987642 2344 4579999999999984 589999999999996
No 13
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.65 E-value=6.7e-16 Score=112.42 Aligned_cols=74 Identities=23% Similarity=0.281 Sum_probs=63.2
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCC-CCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHH
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~-~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ek 210 (249)
|+||.++.||+|+++|++|+++|++|+.+.++... +...+.++++||.++||+|++ +|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~--~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALED--GDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHhhC
Confidence 79999999999999999999999999998876432 222334557999999999998 589999999999999864
No 14
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.65 E-value=7.7e-16 Score=110.39 Aligned_cols=71 Identities=27% Similarity=0.374 Sum_probs=61.7
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCC--CCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHH
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~k--g~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ 208 (249)
++||+++.||+|++||++|.++|++|+.++++. ++++..++ .++||.++||+|++ +|..|+||.+|++||.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~-~~~~p~~~vP~l~~--~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEF-LALNPNGEVPVLEL--DGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHH-HHhCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 589999999999999999999999999998863 33344454 47999999999998 5899999999999984
No 15
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.65 E-value=6.1e-16 Score=133.30 Aligned_cols=77 Identities=25% Similarity=0.385 Sum_probs=68.9
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHhCC
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGK 213 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY~~ 213 (249)
+|+||++..||+|++|+++|.|+||+|+.+.++.. ...++++ ++||.++||+|+| +|..|+||.||++||+++|+.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~-~~nP~g~VPvL~~--~g~~l~ES~AIl~YL~~~~~~ 85 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLI-DLNPYQSVPTLVD--RELTLYESRIIMEYLDERFPH 85 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHH-HhCCCCCCCEEEE--CCEEeeCHHHHHHHHHHhCCC
Confidence 69999999999999999999999999999999864 3344554 7999999999998 689999999999999999985
Q ss_pred C
Q 025668 214 G 214 (249)
Q Consensus 214 ~ 214 (249)
.
T Consensus 86 ~ 86 (211)
T PRK09481 86 P 86 (211)
T ss_pred C
Confidence 4
No 16
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.64 E-value=1.3e-15 Score=111.48 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=64.0
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCC--CCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHh
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKG--SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg--~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY 211 (249)
++||++..||+|++|+++|+++|++|+.+.++.. +...++ +.++||.++||+|++ +|..++||.+|++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~-~~~~~p~~~vP~L~~--~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPE-FKKINPFGKVPAIVD--GDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHH-HHHhCcCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 5799999999999999999999999999888643 223344 457999999999998 5799999999999999876
No 17
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.7e-15 Score=128.63 Aligned_cols=84 Identities=26% Similarity=0.449 Sum_probs=71.9
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCC-CCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHhCC
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGK 213 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~-~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY~~ 213 (249)
++||+...||||++|+++|.|+||+|+.+.++... ...++++ ++||.++||+|+++ +|..|+||.+|++||+++|+.
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~-~~nP~gkVPvL~~~-~~~~l~ES~AI~~YL~~~~~~ 78 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFL-ALNPLGKVPALVDD-DGEVLTESGAILEYLAERYPG 78 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHH-hcCCCCCCCEEeeC-CCCeeecHHHHHHHHHhhCCC
Confidence 58999999999999999999999999999987663 4445554 79999999999985 445999999999999999998
Q ss_pred C-CCCCcc
Q 025668 214 G-RSPSTG 220 (249)
Q Consensus 214 ~-~~P~~g 220 (249)
. ..|..+
T Consensus 79 ~~l~p~~~ 86 (211)
T COG0625 79 PPLLPADP 86 (211)
T ss_pred CCcCCCCc
Confidence 7 666444
No 18
>PRK15113 glutathione S-transferase; Provisional
Probab=99.62 E-value=3.8e-15 Score=128.60 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=68.7
Q ss_pred CceEEEEcC--CChhhHHHHHHHHHcCCceEEEEcCC--CCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHH
Q 025668 133 TRLQLFEFE--ACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (249)
Q Consensus 133 k~L~LYs~e--~SPyCrkVR~~L~ELgIpye~v~v~k--g~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ 208 (249)
++++||++. .||+|++|+++|.|+||+|+.+.++. ++...++++ ++||.++||+|+| +|..|+||.+|++||+
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~-~~nP~g~VP~L~~--~~~~l~ES~aI~~YL~ 80 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQ-GYSLTRRVPTLQH--DDFELSESSAIAEYLE 80 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHH-hcCCCCCCCEEEE--CCEEEecHHHHHHHHH
Confidence 468999975 69999999999999999999988864 444455655 7999999999998 6899999999999999
Q ss_pred HHhCCC
Q 025668 209 QQYGKG 214 (249)
Q Consensus 209 ekY~~~ 214 (249)
++|+..
T Consensus 81 ~~~~~~ 86 (214)
T PRK15113 81 ERFAPP 86 (214)
T ss_pred HHcCCC
Confidence 999854
No 19
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.62 E-value=1.9e-15 Score=117.93 Aligned_cols=71 Identities=21% Similarity=0.335 Sum_probs=62.2
Q ss_pred CCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHhCCCC
Q 025668 141 EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKGR 215 (249)
Q Consensus 141 e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY~~~~ 215 (249)
..||||++||++|.||||+|+.++++... .++++.++||.++||+|+| +|..++||.+|++||+++|...+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~--~p~~~~~~nP~g~vPvL~~--~~~~i~eS~~I~eYLde~~~~~~ 90 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKR--KPEDLKDLAPGTQPPFLLY--NGEVKTDNNKIEEFLEETLCPPK 90 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCC--CCHHHHHhCCCCCCCEEEE--CCEEecCHHHHHHHHHHHccCCC
Confidence 36999999999999999999999997643 3455668999999999998 58999999999999999997653
No 20
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.61 E-value=2.7e-15 Score=110.10 Aligned_cols=72 Identities=19% Similarity=0.290 Sum_probs=62.5
Q ss_pred EEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCC-CCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHH
Q 025668 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (249)
Q Consensus 136 ~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~-~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~e 209 (249)
+||+++.||+|++++++|+++|++|+.+.++... +..++ ++++||.++||+|+++ +|..++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~-~~~~nP~~~vP~L~~~-~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPE-FLKKFPLGKVPAFEGA-DGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHH-HHHhCCCCCCCEEEcC-CCCEEeeHHHHHHHHhh
Confidence 6999999999999999999999999999887542 33444 5579999999999974 58899999999999975
No 21
>PRK10387 glutaredoxin 2; Provisional
Probab=99.61 E-value=3.5e-15 Score=126.93 Aligned_cols=78 Identities=29% Similarity=0.497 Sum_probs=66.2
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHhCCC
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY~~~ 214 (249)
|+||+++.||||++||++|+++||+|+.++++.++... .. +.+|.++||+|+.+ +|..|+||.+|++||+++|+..
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~--~~-~~~p~~~VPvL~~~-~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEAT--PI-RMIGQKQVPILQKD-DGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh--HH-HhcCCcccceEEec-CCeEecCHHHHHHHHHHhCCCc
Confidence 68999999999999999999999999999987554322 23 58999999999532 6899999999999999999865
Q ss_pred CC
Q 025668 215 RS 216 (249)
Q Consensus 215 ~~ 216 (249)
..
T Consensus 77 ~l 78 (210)
T PRK10387 77 LL 78 (210)
T ss_pred cC
Confidence 43
No 22
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.61 E-value=3.5e-15 Score=108.61 Aligned_cols=71 Identities=23% Similarity=0.329 Sum_probs=61.4
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCC--CCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHH
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~k--g~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ 208 (249)
++||+++.||+|++|+++|+|+|++|+.++++. ++...+++ +++||.++||+|+| +|..|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~-~~~nP~~~vP~L~~--~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEF-LAMNPNGRVPVLED--GDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHH-HhhCCCCCCCEEEE--CCEEEECHHHHHHHhC
Confidence 589999999999999999999999999988763 33344554 47999999999998 5799999999999984
No 23
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.60 E-value=5e-15 Score=112.70 Aligned_cols=74 Identities=23% Similarity=0.367 Sum_probs=63.8
Q ss_pred CCceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHH
Q 025668 132 PTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (249)
Q Consensus 132 ek~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ 208 (249)
...++||++..||||++|+++|.++||+|+.++++... .++.+.+.||.++||+|+++ +|..|+||.+|++||+
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~--~~~~~~~~np~~~vPvL~~~-~g~~l~eS~aI~~yLe 89 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD--KPDWFLEKNPQGKVPALEID-EGKVVYESLIICEYLD 89 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC--CcHHHHhhCCCCCcCEEEEC-CCCEEECHHHHHHhhC
Confidence 35799999999999999999999999999999987542 23445579999999999973 4899999999999985
No 24
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.60 E-value=5e-15 Score=108.45 Aligned_cols=75 Identities=21% Similarity=0.249 Sum_probs=63.0
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCC--CCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHhC
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 212 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~k--g~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY~ 212 (249)
|+||+++.| +|++||++|.++||+|+.++++. ++...+++ +++||.++||+|+++ +|..|+||.+|++||+++|+
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~-~~~np~~~vP~l~~~-~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADY-LAINPKGQVPALVLD-DGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhH-HHhCCCCCCCEEEEC-CCcEEEcHHHHHHHHHHhCc
Confidence 589999876 59999999999999999987764 32344555 479999999999984 48999999999999999984
No 25
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.60 E-value=1.9e-15 Score=109.52 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=62.4
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHH
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~e 209 (249)
++||.++.|++|++||++|+++||+|+.+.++...+...+ +.++||.++||+|+| +|..|+||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~-~~~~~p~~~vP~L~~--~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELD-LKPTLPFGQLPVLEI--DGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhh-hccCCcCCCCCEEEE--CCEEEEecHHHHHHhhC
Confidence 5899999999999999999999999999988754333333 447999999999998 58999999999999974
No 26
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.60 E-value=2.6e-15 Score=110.08 Aligned_cols=73 Identities=15% Similarity=0.106 Sum_probs=63.0
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHH
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ek 210 (249)
+++||+++.|++|++||++|.++|++|+.+.++.+. ..++ ++++||.++||+|+| +|..|+||.+|++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~-~~~~-~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEE-WQES-LKPKMLFGQLPCFKD--GDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHH-hhhh-hhccCCCCCCCEEEE--CCEEEEcHHHHHHHHhcC
Confidence 589999999999999999999999999999887532 2233 457999999999998 689999999999999863
No 27
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.60 E-value=5.1e-15 Score=108.84 Aligned_cols=68 Identities=24% Similarity=0.400 Sum_probs=61.0
Q ss_pred ceEEEEcC-------CChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHH
Q 025668 134 RLQLFEFE-------ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (249)
Q Consensus 134 ~L~LYs~e-------~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~Y 206 (249)
+++||.++ .||||++|+++|.++|++|+.+.++. ++.+|.++||+|++ +|..++||.+|++|
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~---------~~~~p~g~vPvl~~--~g~~l~eS~~I~~y 69 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL---------AKRSPKGKLPFIEL--NGEKIADSELIIDH 69 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc---------ccCCCCCCCCEEEE--CCEEEcCHHHHHHH
Confidence 47899998 57999999999999999999988753 15799999999998 58999999999999
Q ss_pred HHHHhC
Q 025668 207 LFQQYG 212 (249)
Q Consensus 207 L~ekY~ 212 (249)
|+++|+
T Consensus 70 L~~~~~ 75 (75)
T cd03080 70 LEEKYG 75 (75)
T ss_pred HHHHcC
Confidence 999986
No 28
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.59 E-value=2.7e-15 Score=109.67 Aligned_cols=68 Identities=32% Similarity=0.459 Sum_probs=54.4
Q ss_pred CChhhHHHHHHHHHcCCceEEEEcCC--CCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHH
Q 025668 142 ACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (249)
Q Consensus 142 ~SPyCrkVR~~L~ELgIpye~v~v~k--g~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ek 210 (249)
+||||+||+++|.++||+|+...+.. ......+.+.++||.++||+|+|+ +|..++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~-~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDP-DGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEET-TTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEEC-CCCEeeCHHHHHHHHhcC
Confidence 59999999999999999999877622 222232344579999999999996 789999999999999974
No 29
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.59 E-value=5.6e-15 Score=107.18 Aligned_cols=71 Identities=24% Similarity=0.337 Sum_probs=61.1
Q ss_pred eEEEEcCCChhhHHHHHHHHH--cCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHH
Q 025668 135 LQLFEFEACPFCRRVREAITE--LDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~E--LgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ 208 (249)
++||++..||+|++||++|.+ +|++|+.++++.. .+.+++ ++++|.++||+|+++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~-~~~~p~~~vP~l~~~-~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESL-LAVNPLGKIPALVLD-DGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHH-HHhCCCCCCCEEEEC-CCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999988743 233454 479999999999864 6899999999999985
No 30
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.59 E-value=8.3e-15 Score=106.20 Aligned_cols=74 Identities=24% Similarity=0.390 Sum_probs=63.2
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCC--CCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHhC
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKG--SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 212 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg--~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY~ 212 (249)
|+||+++. ++|++|+++|+++|++|+.+.++.. ..+.+++ ++++|.++||+|++ +|..|+||.+|++||+++|+
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~~vP~l~~--~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEY-LAINPLGKVPVLVD--GDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHH-HhcCCCCCCCEEEE--CCEEEEcHHHHHHHHHHhCc
Confidence 57999875 6899999999999999999888643 3344554 47999999999998 68999999999999999985
No 31
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.58 E-value=1.1e-14 Score=100.44 Aligned_cols=71 Identities=32% Similarity=0.428 Sum_probs=61.9
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHH
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ 208 (249)
++||+++.||+|++++++|.++|++|+.++++....... .+++.+|.+++|+|++ +|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~P~l~~--~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE-EFLALNPLGKVPVLED--GGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCH-HHHhcCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 589999999999999999999999999999876543333 3557899999999998 5899999999999984
No 32
>PLN02473 glutathione S-transferase
Probab=99.56 E-value=1.4e-14 Score=124.01 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=68.2
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCC--CCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHh
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~k--g~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY 211 (249)
-|+||++..||+|++|+++|+|+||+|+.+.++. ++...++++ ++||.++||+|+| +|..|+||.+|++||+++|
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~-~~nP~g~vP~L~~--~g~~l~ES~aI~~YL~~~~ 78 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHL-LRQPFGQVPAIED--GDLKLFESRAIARYYATKY 78 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHH-hhCCCCCCCeEEE--CCEEEEehHHHHHHHHHHc
Confidence 4799999999999999999999999999987754 345566776 6899999999998 6899999999999999999
Q ss_pred CC
Q 025668 212 GK 213 (249)
Q Consensus 212 ~~ 213 (249)
+.
T Consensus 79 ~~ 80 (214)
T PLN02473 79 AD 80 (214)
T ss_pred CC
Confidence 75
No 33
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.56 E-value=1.6e-14 Score=103.72 Aligned_cols=71 Identities=25% Similarity=0.316 Sum_probs=61.1
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCC--CCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHH
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~k--g~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ 208 (249)
|+||++..||+|+++|++|.++|++|+.+.++. +.....+ +++++|.++||+|+| +|..++||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~-~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPA-YRALNPQGLVPTLVI--DGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChH-HHHhCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 589999999999999999999999999988764 3333444 457999999999998 5789999999999985
No 34
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.55 E-value=1.5e-14 Score=108.17 Aligned_cols=70 Identities=23% Similarity=0.285 Sum_probs=57.5
Q ss_pred CCChhhHHHHHHHHHcCCceEEEEcCCCCC-CCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHhC
Q 025668 141 EACPFCRRVREAITELDLSVEVFPCPKGSI-RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 212 (249)
Q Consensus 141 e~SPyCrkVR~~L~ELgIpye~v~v~kg~~-~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY~ 212 (249)
..||||++||++|.++||+|+.+.++.... ...+++ +++|.++||+|+|+ +|..|+||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~-~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDG-SGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEEC-CCCEEeCHHHHHHHHHHhCc
Confidence 479999999999999999999988764321 112334 68999999999983 37899999999999999985
No 35
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.55 E-value=2.5e-14 Score=123.26 Aligned_cols=77 Identities=23% Similarity=0.453 Sum_probs=64.8
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCC--CCCCCHHHHHhhCCCCceeEEEeC---CCC--eEeecHHHHHHH
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDP---NTG--VSMYESGDIVNY 206 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~k--g~~~~re~l~~lnP~~qVPvLvDp---ntG--~~L~ES~aIi~Y 206 (249)
+|+||..+ +|+|++|+++|+|+||+|+.++++. +++..++++ ++||.++||+|+|. ++| ..|+||.||++|
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~-~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~Y 78 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFL-RISPNNKIPAIVDHSPADGGEPLSLFESGAILLY 78 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHH-hhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHH
Confidence 47999886 7999999999999999999988764 334456665 79999999999973 245 579999999999
Q ss_pred HHHHhC
Q 025668 207 LFQQYG 212 (249)
Q Consensus 207 L~ekY~ 212 (249)
|+++|+
T Consensus 79 L~~~~~ 84 (215)
T PRK13972 79 LAEKTG 84 (215)
T ss_pred HHHhcC
Confidence 999986
No 36
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.54 E-value=3.7e-14 Score=122.84 Aligned_cols=76 Identities=30% Similarity=0.447 Sum_probs=64.9
Q ss_pred EEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHhCCCC
Q 025668 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKGR 215 (249)
Q Consensus 136 ~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY~~~~ 215 (249)
+||.+..||||++||++|.++||+|+.+++..++.. .. .++||.++||+|++. +|..|+||.+|++||+++|+...
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~--~~-~~~np~g~vP~l~~~-~g~~l~es~~I~~yL~~~~~~~~ 76 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE--TP-IRMIGAKQVPILQKD-DGRAMPESLDIVAYFDKLDGEPL 76 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch--hH-HHhcCCCCcceEEee-CCeEeccHHHHHHHHHHhCCCcc
Confidence 589999999999999999999999999988665432 22 468999999999832 68999999999999999997643
No 37
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.2e-13 Score=122.34 Aligned_cols=78 Identities=23% Similarity=0.297 Sum_probs=70.3
Q ss_pred CceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhC-CCCceeEEEeCCCCeEeecHHHHHHHHHHHh
Q 025668 133 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG-GKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (249)
Q Consensus 133 k~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~ln-P~~qVPvLvDpntG~~L~ES~aIi~YL~ekY 211 (249)
..++||++..|||++||+++|.++||+|++++++... +++++.+.| +.++||+|++ .|..+.||..|++||++.|
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~--Ks~~ll~~np~hkKVPvL~H--n~k~i~ESliiveYiDe~w 83 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTN--KSEWLLEKNPVHKKVPVLEH--NGKPICESLIIVEYIDETW 83 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCC--CCHHHHHhccccccCCEEEE--CCceehhhHHHHHHHHhhc
Confidence 5799999999999999999999999999999998753 566777889 7999999998 5777999999999999999
Q ss_pred CCC
Q 025668 212 GKG 214 (249)
Q Consensus 212 ~~~ 214 (249)
..+
T Consensus 84 ~~~ 86 (231)
T KOG0406|consen 84 PSG 86 (231)
T ss_pred cCC
Confidence 953
No 38
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.48 E-value=1.7e-13 Score=99.48 Aligned_cols=65 Identities=23% Similarity=0.408 Sum_probs=56.8
Q ss_pred eEEEEcC-------CChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHH
Q 025668 135 LQLFEFE-------ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYL 207 (249)
Q Consensus 135 L~LYs~e-------~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL 207 (249)
++||.+. .||+|++|+++|+++||+|+.++++.. .++|.++||+|++ +|..++||.+|++||
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~---------~~~p~g~vP~l~~--~g~~l~es~~I~~yL 69 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP---------WRSPTGKLPFLEL--NGEKIADSEKIIEYL 69 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc---------ccCCCcccCEEEE--CCEEEcCHHHHHHHH
Confidence 3566666 899999999999999999999998642 1689999999998 689999999999999
Q ss_pred HHH
Q 025668 208 FQQ 210 (249)
Q Consensus 208 ~ek 210 (249)
+++
T Consensus 70 ~~~ 72 (72)
T cd03054 70 KKK 72 (72)
T ss_pred hhC
Confidence 874
No 39
>PLN02378 glutathione S-transferase DHAR1
Probab=99.47 E-value=1.2e-13 Score=119.72 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=61.2
Q ss_pred cCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHhCCC
Q 025668 140 FEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (249)
Q Consensus 140 ~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY~~~ 214 (249)
+..||||++|+++|+++|++|+.+.++... +.++++ ++||.++||+|+| +|..|+||.+|++||+++|+..
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~l-~inP~G~VPvL~~--~~~~l~ES~aI~~YL~~~~~~~ 87 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLSD-KPQWFL-DISPQGKVPVLKI--DDKWVTDSDVIVGILEEKYPDP 87 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCccc-CCHHHH-HhCCCCCCCEEEE--CCEEecCHHHHHHHHHHhCCCC
Confidence 446999999999999999999999887642 334554 7999999999998 5789999999999999999754
No 40
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.47 E-value=1e-13 Score=103.48 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=60.6
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhh-----CCCCceeEEEeCCCCeEeecHHHHHHHHHH
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRL-----GGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~l-----nP~~qVPvLvDpntG~~L~ES~aIi~YL~e 209 (249)
++||+++.++.|++|+++|+++|++|+.+.++.+ +++. +. .|.++||+|+| +|..|+||.||+.||.+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~----~~~~-~~~~~~~~~~g~vP~L~~--~g~~l~ES~AI~~YL~~ 74 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA----EDLE-KLKKDGSLMFQQVPMVEI--DGMKLVQTRAILNYIAG 74 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH----HHHH-hhccccCCCCCCCCEEEE--CCEEEeeHHHHHHHHHH
Confidence 5899999999999999999999999999988653 2222 22 35899999998 68999999999999999
Q ss_pred HhC
Q 025668 210 QYG 212 (249)
Q Consensus 210 kY~ 212 (249)
+|+
T Consensus 75 ~~~ 77 (79)
T cd03077 75 KYN 77 (79)
T ss_pred HcC
Confidence 987
No 41
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.47 E-value=1.9e-13 Score=103.01 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=60.3
Q ss_pred EEEEcCCChhhHHHHHHHHHcCCceEEEEcCCC--CCC-CHHHHHhh----CCCCceeEEEeCCCCeEeecHHHHHHHHH
Q 025668 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKG--SIR-HREMVRRL----GGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (249)
Q Consensus 136 ~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg--~~~-~re~l~~l----nP~~qVPvLvDpntG~~L~ES~aIi~YL~ 208 (249)
+||+++.++.|+++|++|.++||+|+.+.++.. +.. ..++.... .|.++||+|+| +|..|+||.||+.||+
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~--~g~~l~ES~AIl~YLa 79 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYID--GDVKLTQSNAILRYIA 79 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEE--CCEEEeehHHHHHHHh
Confidence 689999999999999999999999999888642 221 23443222 29999999998 6899999999999999
Q ss_pred HHh
Q 025668 209 QQY 211 (249)
Q Consensus 209 ekY 211 (249)
++|
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 875
No 42
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.47 E-value=2.3e-13 Score=115.49 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=64.8
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHhCCC
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY~~~ 214 (249)
|+||++..||++++||++|+++||+|+.++++.. .....+.++||.++||+|++. +|..|+||.+|++||+++|+.+
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~--~~~~~~~~~nP~g~vP~L~~~-~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPY--NADNGVAQYNPLGKVPALVTE-EGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCC--CCchhhhhcCCccCCCeEEeC-CCCeeecHHHHHHHHHHhCCCC
Confidence 5899999999999999999999999999887642 222234468999999999852 6899999999999999998654
No 43
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.1e-13 Score=120.67 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=69.7
Q ss_pred CceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCC--CCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHH
Q 025668 133 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (249)
Q Consensus 133 k~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~k--g~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ek 210 (249)
.+.+||+|..|.++.+||++|..+||||+.++++. ++......++++||..+||.|++ +|..+.||.||++||+++
T Consensus 4 ~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl~eS~AII~YLeEt 81 (217)
T KOG0868|consen 4 AKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTLTESLAIIEYLEET 81 (217)
T ss_pred ccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEeehHHHHHHHHHhc
Confidence 36789999888889999999999999999998863 32233334568999999999998 799999999999999999
Q ss_pred hCCCCC
Q 025668 211 YGKGRS 216 (249)
Q Consensus 211 Y~~~~~ 216 (249)
|++...
T Consensus 82 ~P~ppL 87 (217)
T KOG0868|consen 82 YPDPPL 87 (217)
T ss_pred CCCCCC
Confidence 998753
No 44
>PLN02395 glutathione S-transferase
Probab=99.44 E-value=1.1e-12 Score=112.22 Aligned_cols=76 Identities=20% Similarity=0.328 Sum_probs=64.4
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCC--CCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHh
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~k--g~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY 211 (249)
.++||+...| ++++|+++|.|+||+|+.+.++. ++...++++ ++||.++||+|+| +|..|+||.+|++||+++|
T Consensus 2 ~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~-~~nP~g~vP~L~~--~~~~l~ES~aI~~YL~~~~ 77 (215)
T PLN02395 2 VLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYL-ALQPFGVVPVIVD--GDYKIFESRAIMRYYAEKY 77 (215)
T ss_pred eEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHH-hhCCCCCCCEEEE--CCEEEEcHHHHHHHHHHHc
Confidence 4799987654 68999999999999999988764 334445555 7999999999998 6789999999999999999
Q ss_pred CC
Q 025668 212 GK 213 (249)
Q Consensus 212 ~~ 213 (249)
+.
T Consensus 78 ~~ 79 (215)
T PLN02395 78 RS 79 (215)
T ss_pred CC
Confidence 75
No 45
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.44 E-value=3.7e-13 Score=98.88 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=56.3
Q ss_pred cCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHH
Q 025668 140 FEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (249)
Q Consensus 140 ~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ 208 (249)
...||+|++|+++|+++||+|+.+.++...+...+.++++||.++||+|++ +|..++||.+|++||.
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVD--GGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEE--CCEEEEcHHHHHHHhC
Confidence 347999999999999999999999887543323344557999999999998 6899999999999984
No 46
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.44 E-value=2.6e-13 Score=115.39 Aligned_cols=79 Identities=24% Similarity=0.261 Sum_probs=67.1
Q ss_pred EEEEcCCChhhHHHHHHHHHcCCceEEEEcCCC---CCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHhC
Q 025668 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKG---SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 212 (249)
Q Consensus 136 ~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg---~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY~ 212 (249)
+||++..||+|++||++|.++||+|+.+.++.. ++..++ ++++||.++||+|+| +|..|+||.+|++||+++|+
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~-~~~~nP~g~vP~L~~--~g~~l~ES~aI~~yl~~~~~ 77 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPE-FLALNPQGLVPTLDI--DGEVLTQSLAIIEYLEETYP 77 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChh-hhhcCCCCcCCEEEE--CCEEeecHHHHHHHHHHhCC
Confidence 489888999999999999999999999888742 333344 457999999999998 68999999999999999998
Q ss_pred CC-CCC
Q 025668 213 KG-RSP 217 (249)
Q Consensus 213 ~~-~~P 217 (249)
.. ..|
T Consensus 78 ~~~l~p 83 (210)
T TIGR01262 78 DPPLLP 83 (210)
T ss_pred CCCCCC
Confidence 64 445
No 47
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.42 E-value=5e-13 Score=119.90 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=62.0
Q ss_pred cCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHhCCC
Q 025668 140 FEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (249)
Q Consensus 140 ~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY~~~ 214 (249)
...||||++|+++|.++||+|+.++++... +.+++ +++||.++||+|+| +|..++||.+|++||+++|+.+
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~-~~~~f-l~inP~g~vPvL~~--~g~~l~ES~aI~eYL~e~~~~~ 86 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKR-KPEDL-QNLAPGTHPPFLTY--NTEVKTDVNKIEEFLEETLCPP 86 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCC-CCHHH-HHHCcCCCCCEEEE--CCEEeecHHHHHHHHHHHcCCC
Confidence 457999999999999999999999997642 33454 57999999999998 6899999999999999999764
No 48
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.41 E-value=5.5e-13 Score=112.70 Aligned_cols=78 Identities=17% Similarity=0.182 Sum_probs=64.0
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCC--C-CCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHh
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKG--S-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg--~-~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY 211 (249)
|+||+...+ ++++|+++|+|+||+|+.+.++.. + ...++ +.++||.++||+|++. +|..|+||.+|++||+++|
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~-~~~~nP~g~vPvL~~~-~g~~l~eS~aI~~YL~~~~ 77 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDD-YLAINPKGQVPALLLD-DGTLLTEGVAIMQYLADSV 77 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChH-HHHhCcCCCCCeEEeC-CCcEeecHHHHHHHHHHhC
Confidence 589998754 799999999999999999877642 2 22344 4579999999999853 6899999999999999999
Q ss_pred CCCC
Q 025668 212 GKGR 215 (249)
Q Consensus 212 ~~~~ 215 (249)
+.+.
T Consensus 78 ~~~~ 81 (201)
T PRK10542 78 PDRQ 81 (201)
T ss_pred cccc
Confidence 8653
No 49
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.39 E-value=2.5e-12 Score=95.34 Aligned_cols=71 Identities=24% Similarity=0.312 Sum_probs=56.5
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCC--CCCCCHHHHHhhCCC-CceeEEEeCCCCeEeecHHHHHHHHHH
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGK-EQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~k--g~~~~re~l~~lnP~-~qVPvLvDpntG~~L~ES~aIi~YL~e 209 (249)
++||...+ .|.++|++|+++|++|+.+.++. ++.+.+++ ++.+|. ++||+|+|+ +|..++||.||++||++
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~-~~~~p~~g~vP~l~~~-~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEF-LAINPMFGKVPALEDG-DGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHH-HHHTTTSSSSSEEEET-TTEEEESHHHHHHHHHH
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEecccccccchhh-hhcccccceeeEEEEC-CCCEEEcHHHHHHHhCC
Confidence 45555544 99999999999999999987753 44445555 479999 999999994 59999999999999985
No 50
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.38 E-value=3e-12 Score=95.50 Aligned_cols=75 Identities=23% Similarity=0.450 Sum_probs=64.4
Q ss_pred CCCCceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHH
Q 025668 130 DSPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (249)
Q Consensus 130 ~pek~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ 208 (249)
.-+++++||+.++||||++++.+|+++|++|+.++++.... .. .+.++++..+||+++. +|..|.++.+|.+||+
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~-~~-~~~~~~g~~~vP~i~i--~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDAR-GR-SLRAVTGATTVPQVFI--GGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChH-HH-HHHHHHCCCCcCeEEE--CCEEEcCHHHHHHHhC
Confidence 44568999999999999999999999999999999976532 23 3456788999999987 6899999999999984
No 51
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.5e-12 Score=112.88 Aligned_cols=76 Identities=36% Similarity=0.576 Sum_probs=70.1
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEc--CCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHh
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPC--PKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v--~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY 211 (249)
+++||+...+|.|++|.+++.++|++|+.+.+ ..+++..++|+ ++||.++||+|+| +|..++||.||+.||.++|
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl-~~nP~~kVP~l~d--~~~~l~eS~AI~~Yl~~ky 78 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFL-KLNPLGKVPALED--GGLTLWESHAILRYLAEKY 78 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHH-hcCcCCCCCeEec--CCeEEeeHHHHHHHHHHHc
Confidence 58999999999999999999999999999855 45778888888 6999999999999 5999999999999999999
Q ss_pred C
Q 025668 212 G 212 (249)
Q Consensus 212 ~ 212 (249)
+
T Consensus 79 ~ 79 (226)
T KOG0867|consen 79 G 79 (226)
T ss_pred C
Confidence 8
No 52
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.36 E-value=1.8e-12 Score=117.78 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=60.4
Q ss_pred CCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHhCCC
Q 025668 141 EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (249)
Q Consensus 141 e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY~~~ 214 (249)
..||||++|+++|+|+||+|+.+.++... +..++ .++||.++||+|++ +|..|+||.+|++||+++|+..
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~f-l~iNP~GkVPvL~~--d~~~L~ES~aI~~YL~e~~p~~ 140 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWF-LKISPEGKVPVVKL--DEKWVADSDVITQALEEKYPDP 140 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHH-HhhCCCCCCCEEEE--CCEEEecHHHHHHHHHHHCCCC
Confidence 35999999999999999999999887642 33444 57999999999998 5679999999999999999864
No 53
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.34 E-value=6.8e-12 Score=91.32 Aligned_cols=71 Identities=28% Similarity=0.477 Sum_probs=62.2
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHH
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ 208 (249)
+++||+.++||||.+++.+|+++|++|+.++++.+. ....++++++..+||+++. +|..+.++.+|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~--~~~~~~~~~g~~~vP~ifi--~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI--TGRSLRAVTGAMTVPQVFI--DGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh--hHHHHHHHhCCCCcCeEEE--CCEEEeCHHHHHHHhC
Confidence 689999999999999999999999999999998654 2334556788999999987 6899999999999984
No 54
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.34 E-value=4.4e-12 Score=109.04 Aligned_cols=75 Identities=20% Similarity=0.223 Sum_probs=64.0
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHH-----H--hhCCCCceeEEEeCCCCeEeecHHHHHHH
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMV-----R--RLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l-----~--~lnP~~qVPvLvDpntG~~L~ES~aIi~Y 206 (249)
+++||+++.++.|++||++|+++||+|+.+.+.. .. .+++ + +.||.++||+|+| +|..|+||.||+.|
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~--~~-~~~~~~~~~~~~~~nP~g~vP~L~~--~~~~l~eS~AI~~Y 78 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE--NG-DAFIEFKNFKKEKDTPFEQVPILEM--DNIIFAQSQAIVRY 78 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc--cc-hHHHHHHhccccCCCCCCCCCEEEE--CCEEEecHHHHHHH
Confidence 4899999999999999999999999999997742 11 2332 1 3799999999998 68999999999999
Q ss_pred HHHHhCC
Q 025668 207 LFQQYGK 213 (249)
Q Consensus 207 L~ekY~~ 213 (249)
|+++|+.
T Consensus 79 La~~~~~ 85 (205)
T PTZ00057 79 LSKKYKI 85 (205)
T ss_pred HHHHcCC
Confidence 9999974
No 55
>PRK10638 glutaredoxin 3; Provisional
Probab=99.20 E-value=6.8e-11 Score=88.69 Aligned_cols=72 Identities=17% Similarity=0.384 Sum_probs=61.9
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHH
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ 208 (249)
.++||+.++||||++|+.+|+++||+|+.++++.+.. .++.+.+.+|..+||+|+. +|..+....++..+-.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~-~~~~l~~~~g~~~vP~i~~--~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAA-KREEMIKRSGRTTVPQIFI--DAQHIGGCDDLYALDA 74 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHH-HHHHHHHHhCCCCcCEEEE--CCEEEeCHHHHHHHHH
Confidence 5899999999999999999999999999999986542 3445667899999999987 6899999999887744
No 56
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=7.3e-11 Score=102.95 Aligned_cols=76 Identities=32% Similarity=0.519 Sum_probs=66.5
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHhCCC
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY~~~ 214 (249)
|+||-|+.||||.++|++.-.+|||++.+-+..+++..+- ++-|..|||+|+- ++|..|-||.+|++|+++.++..
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~---rmiG~KqVPiL~K-edg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPI---RMIGQKQVPILQK-EDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChh---hhhcccccceEEc-cccccchhhhHHHHHHHHhcCch
Confidence 6899999999999999999999999999877666655553 4667999999986 48999999999999999999865
No 57
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.13 E-value=3.2e-10 Score=79.34 Aligned_cols=70 Identities=20% Similarity=0.418 Sum_probs=60.6
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHH
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~Y 206 (249)
+++||+.++||+|++++.+|.+++++|+.+++..... ..+.+++++|..++|+++. +|..+.+..+|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~-~~~~l~~~~~~~~~P~~~~--~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGE-LREELKELSGWPTVPQIFI--NGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHH-HHHHHHHHhCCCCcCEEEE--CCEEEecHHHHHHh
Confidence 5899999999999999999999999999999986543 4456667899999999987 68999999888764
No 58
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.11 E-value=2.2e-10 Score=86.36 Aligned_cols=64 Identities=19% Similarity=0.220 Sum_probs=52.0
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHH
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ek 210 (249)
..|+. .+++|.+++++|+++|+||+.+....+ + ..+|.++||+|++ +|..|.||.+|+.||.++
T Consensus 11 ~~~~~--~~~~~~kv~~~L~elglpye~~~~~~~-----~---~~~P~GkVP~L~~--dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 11 QILLP--DNASCLAVQTFLKMCNLPFNVRCRANA-----E---FMSPSGKVPFIRV--GNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred eeecC--CCCCHHHHHHHHHHcCCCcEEEecCCc-----c---ccCCCCcccEEEE--CCEEEeCHHHHHHHHhcC
Confidence 44543 478999999999999999999854321 1 2577899999998 689999999999999864
No 59
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.10 E-value=3.9e-10 Score=79.49 Aligned_cols=71 Identities=18% Similarity=0.404 Sum_probs=58.3
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEe--ecHHHHHHHH
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM--YESGDIVNYL 207 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L--~ES~aIi~YL 207 (249)
+++||+.++||+|++++.+|++++++|+.++++.+.... +.+.+.++...||+|++ +|..+ ++..+|.+||
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~-~~~~~~~~~~~vP~~~~--~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAR-EEVLKVLGQRGVPVIVI--GHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHH-HHHHHHhCCCcccEEEE--CCEEEeeCCHHHHHHHh
Confidence 589999999999999999999999999999997654322 33446788999999998 47667 7888888776
No 60
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.07 E-value=5e-10 Score=81.81 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=58.0
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHH
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~ 205 (249)
.++||+.++||+|++++.+|+++||+|+.+++.++.. .++.+.+++|..+||+++. +|..+..-.++.+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~-~~~el~~~~g~~~vP~v~i--~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPE-RKAELEERTGSSVVPQIFF--NEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHH-HHHHHHHHhCCCCcCEEEE--CCEEEeCHHHHHh
Confidence 5899999999999999999999999999999987643 3445667899999999987 5788877766654
No 61
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.07 E-value=6.9e-10 Score=80.39 Aligned_cols=72 Identities=15% Similarity=0.308 Sum_probs=58.4
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCC-ceeEEEeCCCCeEeecHHHHHHHHH
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKE-QFPFLIDPNTGVSMYESGDIVNYLF 208 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~-qVPvLvDpntG~~L~ES~aIi~YL~ 208 (249)
+++||+.++||+|.+++.+|+++||+|+.+++..... ..+.+.+..+.. +||+++. +|..+....++.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~-~~~~~~~~~~~~~~vP~v~i--~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPA-LREEMINRSGGRRTVPQIFI--GDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHH-HHHHHHHHhCCCCccCEEEE--CCEEEeChHHHHHHHh
Confidence 3899999999999999999999999999999986522 223343455555 9999987 6899999999988754
No 62
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=9.9e-10 Score=83.17 Aligned_cols=73 Identities=19% Similarity=0.387 Sum_probs=59.2
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCC-CCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHH
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI-RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~-~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ 208 (249)
.+++|+.++||||.+++.+|.++|++|+++++...+. ..++++++.+|..+||+++. +|..+....++.++..
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~igg~~d~~~~~~ 75 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHVGGCDDLDALEA 75 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEEeCcccHHHHHh
Confidence 5899999999999999999999999999999987653 34567766669999999988 4666766555555543
No 63
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.03 E-value=1.6e-09 Score=82.38 Aligned_cols=75 Identities=16% Similarity=0.346 Sum_probs=60.9
Q ss_pred eEEEEcCCChhhHHHHHHHHHcC-----CceEEEEcCCCCCCCHHHHHhhCCC--CceeEEEeCCCCeEeecHHHHHHHH
Q 025668 135 LQLFEFEACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGK--EQFPFLIDPNTGVSMYESGDIVNYL 207 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELg-----Ipye~v~v~kg~~~~re~l~~lnP~--~qVPvLvDpntG~~L~ES~aIi~YL 207 (249)
++||+.++||||.+++.+|++++ ++|+.+++..... .++.+.+..+. ..||++.. +|..+.++.+|.+|+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~-~~~~l~~~~g~~~~tVP~ifi--~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGI-SKADLEKTVGKPVETVPQIFV--DEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHH-HHHHHHHHhCCCCCCcCeEEE--CCEEecCHHHHHHHH
Confidence 68999999999999999999994 6788888874321 23334455654 78999977 689999999999999
Q ss_pred HHHhC
Q 025668 208 FQQYG 212 (249)
Q Consensus 208 ~ekY~ 212 (249)
.++|+
T Consensus 79 ~~~~~ 83 (86)
T TIGR02183 79 KENFD 83 (86)
T ss_pred Hhccc
Confidence 99876
No 64
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.02 E-value=1.8e-09 Score=77.77 Aligned_cols=74 Identities=12% Similarity=0.254 Sum_probs=58.8
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhC-CCCceeEEEeCCCCeEeec--HHHHHHHHHH
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG-GKEQFPFLIDPNTGVSMYE--SGDIVNYLFQ 209 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~ln-P~~qVPvLvDpntG~~L~E--S~aIi~YL~e 209 (249)
.++||+.++||+|++++.+|.+++++|+.++++++. ...+++++++ +...||+++.. +|..+.+ ..+|..+|.+
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~-~~~~~~~~~~~~~~~vP~i~~~-~g~~l~~~~~~~~~~~l~~ 77 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDE-GAADRVVSVNNGNMTVPTVKFA-DGSFLTNPSAAQVKAKLQE 77 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCH-hHHHHHHHHhCCCceeCEEEEC-CCeEecCCCHHHHHHHhhC
Confidence 378999999999999999999999999999998654 3345555676 89999999753 5666555 6678888753
No 65
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.00 E-value=2e-09 Score=80.89 Aligned_cols=76 Identities=20% Similarity=0.354 Sum_probs=63.2
Q ss_pred ceEEEEcCCChhhHHHHHHHHH-----cCCceEEEEcCCCCCCCHHHHHhhCCC--CceeEEEeCCCCeEeecHHHHHHH
Q 025668 134 RLQLFEFEACPFCRRVREAITE-----LDLSVEVFPCPKGSIRHREMVRRLGGK--EQFPFLIDPNTGVSMYESGDIVNY 206 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~E-----LgIpye~v~v~kg~~~~re~l~~lnP~--~qVPvLvDpntG~~L~ES~aIi~Y 206 (249)
.++||+.++||+|.+++.+|++ .+++|+.+++...... .+.+.+..+. .+||.++. +|..+....+|.+|
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~-~~el~~~~~~~~~~vP~ifi--~g~~igg~~~~~~~ 78 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGIS-KADLEKTVGKPVETVPQIFV--DQKHIGGCTDFEAY 78 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHH-HHHHHHHHCCCCCcCCEEEE--CCEEEcCHHHHHHH
Confidence 5899999999999999999999 7999999999864322 3334455544 78999977 68999999999999
Q ss_pred HHHHhC
Q 025668 207 LFQQYG 212 (249)
Q Consensus 207 L~ekY~ 212 (249)
+.+.|+
T Consensus 79 ~~~~~~ 84 (85)
T PRK11200 79 VKENLG 84 (85)
T ss_pred HHHhcc
Confidence 999886
No 66
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=98.98 E-value=5.6e-10 Score=102.30 Aligned_cols=85 Identities=19% Similarity=0.282 Sum_probs=73.3
Q ss_pred CCCCCceEEEEcCCChhhHHHHHHHHHcCCceEEEEcC--CCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHH
Q 025668 129 SDSPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCP--KGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (249)
Q Consensus 129 ~~pek~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~--kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~Y 206 (249)
+.+...++||.++.+--++|||+++.|+||+|+.++|+ .+++..+.|+ ++||++.||||++ +...|.|+..||+|
T Consensus 21 ~~~~e~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFm-rlNp~gevPVl~~--g~~II~d~tqIIdY 97 (325)
T KOG4420|consen 21 HWPRESLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFM-RLNPGGEVPVLIH--GDNIISDYTQIIDY 97 (325)
T ss_pred CCchhcceeeecCcccccceeeeehhhcccccceeeccCccccccCchhe-ecCCCCCCceEec--CCeecccHHHHHHH
Confidence 34445699999999999999999999999999998775 4667777776 6999999999998 56889999999999
Q ss_pred HHHHhCCCCC
Q 025668 207 LFQQYGKGRS 216 (249)
Q Consensus 207 L~ekY~~~~~ 216 (249)
|+++|-.+..
T Consensus 98 vErtf~ger~ 107 (325)
T KOG4420|consen 98 VERTFTGERV 107 (325)
T ss_pred HHHhhccccc
Confidence 9999987654
No 67
>PHA03050 glutaredoxin; Provisional
Probab=98.94 E-value=3.8e-09 Score=84.40 Aligned_cols=73 Identities=16% Similarity=0.363 Sum_probs=61.6
Q ss_pred CCceEEEEcCCChhhHHHHHHHHHcCC---ceEEEEcCCCC--CCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHH
Q 025668 132 PTRLQLFEFEACPFCRRVREAITELDL---SVEVFPCPKGS--IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (249)
Q Consensus 132 ek~L~LYs~e~SPyCrkVR~~L~ELgI---pye~v~v~kg~--~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~Y 206 (249)
+++++||+.++||||.+++.+|+++++ +|+.+++++.. ...++.+.++++..+||.++. +|..+...+++.+.
T Consensus 12 ~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iGG~ddl~~l 89 (108)
T PHA03050 12 NNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIGGYSDLLEI 89 (108)
T ss_pred cCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEeChHHHHHH
Confidence 457999999999999999999999999 89999998632 233567778899999999987 58888888888763
No 68
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.92 E-value=5.7e-09 Score=76.49 Aligned_cols=74 Identities=18% Similarity=0.354 Sum_probs=62.6
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCC--CHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHH
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIR--HREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~--~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~e 209 (249)
++++|+.++||+|.+++.+|.+++++|+.++++..+.. .++.++++++..++|+++. +|..+.+..+|+++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 48999999999999999999999999999998765421 2345667888999999987 68999999999998764
No 69
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.92 E-value=3.4e-09 Score=74.64 Aligned_cols=63 Identities=14% Similarity=0.381 Sum_probs=51.6
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeec
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE 199 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~E 199 (249)
+++||+..+||+|++++.+|.+++++|..++++.+.+ ..+.+.+++|..+||+|++ +|..+.+
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~-~~~~~~~~~~~~~vP~i~~--~~~~i~g 63 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPE-ALEELKKLNGYRSVPVVVI--GDEHLSG 63 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHH-HHHHHHHHcCCcccCEEEE--CCEEEec
Confidence 4799999999999999999999999999999976432 3345567889999999998 4555543
No 70
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.92 E-value=7.7e-09 Score=81.04 Aligned_cols=75 Identities=17% Similarity=0.276 Sum_probs=61.1
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCC--CHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHH
Q 025668 131 SPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIR--HREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYL 207 (249)
Q Consensus 131 pek~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~--~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL 207 (249)
.+++++||+.++||||++++.+|.++|++|+.++++..+.. .++.+.++++..+||.+.. +|..+...+++.+..
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVGGLENVMALH 82 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEcCHHHHHHHH
Confidence 45689999999999999999999999999999999865322 2234556678999999977 588888888877653
No 71
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.90 E-value=6.6e-09 Score=78.74 Aligned_cols=73 Identities=18% Similarity=0.309 Sum_probs=55.2
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHH
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ 208 (249)
+++||+.++||||.++|.+|+++||+|+.++++.+. ...+.++ .+|..+||+++..+.-..=|+...|-+..-
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~-~~~~~~~-~~g~~~vPvv~i~~~~~~Gf~~~~l~~~~~ 74 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVP-EAAETLR-AQGFRQLPVVIAGDLSWSGFRPDMINRLHP 74 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCH-HHHHHHH-HcCCCCcCEEEECCEEEecCCHHHHHHHHH
Confidence 589999999999999999999999999999998643 2334443 468999999988422234456666665543
No 72
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.90 E-value=5.2e-09 Score=77.11 Aligned_cols=72 Identities=13% Similarity=0.302 Sum_probs=59.8
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHH
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~e 209 (249)
++||+.++||+|.+++.+|+++|++|+.++++.... ..+.+.+..+...||+++. +|..+....++.++-++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~-~~~~~~~~~g~~~vP~i~i--~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPA-LRDEMMQRSGRRTVPQIFI--GDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHH-HHHHHHHHhCCCCcCEEEE--CCEEEcChHHHHHHHHc
Confidence 589999999999999999999999999999986532 3344556778999999987 68888888888877553
No 73
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.89 E-value=8.6e-09 Score=80.49 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=62.3
Q ss_pred CCCceEEEEc-----CCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHH
Q 025668 131 SPTRLQLFEF-----EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (249)
Q Consensus 131 pek~L~LYs~-----e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~ 205 (249)
.++++.||.. ++||||.+++.+|.++|++|+.+++..+ +..++.+.++++..+||.+.. +|..+...+++.+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi--~g~~iGG~ddl~~ 86 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLYV--KGEFVGGCDIIME 86 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEEE--CCEEEeChHHHHH
Confidence 4578999976 7899999999999999999999999754 344566777889999999987 5888888888776
Q ss_pred HHH
Q 025668 206 YLF 208 (249)
Q Consensus 206 YL~ 208 (249)
...
T Consensus 87 l~~ 89 (97)
T TIGR00365 87 MYQ 89 (97)
T ss_pred HHH
Confidence 543
No 74
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.86 E-value=1.4e-08 Score=77.79 Aligned_cols=75 Identities=17% Similarity=0.228 Sum_probs=62.9
Q ss_pred CCCceEEEEc-----CCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHH
Q 025668 131 SPTRLQLFEF-----EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (249)
Q Consensus 131 pek~L~LYs~-----e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~ 205 (249)
.++++++|.. ++||||.+++.+|+++|++|+.+++..+ ...++.+.+.++..+||++.. +|..+....++.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~vfi--~g~~iGG~~~l~~ 82 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED-EEVRQGLKEYSNWPTFPQLYV--NGELVGGCDIVKE 82 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEEEE--CCEEEeCHHHHHH
Confidence 3578999987 5999999999999999999999999765 344566777889999999977 6888999888887
Q ss_pred HHH
Q 025668 206 YLF 208 (249)
Q Consensus 206 YL~ 208 (249)
+..
T Consensus 83 l~~ 85 (90)
T cd03028 83 MHE 85 (90)
T ss_pred HHH
Confidence 543
No 75
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.83 E-value=5e-09 Score=73.76 Aligned_cols=59 Identities=20% Similarity=0.476 Sum_probs=50.4
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeE
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 196 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~ 196 (249)
++||+.++||+|.+++.+|+++|++|+.++++... ..++.+++..+..++|+++. +|..
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~-~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE-EAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH-HHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch-hHHHHHHHHcCCCccCEEEE--CCEE
Confidence 68999999999999999999999999999998753 45566767778999999977 4654
No 76
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.81 E-value=1.2e-08 Score=94.56 Aligned_cols=72 Identities=26% Similarity=0.490 Sum_probs=60.0
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHh
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY 211 (249)
.++||.|+.||||-|||.+|+..||+|.+++|+.- .+..+ +.....+||+|+. +|+.|.||..||.-|+..-
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV---~r~eI-k~SsykKVPil~~--~Geqm~dSsvIIs~laTyL 161 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPV---LRQEI-KWSSYKKVPILLI--RGEQMVDSSVIISLLATYL 161 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecch---hhhhc-cccccccccEEEe--ccceechhHHHHHHHHHHh
Confidence 68999999999999999999999999999998753 23334 4667899999976 4778999999998775443
No 77
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.79 E-value=3.9e-08 Score=72.03 Aligned_cols=73 Identities=18% Similarity=0.410 Sum_probs=60.3
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCc--eEEEEcCCCCC--CCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHH
Q 025668 135 LQLFEFEACPFCRRVREAITELDLS--VEVFPCPKGSI--RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIp--ye~v~v~kg~~--~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~e 209 (249)
+++|+.++||+|++++.+|++++++ |+.++++.... ...+++.+.++..+||.++. +|..+.++.+++++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 5799999999999999999999999 99999876432 12345666788889999977 68999999999988764
No 78
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.78 E-value=2.4e-08 Score=72.90 Aligned_cols=54 Identities=17% Similarity=0.406 Sum_probs=45.4
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEe
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvD 190 (249)
++||+.++||+|++++.+|+++||+|+.+++..+. ...+.++ ..+..+||+++.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~-~~~~~~~-~~g~~~vP~v~~ 54 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQP-EAIDYVK-AQGFRQVPVIVA 54 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCH-HHHHHHH-HcCCcccCEEEE
Confidence 58999999999999999999999999999998653 2344454 357889999987
No 79
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.65 E-value=1.3e-07 Score=70.32 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=49.6
Q ss_pred CChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHH
Q 025668 142 ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (249)
Q Consensus 142 ~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ek 210 (249)
.+|+|.++...|+..|++|+.+.... . ...|.+++|+|++ +|..+.+|..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n-~--------~~sp~gkLP~l~~--~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNN-P--------WRSPTGKLPALLT--SGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCC-C--------CCCCCCccCEEEE--CCEEecChHHHHHHHHHc
Confidence 57999999999999999998875432 1 2578999999998 589999999999999875
No 80
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.7e-07 Score=81.92 Aligned_cols=79 Identities=19% Similarity=0.231 Sum_probs=68.0
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCC-CCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHhC
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 212 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~-~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY~ 212 (249)
.++|+.|.....|..+|+++...|++||.+.+..++ |. .++...|.+|+|+|.. ||..+.+|.||++||+++||
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~---~~K~~~pfgqlP~l~v--Dg~~i~QS~AI~RyLArk~g 77 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWE---ELKDKMPFGQLPVLEV--DGKKLVQSRAILRYLARKFG 77 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchh---hhcccCCCCCCCEEeE--CCEeeccHHHHHHHHHHHhC
Confidence 579999999999999999999999999999998876 32 2334589999999966 59999999999999999999
Q ss_pred -CCCCC
Q 025668 213 -KGRSP 217 (249)
Q Consensus 213 -~~~~P 217 (249)
.|..+
T Consensus 78 l~Gkt~ 83 (206)
T KOG1695|consen 78 LAGKTE 83 (206)
T ss_pred cCCCCH
Confidence 44544
No 81
>PRK10824 glutaredoxin-4; Provisional
Probab=98.51 E-value=4.7e-07 Score=73.65 Aligned_cols=75 Identities=12% Similarity=0.145 Sum_probs=63.1
Q ss_pred CCCceEEEEc-----CCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHH
Q 025668 131 SPTRLQLFEF-----EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (249)
Q Consensus 131 pek~L~LYs~-----e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~ 205 (249)
.++++.+|.. ++||||++++.+|..+|++|..+++..+ ...++.+.++.+..+||.+.. +|..+...+++.+
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d-~~~~~~l~~~sg~~TVPQIFI--~G~~IGG~ddl~~ 89 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN-PDIRAELPKYANWPTFPQLWV--DGELVGGCDIVIE 89 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC-HHHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHHH
Confidence 4568999987 4899999999999999999999999764 345667778899999999976 6899999988887
Q ss_pred HHH
Q 025668 206 YLF 208 (249)
Q Consensus 206 YL~ 208 (249)
...
T Consensus 90 l~~ 92 (115)
T PRK10824 90 MYQ 92 (115)
T ss_pred HHH
Confidence 643
No 82
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=98.37 E-value=3.5e-06 Score=75.24 Aligned_cols=74 Identities=19% Similarity=0.290 Sum_probs=65.1
Q ss_pred CCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHhCCCCCCC
Q 025668 141 EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRSPS 218 (249)
Q Consensus 141 e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY~~~~~P~ 218 (249)
..||||+++-+.|.+++++|.+..|+.. +.+++++.+.|.+++|+|.. ++.++.|+..|.++|+++|+.+..|.
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~--~kp~~f~~~sp~~~~P~l~~--d~~~~tDs~~Ie~~Lee~l~~p~~~~ 92 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLS--RKPEWFLDISPGGKPPVLKF--DEKWVTDSDKIEEFLEEKLPPPKLPT 92 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecC--CCcHHHHhhCCCCCCCeEEe--CCceeccHHHHHHHHHHhcCCCCCcc
Confidence 3699999999999999999999887653 45667778999999999988 68999999999999999999887664
No 83
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=7.8e-06 Score=65.50 Aligned_cols=76 Identities=18% Similarity=0.410 Sum_probs=63.4
Q ss_pred CCCCceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCC--CCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHH
Q 025668 130 DSPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI--RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYL 207 (249)
Q Consensus 130 ~pek~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~--~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL 207 (249)
..++++.+|+..+||||.+++.+|..+++.+..+++++.+. .-++.+.++.+..+||.+.. .|..+....+|..+-
T Consensus 11 i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 11 ISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFIGGASDLMALH 88 (104)
T ss_pred hhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEEcCHHHHHHHH
Confidence 35679999999999999999999999999999999987643 23455667888999999977 688888888888763
No 84
>PTZ00062 glutaredoxin; Provisional
Probab=98.24 E-value=4.7e-06 Score=73.78 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=62.1
Q ss_pred CCCCceEEEEc-----CCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHH
Q 025668 130 DSPTRLQLFEF-----EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIV 204 (249)
Q Consensus 130 ~pek~L~LYs~-----e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi 204 (249)
...+++.||.. +.||||++++.+|++++|+|+.+++..++ ..++.+++..+..+||.+.. +|..+...+++.
T Consensus 110 i~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~-~~~~~l~~~sg~~TvPqVfI--~G~~IGG~d~l~ 186 (204)
T PTZ00062 110 IRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDP-DLREELKVYSNWPTYPQLYV--NGELIGGHDIIK 186 (204)
T ss_pred HhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCH-HHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHH
Confidence 34578999987 58999999999999999999999998653 45667778889999999977 588888887777
Q ss_pred HHH
Q 025668 205 NYL 207 (249)
Q Consensus 205 ~YL 207 (249)
+..
T Consensus 187 ~l~ 189 (204)
T PTZ00062 187 ELY 189 (204)
T ss_pred HHH
Confidence 643
No 85
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=98.14 E-value=8e-06 Score=78.70 Aligned_cols=69 Identities=12% Similarity=0.288 Sum_probs=54.7
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhh--------CCCCceeEEEeCCCCeEeecHHHHHH
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRL--------GGKEQFPFLIDPNTGVSMYESGDIVN 205 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~l--------nP~~qVPvLvDpntG~~L~ES~aIi~ 205 (249)
.+++|+.++||||.+++.+|.++||+|+.++++++. ...+...+. .+..+||+++. +|..+..-.++..
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~-~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~igGf~~l~~ 79 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDV-KRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHIGGYDNLMA 79 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCh-hHHHHHHHHhhccccccCCCCccCeEEE--CCEEEeCchHHHH
Confidence 589999999999999999999999999999998653 223333232 46789999977 5777777777755
No 86
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=98.09 E-value=1.5e-05 Score=67.34 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=55.5
Q ss_pred ceEEEEcC------CChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCC----CceeEEEeCCCCeEeecHHHH
Q 025668 134 RLQLFEFE------ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGK----EQFPFLIDPNTGVSMYESGDI 203 (249)
Q Consensus 134 ~L~LYs~e------~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~----~qVPvLvDpntG~~L~ES~aI 203 (249)
.++||... .||+|.+|+.+|+.++|+|++++++.+. ..++.++++.+. .+||.+.. +|..|....++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~-~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDS-GFREELRELLGAELKAVSLPRVFV--DGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCH-HHHHHHHHHhCCCCCCCCCCEEEE--CCEEEecHHHH
Confidence 37899998 8999999999999999999999998653 334445555443 89999976 57888777777
Q ss_pred HHH
Q 025668 204 VNY 206 (249)
Q Consensus 204 i~Y 206 (249)
.+.
T Consensus 78 ~~L 80 (147)
T cd03031 78 LRL 80 (147)
T ss_pred HHH
Confidence 764
No 87
>PLN02907 glutamate-tRNA ligase
Probab=98.06 E-value=1.8e-05 Score=81.54 Aligned_cols=64 Identities=14% Similarity=0.091 Sum_probs=54.0
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHhCCC
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY~~~ 214 (249)
++||..+.++ +.++.++|+++|++|+.+. .+|.++||+|+++ +|..|+||.||++||++.|+..
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~--------------~~p~GkVPvLv~d-dG~~L~ES~AIl~YLa~~~p~~ 66 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP--------------SLKSGSAPTLLFS-SGEKLTGTNVLLRYIARSASLP 66 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcEEee--------------cCCCCCCcEEEEC-CCCEEECHHHHHHHHHHhCCCc
Confidence 7899887654 5568999999999999864 2589999999864 6899999999999999999754
No 88
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=97.95 E-value=5.7e-05 Score=69.65 Aligned_cols=73 Identities=22% Similarity=0.433 Sum_probs=62.7
Q ss_pred CCceEEEEcC-------CChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHH
Q 025668 132 PTRLQLFEFE-------ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIV 204 (249)
Q Consensus 132 ek~L~LYs~e-------~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi 204 (249)
..-+-||.|+ .||||.||-..|...+||||.+++... ....+|++|+++- +|+.+.+|.-|+
T Consensus 43 kD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~---------~rSr~G~lPFIEL--NGe~iaDS~~I~ 111 (281)
T KOG4244|consen 43 KDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK---------RRSRNGTLPFIEL--NGEHIADSDLIE 111 (281)
T ss_pred cCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce---------eeccCCCcceEEe--CCeeccccHHHH
Confidence 3468899997 589999999999999999999887531 2467899999987 699999999999
Q ss_pred HHHHHHhCCCC
Q 025668 205 NYLFQQYGKGR 215 (249)
Q Consensus 205 ~YL~ekY~~~~ 215 (249)
.+|.++|+-..
T Consensus 112 ~~L~~hf~~~~ 122 (281)
T KOG4244|consen 112 DRLRKHFKIPD 122 (281)
T ss_pred HHHHHHcCCCC
Confidence 99999998654
No 89
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.90 E-value=4.5e-05 Score=54.03 Aligned_cols=59 Identities=17% Similarity=0.398 Sum_probs=44.5
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc-----CCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeec
Q 025668 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE 199 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL-----gIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~E 199 (249)
.+++|+.++||+|.+++.+|+++ ++++..++++.. ++ +.+..+-..+|+++. +|..++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~----~~-l~~~~~i~~vPti~i--~~~~~~~ 65 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEF----PD-LADEYGVMSVPAIVI--NGKVEFV 65 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccC----Hh-HHHHcCCcccCEEEE--CCEEEEe
Confidence 47899999999999999999987 577777776532 33 335577788999987 4665553
No 90
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.79 E-value=2.9e-05 Score=61.80 Aligned_cols=35 Identities=17% Similarity=0.509 Sum_probs=32.6
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCC
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~ 169 (249)
++||+.++||+|++++.+|++.||+|+++++.+..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~ 35 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEP 35 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCc
Confidence 58999999999999999999999999999997654
No 91
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.64 E-value=9.2e-05 Score=57.77 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=32.3
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCC
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~ 169 (249)
++||+.++||+|++++.+|++.||+|+++++.+..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~ 35 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEP 35 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCC
Confidence 58999999999999999999999999999997643
No 92
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.59 E-value=0.00011 Score=60.53 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=33.2
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCC
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~ 169 (249)
+++||+.++||+|++++.+|++.||+|+.+++.+..
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~ 36 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSP 36 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCCh
Confidence 489999999999999999999999999999997654
No 93
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.54 E-value=0.00016 Score=57.71 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=33.0
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCC
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~ 169 (249)
+++||+.+.||+|++++.+|++.|++|+++++.+..
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~ 36 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQP 36 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCc
Confidence 489999999999999999999999999999996643
No 94
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.36 E-value=0.00028 Score=56.42 Aligned_cols=35 Identities=9% Similarity=0.358 Sum_probs=32.1
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCC
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~ 169 (249)
++||+.+.||+|++++.+|++.||+|+++++.+..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~ 35 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDG 35 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCCh
Confidence 57999999999999999999999999999997543
No 95
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.26 E-value=0.00049 Score=56.79 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=33.2
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCC
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~ 169 (249)
++++|+.+.|+.|++++.+|++.||+|+.+++.+..
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~ 36 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNS 36 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCc
Confidence 489999999999999999999999999999997654
No 96
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.23 E-value=0.00059 Score=56.37 Aligned_cols=36 Identities=14% Similarity=0.375 Sum_probs=33.2
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCC
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~ 169 (249)
+++||+.+.|+.|++++.+|++.||+|+++++.+..
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~ 36 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEP 36 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCC
Confidence 489999999999999999999999999999997654
No 97
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0012 Score=50.84 Aligned_cols=61 Identities=20% Similarity=0.358 Sum_probs=46.8
Q ss_pred EEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCC----------H--HHHHhhCCCCceeEEEeCCCCeEee
Q 025668 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRH----------R--EMVRRLGGKEQFPFLIDPNTGVSMY 198 (249)
Q Consensus 136 ~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~----------r--e~l~~lnP~~qVPvLvDpntG~~L~ 198 (249)
+||+...||-|..+.+.|+.++++|+.++|.....+- + +.+ +.++.-.||+|..+ +|..++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~v-k~~gyiGIPall~~-d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEV-KSNGYIGIPALLTD-DGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhh-hhcCcccceEEEeC-CCcEEE
Confidence 8999999999999999999999999999985432211 1 223 35888899999764 565554
No 98
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.02 E-value=0.0051 Score=45.52 Aligned_cols=57 Identities=18% Similarity=0.330 Sum_probs=42.2
Q ss_pred ceEEEEcCCChhhHHH----HHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeec
Q 025668 134 RLQLFEFEACPFCRRV----REAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE 199 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkV----R~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~E 199 (249)
.+++|. ++||+|..+ ..++++++++++++.++. .+... ..+-..+|+++. +|..+++
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~-----~~~a~-~~~v~~vPti~i--~G~~~~~ 62 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD-----MNEIL-EAGVTATPGVAV--DGELVIM 62 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHH-HcCCCcCCEEEE--CCEEEEE
Confidence 367887 899999998 668888899999988872 22233 357888999977 5655443
No 99
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.93 E-value=0.0015 Score=51.76 Aligned_cols=35 Identities=11% Similarity=0.319 Sum_probs=32.3
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCC
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~ 169 (249)
|++|+.+.|+.|++++.+|++.|++|+++++.+..
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p 35 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDG 35 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCC
Confidence 58999999999999999999999999999997654
No 100
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=96.87 E-value=0.0068 Score=45.30 Aligned_cols=57 Identities=26% Similarity=0.321 Sum_probs=48.9
Q ss_pred CChhhHHHHHHHHHcCCc---eEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHH
Q 025668 142 ACPFCRRVREAITELDLS---VEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (249)
Q Consensus 142 ~SPyCrkVR~~L~ELgIp---ye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ 208 (249)
-+|-|-.+...|+..+++ |+++....- .+.|.+++|+|++ .++..+.+-.+|++||.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~---------~~Sptg~LP~L~~-~~~~~vsg~~~Iv~yL~ 72 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNP---------WLSPTGELPALID-SGGTWVSGFRNIVEYLR 72 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCC---------CcCCCCCCCEEEE-CCCcEEECHHHHHHhhC
Confidence 479999999999999999 888876531 2589999999998 46899999999999984
No 101
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.77 E-value=0.0024 Score=51.42 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=32.5
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCC
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~ 169 (249)
++||+.+.|+-|++++.+|++.|++|+++++-+..
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p 36 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEP 36 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCC
Confidence 78999999999999999999999999999987644
No 102
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.71 E-value=0.013 Score=42.36 Aligned_cols=54 Identities=20% Similarity=0.354 Sum_probs=37.0
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc----CCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEe
Q 025668 134 RLQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL----gIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvD 190 (249)
.++||..++||+|+.+...|+++ +..+.+..++.. ..++.. +..+-..+|+++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~--~~~~~~-~~~~v~~vPt~~~ 59 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVM--ENPQKA-MEYGIMAVPAIVI 59 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCc--cCHHHH-HHcCCccCCEEEE
Confidence 47899999999999999998754 433444344322 233444 4577888999976
No 103
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.69 E-value=0.0053 Score=39.29 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=39.2
Q ss_pred eEEEEcCCChhhHHHHHHHH-----HcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeC
Q 025668 135 LQLFEFEACPFCRRVREAIT-----ELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 191 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~-----ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDp 191 (249)
+.+|...+||+|++++..+. ..++.+..+++...... .+.. ...+...+|+++.-
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~P~~~~~ 60 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPAL-EKEL-KRYGVGGVPTLVVF 60 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHH-hhHH-HhCCCccccEEEEE
Confidence 46777889999999999999 45677777777654321 1111 35778899998653
No 104
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.36 E-value=0.028 Score=42.08 Aligned_cols=51 Identities=22% Similarity=0.418 Sum_probs=37.5
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcC----CceEEEEcCCCCCCCHHHHHhhCCCCceeEEEe
Q 025668 134 RLQLFEFEACPFCRRVREAITELD----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELg----Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLvD 190 (249)
.++||+.++|+.|..++.+|.+.. +.++.++|.. .+++. +.++ ..||+|..
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~----d~~l~-~~Y~-~~IPVl~~ 55 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE----DPELF-EKYG-YRIPVLHI 55 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT----THHHH-HHSC-TSTSEEEE
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC----CHHHH-HHhc-CCCCEEEE
Confidence 379999999999999999999764 4466677763 24444 4565 47999976
No 105
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.21 E-value=0.016 Score=44.43 Aligned_cols=58 Identities=16% Similarity=0.251 Sum_probs=43.8
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc-----CCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEee
Q 025668 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY 198 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL-----gIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ 198 (249)
.+.+|..++||+|..+..++.++ ++.++.++++. .++.. +..+-..+|.++. +|..++
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~----~~e~a-~~~~V~~vPt~vi--dG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGAL----FQDEV-EERGIMSVPAIFL--NGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHh----CHHHH-HHcCCccCCEEEE--CCEEEE
Confidence 47888889999999999988887 57777788753 23433 4577888999986 566555
No 106
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.13 E-value=0.011 Score=48.71 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=33.0
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCC
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~ 169 (249)
.|+||+.+.|.-|++++.+|++.||+|+++++-+..
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p 37 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEP 37 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCC
Confidence 589999999999999999999999999999986543
No 107
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.027 Score=45.41 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=57.7
Q ss_pred CCCceEEEE-----cCCChhhHHHHHHHHHcC-CceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHH
Q 025668 131 SPTRLQLFE-----FEACPFCRRVREAITELD-LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIV 204 (249)
Q Consensus 131 pek~L~LYs-----~e~SPyCrkVR~~L~ELg-Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi 204 (249)
.++++.||- ++.|.|+.++.-+|..+| ++|..+||-.+ ..-|+-+++.+.+-++|-|.. +|+.+..++.|.
T Consensus 13 ~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d-~eiR~~lk~~s~WPT~PQLyi--~GEfvGG~DIv~ 89 (105)
T COG0278 13 KENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQD-PEIRQGLKEYSNWPTFPQLYV--NGEFVGGCDIVR 89 (105)
T ss_pred hcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccC-HHHHhccHhhcCCCCCceeeE--CCEEeccHHHHH
Confidence 456788884 467999999999999999 79999998765 344556777888999999966 588777776665
Q ss_pred HHH
Q 025668 205 NYL 207 (249)
Q Consensus 205 ~YL 207 (249)
+..
T Consensus 90 Em~ 92 (105)
T COG0278 90 EMY 92 (105)
T ss_pred HHH
Confidence 543
No 108
>PRK10853 putative reductase; Provisional
Probab=96.06 E-value=0.01 Score=48.17 Aligned_cols=36 Identities=8% Similarity=0.236 Sum_probs=33.0
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCC
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~ 169 (249)
+++||+.+.|.-|++++.+|++.|++|+++++-+..
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p 36 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDG 36 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCC
Confidence 489999999999999999999999999999986644
No 109
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.06 E-value=0.022 Score=44.52 Aligned_cols=69 Identities=9% Similarity=0.046 Sum_probs=51.1
Q ss_pred eEEEEcCCC------hhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCC----CCceeEEEeCCCCeEeecHHHHH
Q 025668 135 LQLFEFEAC------PFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGG----KEQFPFLIDPNTGVSMYESGDIV 204 (249)
Q Consensus 135 L~LYs~e~S------PyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP----~~qVPvLvDpntG~~L~ES~aIi 204 (249)
++||....+ -.|+.|+.+|+.++|+|+.++|..++ ..++++.+..+ ...||.+.. +|..+....++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~-~~r~em~~~~~~~~g~~tvPQIFi--~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNE-ENRQWMRENVPNENGKPLPPQIFN--GDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCH-HHHHHHHHhcCCCCCCCCCCEEEE--CCEEeeCHHHHH
Confidence 566765432 36889999999999999999998654 44555555543 589998865 578888888877
Q ss_pred HH
Q 025668 205 NY 206 (249)
Q Consensus 205 ~Y 206 (249)
..
T Consensus 79 ~l 80 (92)
T cd03030 79 EA 80 (92)
T ss_pred HH
Confidence 64
No 110
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.99 E-value=0.015 Score=47.31 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=33.0
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCC
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~ 169 (249)
+++||+.+.|--|++++.+|++.||+|+++++-+..
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~ 37 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTP 37 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCC
Confidence 699999999999999999999999999999886543
No 111
>PRK10026 arsenate reductase; Provisional
Probab=95.81 E-value=0.017 Score=48.64 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=32.5
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCC
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKG 168 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg 168 (249)
.|+||+.+.|.-|++++.+|++.|++|+++++-+.
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ 37 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLET 37 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCC
Confidence 68999999999999999999999999999998554
No 112
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=95.76 E-value=0.021 Score=45.54 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=32.1
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCC
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~ 169 (249)
|+||+.+.|.-|++++.+|++.|++|+++++-+..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~ 35 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTP 35 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCC
Confidence 58999999999999999999999999999986543
No 113
>PHA02125 thioredoxin-like protein
Probab=95.70 E-value=0.043 Score=40.21 Aligned_cols=52 Identities=17% Similarity=0.317 Sum_probs=38.9
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEe
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvD 190 (249)
++.+|+.++||.|+.+...|+++ ++++.+++.+. .++.. +.++-..+|++++
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~--~~~l~-~~~~v~~~PT~~~ 52 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDE--GVELT-AKHHIRSLPTLVN 52 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCC--CHHHH-HHcCCceeCeEEC
Confidence 47899999999999999999865 45666665432 34444 5677889999985
No 114
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=95.62 E-value=0.025 Score=45.27 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=32.6
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCC
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI 170 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~ 170 (249)
++||+.+.|+-|++++.+|++.|++|+++++-+...
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~ 36 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPP 36 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCc
Confidence 589999999999999999999999999999876543
No 115
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=95.60 E-value=0.1 Score=38.47 Aligned_cols=58 Identities=24% Similarity=0.508 Sum_probs=38.8
Q ss_pred ceEEEEcCCChhhHHHHH----HHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecH
Q 025668 134 RLQLFEFEACPFCRRVRE----AITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYES 200 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~----~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES 200 (249)
.+++| ..+||+|..+.. ++.++|+.++.+++. ..+.+ ..++-..+|.|+. +|...+..
T Consensus 2 ~I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~-----~~~~~-~~ygv~~vPalvI--ng~~~~~G 63 (76)
T PF13192_consen 2 KIKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDIE-----DFEEI-EKYGVMSVPALVI--NGKVVFVG 63 (76)
T ss_dssp EEEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEETT-----THHHH-HHTT-SSSSEEEE--TTEEEEES
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc-----CHHHH-HHcCCCCCCEEEE--CCEEEEEe
Confidence 36674 456999986655 556668888888862 12334 4577899999987 57665554
No 116
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=95.10 E-value=0.11 Score=42.51 Aligned_cols=70 Identities=20% Similarity=0.447 Sum_probs=49.0
Q ss_pred CChhhHHHHHHHHHc-----CCceEEEEcCCCCCCCHHHHHhhCC-CCceeEEEeCCCC------------eEeecHHHH
Q 025668 142 ACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGG-KEQFPFLIDPNTG------------VSMYESGDI 203 (249)
Q Consensus 142 ~SPyCrkVR~~L~EL-----gIpye~v~v~kg~~~~re~l~~lnP-~~qVPvLvDpntG------------~~L~ES~aI 203 (249)
.||.|..+-=+|... .|+++.++..+- ..+.+..++. +...|+||-+.+. ..+.+...|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RP---R~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRP---RQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRI 99 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCc---hHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHH
Confidence 499999998888765 456666665542 2333433444 6779999875322 278899999
Q ss_pred HHHHHHHhCCC
Q 025668 204 VNYLFQQYGKG 214 (249)
Q Consensus 204 i~YL~ekY~~~ 214 (249)
+.||.++||-.
T Consensus 100 ~~~La~r~g~p 110 (112)
T PF11287_consen 100 LRYLAERHGFP 110 (112)
T ss_pred HHHHHHHcCCC
Confidence 99999999854
No 117
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=94.23 E-value=0.26 Score=39.82 Aligned_cols=64 Identities=13% Similarity=0.311 Sum_probs=39.4
Q ss_pred CCceEEEEcCCChhhHHHHHHHHHc----CCceEEEEcCCCC---CCC----HHHHHhh---CCCCceeEEEeCCCCe
Q 025668 132 PTRLQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGS---IRH----REMVRRL---GGKEQFPFLIDPNTGV 195 (249)
Q Consensus 132 ek~L~LYs~e~SPyCrkVR~~L~EL----gIpye~v~v~kg~---~~~----re~l~~l---nP~~qVPvLvDpntG~ 195 (249)
+.-+..|+.++||+|+.+.-.|.++ ++++-.++++... ... .++..+. .+-..+|.++.=.+|.
T Consensus 24 ~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk 101 (122)
T TIGR01295 24 ETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGK 101 (122)
T ss_pred CcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCe
Confidence 3347778889999999987777665 4667777877432 111 2333221 1234499885544663
No 118
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=94.02 E-value=0.68 Score=34.05 Aligned_cols=72 Identities=15% Similarity=0.396 Sum_probs=46.6
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc----C--CceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEe------ecHH
Q 025668 134 RLQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM------YESG 201 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL----g--Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L------~ES~ 201 (249)
-+.+|..++|+.|+..+-.|.++ + +.+-.++++. .++.. +...-..+|.++.-.+|..+ .+..
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~----~~~l~-~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 94 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDE----NKELC-KKYGVKSVPTIIFFKNGKEVKRYNGPRNAE 94 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTT----SHHHH-HHTTCSSSSEEEEEETTEEEEEEESSSSHH
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhhc----cchhh-hccCCCCCCEEEEEECCcEEEEEECCCCHH
Confidence 45666778999999999887666 2 3344455542 35544 45668889988433355332 3567
Q ss_pred HHHHHHHHH
Q 025668 202 DIVNYLFQQ 210 (249)
Q Consensus 202 aIi~YL~ek 210 (249)
.|.++|+++
T Consensus 95 ~l~~~i~~~ 103 (103)
T PF00085_consen 95 SLIEFIEKH 103 (103)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcC
Confidence 888888763
No 119
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=93.29 E-value=0.086 Score=41.72 Aligned_cols=53 Identities=26% Similarity=0.515 Sum_probs=36.7
Q ss_pred CceEEE-EcCCChhhHHHHHHHHHcC-----CceEEEEcCCCCCCCHHHHHhhCCCCceeEEEe
Q 025668 133 TRLQLF-EFEACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (249)
Q Consensus 133 k~L~LY-s~e~SPyCrkVR~~L~ELg-----Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLvD 190 (249)
..+.+| +-+|||+|+.++.+|+++. +.+..++++. .++. .+..+-..||.++.
T Consensus 23 ~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~----~~~l-~~~~~v~~vPt~~i 81 (113)
T cd02975 23 VDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE----DKEK-AEKYGVERVPTTIF 81 (113)
T ss_pred eEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc----CHHH-HHHcCCCcCCEEEE
Confidence 346666 5579999999999998775 3455555543 3444 45677889998854
No 120
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=93.28 E-value=0.48 Score=33.27 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=39.1
Q ss_pred ceEEEEcCCChhhHHHHHHHHH-----cCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCe
Q 025668 134 RLQLFEFEACPFCRRVREAITE-----LDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 195 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~E-----LgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~ 195 (249)
-+.+|+.++|++|+.+...+.+ .++.+..+++... .+.. +..+-..+|+++--+.|.
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~-~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN----PELA-EEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC----hhHH-HhcCcccccEEEEEECCE
Confidence 4667777899999999999988 5677777776542 3344 345567799874322454
No 121
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=93.03 E-value=0.83 Score=34.42 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=36.7
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc------CCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeE
Q 025668 134 RLQLFEFEACPFCRRVREAITEL------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 196 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL------gIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~ 196 (249)
-+.+|..++|+.|+.....|+++ ++.+..++++. .++.. +...-..+|+++.-++|..
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~----~~~l~-~~~~v~~vPt~~i~~~g~~ 79 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE----DQEIA-EAAGIMGTPTVQFFKDKEL 79 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC----CHHHH-HHCCCeeccEEEEEECCeE
Confidence 46677778999999998888773 23444445432 34444 3455678998743235643
No 122
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=92.73 E-value=0.22 Score=43.55 Aligned_cols=70 Identities=13% Similarity=0.323 Sum_probs=43.8
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcC-----CceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEee---cHHHHHH
Q 025668 134 RLQLFEFEACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY---ESGDIVN 205 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELg-----Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~---ES~aIi~ 205 (249)
.+.+|.-++||+|..+..+++++- +.+..++++. .++.. +..+-..||.++.-.+|..+. .-.++.+
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~----~~~~~-~~~~V~~vPtl~i~~~~~~~~G~~~~~~l~~ 210 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANE----NPDLA-EKYGVMSVPKIVINKGVEEFVGAYPEEQFLE 210 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCC----CHHHH-HHhCCccCCEEEEecCCEEEECCCCHHHHHH
Confidence 567788899999999999888763 3444344332 34444 456778899986533454222 2344556
Q ss_pred HHH
Q 025668 206 YLF 208 (249)
Q Consensus 206 YL~ 208 (249)
+|.
T Consensus 211 ~l~ 213 (215)
T TIGR02187 211 YIL 213 (215)
T ss_pred HHH
Confidence 554
No 123
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=92.57 E-value=0.2 Score=39.47 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=25.1
Q ss_pred EEcCCChhhHHHHHHHHHcCCceEEEEcCCCC
Q 025668 138 FEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (249)
Q Consensus 138 Ys~e~SPyCrkVR~~L~ELgIpye~v~v~kg~ 169 (249)
|+.+.|.-|++++.+|++.|++|+++++.+..
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p 32 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEP 32 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS-
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCC
Confidence 78899999999999999999999999997643
No 124
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.23 E-value=0.49 Score=43.03 Aligned_cols=75 Identities=15% Similarity=0.204 Sum_probs=58.5
Q ss_pred CCCceEEEE-----cCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHH
Q 025668 131 SPTRLQLFE-----FEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (249)
Q Consensus 131 pek~L~LYs-----~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~ 205 (249)
..+++.||- ++.|.|++.+.-+|.+.|++|...+|-.++ .-|+-+++.+-+-++|-|.. +|..+...+.|.+
T Consensus 137 ~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~De-elRqglK~fSdWPTfPQlyI--~GEFiGGlDIl~~ 213 (227)
T KOG0911|consen 137 KAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDE-ELRQGLKEFSDWPTFPQLYV--KGEFIGGLDILKE 213 (227)
T ss_pred ccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCH-HHHHHhhhhcCCCCccceeE--CCEeccCcHHHHH
Confidence 456889985 457999999999999999999999997653 45667778899999999966 5776666655555
Q ss_pred HHH
Q 025668 206 YLF 208 (249)
Q Consensus 206 YL~ 208 (249)
.+.
T Consensus 214 m~~ 216 (227)
T KOG0911|consen 214 MHE 216 (227)
T ss_pred Hhh
Confidence 443
No 125
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=92.04 E-value=0.65 Score=46.34 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=42.0
Q ss_pred ceEEEEcCCChhhHHHHHHHHH----c-CCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeec
Q 025668 134 RLQLFEFEACPFCRRVREAITE----L-DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE 199 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~E----L-gIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~E 199 (249)
.+++|..++||||..+..++.+ + +|.++.+++.. .++.. +.++-..||.++. +|..+++
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~----~~~~~-~~~~v~~vP~~~i--~~~~~~~ 542 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH----FPDLK-DEYGIMSVPAIVV--DDQQVYF 542 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc----cHHHH-HhCCceecCEEEE--CCEEEEe
Confidence 4788888999999887775544 4 68888888653 35554 4577889999987 4544444
No 126
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=90.98 E-value=1.8 Score=31.60 Aligned_cols=71 Identities=14% Similarity=0.217 Sum_probs=40.7
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc----C--CceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEe------ecHH
Q 025668 134 RLQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM------YESG 201 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL----g--Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L------~ES~ 201 (249)
-+..|..++|++|+.+...|.++ + +.+-.++++. .++.. +..+-..+|.++.-++|..+ ....
T Consensus 17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~----~~~~~-~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~ 91 (101)
T TIGR01068 17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE----NPDIA-AKYGIRSIPTLLLFKNGKEVDRSVGALPKA 91 (101)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC----CHHHH-HHcCCCcCCEEEEEeCCcEeeeecCCCCHH
Confidence 34455567899999998777665 2 4444445443 23333 44566789987432345321 1245
Q ss_pred HHHHHHHH
Q 025668 202 DIVNYLFQ 209 (249)
Q Consensus 202 aIi~YL~e 209 (249)
+|..+|.+
T Consensus 92 ~l~~~l~~ 99 (101)
T TIGR01068 92 ALKQLINK 99 (101)
T ss_pred HHHHHHHh
Confidence 66666654
No 127
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=90.75 E-value=0.2 Score=49.29 Aligned_cols=73 Identities=12% Similarity=0.155 Sum_probs=50.5
Q ss_pred CceEEEEcCCChhhHHHHHHHHHcC-----CceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeec----HHHH
Q 025668 133 TRLQLFEFEACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE----SGDI 203 (249)
Q Consensus 133 k~L~LYs~e~SPyCrkVR~~L~ELg-----Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~E----S~aI 203 (249)
-.+++|..+.||||..|+.++.++- |..+.++. ...++.. +...-..||.++. +|..+++ -.+|
T Consensus 118 ~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~----~~~~~~~-~~~~v~~VP~~~i--~~~~~~~g~~~~~~~ 190 (517)
T PRK15317 118 FHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDG----ALFQDEV-EARNIMAVPTVFL--NGEEFGQGRMTLEEI 190 (517)
T ss_pred eEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEc----hhCHhHH-HhcCCcccCEEEE--CCcEEEecCCCHHHH
Confidence 3588999999999999999887774 44444432 2356655 4566789999976 3555555 3467
Q ss_pred HHHHHHHhC
Q 025668 204 VNYLFQQYG 212 (249)
Q Consensus 204 i~YL~ekY~ 212 (249)
++.|.+..+
T Consensus 191 ~~~~~~~~~ 199 (517)
T PRK15317 191 LAKLDTGAA 199 (517)
T ss_pred HHHHhcccc
Confidence 777776544
No 128
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=90.44 E-value=0.72 Score=35.10 Aligned_cols=25 Identities=16% Similarity=0.567 Sum_probs=17.3
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHH
Q 025668 131 SPTRLQLFEFEACPFCRRVREAITE 155 (249)
Q Consensus 131 pek~L~LYs~e~SPyCrkVR~~L~E 155 (249)
+...+.+|..++||||+++...+.+
T Consensus 5 ~k~~v~~F~~~~C~~C~~~~~~~~~ 29 (112)
T PF13098_consen 5 GKPIVVVFTDPWCPYCKKLEKELFP 29 (112)
T ss_dssp SSEEEEEEE-TT-HHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHH
Confidence 3345677778899999999777764
No 129
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=89.95 E-value=0.22 Score=49.00 Aligned_cols=73 Identities=15% Similarity=0.263 Sum_probs=49.2
Q ss_pred CceEEEEcCCChhhHHHHHHHHHcC-----CceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeec----HHHH
Q 025668 133 TRLQLFEFEACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE----SGDI 203 (249)
Q Consensus 133 k~L~LYs~e~SPyCrkVR~~L~ELg-----Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~E----S~aI 203 (249)
-.+++|..+.||||..|+.++.++- |..+.++. ...++.. +...-..||.++. +|..+++ -.++
T Consensus 119 ~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~----~~~~~~~-~~~~v~~VP~~~i--~~~~~~~g~~~~~~~ 191 (515)
T TIGR03140 119 LHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDG----ALFQDEV-EALGIQGVPAVFL--NGEEFHNGRMDLAEL 191 (515)
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEc----hhCHHHH-HhcCCcccCEEEE--CCcEEEecCCCHHHH
Confidence 3588999999999999999988874 44444332 2356665 4566779999976 3555555 3456
Q ss_pred HHHHHHHhC
Q 025668 204 VNYLFQQYG 212 (249)
Q Consensus 204 i~YL~ekY~ 212 (249)
++.|.+.++
T Consensus 192 ~~~l~~~~~ 200 (515)
T TIGR03140 192 LEKLEETAG 200 (515)
T ss_pred HHHHhhccC
Confidence 666665533
No 130
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=89.23 E-value=2.1 Score=33.60 Aligned_cols=21 Identities=29% Similarity=0.808 Sum_probs=15.6
Q ss_pred CceEEEEcCCChhhHHHHHHH
Q 025668 133 TRLQLFEFEACPFCRRVREAI 153 (249)
Q Consensus 133 k~L~LYs~e~SPyCrkVR~~L 153 (249)
..+..|+.++||+|++....+
T Consensus 16 ~vlv~f~a~wC~~C~~~~~~~ 36 (125)
T cd02951 16 PLLLLFSQPGCPYCDKLKRDY 36 (125)
T ss_pred cEEEEEeCCCCHHHHHHHHHh
Confidence 356677778999999876543
No 131
>PRK09381 trxA thioredoxin; Provisional
Probab=89.01 E-value=3.7 Score=31.18 Aligned_cols=71 Identities=20% Similarity=0.242 Sum_probs=40.4
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc----C--CceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEee------cHH
Q 025668 134 RLQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY------ESG 201 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL----g--Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~------ES~ 201 (249)
-+..|..++||.|+...-.++++ + +.+-.++++.. +... +..+-..+|.++.-++|..+. ...
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~----~~~~-~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~ 98 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN----PGTA-PKYGIRGIPTLLLFKNGEVAATKVGALSKG 98 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC----hhHH-HhCCCCcCCEEEEEeCCeEEEEecCCCCHH
Confidence 34555667999999888777654 2 33334455432 3333 345677899874323565332 244
Q ss_pred HHHHHHHH
Q 025668 202 DIVNYLFQ 209 (249)
Q Consensus 202 aIi~YL~e 209 (249)
+|..+|++
T Consensus 99 ~l~~~i~~ 106 (109)
T PRK09381 99 QLKEFLDA 106 (109)
T ss_pred HHHHHHHH
Confidence 45555554
No 132
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=88.90 E-value=0.81 Score=34.68 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=32.5
Q ss_pred ceEEEEcCCChhhHHHHHHH-------HHc--CCceEEEEcCCCCCCCHHHHHhhCCCCceeEEE
Q 025668 134 RLQLFEFEACPFCRRVREAI-------TEL--DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L-------~EL--gIpye~v~v~kg~~~~re~l~~lnP~~qVPvLv 189 (249)
-+..|+.++|++|+.....+ .++ ++.+..++++..+....++. +..+-..+|+++
T Consensus 14 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-~~~~i~~~Pti~ 77 (104)
T cd02953 14 VFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALL-KRFGVFGPPTYL 77 (104)
T ss_pred EEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHH-HHcCCCCCCEEE
Confidence 46677788999999876443 122 34444455544322233444 456677899773
No 133
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=88.56 E-value=5.5 Score=32.72 Aligned_cols=79 Identities=13% Similarity=0.188 Sum_probs=46.3
Q ss_pred eEEEEcCCChhhHHHHHHHHHcC------CceEEEEcCCCCCCCHHHHHhhCCCCceeEEE--eCCCCeEee------cH
Q 025668 135 LQLFEFEACPFCRRVREAITELD------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI--DPNTGVSMY------ES 200 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELg------Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLv--DpntG~~L~------ES 200 (249)
+..|.-+||++|+...-.|.++- +.+..++++.. ...+.. +..+-..+|.++ ++ +|..+. .-
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~--~~~~~~-~~~~V~~iPt~v~~~~-~G~~v~~~~G~~~~ 99 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNP--KWLPEI-DRYRVDGIPHFVFLDR-EGNEEGQSIGLQPK 99 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCc--ccHHHH-HHcCCCCCCEEEEECC-CCCEEEEEeCCCCH
Confidence 44455679999998888776652 34444555432 223444 345677899773 33 464332 24
Q ss_pred HHHHHHHHHHhCCCCCC
Q 025668 201 GDIVNYLFQQYGKGRSP 217 (249)
Q Consensus 201 ~aIi~YL~ekY~~~~~P 217 (249)
.+|.+.|++.......|
T Consensus 100 ~~l~~~l~~l~~~~~~~ 116 (142)
T cd02950 100 QVLAQNLDALVAGEPLP 116 (142)
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 55777777666555444
No 134
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.86 E-value=2.7 Score=39.53 Aligned_cols=78 Identities=26% Similarity=0.316 Sum_probs=52.4
Q ss_pred CceEEEEcCCChhhHHHHHHHHHcCCc----eEEE-E-cCCCCCCC--------------------------HHHHH---
Q 025668 133 TRLQLFEFEACPFCRRVREAITELDLS----VEVF-P-CPKGSIRH--------------------------REMVR--- 177 (249)
Q Consensus 133 k~L~LYs~e~SPyCrkVR~~L~ELgIp----ye~v-~-v~kg~~~~--------------------------re~l~--- 177 (249)
..+.||..-.||++.+..+++..+|++ +..+ + .+...|.. ++...
T Consensus 36 gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 36 GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 479999988999999999999999975 3332 3 11111211 11111
Q ss_pred -hhCCCCceeEEEeCCCC-eEeecHHHHHHHHHHH
Q 025668 178 -RLGGKEQFPFLIDPNTG-VSMYESGDIVNYLFQQ 210 (249)
Q Consensus 178 -~lnP~~qVPvLvDpntG-~~L~ES~aIi~YL~ek 210 (249)
...+..+||||-|..+. ++=-||.+||+.+...
T Consensus 116 p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~ 150 (319)
T KOG2903|consen 116 PNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSA 150 (319)
T ss_pred CCCCceEEEEEEEccccceeecCchHHHHHHHhhh
Confidence 12346889999986443 4557999999999933
No 135
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=87.71 E-value=0.36 Score=40.06 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=17.9
Q ss_pred hCCCCceeEEEeCCCCeEeecHHHHHHHHHHHhCCCC
Q 025668 179 LGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKGR 215 (249)
Q Consensus 179 lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY~~~~ 215 (249)
++....-|-|.+..+|+.++|..||++||..-|....
T Consensus 30 v~ed~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~~e 66 (122)
T PF09635_consen 30 VNEDESGPLLKDKKSGFELFEPNAIVRYLANDFEGQE 66 (122)
T ss_dssp E-SS--S--EEE-S--S----HHHHHHHHTT--TTTT
T ss_pred eCCccccceeeecCCceEEecccHHHHHHHhhcCCcc
Confidence 3444456889777789999999999999998886543
No 136
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=87.56 E-value=2.7 Score=32.08 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=35.1
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc------------CCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCe
Q 025668 134 RLQLFEFEACPFCRRVREAITEL------------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 195 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL------------gIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~ 195 (249)
-+..|.-++|++|+.....++++ .+.+-.++++.. ++.. +..+-..+|.++.-.+|.
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~----~~l~-~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE----SDIA-DRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC----HHHH-HhCCCCcCCEEEEEeCCc
Confidence 35666778999999988777543 133444555432 4444 456678899884322453
No 137
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=87.45 E-value=3.1 Score=37.44 Aligned_cols=78 Identities=17% Similarity=0.257 Sum_probs=46.5
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCC----ceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEe------ecHHHH
Q 025668 134 RLQLFEFEACPFCRRVREAITELDL----SVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM------YESGDI 203 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgI----pye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L------~ES~aI 203 (249)
-+..|+-+|||.|+...-.++++-- .+.+..++-. ..++.. +..+-..+|.++.=++|..+ ....+|
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~--~~~~l~-~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L 131 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDAT--RALNLA-KRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKL 131 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCc--ccHHHH-HHcCCCcCCEEEEEECCEEEEeeCCCCCHHHH
Confidence 3566667899999988777766521 1223233221 224433 45667789977422245432 246788
Q ss_pred HHHHHHHhCCC
Q 025668 204 VNYLFQQYGKG 214 (249)
Q Consensus 204 i~YL~ekY~~~ 214 (249)
.+|+.+.|...
T Consensus 132 ~~fi~~~~~~~ 142 (224)
T PTZ00443 132 AAFALGDFKKA 142 (224)
T ss_pred HHHHHHHHHhh
Confidence 99999888643
No 138
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=87.08 E-value=2.7 Score=33.44 Aligned_cols=70 Identities=13% Similarity=0.094 Sum_probs=42.2
Q ss_pred ceEEEEcCCC------hhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhC---------CCCceeEEEeCCCCeEee
Q 025668 134 RLQLFEFEAC------PFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG---------GKEQFPFLIDPNTGVSMY 198 (249)
Q Consensus 134 ~L~LYs~e~S------PyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~ln---------P~~qVPvLvDpntG~~L~ 198 (249)
.|++|....+ -.+++|..+|+-++|+|+.++|..+ ...++++++.. +..-.|.|.. ++..+.
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~-e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~--~~~Y~G 78 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMD-EEARQWMRENAGPEEKDPGNGKPLPPQIFN--GDEYCG 78 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT--HHHHHHHHHHT--CCCS-TSTT--S-EEEE--TTEEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCC-HHHHHHHHHhccccccCCCCCCCCCCEEEe--CCEEEe
Confidence 4677775433 3578999999999999999999874 34556665554 2333467765 566666
Q ss_pred cHHHHHHH
Q 025668 199 ESGDIVNY 206 (249)
Q Consensus 199 ES~aIi~Y 206 (249)
+=.++-+.
T Consensus 79 dye~f~ea 86 (99)
T PF04908_consen 79 DYEDFEEA 86 (99)
T ss_dssp EHHHHHHH
T ss_pred eHHHHHHH
Confidence 55555443
No 139
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=86.66 E-value=14 Score=32.36 Aligned_cols=33 Identities=21% Similarity=0.514 Sum_probs=22.6
Q ss_pred eEEEEcCCChhhHHHHHHHH----HcCCceEEEEcCC
Q 025668 135 LQLFEFEACPFCRRVREAIT----ELDLSVEVFPCPK 167 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~----ELgIpye~v~v~k 167 (249)
+..|.-.+||+|++..-.|. +.|+++..+.++.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~ 109 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDG 109 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCC
Confidence 66677779999999855444 4476666666653
No 140
>PTZ00051 thioredoxin; Provisional
Probab=86.55 E-value=0.99 Score=33.48 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=36.7
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc-----CCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCe
Q 025668 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 195 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL-----gIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~ 195 (249)
-+..|+.++|+.|+.+...|..+ ++.+-.++++. ..+.. +..+-..+|.++.-.+|.
T Consensus 21 vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~----~~~~~-~~~~v~~~Pt~~~~~~g~ 82 (98)
T PTZ00051 21 VIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE----LSEVA-EKENITSMPTFKVFKNGS 82 (98)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc----hHHHH-HHCCCceeeEEEEEeCCe
Confidence 45666778999999998888775 44444455542 23444 456678899874323564
No 141
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=86.47 E-value=1.1 Score=33.17 Aligned_cols=60 Identities=15% Similarity=0.096 Sum_probs=37.1
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcC----CceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeE
Q 025668 134 RLQLFEFEACPFCRRVREAITELD----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 196 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELg----Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~ 196 (249)
-+..|.-++|+.|+++...|+++. ..+.+..++.. ...+... ..+-..+|+++.-++|..
T Consensus 17 v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~--~~~~~~~-~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 17 LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE--ELPEISE-KFEITAVPTFVFFRNGTI 80 (97)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc--cCHHHHH-hcCCccccEEEEEECCEE
Confidence 346666789999999988887653 23455555432 2344443 455677997743235643
No 142
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=85.70 E-value=2.7 Score=33.47 Aligned_cols=58 Identities=16% Similarity=0.292 Sum_probs=34.5
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc------CCceEEEEcCCCCCCCHHHHHhhCCCC-ceeEEE--eCCCCe
Q 025668 134 RLQLFEFEACPFCRRVREAITEL------DLSVEVFPCPKGSIRHREMVRRLGGKE-QFPFLI--DPNTGV 195 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL------gIpye~v~v~kg~~~~re~l~~lnP~~-qVPvLv--DpntG~ 195 (249)
-+..|+-++|++|+.....+.+. +..|..++++.......+ +.+..+ .+|.++ ++ +|.
T Consensus 22 VlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~---~~~~~g~~vPt~~f~~~-~Gk 88 (117)
T cd02959 22 LMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDE---EFSPDGGYIPRILFLDP-SGD 88 (117)
T ss_pred EEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhh---hcccCCCccceEEEECC-CCC
Confidence 34556678999999987777663 345666777654322112 233333 499774 34 565
No 143
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=85.55 E-value=1.3 Score=34.56 Aligned_cols=71 Identities=14% Similarity=0.290 Sum_probs=40.0
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc-------CCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEe------ecH
Q 025668 134 RLQLFEFEACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM------YES 200 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL-------gIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L------~ES 200 (249)
-+..|..+||+.|+.....+.++ ++.+-.++++.. ++.. +..+-..+|.++.-++|..+ ...
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~----~~l~-~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~ 101 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE----RRLA-RKLGAHSVPAIVGIINGQVTFYHDSSFTK 101 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc----HHHH-HHcCCccCCEEEEEECCEEEEEecCCCCH
Confidence 45566678999998776655444 244444455432 3333 45667889988532356332 124
Q ss_pred HHHHHHHHH
Q 025668 201 GDIVNYLFQ 209 (249)
Q Consensus 201 ~aIi~YL~e 209 (249)
..|.++|.+
T Consensus 102 ~~l~~~i~~ 110 (111)
T cd02963 102 QHVVDFVRK 110 (111)
T ss_pred HHHHHHHhc
Confidence 556666653
No 144
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=85.41 E-value=3.3 Score=33.76 Aligned_cols=67 Identities=12% Similarity=0.330 Sum_probs=38.0
Q ss_pred CceEE-EEcCCChhhHHHH-------HHHHHcCCceEEEEcCCCCCCC-H----HHHHhhCCCCceeEE--EeCCCCeEe
Q 025668 133 TRLQL-FEFEACPFCRRVR-------EAITELDLSVEVFPCPKGSIRH-R----EMVRRLGGKEQFPFL--IDPNTGVSM 197 (249)
Q Consensus 133 k~L~L-Ys~e~SPyCrkVR-------~~L~ELgIpye~v~v~kg~~~~-r----e~l~~lnP~~qVPvL--vDpntG~~L 197 (249)
|++-| ++..+|++|++.. .+...++-.|..+.++...... . +.....++...+|++ +++ +|..+
T Consensus 16 KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~-~G~~~ 94 (124)
T cd02955 16 KPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTP-DLKPF 94 (124)
T ss_pred CeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECC-CCCEE
Confidence 34444 5667999999874 2333444467777665432110 1 111123456779977 455 68877
Q ss_pred ecH
Q 025668 198 YES 200 (249)
Q Consensus 198 ~ES 200 (249)
+.+
T Consensus 95 ~~~ 97 (124)
T cd02955 95 FGG 97 (124)
T ss_pred eee
Confidence 766
No 145
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=85.28 E-value=1.3 Score=39.71 Aligned_cols=38 Identities=16% Similarity=0.552 Sum_probs=27.8
Q ss_pred CCCCceEEEEcCCChhhHHHHHHHHHc---CCceEEEEcCC
Q 025668 130 DSPTRLQLFEFEACPFCRRVREAITEL---DLSVEVFPCPK 167 (249)
Q Consensus 130 ~pek~L~LYs~e~SPyCrkVR~~L~EL---gIpye~v~v~k 167 (249)
.+...+.+|+.+.||||++...-|.++ |+.+.+..++.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~ 146 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPR 146 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccC
Confidence 455578888889999999999888876 35555544443
No 146
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=85.18 E-value=3.4 Score=36.04 Aligned_cols=78 Identities=19% Similarity=0.350 Sum_probs=49.4
Q ss_pred CCceEEEEc---CCChhhHHHHHHHHHcC-----CceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEe----ec
Q 025668 132 PTRLQLFEF---EACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM----YE 199 (249)
Q Consensus 132 ek~L~LYs~---e~SPyCrkVR~~L~ELg-----Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L----~E 199 (249)
...+.+|.. +|||.|+.+.-+|+++. +.+..++++.. ..++.. +...-..+|.++.=++|..+ ..
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~--~~~~l~-~~~~V~~~Pt~~~f~~g~~~~~~~~G 96 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP--EDKEEA-EKYGVERVPTTIILEEGKDGGIRYTG 96 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc--ccHHHH-HHcCCCccCEEEEEeCCeeeEEEEee
Confidence 345778877 89999999999998873 33445555532 234443 56778899988542244322 12
Q ss_pred ---HHHHHHHHHHHhC
Q 025668 200 ---SGDIVNYLFQQYG 212 (249)
Q Consensus 200 ---S~aIi~YL~ekY~ 212 (249)
-..+..+|...++
T Consensus 97 ~~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 97 IPAGYEFAALIEDIVR 112 (215)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3456677776654
No 147
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.68 E-value=4.6 Score=38.23 Aligned_cols=80 Identities=23% Similarity=0.303 Sum_probs=52.9
Q ss_pred CceEEEEcCCChhhHHHHHHHHHcCCc----eEEEEc--CCCCCC--------------CHHHHH--------hhCCCCc
Q 025668 133 TRLQLFEFEACPFCRRVREAITELDLS----VEVFPC--PKGSIR--------------HREMVR--------RLGGKEQ 184 (249)
Q Consensus 133 k~L~LYs~e~SPyCrkVR~~L~ELgIp----ye~v~v--~kg~~~--------------~re~l~--------~lnP~~q 184 (249)
..+.||..-+||++++..++=..||++ +.++.- +...|. .-+.+. ...+..+
T Consensus 50 GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvT 129 (324)
T COG0435 50 GRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVT 129 (324)
T ss_pred CeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCcee
Confidence 379999999999999998888878764 333221 111110 111121 2356789
Q ss_pred eeEEEeCCCC-eEeecHHHHHHHHHHHhC
Q 025668 185 FPFLIDPNTG-VSMYESGDIVNYLFQQYG 212 (249)
Q Consensus 185 VPvLvDpntG-~~L~ES~aIi~YL~ekY~ 212 (249)
||+|.|..+. .+=-||.+|+.-|...|.
T Consensus 130 VPVLwDk~~~tIVnNES~eIirm~N~aFd 158 (324)
T COG0435 130 VPVLWDKKTQTIVNNESAEIIRMFNSAFD 158 (324)
T ss_pred EEEEEecCCCeeecCCcHHHHHHHHHHHH
Confidence 9999996544 455799999999876654
No 148
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=84.32 E-value=1.9 Score=31.66 Aligned_cols=50 Identities=16% Similarity=0.312 Sum_probs=31.7
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcC--------CceEEEEcCCCCCCCHHHHHhhCCCCceeEE
Q 025668 134 RLQLFEFEACPFCRRVREAITELD--------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFL 188 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELg--------Ipye~v~v~kg~~~~re~l~~lnP~~qVPvL 188 (249)
-+.+|..++|+.|+.....+.++. +.+..+++++ .++.. +..+-..+|.+
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~-~~~~i~~~P~~ 73 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA----EKDLA-SRFGVSGFPTI 73 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc----hHHHH-HhCCCCcCCEE
Confidence 477788889999998777665542 2233334432 23433 45667889977
No 149
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=84.08 E-value=4.2 Score=31.35 Aligned_cols=54 Identities=24% Similarity=0.480 Sum_probs=34.2
Q ss_pred CceEEEEcCCChhhHHHHHHHHHcC-------CceEEEEcCCCCCCCHHHHHhhCCCCceeEEE
Q 025668 133 TRLQLFEFEACPFCRRVREAITELD-------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (249)
Q Consensus 133 k~L~LYs~e~SPyCrkVR~~L~ELg-------Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLv 189 (249)
.-+..|..++||.|+...-.+.++. +.+-.++++.. ..+...+..+-..+|.++
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~---~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE---QREFAKEELQLKSFPTIL 83 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc---chhhHHhhcCCCcCCEEE
Confidence 3577778889999998887776652 33444555541 123333346677899774
No 150
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=84.05 E-value=1.2 Score=35.26 Aligned_cols=60 Identities=12% Similarity=0.038 Sum_probs=38.2
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc-----CCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEee
Q 025668 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY 198 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL-----gIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ 198 (249)
-+..|..++|+.|+.+...|+++ ++.+-.+++++ .++ +.+..+-..+|+++.=.+|..+.
T Consensus 25 vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~----~~~-l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 25 VVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK----APF-LVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc----CHH-HHHHCCCccCCEEEEEECCEEEE
Confidence 45566668999999999888775 34443344433 333 33556788899885433575443
No 151
>PHA02278 thioredoxin-like protein
Probab=83.64 E-value=6.6 Score=30.81 Aligned_cols=62 Identities=13% Similarity=0.239 Sum_probs=37.8
Q ss_pred eEEEEcCCChhhHHHHHHHHHcC------CceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEe
Q 025668 135 LQLFEFEACPFCRRVREAITELD------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 197 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELg------Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L 197 (249)
+.-|+-+||+.|+...-+++++. +++..++++......++ +.+...-..+|+++.=.+|..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~-l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREK-AVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHH-HHHHCCCccccEEEEEECCEEE
Confidence 44445679999998887776651 34555677654222234 3345667789988543357544
No 152
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.58 E-value=2.4 Score=38.64 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=51.0
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHHHh
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~ekY 211 (249)
.+-|+.+. -|..|..+|...++||.++-.+.. |+ +.|.|+||.|.. +...+.|=..|+.+++.+-
T Consensus 28 QiLl~d~a---scLAVqtfLrMcnLPf~v~~~~Na-----ef---mSP~G~vPllr~--g~~~~aef~pIV~fVeak~ 92 (257)
T KOG3027|consen 28 QILLPDNA---SCLAVQTFLRMCNLPFNVRQRANA-----EF---MSPGGKVPLLRI--GKTLFAEFEPIVDFVEAKG 92 (257)
T ss_pred ccccccch---hHHHHHHHHHHcCCCceeeecCCc-----cc---cCCCCCCceeee--cchhhhhhhHHHHHHHHhc
Confidence 45555543 589999999999999998876532 33 589999999977 3577889999999998764
No 153
>PRK10996 thioredoxin 2; Provisional
Probab=83.53 E-value=10 Score=30.90 Aligned_cols=74 Identities=14% Similarity=0.131 Sum_probs=42.8
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc----CCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEe------ecHHHH
Q 025668 134 RLQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM------YESGDI 203 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL----gIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L------~ES~aI 203 (249)
-+..|+-+||+.|+.....|.++ +-.+.+..++.+ ..++.. +..+-..+|.++.-.+|..+ .....|
T Consensus 55 vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~--~~~~l~-~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~l 131 (139)
T PRK10996 55 VVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE--AERELS-ARFRIRSIPTIMIFKNGQVVDMLNGAVPKAPF 131 (139)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC--CCHHHH-HhcCCCccCEEEEEECCEEEEEEcCCCCHHHH
Confidence 45666778999999877666554 323444444332 234444 45667889988432356433 224556
Q ss_pred HHHHHHH
Q 025668 204 VNYLFQQ 210 (249)
Q Consensus 204 i~YL~ek 210 (249)
.++|.+.
T Consensus 132 ~~~l~~~ 138 (139)
T PRK10996 132 DSWLNEA 138 (139)
T ss_pred HHHHHHh
Confidence 6776653
No 154
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=83.14 E-value=7.4 Score=28.70 Aligned_cols=60 Identities=18% Similarity=0.314 Sum_probs=34.7
Q ss_pred CceEEEEcCCChhhHHHHHHHHHc----C----CceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCe
Q 025668 133 TRLQLFEFEACPFCRRVREAITEL----D----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 195 (249)
Q Consensus 133 k~L~LYs~e~SPyCrkVR~~L~EL----g----Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~ 195 (249)
.-+.+|.-++||+|+.....+.++ . +.+-.+++... ...+.. +..+-..+|.++.-.+|.
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~-~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP--EHDALK-EEYNVKGFPTFKYFENGK 86 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC--ccHHHH-HhCCCccccEEEEEeCCC
Confidence 346777778999999886555433 2 22333455432 244444 345567899884323454
No 155
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=82.73 E-value=3.1 Score=37.69 Aligned_cols=36 Identities=14% Similarity=0.434 Sum_probs=25.4
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHHc---C-CceEEEEcC
Q 025668 131 SPTRLQLFEFEACPFCRRVREAITEL---D-LSVEVFPCP 166 (249)
Q Consensus 131 pek~L~LYs~e~SPyCrkVR~~L~EL---g-Ipye~v~v~ 166 (249)
.+..+.+|+...||||++....+.++ | |.+.+++++
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~~ 156 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILVG 156 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEecc
Confidence 34467788888999999998877642 3 666656543
No 156
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=82.52 E-value=5.6 Score=32.41 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=32.8
Q ss_pred CCChhhHHHHHHHHHc----C--CceEEEEcCCCC-C--CCHHHHHhhCCCC-ceeEEEeCCCCeEeecHH
Q 025668 141 EACPFCRRVREAITEL----D--LSVEVFPCPKGS-I--RHREMVRRLGGKE-QFPFLIDPNTGVSMYESG 201 (249)
Q Consensus 141 e~SPyCrkVR~~L~EL----g--Ipye~v~v~kg~-~--~~re~l~~lnP~~-qVPvLvDpntG~~L~ES~ 201 (249)
.|||.|+.+.-+|+++ . +.+-.+++++.. + ...++. ....-. .+|+++.-.+|..+.|..
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~-~~~~I~~~iPT~~~~~~~~~l~~~~ 107 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFR-TDPKLTTGVPTLLRWKTPQRLVEDE 107 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhH-hccCcccCCCEEEEEcCCceecchh
Confidence 6999999877666554 2 444445554421 1 123433 223233 699885444565555543
No 157
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=81.48 E-value=2.1 Score=32.55 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=30.4
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc-------C--CceEEEEcCCCCCCCHHHHHhhCCCCceeEEEe
Q 025668 134 RLQLFEFEACPFCRRVREAITEL-------D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL-------g--Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLvD 190 (249)
-+..|..++||.|+...-.|.++ + +.+..+++.. .++.. +...-..+|.++.
T Consensus 18 vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~----~~~~~-~~~~I~~~Pt~~l 78 (104)
T cd03000 18 WLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA----YSSIA-SEFGVRGYPTIKL 78 (104)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc----CHhHH-hhcCCccccEEEE
Confidence 45666678999999777666543 2 2222334432 23333 3455677998843
No 158
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=80.72 E-value=3.7 Score=30.71 Aligned_cols=56 Identities=14% Similarity=0.245 Sum_probs=34.6
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcC-------CceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCC
Q 025668 134 RLQLFEFEACPFCRRVREAITELD-------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTG 194 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELg-------Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG 194 (249)
.+..|.-++||.|+...-.+.++. +.+-.++++. .++.. +...-..+|.++.-.+|
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~----~~~~~-~~~~i~~~Pt~~~~~~g 81 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ----EPGLS-GRFFVTALPTIYHAKDG 81 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC----CHhHH-HHcCCcccCEEEEeCCC
Confidence 577777889999998887776552 3333344443 23333 44567789988432345
No 159
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=80.66 E-value=3.7 Score=35.06 Aligned_cols=37 Identities=24% Similarity=0.688 Sum_probs=27.3
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHH--cCCceEEEEcCC
Q 025668 131 SPTRLQLFEFEACPFCRRVREAITE--LDLSVEVFPCPK 167 (249)
Q Consensus 131 pek~L~LYs~e~SPyCrkVR~~L~E--LgIpye~v~v~k 167 (249)
.+..+.+|..+.||||++....+.+ .++.+.++.++.
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~ 115 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPI 115 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCc
Confidence 4557888888899999999999985 345555555543
No 160
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=80.45 E-value=9.7 Score=29.10 Aligned_cols=62 Identities=11% Similarity=0.148 Sum_probs=36.0
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc-----CCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEe
Q 025668 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 197 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL-----gIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L 197 (249)
-+..|.-+||+.|+...-.|.++ ++.+-.++++..+ ...++. +...-..+|.++.-.+|..+
T Consensus 18 vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~-~~~~l~-~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 18 VVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEND-STMELC-RREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCCh-HHHHHH-HHcCCCcCCEEEEEeCCeEE
Confidence 34555667999999888877765 3444445544321 112443 45567779977432356543
No 161
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=79.61 E-value=2.5 Score=30.28 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=32.8
Q ss_pred CceEEEEcCCChhhHHHHHHHHHcC------CceEEEEcCCCCCCCHHHHHhhCCCCceeEE
Q 025668 133 TRLQLFEFEACPFCRRVREAITELD------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFL 188 (249)
Q Consensus 133 k~L~LYs~e~SPyCrkVR~~L~ELg------Ipye~v~v~kg~~~~re~l~~lnP~~qVPvL 188 (249)
.-+.+|.-++|++|+.....+.+.- -.+.+..++.. ...+.. +..+-..+|.+
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~~~i~~~Pt~ 75 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT--ANNDLC-SEYGVRGYPTI 75 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc--chHHHH-HhCCCCCCCEE
Confidence 4677777889999999888776541 22333333322 123444 45566789977
No 162
>PF13728 TraF: F plasmid transfer operon protein
Probab=79.06 E-value=11 Score=33.47 Aligned_cols=60 Identities=25% Similarity=0.435 Sum_probs=38.7
Q ss_pred ceEEEEcCCChhhHHHHHHH----HHcCCceEEEEcCCCC-------CCCHHHHHhhCCCCceeEE--EeCCCC
Q 025668 134 RLQLFEFEACPFCRRVREAI----TELDLSVEVFPCPKGS-------IRHREMVRRLGGKEQFPFL--IDPNTG 194 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L----~ELgIpye~v~v~kg~-------~~~re~l~~lnP~~qVPvL--vDpntG 194 (249)
.|.+|.-..||||+.-.-+| .+.|+.+..+.++... ....+..++++ -..+|+| |+++++
T Consensus 123 gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~-v~~~Pal~Lv~~~~~ 195 (215)
T PF13728_consen 123 GLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLG-VKVTPALFLVNPNTK 195 (215)
T ss_pred EEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcC-CCcCCEEEEEECCCC
Confidence 56777777899997765555 4558888888876321 12344444444 4689977 677664
No 163
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=78.47 E-value=4.3 Score=30.99 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=33.4
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc----C---CceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeE
Q 025668 134 RLQLFEFEACPFCRRVREAITEL----D---LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 196 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL----g---Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~ 196 (249)
-+..|+-+||+.|+....+|.++ + +.+..++++ ..+.. +...-..+|+++.-.+|..
T Consensus 20 vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-----~~~~~-~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 20 TVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-----TIDTL-KRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred EEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-----CHHHH-HHcCCCcCcEEEEEECCEE
Confidence 34556677999999888777654 2 222333433 23444 4566788997733225643
No 164
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=78.31 E-value=15 Score=29.83 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=13.6
Q ss_pred eEEEEcCCChhhHHHHHHHHH
Q 025668 135 LQLFEFEACPFCRRVREAITE 155 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~E 155 (249)
+..|...+||+|+...-.|.+
T Consensus 65 ~l~f~a~~C~~C~~~~~~l~~ 85 (173)
T PRK03147 65 FLNFWGTWCKPCEKEMPYMNE 85 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHH
Confidence 344456789999886555533
No 165
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=77.29 E-value=11 Score=34.64 Aligned_cols=59 Identities=17% Similarity=0.363 Sum_probs=35.2
Q ss_pred eEEEEcCCChhhHHHHHHHHHc----CCceEEEEcCCCCC-------CCHHHHHhhCCCCceeEE--EeCCCC
Q 025668 135 LQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGSI-------RHREMVRRLGGKEQFPFL--IDPNTG 194 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~EL----gIpye~v~v~kg~~-------~~re~l~~lnP~~qVPvL--vDpntG 194 (249)
+..|.-.+||+|+...-.|.++ |+.+..++++.... ...... +..+-..+|.+ +++++|
T Consensus 170 Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la-~~~gV~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 170 LFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQA-QQLKIRTVPAVFLADPDPN 241 (271)
T ss_pred EEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHH-HHcCCCcCCeEEEEECCCC
Confidence 4444556899999877666554 66666666654321 122333 44556789977 665445
No 166
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=77.22 E-value=12 Score=28.07 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=32.2
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcC------CceEEEEcCCCCCCCHHHHHhhCCCCceeEEE
Q 025668 134 RLQLFEFEACPFCRRVREAITELD------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELg------Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLv 189 (249)
-+..|.-++|+.|+...-.++++- +.+-.++++. .++.. +..+-..+|.++
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~----~~~~~-~~~~i~~~Pt~~ 78 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK----YESLC-QQANIRAYPTIR 78 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc----hHHHH-HHcCCCcccEEE
Confidence 455666789999998877776552 3344455543 23433 445677899773
No 167
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=76.82 E-value=6.2 Score=29.09 Aligned_cols=59 Identities=10% Similarity=0.045 Sum_probs=34.0
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCC----ceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCe
Q 025668 134 RLQLFEFEACPFCRRVREAITELDL----SVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 195 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgI----pye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~ 195 (249)
-+..|.-++|+.|+...-.+.++-- .+.+..++-. ..++.. +..+-..+|.++.-.+|.
T Consensus 15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~l~-~~~~i~~~Pt~~~~~~g~ 77 (96)
T cd02956 15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD--AQPQIA-QQFGVQALPTVYLFAAGQ 77 (96)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEecc--CCHHHH-HHcCCCCCCEEEEEeCCE
Confidence 3455566799999998887776531 2333333321 234443 445677899885322564
No 168
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=76.54 E-value=16 Score=30.82 Aligned_cols=34 Identities=24% Similarity=0.569 Sum_probs=23.5
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc----CCceEEEEcCC
Q 025668 134 RLQLFEFEACPFCRRVREAITEL----DLSVEVFPCPK 167 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL----gIpye~v~v~k 167 (249)
.+..|.-.+||+|++-.-.|.++ ++.+..++++.
T Consensus 53 ~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~ 90 (153)
T TIGR02738 53 ALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDG 90 (153)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 36666667999999888777655 55555566653
No 169
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=75.98 E-value=3.5 Score=33.49 Aligned_cols=56 Identities=9% Similarity=0.100 Sum_probs=35.2
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCC------ceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCe
Q 025668 135 LQLFEFEACPFCRRVREAITELDL------SVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 195 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgI------pye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~ 195 (249)
+.-|+-+|||.|+.+.-+|+++-- .+-.++++. .++. .+..+-..||.++.=.+|.
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~----~~~l-a~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE----VPDF-NKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC----CHHH-HHHcCCCCCCEEEEEECCE
Confidence 344677899999999888877742 233345443 3444 3566677899884322454
No 170
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=75.53 E-value=14 Score=29.48 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=32.9
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcC------CceEEEEcCCCCCCCHHHHHhhCCCCceeEEE
Q 025668 134 RLQLFEFEACPFCRRVREAITELD------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELg------Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLv 189 (249)
-+..|+-+||+.|+...-.++++. +.+-.++|+.. .+...+...-..+|.|+
T Consensus 32 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~----~~l~~~~~~I~~~PTl~ 89 (113)
T cd03006 32 SLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP----QGKCRKQKHFFYFPVIH 89 (113)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC----hHHHHHhcCCcccCEEE
Confidence 466677789999999988888774 23333555432 23332244556789773
No 171
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=75.52 E-value=4.1 Score=28.97 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=25.1
Q ss_pred eEEEEcCCChhhHHHHHHHHHc------CCceEEEEcCCC
Q 025668 135 LQLFEFEACPFCRRVREAITEL------DLSVEVFPCPKG 168 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~EL------gIpye~v~v~kg 168 (249)
|.+|....||+|......|.++ ++.++.+++...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 40 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLL 40 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccC
Confidence 4577777999999999988875 355666666543
No 172
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.48 E-value=27 Score=33.37 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=44.7
Q ss_pred CChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHHHHH
Q 025668 142 ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (249)
Q Consensus 142 ~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~YL~e 209 (249)
.||-|..|.+.+.-.+.|..++-.. ..| ..|.+++|+|++. +|..+..-..|+.||.+
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ss-N~~--------~s~sg~LP~l~~~-ng~~va~~~~iv~~L~k 73 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSS-NPW--------RSPSGKLPYLITD-NGTKVAGPVKIVQFLKK 73 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeec-CCC--------CCCCCCCCeEEec-CCceeccHHHHHHHHHH
Confidence 4899999999998888555443322 111 3678899999985 57899999999999997
No 173
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=75.31 E-value=9.6 Score=28.59 Aligned_cols=53 Identities=19% Similarity=0.404 Sum_probs=33.2
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcC------CceEEEEcCCCCCCCHHHHHhhCCCCceeEEE
Q 025668 134 RLQLFEFEACPFCRRVREAITELD------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELg------Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLv 189 (249)
-+..|.-++|++|+...-.+.++. +.+-.++++.. ..++.. +..+-..+|.++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~--~~~~~~-~~~~i~~~Pt~~ 79 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDED--KNKPLC-GKYGVQGFPTLK 79 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcc--ccHHHH-HHcCCCcCCEEE
Confidence 566677789999998877666652 23333555542 234444 345677899773
No 174
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=75.03 E-value=11 Score=29.58 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=29.8
Q ss_pred CceEEEE--cCCChhhHHHHHHHHHc-------CCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeC
Q 025668 133 TRLQLFE--FEACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 191 (249)
Q Consensus 133 k~L~LYs--~e~SPyCrkVR~~L~EL-------gIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDp 191 (249)
+++.|+. ..+||+|+.-...|.++ |+.+..+..+... ....+. +.. ...+|++.|+
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~-~~~~~~-~~~-~~~~p~~~D~ 88 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPE-KLEAFD-KGK-FLPFPVYADP 88 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH-HHHHHH-Hhc-CCCCeEEECC
Confidence 4454444 35899998755555443 4444334433221 112333 333 3468999986
No 175
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=74.96 E-value=3.3 Score=32.21 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=35.7
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcC-----CceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEe
Q 025668 134 RLQLFEFEACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 197 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELg-----Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L 197 (249)
-+..|.-++|+.|+.+...|+++- +.+-.+++++. .+.+...-..+|.++.=.+|..+
T Consensus 27 vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~------~l~~~~~i~~~Pt~~~f~~G~~v 89 (113)
T cd02957 27 VVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA------FLVNYLDIKVLPTLLVYKNGELI 89 (113)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh------HHHHhcCCCcCCEEEEEECCEEE
Confidence 345566789999999988887763 33333444321 23345567789988443356543
No 176
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.92 E-value=11 Score=35.35 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=53.3
Q ss_pred CCCCCceEEEEcCCC------hhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCC----CCceeEEEeCCCCeEee
Q 025668 129 SDSPTRLQLFEFEAC------PFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGG----KEQFPFLIDPNTGVSMY 198 (249)
Q Consensus 129 ~~pek~L~LYs~e~S------PyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP----~~qVPvLvDpntG~~L~ 198 (249)
|..++.+++|....- =-|..||.+|+-.++.|++++|..+.. .++.++.+-+ ...+|.+.. +|..|.
T Consensus 127 Pgge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~-fr~EL~~~lg~~~~~~~LPrVFV--~GryIG 203 (281)
T KOG2824|consen 127 PGGEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSE-FREELQELLGEDEKAVSLPRVFV--KGRYIG 203 (281)
T ss_pred CCCCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHH-HHHHHHHHHhcccccCccCeEEE--ccEEec
Confidence 567789999976311 258999999999999999999987643 3444444332 467887755 577777
Q ss_pred cHHHHHHH
Q 025668 199 ESGDIVNY 206 (249)
Q Consensus 199 ES~aIi~Y 206 (249)
....|++.
T Consensus 204 gaeeV~~L 211 (281)
T KOG2824|consen 204 GAEEVVRL 211 (281)
T ss_pred cHHHhhhh
Confidence 77766654
No 177
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=73.92 E-value=12 Score=27.94 Aligned_cols=51 Identities=20% Similarity=0.431 Sum_probs=32.1
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcC------CceEEEEcCCCCCCCHHHHHhhCCCCceeEEE
Q 025668 134 RLQLFEFEACPFCRRVREAITELD------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELg------Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLv 189 (249)
-+..|..++|+.|+...-.+.++. +.+-.++|+. .++.. +...-..+|.++
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~----~~~~~-~~~~v~~~Pt~~ 77 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD----DRMLC-RSQGVNSYPSLY 77 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc----cHHHH-HHcCCCccCEEE
Confidence 456667789999998887776652 2233355553 23433 345567899873
No 178
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=73.73 E-value=4.8 Score=31.60 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=25.2
Q ss_pred CCceEEEEcCCChhhHHHHHHHHHc-----CCceEEEEcCC
Q 025668 132 PTRLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPK 167 (249)
Q Consensus 132 ek~L~LYs~e~SPyCrkVR~~L~EL-----gIpye~v~v~k 167 (249)
+..|+.|....||+|++....+..+ ++.+.+++++.
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p~ 46 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEFPI 46 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeCCc
Confidence 3467777777999999998877664 24566666653
No 179
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=72.66 E-value=10 Score=31.89 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=16.5
Q ss_pred CceEEEE-cCCChhhHHHHHHHHH
Q 025668 133 TRLQLFE-FEACPFCRRVREAITE 155 (249)
Q Consensus 133 k~L~LYs-~e~SPyCrkVR~~L~E 155 (249)
+.+.||- -.+||.|++..-.|.+
T Consensus 26 k~vlL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 26 RVLLLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred CEEEEEEECCCChhHHHHHHHHHH
Confidence 4555554 4589999998888865
No 180
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=71.62 E-value=12 Score=29.72 Aligned_cols=56 Identities=25% Similarity=0.411 Sum_probs=32.6
Q ss_pred CceEEEEc-C-CChhhHHHHHHHHHc-------CCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeC
Q 025668 133 TRLQLFEF-E-ACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 191 (249)
Q Consensus 133 k~L~LYs~-e-~SPyCrkVR~~L~EL-------gIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDp 191 (249)
+++.|+.+ . +||.|+.-...|.++ ++.+..+..+.... -.+++.+ . ...+|++.|+
T Consensus 29 k~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~-~~~~~~~-~-~~~~~~~~D~ 93 (146)
T PF08534_consen 29 KPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP-VREFLKK-Y-GINFPVLSDP 93 (146)
T ss_dssp SEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH-HHHHHHH-T-TTTSEEEEET
T ss_pred CeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH-HHHHHHh-h-CCCceEEech
Confidence 44444433 4 799998877665554 45555555554332 4455543 2 3468888884
No 181
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=70.52 E-value=12 Score=30.62 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=30.9
Q ss_pred CChhhHHHHHHH----HHcCCceEEEEcCCC---CCCCH--HHHHh-hCCCCceeEEEeCCCCeEeecHHH
Q 025668 142 ACPFCRRVREAI----TELDLSVEVFPCPKG---SIRHR--EMVRR-LGGKEQFPFLIDPNTGVSMYESGD 202 (249)
Q Consensus 142 ~SPyCrkVR~~L----~ELgIpye~v~v~kg---~~~~r--e~l~~-lnP~~qVPvLvDpntG~~L~ES~a 202 (249)
|||.|+.+.-++ ....-...++.|.-| .|+.+ +|... ...-..||.|+.-+++..|.|...
T Consensus 37 WCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e~ 107 (119)
T PF06110_consen 37 WCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEEC 107 (119)
T ss_dssp SSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhhh
Confidence 899999887554 443333444443222 23332 22211 133567999987666777777554
No 182
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=69.63 E-value=19 Score=30.57 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=29.4
Q ss_pred CceEE-EEcCCChhhHHHHHHHHHc---CCceEEEEcCCCCCCCHHHHHhhCCCCcee-EEEeC
Q 025668 133 TRLQL-FEFEACPFCRRVREAITEL---DLSVEVFPCPKGSIRHREMVRRLGGKEQFP-FLIDP 191 (249)
Q Consensus 133 k~L~L-Ys~e~SPyCrkVR~~L~EL---gIpye~v~v~kg~~~~re~l~~lnP~~qVP-vLvDp 191 (249)
+++.| |.-.+||+|++-.-.|.++ |+.+..++++.......+++.+ .+. ..| ++.|+
T Consensus 69 k~vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~-~~~-~~~~~~~D~ 130 (185)
T PRK15412 69 KPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKE-LGN-PYALSLFDG 130 (185)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHH-cCC-CCceEEEcC
Confidence 34444 3446899998876666555 5554444543322233455543 332 345 35553
No 183
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=69.53 E-value=4 Score=31.35 Aligned_cols=52 Identities=19% Similarity=0.288 Sum_probs=32.0
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc-----CCceEEEEcCCCCCCCHHHHHhhCCCCceeEEE
Q 025668 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL-----gIpye~v~v~kg~~~~re~l~~lnP~~qVPvLv 189 (249)
-+..|.-+||+.|+...-.|+++ ++.+-.++.+ ...++.. +...-..+|.++
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~---~~~~~l~-~~~~V~~~PT~~ 77 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEES---SIKPSLL-SRYGVVGFPTIL 77 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECC---CCCHHHH-HhcCCeecCEEE
Confidence 45666778999999988887766 3333333322 1234443 455677899773
No 184
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=69.00 E-value=25 Score=27.11 Aligned_cols=67 Identities=19% Similarity=0.365 Sum_probs=39.2
Q ss_pred EEcCCChhhHHHHHHHHHcCC--ceEEEEcCCCCCCCHHHHHh--h---CCCCceeEEEeCCCCe-EeecHHHHHHHHHH
Q 025668 138 FEFEACPFCRRVREAITELDL--SVEVFPCPKGSIRHREMVRR--L---GGKEQFPFLIDPNTGV-SMYESGDIVNYLFQ 209 (249)
Q Consensus 138 Ys~e~SPyCrkVR~~L~ELgI--pye~v~v~kg~~~~re~l~~--l---nP~~qVPvLvDpntG~-~L~ES~aIi~YL~e 209 (249)
|....||+|......+..++. .++++++... ...+.+.. + .-...+ .+++ +|. ...++.|+++-+..
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l-~~~~--~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSE--PDQALLASYGISPEDADSRL-HLID--DGERVYRGSDAVLRLLRR 76 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCCCCCEEEEECCCh--hhhhHHHhcCcCHHHHcCee-EEec--CCCEEEEcHHHHHHHHHH
Confidence 344579999999999999975 4666666211 11111111 1 112222 3333 465 88899998887665
No 185
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=68.99 E-value=25 Score=30.02 Aligned_cols=30 Identities=23% Similarity=0.536 Sum_probs=18.3
Q ss_pred eEEEEcCCChhhHHHHHHH----HHcCCceEEEE
Q 025668 135 LQLFEFEACPFCRRVREAI----TELDLSVEVFP 164 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L----~ELgIpye~v~ 164 (249)
+..|...+||.|++..-.+ ++.++++..+.
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 3445566899998765444 33455555554
No 186
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=68.46 E-value=5.2 Score=29.49 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=18.1
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc
Q 025668 134 RLQLFEFEACPFCRRVREAITEL 156 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL 156 (249)
-+.+|..++|++|+.....+.++
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~ 43 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEEL 43 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHH
Confidence 45667778999999888877665
No 187
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=68.43 E-value=32 Score=29.11 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=48.4
Q ss_pred CCceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCce-e--EEEeCCCCeEeecHHHHHHHHH
Q 025668 132 PTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQF-P--FLIDPNTGVSMYESGDIVNYLF 208 (249)
Q Consensus 132 ek~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qV-P--vLvDpntG~~L~ES~aIi~YL~ 208 (249)
...+.||.- .||+|.....+|.+.+-.-.++..+..++.....+. ..|...- + ++.+ +.|..+++|.|+++-+.
T Consensus 8 p~~vvlyDG-~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~-~~~l~~~~~~s~~~~-~~g~~~~~sdA~~~i~~ 84 (137)
T COG3011 8 PDLVVLYDG-VCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLE-AAGLDPEDVDSVLLV-EAGQLLVGSDAAIRILR 84 (137)
T ss_pred CCEEEEECC-cchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHh-hcCCChhhhheeeEe-cCCceEeccHHHHHHHH
Confidence 345566654 799999998999998776555554433334444442 3332211 2 2223 36899999999999887
Q ss_pred HHh
Q 025668 209 QQY 211 (249)
Q Consensus 209 ekY 211 (249)
..-
T Consensus 85 ~L~ 87 (137)
T COG3011 85 LLP 87 (137)
T ss_pred HCC
Confidence 653
No 188
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=68.36 E-value=19 Score=26.54 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=30.4
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcC------CceEEEEcCCCCCCCHHHHHhhCCCCceeEEE
Q 025668 134 RLQLFEFEACPFCRRVREAITELD------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELg------Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLv 189 (249)
-+.+|.-++|+.|+.....+.++. +.+-.++++. ..+.. +..+-..+|.++
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~----~~~~~-~~~~i~~~P~~~ 77 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV----HQSLA-QQYGVRGFPTIK 77 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc----hHHHH-HHCCCCccCEEE
Confidence 455666789999999877665542 2333344432 23444 344556799773
No 189
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=67.98 E-value=25 Score=27.91 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=40.2
Q ss_pred CCCCceEE-EEcCCChhhHHHHHHHHHcC-----CceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEe
Q 025668 130 DSPTRLQL-FEFEACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 197 (249)
Q Consensus 130 ~pek~L~L-Ys~e~SPyCrkVR~~L~ELg-----Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L 197 (249)
.+.+.+.+ |+-.||+.|+.+.-.++++- +.|-.+++++ .++... ...-..+|+++.--+|..+
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde----~~~~~~-~~~V~~~PTf~f~k~g~~~ 87 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE----LEEVAK-EFNVKAMPTFVFYKGGEEV 87 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc----CHhHHH-hcCceEeeEEEEEECCEEE
Confidence 44555555 45579999999998888884 3344466665 455553 4557789988543356443
No 190
>PHA03075 glutaredoxin-like protein; Provisional
Probab=66.81 E-value=7.1 Score=32.44 Aligned_cols=34 Identities=26% Similarity=0.531 Sum_probs=30.5
Q ss_pred CceEEEEcCCChhhHHHHHHHHHcCCceEEEEcC
Q 025668 133 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCP 166 (249)
Q Consensus 133 k~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~ 166 (249)
+.+.|++.+.|+-|.-+..+|.++.=+|+...|+
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVN 36 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRVN 36 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEEE
Confidence 4689999999999999999999999999987654
No 191
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=66.78 E-value=34 Score=34.75 Aligned_cols=73 Identities=12% Similarity=0.180 Sum_probs=40.8
Q ss_pred eEEEEcCCChhhHHHHHH-------HHHc-CCceEEEEcCCCCCCCHHHHHhhCCCCceeEE--EeCCCCeEe-------
Q 025668 135 LQLFEFEACPFCRRVREA-------ITEL-DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFL--IDPNTGVSM------- 197 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~-------L~EL-gIpye~v~v~kg~~~~re~l~~lnP~~qVPvL--vDpntG~~L------- 197 (249)
+.-|+-+||+.|+..... -+++ ++.+..+|+++.+...++.. +..+-..+|.+ +|+ +|..+
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~-~~~~v~g~Pt~~~~~~-~G~~i~~~r~~G 555 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALL-KHYNVLGLPTILFFDA-QGQEIPDARVTG 555 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHH-HHcCCCCCCEEEEECC-CCCCcccccccC
Confidence 444567899999876432 1222 33333356655443445555 45567779977 343 45431
Q ss_pred -ecHHHHHHHHHH
Q 025668 198 -YESGDIVNYLFQ 209 (249)
Q Consensus 198 -~ES~aIi~YL~e 209 (249)
.+..++.++|++
T Consensus 556 ~~~~~~f~~~L~~ 568 (571)
T PRK00293 556 FMDAAAFAAHLRQ 568 (571)
T ss_pred CCCHHHHHHHHHH
Confidence 245567777665
No 192
>smart00594 UAS UAS domain.
Probab=65.91 E-value=44 Score=26.44 Aligned_cols=61 Identities=13% Similarity=0.256 Sum_probs=34.7
Q ss_pred ceEEEEcCCChhhHH-HHHHHHHc------CCceEEEEcCCCCCCCHHHHHhhCCCCceeEE--EeCCCCe
Q 025668 134 RLQLFEFEACPFCRR-VREAITEL------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFL--IDPNTGV 195 (249)
Q Consensus 134 ~L~LYs~e~SPyCrk-VR~~L~EL------gIpye~v~v~kg~~~~re~l~~lnP~~qVPvL--vDpntG~ 195 (249)
.+..++.++|++|+. .|.+|+.- +=.|....++.......+.. ......++|.+ +++++|.
T Consensus 30 ~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~-~~~~~~~~P~~~~l~~~~g~ 99 (122)
T smart00594 30 LWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVS-QFYKLDSFPYVAIVDPRTGQ 99 (122)
T ss_pred EEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHH-HhcCcCCCCEEEEEecCCCc
Confidence 455556779999976 34434322 22455554544333344444 45556789977 6776654
No 193
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=65.78 E-value=29 Score=32.59 Aligned_cols=76 Identities=17% Similarity=0.285 Sum_probs=46.4
Q ss_pred ceEEEEcCCChhhHHHHHHHHH-------cC--CceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeE-------e
Q 025668 134 RLQLFEFEACPFCRRVREAITE-------LD--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS-------M 197 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~E-------Lg--Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~-------L 197 (249)
-+.+|.-+||++|+...-.+.+ .+ +.+-.++|+.. .+.. +..+-..+|.++.-..|.. .
T Consensus 21 ~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~----~~l~-~~~~i~~~Pt~~~~~~g~~~~~~~~g~ 95 (462)
T TIGR01130 21 VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE----KDLA-QKYGVSGYPTLKIFRNGEDSVSDYNGP 95 (462)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc----HHHH-HhCCCccccEEEEEeCCccceeEecCC
Confidence 4677777899999987655543 23 44555666542 3333 3455677997732123332 2
Q ss_pred ecHHHHHHHHHHHhCCC
Q 025668 198 YESGDIVNYLFQQYGKG 214 (249)
Q Consensus 198 ~ES~aIi~YL~ekY~~~ 214 (249)
.+..+|.+|+.+..+..
T Consensus 96 ~~~~~l~~~i~~~~~~~ 112 (462)
T TIGR01130 96 RDADGIVKYMKKQSGPA 112 (462)
T ss_pred CCHHHHHHHHHHhcCCC
Confidence 35778999998877533
No 194
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=65.70 E-value=11 Score=31.15 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=25.3
Q ss_pred eEEEEcCCChhhHHHHH----HHHHc-CCceEEEEcCCC
Q 025668 135 LQLFEFEACPFCRRVRE----AITEL-DLSVEVFPCPKG 168 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~----~L~EL-gIpye~v~v~kg 168 (249)
|++|....||||..... ++.+. ++.++.+++...
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 67888889999965554 44455 788888888754
No 195
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=65.66 E-value=28 Score=26.98 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=15.4
Q ss_pred eEEEEcCCChhhHHHHHHHHHc
Q 025668 135 LQLFEFEACPFCRRVREAITEL 156 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~EL 156 (249)
+..|...+||.|+...-.|.++
T Consensus 29 vv~F~a~~C~~C~~~~~~l~~l 50 (127)
T cd03010 29 LLNVWASWCAPCREEHPVLMAL 50 (127)
T ss_pred EEEEEcCcCHHHHHHHHHHHHH
Confidence 3444456899999877777665
No 196
>PLN02309 5'-adenylylsulfate reductase
Probab=65.51 E-value=39 Score=33.69 Aligned_cols=73 Identities=19% Similarity=0.409 Sum_probs=41.8
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcC-------CceEEEEcCCCCCCCHHHHHhhCCCCceeEEEe-CCCC--eEeec----
Q 025668 134 RLQLFEFEACPFCRRVREAITELD-------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID-PNTG--VSMYE---- 199 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELg-------Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLvD-pntG--~~L~E---- 199 (249)
-+..|+-+||++|+.+.-.++++. +.+-.++++.. ..+...+...-..+|.++. +++. ...|.
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~---~~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~R 444 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD---QKEFAKQELQLGSFPTILLFPKNSSRPIKYPSEKR 444 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc---chHHHHhhCCCceeeEEEEEeCCCCCeeecCCCCc
Confidence 467778889999998877776652 33333454421 2333333345678998843 2222 23443
Q ss_pred -HHHHHHHHHH
Q 025668 200 -SGDIVNYLFQ 209 (249)
Q Consensus 200 -S~aIi~YL~e 209 (249)
..+|+.|+.+
T Consensus 445 ~~~~L~~fv~~ 455 (457)
T PLN02309 445 DVDSLLSFVNS 455 (457)
T ss_pred CHHHHHHHHHH
Confidence 3567777654
No 197
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=64.85 E-value=6.3 Score=29.08 Aligned_cols=51 Identities=20% Similarity=0.413 Sum_probs=30.7
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc-----C----CceEEEEcCCCCCCCHHHHHhhCCCCceeEEE
Q 025668 134 RLQLFEFEACPFCRRVREAITEL-----D----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL-----g----Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLv 189 (249)
-+..|+-++|+.|+.....+.++ + +.+-.+++++. .+.. +..+-..+|.++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~----~~~~-~~~~v~~~Pt~~ 78 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH----RELC-SEFQVRGYPTLL 78 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC----hhhH-hhcCCCcCCEEE
Confidence 56667778999999877666544 1 33333454432 2333 345567799773
No 198
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=64.79 E-value=5.7 Score=29.23 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=30.9
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc----C--CceEEEEcCCCCCCCHHHHHhhCCCCceeEEE
Q 025668 134 RLQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL----g--Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLv 189 (249)
-+.+|..++||.|+.....+.++ . -.+.+..++-.. ...+.. +..+-..+|.++
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~~~~~-~~~~i~~~P~~~ 80 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE-ANKDLA-KKYGVSGFPTLK 80 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC-cchhhH-HhCCCCCcCEEE
Confidence 46677788999998776666553 2 124443333221 023444 345567899774
No 199
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=64.54 E-value=31 Score=31.86 Aligned_cols=61 Identities=21% Similarity=0.313 Sum_probs=38.7
Q ss_pred CceEEEEcCCChhhHHHHHHH----HHcCCceEEEEcCCCCC-------CCHHHHHhhCCCCceeEE--EeCCCC
Q 025668 133 TRLQLFEFEACPFCRRVREAI----TELDLSVEVFPCPKGSI-------RHREMVRRLGGKEQFPFL--IDPNTG 194 (249)
Q Consensus 133 k~L~LYs~e~SPyCrkVR~~L----~ELgIpye~v~v~kg~~-------~~re~l~~lnP~~qVPvL--vDpntG 194 (249)
-.+.+|.-..||||++.--+| ++.|+++..+.++.... .......+ -+-..+|+| |+++++
T Consensus 152 ~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~-l~v~~~Pal~Lv~~~t~ 225 (256)
T TIGR02739 152 YGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQH-LGVKYFPALYLVNPKSQ 225 (256)
T ss_pred eeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHh-cCCccCceEEEEECCCC
Confidence 356666667899998765555 55689888888875421 11222223 345679976 777666
No 200
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.42 E-value=13 Score=31.06 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=38.0
Q ss_pred CChhhHHHH----HHHHHcCCceEEEEcCCC---CCCCH--HHHHhhCCC--CceeEEEeCC-CCeEeecHHHHHHHHHH
Q 025668 142 ACPFCRRVR----EAITELDLSVEVFPCPKG---SIRHR--EMVRRLGGK--EQFPFLIDPN-TGVSMYESGDIVNYLFQ 209 (249)
Q Consensus 142 ~SPyCrkVR----~~L~ELgIpye~v~v~kg---~~~~r--e~l~~lnP~--~qVPvLvDpn-tG~~L~ES~aIi~YL~e 209 (249)
|||.|+++- .+|++...++.++.|.-| .|+.+ +|. ..|. .-||.|+.-. .+..+.|.......|.+
T Consensus 44 WCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR--~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 44 WCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFR--KDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred CCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccc--cCCCceeecceeeEEcCccccchHhHhhHHHHHH
Confidence 899998764 455655556555554333 23332 222 2332 4689996532 34566666665666655
Q ss_pred H
Q 025668 210 Q 210 (249)
Q Consensus 210 k 210 (249)
.
T Consensus 122 ~ 122 (128)
T KOG3425|consen 122 M 122 (128)
T ss_pred H
Confidence 3
No 201
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=63.82 E-value=20 Score=29.97 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=19.3
Q ss_pred eEEEEcCCChhhHHHHHHHHHc---CCceEEEEc
Q 025668 135 LQLFEFEACPFCRRVREAITEL---DLSVEVFPC 165 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~EL---gIpye~v~v 165 (249)
+..|...+||.|++..-.|.++ ++.+..++.
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~ 100 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDY 100 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 3344456899999876666555 554444444
No 202
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=62.85 E-value=16 Score=26.41 Aligned_cols=55 Identities=24% Similarity=0.377 Sum_probs=29.2
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc-------CCceEEEEcCCC-CCCCHHHHHhhCCCCceeEEEe
Q 025668 134 RLQLFEFEACPFCRRVREAITEL-------DLSVEVFPCPKG-SIRHREMVRRLGGKEQFPFLID 190 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL-------gIpye~v~v~kg-~~~~re~l~~lnP~~qVPvLvD 190 (249)
.+..|...+||.|++....|.++ ++.+..+.++.. .....+++.+ .+ ...|++.|
T Consensus 22 ~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~-~~-~~~~~~~~ 84 (116)
T cd02966 22 VLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKK-YG-ITFPVLLD 84 (116)
T ss_pred EEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHH-cC-CCcceEEc
Confidence 45555667999998776666555 233444455443 2222344432 22 45556655
No 203
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=62.49 E-value=12 Score=28.30 Aligned_cols=71 Identities=23% Similarity=0.495 Sum_probs=36.6
Q ss_pred CceEE-EEcCCChhhHHHHHHHHHcC----CceEEEEcCCCC-CCCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHHH
Q 025668 133 TRLQL-FEFEACPFCRRVREAITELD----LSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (249)
Q Consensus 133 k~L~L-Ys~e~SPyCrkVR~~L~ELg----Ipye~v~v~kg~-~~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~Y 206 (249)
+++.| |.-.+||.|+...-.|.++. -.+.++-+..++ ....+++ +..+...+|++.+ + +
T Consensus 22 k~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~-~~~~~~~~p~~~~---~-------~---- 86 (114)
T cd02967 22 RPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFL-KKHGLEAFPYVLS---A-------E---- 86 (114)
T ss_pred CeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHH-HHhCCCCCcEEec---H-------H----
Confidence 44433 34458999998766665542 123333332222 2223444 3444445787753 1 1
Q ss_pred HHHHhCCCCCCC
Q 025668 207 LFQQYGKGRSPS 218 (249)
Q Consensus 207 L~ekY~~~~~P~ 218 (249)
+.+.|+....|.
T Consensus 87 ~~~~~~~~~~P~ 98 (114)
T cd02967 87 LGMAYQVSKLPY 98 (114)
T ss_pred HHhhcCCCCcCe
Confidence 346777666664
No 204
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=62.21 E-value=12 Score=28.48 Aligned_cols=56 Identities=27% Similarity=0.515 Sum_probs=31.1
Q ss_pred CceEEEEcC--CChhhHHHHHHHHHc-------CCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeC
Q 025668 133 TRLQLFEFE--ACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 191 (249)
Q Consensus 133 k~L~LYs~e--~SPyCrkVR~~L~EL-------gIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDp 191 (249)
+++.|+-+. +||.|......|.++ |+.+..+..+.. ....++..+.+ ..+|++.|+
T Consensus 26 k~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~-~~~~~~~~~~~--~~~~~~~D~ 90 (124)
T PF00578_consen 26 KPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP-EEIKQFLEEYG--LPFPVLSDP 90 (124)
T ss_dssp SEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH-HHHHHHHHHHT--CSSEEEEET
T ss_pred CcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc-cchhhhhhhhc--cccccccCc
Confidence 455555443 699998777666554 344434444321 12344544333 568899885
No 205
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=61.80 E-value=39 Score=26.33 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=14.4
Q ss_pred CceEE-EEcCCChhhHHHHHHHHH
Q 025668 133 TRLQL-FEFEACPFCRRVREAITE 155 (249)
Q Consensus 133 k~L~L-Ys~e~SPyCrkVR~~L~E 155 (249)
+.+.| |...+||.|++..-.|.+
T Consensus 19 k~vll~Fwa~wC~~C~~~~p~l~~ 42 (131)
T cd03009 19 KTVGLYFSASWCPPCRAFTPKLVE 42 (131)
T ss_pred cEEEEEEECCCChHHHHHhHHHHH
Confidence 33433 345689999976666543
No 206
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=61.47 E-value=36 Score=26.30 Aligned_cols=76 Identities=17% Similarity=0.300 Sum_probs=42.0
Q ss_pred CceEEE-EcCCChhhHHH-HHHHHHc------CCceEEEEcCCCCCCCHHHHHhhCCCCceeEE--EeCCCCeEe-----
Q 025668 133 TRLQLF-EFEACPFCRRV-REAITEL------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFL--IDPNTGVSM----- 197 (249)
Q Consensus 133 k~L~LY-s~e~SPyCrkV-R~~L~EL------gIpye~v~v~kg~~~~re~l~~lnP~~qVPvL--vDpntG~~L----- 197 (249)
+++-+| +.++|++|.+. +.+|+.- +-.|..+.++..+....++. ...+...+|++ +|+.+|..+
T Consensus 18 K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~-~~~~~~~~P~~~~i~~~~g~~l~~~~G 96 (114)
T cd02958 18 KWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFL-QSYKVDKYPHIAIIDPRTGEVLKVWSG 96 (114)
T ss_pred ceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHH-HHhCccCCCeEEEEeCccCcEeEEEcC
Confidence 445444 56789999875 3344333 22466665554433344444 56677889977 565345432
Q ss_pred -ecHHHHHHHHHH
Q 025668 198 -YESGDIVNYLFQ 209 (249)
Q Consensus 198 -~ES~aIi~YL~e 209 (249)
.+..+++..|.+
T Consensus 97 ~~~~~~f~~~L~~ 109 (114)
T cd02958 97 NITPEDLLSQLIE 109 (114)
T ss_pred CCCHHHHHHHHHH
Confidence 234445555543
No 207
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=61.47 E-value=24 Score=27.50 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=31.0
Q ss_pred CCceEEEEc--CCChhhHHHHHHHHHc-------CCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeC
Q 025668 132 PTRLQLFEF--EACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 191 (249)
Q Consensus 132 ek~L~LYs~--e~SPyCrkVR~~L~EL-------gIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDp 191 (249)
.+++.|+.+ .+||.|......|.++ ++.+..+.++.. .....+. +..+...+|+|.|+
T Consensus 22 gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~-~~~~~~~-~~~~~~~~~~l~D~ 88 (140)
T cd02971 22 GKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSP-FSHKAWA-EKEGGLNFPLLSDP 88 (140)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHH-hcccCCCceEEECC
Confidence 455666655 4799998765555443 444433443211 1123333 33435578988875
No 208
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=59.99 E-value=13 Score=30.25 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=23.7
Q ss_pred CCceEEEEcCCChhhHHHHHHHHHc------CCceEEEEcC
Q 025668 132 PTRLQLFEFEACPFCRRVREAITEL------DLSVEVFPCP 166 (249)
Q Consensus 132 ek~L~LYs~e~SPyCrkVR~~L~EL------gIpye~v~v~ 166 (249)
+..|..|....||+|++....+..+ ++.++.+++.
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 3456666666899999888777544 4556655654
No 209
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=59.23 E-value=12 Score=32.06 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=33.9
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCC---ceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEe
Q 025668 135 LQLFEFEACPFCRRVREAITELDL---SVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 197 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgI---pye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L 197 (249)
+..|+-++|+.|+.+.-.|.++-- .+.++.|+-.. . .+....+-..||+|+.=.+|..+
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~--~--~l~~~f~v~~vPTlllyk~G~~v 148 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA--T--GASDEFDTDALPALLVYKGGELI 148 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc--h--hhHHhCCCCCCCEEEEEECCEEE
Confidence 334455799999988877766632 23333333221 1 23456777889988432356533
No 210
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=58.91 E-value=13 Score=30.19 Aligned_cols=64 Identities=16% Similarity=0.039 Sum_probs=40.8
Q ss_pred CCCceEEEEcCC--ChhhHHHHHHHHHcCCce------EEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEeec
Q 025668 131 SPTRLQLFEFEA--CPFCRRVREAITELDLSV------EVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE 199 (249)
Q Consensus 131 pek~L~LYs~e~--SPyCrkVR~~L~ELgIpy------e~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L~E 199 (249)
....+.+|+-++ ||-|+.+.-+|+++--.| -.++++. .++ +.....-..||.|+.=.+|..+..
T Consensus 27 ~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~----~~~-la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 27 GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD----EQA-LAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC----CHH-HHHHcCCCcCCEEEEEECCEEEEE
Confidence 344666777664 999999999988874332 2344433 243 445677888998854336765443
No 211
>PTZ00102 disulphide isomerase; Provisional
Probab=57.57 E-value=58 Score=31.08 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=44.8
Q ss_pred CceEEEEcCCChhhHHHHHHHHH-------cC--CceEEEEcCCCCCCCHHHHHhhCCCCceeEEE-eCCCCeEe----e
Q 025668 133 TRLQLFEFEACPFCRRVREAITE-------LD--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI-DPNTGVSM----Y 198 (249)
Q Consensus 133 k~L~LYs~e~SPyCrkVR~~L~E-------Lg--Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLv-DpntG~~L----~ 198 (249)
.-+..|.-+||++|++..-.+.+ .+ +.+-.++|.. ..+.. +..+-..+|.++ -.+++..- .
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~----~~~l~-~~~~i~~~Pt~~~~~~g~~~~y~g~~ 125 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE----EMELA-QEFGVRGYPTIKFFNKGNPVNYSGGR 125 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC----CHHHH-HhcCCCcccEEEEEECCceEEecCCC
Confidence 46777788899999977543332 22 3344455543 23333 345566799773 32233222 3
Q ss_pred cHHHHHHHHHHHhCC
Q 025668 199 ESGDIVNYLFQQYGK 213 (249)
Q Consensus 199 ES~aIi~YL~ekY~~ 213 (249)
....|++||.+..+.
T Consensus 126 ~~~~l~~~l~~~~~~ 140 (477)
T PTZ00102 126 TADGIVSWIKKLTGP 140 (477)
T ss_pred CHHHHHHHHHHhhCC
Confidence 477899999987654
No 212
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=57.36 E-value=12 Score=29.91 Aligned_cols=38 Identities=21% Similarity=0.465 Sum_probs=25.3
Q ss_pred CCCceEEEEcCCChhhHHHHHHHH----Hc----CCceEEEEcCCC
Q 025668 131 SPTRLQLFEFEACPFCRRVREAIT----EL----DLSVEVFPCPKG 168 (249)
Q Consensus 131 pek~L~LYs~e~SPyCrkVR~~L~----EL----gIpye~v~v~kg 168 (249)
.+..|++|....||+|++....+. ++ .|.+.+++++..
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~ 57 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD 57 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc
Confidence 344688888889999998866654 33 355666776543
No 213
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=56.94 E-value=61 Score=28.57 Aligned_cols=82 Identities=22% Similarity=0.352 Sum_probs=45.8
Q ss_pred CCCCCceEEEEcCCChhhHHH----------HHHHHHc------CCceE-EEEcCCCC---CCCHHHHHhhCCCCceeEE
Q 025668 129 SDSPTRLQLFEFEACPFCRRV----------REAITEL------DLSVE-VFPCPKGS---IRHREMVRRLGGKEQFPFL 188 (249)
Q Consensus 129 ~~pek~L~LYs~e~SPyCrkV----------R~~L~EL------gIpye-~v~v~kg~---~~~re~l~~lnP~~qVPvL 188 (249)
+.....+.+|+.+.|+||.+. |++|.+. .+.+. .+....|+ ....+.+.+...-...|.+
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf 119 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF 119 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence 344456788888999999754 4444441 11111 11111222 1223445567777778876
Q ss_pred E--eCCCCeEeec---------HHHHHHHHHHHh
Q 025668 189 I--DPNTGVSMYE---------SGDIVNYLFQQY 211 (249)
Q Consensus 189 v--DpntG~~L~E---------S~aIi~YL~ekY 211 (249)
+ |. +|..+.+ =.+|++|+++-+
T Consensus 120 vFfdk-~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~ 152 (182)
T COG2143 120 VFFDK-TGKTILELPGYMPPEQFLAVLKYVADGK 152 (182)
T ss_pred EEEcC-CCCEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 4 44 5666554 456888887643
No 214
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=56.81 E-value=50 Score=30.37 Aligned_cols=61 Identities=23% Similarity=0.252 Sum_probs=37.5
Q ss_pred CceEEEEcCCChhhHHHHHHH----HHcCCceEEEEcCCCC-CC------CHHHHHhhCCCCceeEE--EeCCCC
Q 025668 133 TRLQLFEFEACPFCRRVREAI----TELDLSVEVFPCPKGS-IR------HREMVRRLGGKEQFPFL--IDPNTG 194 (249)
Q Consensus 133 k~L~LYs~e~SPyCrkVR~~L----~ELgIpye~v~v~kg~-~~------~re~l~~lnP~~qVPvL--vDpntG 194 (249)
-.|.+|.-..||||++---+| ++.|+++..+.++... .. ...... ..+-..+|+| |+++++
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~-~l~v~~~PAl~Lv~~~t~ 218 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQ-RLGVKYFPALMLVDPKSG 218 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHH-hcCCcccceEEEEECCCC
Confidence 356777777899998755554 5558988878776422 11 112222 2335678976 777765
No 215
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=54.77 E-value=17 Score=29.98 Aligned_cols=31 Identities=13% Similarity=0.217 Sum_probs=22.0
Q ss_pred eEEEEcCCChhhHHHHHHHH----HcCCceEEEEc
Q 025668 135 LQLFEFEACPFCRRVREAIT----ELDLSVEVFPC 165 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~----ELgIpye~v~v 165 (249)
|++|....||||......|. +.+++++.+++
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 46787789999977655554 55777777665
No 216
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=54.62 E-value=66 Score=26.07 Aligned_cols=74 Identities=8% Similarity=0.144 Sum_probs=41.2
Q ss_pred CCceEEEEcC-CChh--hH--HHH--------HHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEe-
Q 025668 132 PTRLQLFEFE-ACPF--CR--RVR--------EAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM- 197 (249)
Q Consensus 132 ek~L~LYs~e-~SPy--Cr--kVR--------~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L- 197 (249)
+.++.++.++ +|+. |+ ... ..|++.++.+-.++++.. ++ +.+..+-..+|+|+.=.+|..+
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~----~~-La~~~~I~~iPTl~lfk~G~~v~ 101 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD----AK-VAKKLGLDEEDSIYVFKDDEVIE 101 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC----HH-HHHHcCCccccEEEEEECCEEEE
Confidence 3455555554 5554 87 222 222233566666676643 34 4456778889988432246421
Q ss_pred ----ecHHHHHHHHHHH
Q 025668 198 ----YESGDIVNYLFQQ 210 (249)
Q Consensus 198 ----~ES~aIi~YL~ek 210 (249)
....+|+.||.+.
T Consensus 102 ~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 102 YDGEFAADTLVEFLLDL 118 (120)
T ss_pred eeCCCCHHHHHHHHHHH
Confidence 2356788888764
No 217
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=54.61 E-value=16 Score=30.81 Aligned_cols=59 Identities=19% Similarity=0.151 Sum_probs=34.1
Q ss_pred eEEEEcCCChhhHHHHHHHHHcC-------CceEEEEcCCCCCCCHHHHHhhCCCC------ceeEEEeCCCCeEee
Q 025668 135 LQLFEFEACPFCRRVREAITELD-------LSVEVFPCPKGSIRHREMVRRLGGKE------QFPFLIDPNTGVSMY 198 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELg-------Ipye~v~v~kg~~~~re~l~~lnP~~------qVPvLvDpntG~~L~ 198 (249)
+..|..+|||.|+.....++++- +.+-.+++++. ++...+ ..-. ++|+++.=.+|..+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~----~~la~~-~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF----PNVAEK-FRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC----HHHHHH-cCceecCCcCCCCEEEEEECCEEEE
Confidence 56667789999998887776652 33334455432 333322 3233 489874333676443
No 218
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=54.13 E-value=58 Score=32.60 Aligned_cols=53 Identities=23% Similarity=0.444 Sum_probs=31.7
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcC-------CceEEEEcCCCCCCCHHHHHhhCCCCceeEEE
Q 025668 134 RLQLFEFEACPFCRRVREAITELD-------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELg-------Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLv 189 (249)
-|..|+-+|||+|+...-.++++. +.+-.++++... .+...+...-..+|.++
T Consensus 374 VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~---~~~~~~~~~I~~~PTii 433 (463)
T TIGR00424 374 WLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ---KEFAKQELQLGSFPTIL 433 (463)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc---cHHHHHHcCCCccceEE
Confidence 355667789999998877766552 334445665421 12232334566799773
No 219
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=53.23 E-value=20 Score=28.38 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=14.7
Q ss_pred CceEE-EEcCCChhhHHHHHHHHH
Q 025668 133 TRLQL-FEFEACPFCRRVREAITE 155 (249)
Q Consensus 133 k~L~L-Ys~e~SPyCrkVR~~L~E 155 (249)
+.+.| |...+||.|+...-.|.+
T Consensus 18 k~vll~F~atwC~~C~~~~p~l~~ 41 (132)
T cd02964 18 KTVGLYFSASWCPPCRAFTPKLVE 41 (132)
T ss_pred CEEEEEEECCCCchHHHHHHHHHH
Confidence 34433 345689999987666543
No 220
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=50.56 E-value=36 Score=26.65 Aligned_cols=53 Identities=23% Similarity=0.345 Sum_probs=30.7
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcC---------CceEEEEcCCCCCCCHHHHHhhCCCCceeEEE
Q 025668 134 RLQLFEFEACPFCRRVREAITELD---------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELg---------Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLv 189 (249)
-+..|+.+||+.|+.....++++. +.+-.++|+.. ...+.. +...-..+|.++
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~--~~~~~~-~~~~i~~~Pt~~ 83 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE--ENVALC-RDFGVTGYPTLR 83 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch--hhHHHH-HhCCCCCCCEEE
Confidence 455566789999998777765542 22223344322 223333 345567789774
No 221
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=50.22 E-value=25 Score=30.35 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=23.8
Q ss_pred ceEEEEcCCChhhHHHHHH----HHHcCCceEEEEcC
Q 025668 134 RLQLFEFEACPFCRRVREA----ITELDLSVEVFPCP 166 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~----L~ELgIpye~v~v~ 166 (249)
.|.+|....||||.....- +.+.+++++.+++.
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~ 38 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVF 38 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence 4788988899999765444 44567777777763
No 222
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=49.35 E-value=54 Score=25.52 Aligned_cols=55 Identities=24% Similarity=0.420 Sum_probs=28.7
Q ss_pred CceEEEEc--CCChhhHHHHHHHH-------HcCCceEEEEcCCCC-CCCHHHHHhhCCCCceeEEEeC
Q 025668 133 TRLQLFEF--EACPFCRRVREAIT-------ELDLSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLIDP 191 (249)
Q Consensus 133 k~L~LYs~--e~SPyCrkVR~~L~-------ELgIpye~v~v~kg~-~~~re~l~~lnP~~qVPvLvDp 191 (249)
+.+.|+-+ .+||.|......|. +.|+. ++-|..+. ....+++.+ .+ -.+|++.|+
T Consensus 24 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~--vv~is~d~~~~~~~~~~~-~~-~~~~~l~D~ 88 (140)
T cd03017 24 KPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAV--VIGVSPDSVESHAKFAEK-YG-LPFPLLSDP 88 (140)
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCE--EEEEcCCCHHHHHHHHHH-hC-CCceEEECC
Confidence 45555554 47999976444433 33444 44443322 222344433 33 358888875
No 223
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=49.00 E-value=47 Score=25.29 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=15.7
Q ss_pred ceEEEEcCCChhhHHHHHHHHHc
Q 025668 134 RLQLFEFEACPFCRRVREAITEL 156 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~EL 156 (249)
.+..|...+||+|+.....|..+
T Consensus 23 ~vl~F~~~~C~~C~~~~~~l~~~ 45 (123)
T cd03011 23 VLVYFWATWCPVCRFTSPTVNQL 45 (123)
T ss_pred EEEEEECCcChhhhhhChHHHHH
Confidence 34455567899999876666554
No 224
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=48.71 E-value=34 Score=34.11 Aligned_cols=76 Identities=20% Similarity=0.372 Sum_probs=57.4
Q ss_pred CChhhHHHHHHHHHcC--C-ceEEEEcCCCCCCCHHHHHhh---CC--CCceeEE----EeC-CCCeEeecHHHHHHHHH
Q 025668 142 ACPFCRRVREAITELD--L-SVEVFPCPKGSIRHREMVRRL---GG--KEQFPFL----IDP-NTGVSMYESGDIVNYLF 208 (249)
Q Consensus 142 ~SPyCrkVR~~L~ELg--I-pye~v~v~kg~~~~re~l~~l---nP--~~qVPvL----vDp-ntG~~L~ES~aIi~YL~ 208 (249)
.|||-.|+-++.++|. + +|.++-|.+......+|+.++ |+ ..+=|++ +|. ..|..|...++-++|..
T Consensus 3 ~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~~~ 82 (452)
T cd05295 3 DCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEYAE 82 (452)
T ss_pred CCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHHHH
Confidence 6999999999999985 4 499988877655556777543 33 4567887 442 23478999999999999
Q ss_pred HHhCCCCCC
Q 025668 209 QQYGKGRSP 217 (249)
Q Consensus 209 ekY~~~~~P 217 (249)
..||-....
T Consensus 83 ~yyg~~s~m 91 (452)
T cd05295 83 SYYGITSSM 91 (452)
T ss_pred HHhCccccc
Confidence 999965544
No 225
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=47.02 E-value=25 Score=29.39 Aligned_cols=32 Identities=25% Similarity=0.606 Sum_probs=21.5
Q ss_pred eEEEEcCCChhhHHHHHHH----HHc----CCceEEEEcC
Q 025668 135 LQLFEFEACPFCRRVREAI----TEL----DLSVEVFPCP 166 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L----~EL----gIpye~v~v~ 166 (249)
|++|....||||......| ++. +++++++++.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~ 40 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFE 40 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeee
Confidence 4678888999998655555 455 4666666653
No 226
>PTZ00056 glutathione peroxidase; Provisional
Probab=46.89 E-value=43 Score=29.11 Aligned_cols=68 Identities=13% Similarity=0.289 Sum_probs=33.7
Q ss_pred EEEcCCChhhHHHHHHHHHc-------CCceEEEEcCC------CC-CCCHHHHHhhCCCCceeEEEeCC-CCeEeecHH
Q 025668 137 LFEFEACPFCRRVREAITEL-------DLSVEVFPCPK------GS-IRHREMVRRLGGKEQFPFLIDPN-TGVSMYESG 201 (249)
Q Consensus 137 LYs~e~SPyCrkVR~~L~EL-------gIpye~v~v~k------g~-~~~re~l~~lnP~~qVPvLvDpn-tG~~L~ES~ 201 (249)
-|...+||+|++-.-.|.++ |+.+.-++++. ++ .....+++ ..+ -.+|++.|.+ +|. +..
T Consensus 45 ~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~-~~~-~~fpvl~d~~v~g~---~~~ 119 (199)
T PTZ00056 45 TNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFND-KNK-IKYNFFEPIEVNGE---NTH 119 (199)
T ss_pred EEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHH-HcC-CCceeeeeeeccCC---ccC
Confidence 33446899998755555444 45444455432 11 12334543 332 3578886421 121 344
Q ss_pred HHHHHHHH
Q 025668 202 DIVNYLFQ 209 (249)
Q Consensus 202 aIi~YL~e 209 (249)
.+.+||.+
T Consensus 120 ~l~~~l~~ 127 (199)
T PTZ00056 120 ELFKFLKA 127 (199)
T ss_pred HHHHHHHH
Confidence 45555553
No 227
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=46.69 E-value=24 Score=25.81 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=19.1
Q ss_pred EEcCCChhhHHHHHHHHHc----C--CceEEEEcC
Q 025668 138 FEFEACPFCRRVREAITEL----D--LSVEVFPCP 166 (249)
Q Consensus 138 Ys~e~SPyCrkVR~~L~EL----g--Ipye~v~v~ 166 (249)
|...+|+.|+.....|.++ + -.++++-|.
T Consensus 8 fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs 42 (95)
T PF13905_consen 8 FWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVS 42 (95)
T ss_dssp EE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE
T ss_pred EECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 3445899999988888776 2 445555443
No 228
>PTZ00062 glutaredoxin; Provisional
Probab=45.90 E-value=1.1e+02 Score=27.22 Aligned_cols=69 Identities=9% Similarity=0.093 Sum_probs=44.0
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCc---eEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeE-----eecHHHHHHH
Q 025668 135 LQLFEFEACPFCRRVREAITELDLS---VEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS-----MYESGDIVNY 206 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIp---ye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~-----L~ES~aIi~Y 206 (249)
+..|.-+|||-|+.+..+|.++--+ +.+..|+.+ ..-..||.++.-.+|.. =.+...+..+
T Consensus 21 vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-----------~~V~~vPtfv~~~~g~~i~r~~G~~~~~~~~~ 89 (204)
T PTZ00062 21 VLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-----------DANNEYGVFEFYQNSQLINSLEGCNTSTLVSF 89 (204)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-----------cCcccceEEEEEECCEEEeeeeCCCHHHHHHH
Confidence 3444467999999999999988543 444455432 33556997744235542 2346778888
Q ss_pred HHHHhCCC
Q 025668 207 LFQQYGKG 214 (249)
Q Consensus 207 L~ekY~~~ 214 (249)
|.+.++..
T Consensus 90 ~~~~~~~~ 97 (204)
T PTZ00062 90 IRGWAQKG 97 (204)
T ss_pred HHHHcCCC
Confidence 88777643
No 229
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=45.00 E-value=1.8e+02 Score=25.00 Aligned_cols=70 Identities=14% Similarity=0.227 Sum_probs=47.2
Q ss_pred CceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCcee-------EEEeCCCCeEe---ecHHH
Q 025668 133 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFP-------FLIDPNTGVSM---YESGD 202 (249)
Q Consensus 133 k~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVP-------vLvDpntG~~L---~ES~a 202 (249)
..++.|..+.|-.|..=-..|+.+|..+..+..+. .+.+++. --|| ..|. +|..+ .=-.|
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d-----~~alK~~---~gIp~e~~SCHT~VI--~Gy~vEGHVPa~a 95 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDD-----FLALKRR---LGIPYEMQSCHTAVI--NGYYVEGHVPAEA 95 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCc-----HHHHHHh---cCCChhhccccEEEE--cCEEEeccCCHHH
Confidence 46899999999999999999999998877766532 2333332 1244 2333 24322 12678
Q ss_pred HHHHHHHHhC
Q 025668 203 IVNYLFQQYG 212 (249)
Q Consensus 203 Ii~YL~ekY~ 212 (249)
|.+.|+++..
T Consensus 96 I~~ll~~~pd 105 (149)
T COG3019 96 IARLLAEKPD 105 (149)
T ss_pred HHHHHhCCCC
Confidence 9999999883
No 230
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=44.59 E-value=28 Score=30.11 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=22.9
Q ss_pred CceEEE-EcCCChhhHHHH-------HHHHHcCCceEEEEcCCC
Q 025668 133 TRLQLF-EFEACPFCRRVR-------EAITELDLSVEVFPCPKG 168 (249)
Q Consensus 133 k~L~LY-s~e~SPyCrkVR-------~~L~ELgIpye~v~v~kg 168 (249)
+-+.|| +..+||.||... +.+.+.+-+++++-|..+
T Consensus 34 KvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D 77 (157)
T KOG2501|consen 34 KVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD 77 (157)
T ss_pred cEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC
Confidence 455565 445899998543 344444667888877654
No 231
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=42.83 E-value=63 Score=25.95 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=28.0
Q ss_pred CceEEEEcC--CChhhHHHH-------HHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeC
Q 025668 133 TRLQLFEFE--ACPFCRRVR-------EAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 191 (249)
Q Consensus 133 k~L~LYs~e--~SPyCrkVR-------~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDp 191 (249)
+.+.|+-+. +||.|..-. ..+.+.|+.+..+.++. .....+++++ .+ ..+|+|.|+
T Consensus 31 k~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~-~~~~~~~~~~-~~-~~~~~l~D~ 95 (154)
T PRK09437 31 QRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDK-PEKLSRFAEK-EL-LNFTLLSDE 95 (154)
T ss_pred CCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC-HHHHHHHHHH-hC-CCCeEEECC
Confidence 455555543 699996532 23334455444344332 1222344543 32 357888774
No 232
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=40.47 E-value=12 Score=30.71 Aligned_cols=55 Identities=13% Similarity=0.197 Sum_probs=27.2
Q ss_pred ceEEEEcCCChhhHHHHHHH----HHc-CCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEe
Q 025668 134 RLQLFEFEACPFCRRVREAI----TEL-DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L----~EL-gIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvD 190 (249)
.+.++.-.|||.|+..--+| ++. +|++.++..+........++ .++...||.++.
T Consensus 44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~l--t~g~~~IP~~I~ 103 (129)
T PF14595_consen 44 NILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYL--TNGGRSIPTFIF 103 (129)
T ss_dssp EEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTT--T-SS--SSEEEE
T ss_pred EEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHH--hCCCeecCEEEE
Confidence 56667777999998765544 333 56666665432211112222 277889998854
No 233
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=39.28 E-value=51 Score=27.24 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=21.2
Q ss_pred ceEEEEcCCChhhHHHHHHHH----Hc--CCceEEEEc
Q 025668 134 RLQLFEFEACPFCRRVREAIT----EL--DLSVEVFPC 165 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~----EL--gIpye~v~v 165 (249)
.|.+|....||||......|. +. +++++.+..
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~ 39 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLG 39 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEec
Confidence 377888889999965555444 44 566665543
No 234
>PTZ00102 disulphide isomerase; Provisional
Probab=37.86 E-value=50 Score=31.54 Aligned_cols=74 Identities=12% Similarity=0.128 Sum_probs=40.5
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCc--------eEEEEcCCCCCCCHHHHHhhCCCCceeEEE-eCCCCeE--ee----
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLS--------VEVFPCPKGSIRHREMVRRLGGKEQFPFLI-DPNTGVS--MY---- 198 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIp--------ye~v~v~kg~~~~re~l~~lnP~~qVPvLv-DpntG~~--L~---- 198 (249)
-+..|.-+||+.|+...-.++++.-. +-.++++..+. .. +...-..+|.++ -++++.. .+
T Consensus 378 vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~----~~-~~~~v~~~Pt~~~~~~~~~~~~~~~G~~ 452 (477)
T PTZ00102 378 VLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET----PL-EEFSWSAFPTILFVKAGERTPIPYEGER 452 (477)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc----ch-hcCCCcccCeEEEEECCCcceeEecCcC
Confidence 45555668999999988888766321 22234443221 11 223345688772 2223321 12
Q ss_pred cHHHHHHHHHHHhC
Q 025668 199 ESGDIVNYLFQQYG 212 (249)
Q Consensus 199 ES~aIi~YL~ekY~ 212 (249)
....|.++|.+...
T Consensus 453 ~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 453 TVEGFKEFVNKHAT 466 (477)
T ss_pred CHHHHHHHHHHcCC
Confidence 35668888877654
No 235
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=37.75 E-value=39 Score=24.93 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=32.5
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCc----eEEEEcCCCCCCCHHHHHhhCCCC--ceeEEE
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLS----VEVFPCPKGSIRHREMVRRLGGKE--QFPFLI 189 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIp----ye~v~v~kg~~~~re~l~~lnP~~--qVPvLv 189 (249)
.+.+|..++|+.|...+..++++.-. +.+..++... .++.. +..+-. .+|.++
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~--~~~~~-~~~~i~~~~~P~~~ 73 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD--FGRHL-EYFGLKEEDLPVIA 73 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh--hHHHH-HHcCCChhhCCEEE
Confidence 45566667899999999988886422 3333333221 33444 344455 899884
No 236
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=37.59 E-value=83 Score=27.42 Aligned_cols=52 Identities=13% Similarity=0.225 Sum_probs=32.4
Q ss_pred EEEEcCCChhhHHHHHHHHHcC-----CceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCe
Q 025668 136 QLFEFEACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 195 (249)
Q Consensus 136 ~LYs~e~SPyCrkVR~~L~ELg-----Ipye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~ 195 (249)
..|+-++|+.|+.+.-.|.++- +.|-.++++. .. ...+-..+|+|+.=.+|.
T Consensus 107 V~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~-------~~-~~~~i~~lPTlliyk~G~ 163 (192)
T cd02988 107 VHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ-------CI-PNYPDKNLPTILVYRNGD 163 (192)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH-------hH-hhCCCCCCCEEEEEECCE
Confidence 3445579999999988888774 3333333321 12 356778899884433564
No 237
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=37.52 E-value=78 Score=24.93 Aligned_cols=56 Identities=21% Similarity=0.282 Sum_probs=28.9
Q ss_pred CceEEEEc--CCChhhHHHHHHHHHc-------CCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeC
Q 025668 133 TRLQLFEF--EACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 191 (249)
Q Consensus 133 k~L~LYs~--e~SPyCrkVR~~L~EL-------gIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDp 191 (249)
+.+.|+-+ .+||.|.+....|.++ |+.+..+..+.. ...+++.++ .+ ..+|++.|+
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~-~~~~~~~~~-~~-~~~~~~~D~ 93 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSP-FSLRAWAEE-NG-LTFPLLSDF 93 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCH-HHHHHHHHh-cC-CCceEecCC
Confidence 45555443 5899998665544443 444333433321 123344433 33 357887763
No 238
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=37.45 E-value=71 Score=26.25 Aligned_cols=22 Identities=18% Similarity=0.702 Sum_probs=14.3
Q ss_pred eEEEEcCCChhhHHHHHHHHHc
Q 025668 135 LQLFEFEACPFCRRVREAITEL 156 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~EL 156 (249)
|..|...+||.|......|.++
T Consensus 29 ll~f~~t~Cp~c~~~~~~l~~l 50 (171)
T cd02969 29 VVMFICNHCPYVKAIEDRLNRL 50 (171)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 3444466899998765555554
No 239
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=35.65 E-value=33 Score=23.91 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=15.4
Q ss_pred cCCChhhHHHHHHHHHcC
Q 025668 140 FEACPFCRRVREAITELD 157 (249)
Q Consensus 140 ~e~SPyCrkVR~~L~ELg 157 (249)
.++||+|+.....|.++.
T Consensus 41 ~~~C~~C~~~~~~l~~~~ 58 (127)
T COG0526 41 APWCPPCRAEAPLLEELA 58 (127)
T ss_pred cCcCHHHHhhchhHHHHH
Confidence 679999999988887774
No 240
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=35.31 E-value=92 Score=28.24 Aligned_cols=31 Identities=13% Similarity=0.330 Sum_probs=17.9
Q ss_pred EEEEcCCChhhHHHHHHHHH-------cCCceEEEEcC
Q 025668 136 QLFEFEACPFCRRVREAITE-------LDLSVEVFPCP 166 (249)
Q Consensus 136 ~LYs~e~SPyCrkVR~~L~E-------LgIpye~v~v~ 166 (249)
..|...+||+|+.-.-.|.+ +|+.+.-++++
T Consensus 104 l~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 104 IVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred EEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 33445689999764433333 35555556654
No 241
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=35.15 E-value=63 Score=24.89 Aligned_cols=65 Identities=9% Similarity=0.188 Sum_probs=36.7
Q ss_pred ChhhHHHHHHHHHcCCceEEEEcCCCC---------------C--CCHHHHHhhCCCCceeEEEeCCCCeEeecHHHHHH
Q 025668 143 CPFCRRVREAITELDLSVEVFPCPKGS---------------I--RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (249)
Q Consensus 143 SPyCrkVR~~L~ELgIpye~v~v~kg~---------------~--~~re~l~~lnP~~qVPvLvDpntG~~L~ES~aIi~ 205 (249)
+-.+.+++..+++.|++++...++..+ + ...+.+++......+|+.+.+.......+..+|++
T Consensus 13 S~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~~~~Y~~~dg~~il~ 92 (96)
T cd05564 13 SILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDMMDYGMMNGEKVLK 92 (96)
T ss_pred HHHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcChHhcccCCHHHHHH
Confidence 446778888888888888776554211 0 11122333233456777755434455666666665
Q ss_pred HH
Q 025668 206 YL 207 (249)
Q Consensus 206 YL 207 (249)
..
T Consensus 93 ~~ 94 (96)
T cd05564 93 QA 94 (96)
T ss_pred HH
Confidence 54
No 242
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.08 E-value=50 Score=28.35 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=38.7
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCCc----eEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeEe
Q 025668 134 RLQLFEFEACPFCRRVREAITELDLS----VEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 197 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgIp----ye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~L 197 (249)
-|.-|+-+||-.|+.+.-.|+++.-+ +.++-++-+ ...+. ...+.-..||+++.=.+|+.+
T Consensus 64 VlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD--~~~el-a~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 64 VLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTD--EHPEL-AEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred EEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccc--cccch-HhhcceeeeeEEEEEECCEEe
Confidence 46778888999999999999998544 233333322 22333 345778889987321246543
No 243
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=34.49 E-value=33 Score=31.70 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=16.9
Q ss_pred eEEEEcCCChhhHHHHHHHHHc
Q 025668 135 LQLFEFEACPFCRRVREAITEL 156 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~EL 156 (249)
+.+-++++||||..-|++|-..
T Consensus 62 v~~igw~gCP~~A~~sW~L~~A 83 (249)
T PF06053_consen 62 VIFIGWEGCPYCAAESWALYIA 83 (249)
T ss_pred EEEEecccCccchhhHHHHHHH
Confidence 4444789999999999877544
No 244
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=34.26 E-value=3.1e+02 Score=25.67 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=50.8
Q ss_pred CceEEEEcCCChhhHHHHHHHHHcCC-ceEEEEcCCCCC-----------------CCHHHHHhhCCCCceeEEEeCCCC
Q 025668 133 TRLQLFEFEACPFCRRVREAITELDL-SVEVFPCPKGSI-----------------RHREMVRRLGGKEQFPFLIDPNTG 194 (249)
Q Consensus 133 k~L~LYs~e~SPyCrkVR~~L~ELgI-pye~v~v~kg~~-----------------~~re~l~~lnP~~qVPvLvDpntG 194 (249)
+.+++..- .||+..++.....++.- -|..+-+.+..+ ...+.+.++....++-++- .|-
T Consensus 87 ~gl~viDa-TCP~V~kv~~~v~~~~~~Gy~iiiiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~l~~~~~v~vvs--QTT 163 (280)
T TIGR00216 87 KGLEVIDA-TCPLVTKVHNAVKKYAKEGYHVILIGKKNHPEVIGTRGYAPDKAIVVETLEDLENFKVEDLLGVVS--QTT 163 (280)
T ss_pred CCCeEEeC-CCcccHHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcCCCEEEECCHHHHHhCCCCCcEEEEE--cCC
Confidence 46777766 79999999988877743 366655543211 2234443333333333332 256
Q ss_pred eEeecHHHHHHHHHHHhCCCCCC
Q 025668 195 VSMYESGDIVNYLFQQYGKGRSP 217 (249)
Q Consensus 195 ~~L~ES~aIi~YL~ekY~~~~~P 217 (249)
..+.+-.+|+++|.++|+....+
T Consensus 164 ~~~~~~~~i~~~l~~~~~~~~~~ 186 (280)
T TIGR00216 164 LSQEDTKEIVAELKARVPQKEVP 186 (280)
T ss_pred CcHHHHHHHHHHHHHhCCCcCCC
Confidence 66778889999999999654443
No 245
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=33.81 E-value=1e+02 Score=25.53 Aligned_cols=57 Identities=14% Similarity=0.268 Sum_probs=32.3
Q ss_pred CceEEEEcC--CChhhHHH--------HHHHHHcCCc-eEEEEcCCCCCCCHHHHHhhCCC-CceeEEEeC
Q 025668 133 TRLQLFEFE--ACPFCRRV--------REAITELDLS-VEVFPCPKGSIRHREMVRRLGGK-EQFPFLIDP 191 (249)
Q Consensus 133 k~L~LYs~e--~SPyCrkV--------R~~L~ELgIp-ye~v~v~kg~~~~re~l~~lnP~-~qVPvLvDp 191 (249)
+++.||.|+ +||.|..- ..-+..+|+. +-.+..+.. .....|..+ ... ..+|+|-|+
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~-~~~~~~~~~-~~~~~~f~lLsD~ 98 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDP-FVMKAWGKA-LGAKDKIRFLADG 98 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCH-HHHHHHHHh-hCCCCcEEEEECC
Confidence 468888877 59999764 3344445653 444444321 123344433 333 368999885
No 246
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=32.86 E-value=43 Score=27.86 Aligned_cols=38 Identities=11% Similarity=0.261 Sum_probs=22.6
Q ss_pred CCCCceEEEEcCCChhhHHHHHHH-------HHcCCceEEEEcCC
Q 025668 130 DSPTRLQLFEFEACPFCRRVREAI-------TELDLSVEVFPCPK 167 (249)
Q Consensus 130 ~pek~L~LYs~e~SPyCrkVR~~L-------~ELgIpye~v~v~k 167 (249)
.+..-|..++.++||+|++..... +.++-.|..+++..
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~ 66 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVH 66 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEe
Confidence 343345666778999998876643 22222566555543
No 247
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=32.65 E-value=1.3e+02 Score=25.82 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=34.2
Q ss_pred CceEEEEcC--CChhhHHH----HHHHHHc-CCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeC
Q 025668 133 TRLQLFEFE--ACPFCRRV----REAITEL-DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 191 (249)
Q Consensus 133 k~L~LYs~e--~SPyCrkV----R~~L~EL-gIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDp 191 (249)
++++||-|+ ++|-|.+- |..+.|. .+..+++-|..++...-..+++.++. ++|.|-|+
T Consensus 31 k~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L-~f~LLSD~ 95 (157)
T COG1225 31 KPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGL-TFPLLSDE 95 (157)
T ss_pred CcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC-CceeeECC
Confidence 489999987 57877443 3333333 24455666655544333333455544 49999985
No 248
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=31.77 E-value=83 Score=27.19 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=19.8
Q ss_pred CceEEEEc--CCChhhHHHHHHHH-------HcCCceEEEEcC
Q 025668 133 TRLQLFEF--EACPFCRRVREAIT-------ELDLSVEVFPCP 166 (249)
Q Consensus 133 k~L~LYs~--e~SPyCrkVR~~L~-------ELgIpye~v~v~ 166 (249)
+.+.||.+ .+||.|..-...|. .+|+.+..+.++
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D 68 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD 68 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 45667655 47999977544443 345555445544
No 249
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=31.20 E-value=92 Score=26.50 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=14.4
Q ss_pred CceEEEEc--CCChhhHHHHHHH
Q 025668 133 TRLQLFEF--EACPFCRRVREAI 153 (249)
Q Consensus 133 k~L~LYs~--e~SPyCrkVR~~L 153 (249)
+.+.||.| .+||.|.+-.-.|
T Consensus 32 k~vvl~F~p~~~cp~C~~el~~l 54 (187)
T TIGR03137 32 KWSVFFFYPADFTFVCPTELEDL 54 (187)
T ss_pred CEEEEEEECCCcCCcCHHHHHHH
Confidence 46777776 5899998744333
No 250
>PTZ00256 glutathione peroxidase; Provisional
Probab=30.88 E-value=1e+02 Score=26.00 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=36.1
Q ss_pred EEEEcCCChhhHHHHHHHHHc-------CCceEEEEcCC-C--C----CCCHHHHHhhCCCCceeEEEe--CCCCeEeec
Q 025668 136 QLFEFEACPFCRRVREAITEL-------DLSVEVFPCPK-G--S----IRHREMVRRLGGKEQFPFLID--PNTGVSMYE 199 (249)
Q Consensus 136 ~LYs~e~SPyCrkVR~~L~EL-------gIpye~v~v~k-g--~----~~~re~l~~lnP~~qVPvLvD--pntG~~L~E 199 (249)
.++.-.+||+|+.-.-.|.++ |+.+.-++++. . + ....+++++..+ -.+|++.| . +|. .
T Consensus 46 v~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~-~~fpv~~d~d~-~g~---~ 120 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFN-VDFPLFQKIEV-NGE---N 120 (183)
T ss_pred EEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcC-CCCCCceEEec-CCC---C
Confidence 344566899999755444433 44444455431 1 1 111233332232 35898843 3 232 1
Q ss_pred HHHHHHHHHHHhC
Q 025668 200 SGDIVNYLFQQYG 212 (249)
Q Consensus 200 S~aIi~YL~ekY~ 212 (249)
...+-.||.++.+
T Consensus 121 ~~~~~~~l~~~~~ 133 (183)
T PTZ00256 121 THEIYKYLRRNSE 133 (183)
T ss_pred CCHHHHHHHhhCC
Confidence 3456677777653
No 251
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=30.48 E-value=65 Score=26.32 Aligned_cols=49 Identities=8% Similarity=0.159 Sum_probs=29.7
Q ss_pred EEcCCChhhHHHHHHHHHcCCc----eEEEEcCCCCCCCHHHHHhhCCCCceeEEE
Q 025668 138 FEFEACPFCRRVREAITELDLS----VEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (249)
Q Consensus 138 Ys~e~SPyCrkVR~~L~ELgIp----ye~v~v~kg~~~~re~l~~lnP~~qVPvLv 189 (249)
|+-+|||.|+..-.+|.++--. +.+..|+-+ .-+++ .+...-..+|..+
T Consensus 21 F~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVD--ev~dv-a~~y~I~amPtfv 73 (114)
T cd02986 21 FGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVD--KVPVY-TQYFDISYIPSTI 73 (114)
T ss_pred EeCCCChhHHHHHHHHHHHHHHccCceEEEEEecc--ccHHH-HHhcCceeCcEEE
Confidence 4556999999999999888532 223333322 23444 3455555678653
No 252
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=30.09 E-value=1.3e+02 Score=25.10 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=30.6
Q ss_pred CceEEEEcC--CChhhHHHHHHHHHcC---CceEEEEcCCCC-CCCHHHHHhhCCCCceeEEEeC
Q 025668 133 TRLQLFEFE--ACPFCRRVREAITELD---LSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLIDP 191 (249)
Q Consensus 133 k~L~LYs~e--~SPyCrkVR~~L~ELg---Ipye~v~v~kg~-~~~re~l~~lnP~~qVPvLvDp 191 (249)
+.+.|+.|+ +||.|.+-.-.|.++- -.++++-|..+. ....+|.. ..+...+|+|.|+
T Consensus 45 k~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~-~~~~~~~~~lsD~ 108 (167)
T PRK00522 45 KRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCG-AEGLENVITLSDF 108 (167)
T ss_pred CEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHH-hCCCCCceEeecC
Confidence 455565554 4999987554444431 134454444332 22345554 3444447888874
No 253
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.91 E-value=65 Score=29.37 Aligned_cols=24 Identities=29% Similarity=0.778 Sum_probs=16.6
Q ss_pred ceEEEEcCCChhhH----HHHHHHHHcC
Q 025668 134 RLQLFEFEACPFCR----RVREAITELD 157 (249)
Q Consensus 134 ~L~LYs~e~SPyCr----kVR~~L~ELg 157 (249)
.|.+|+-..||+|. +...++.+.+
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka~~~~~ 34 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKALAEYP 34 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHHHHhcC
Confidence 56777778999994 4455555555
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.53 E-value=1.9e+02 Score=27.61 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=48.8
Q ss_pred ceEEEEcCCChhhHHHHHHHHHcCC----ceEE--EEcCCCCCCCHHHHHhhCCCCceeEEEeCCCCeE------eecHH
Q 025668 134 RLQLFEFEACPFCRRVREAITELDL----SVEV--FPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS------MYESG 201 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L~ELgI----pye~--v~v~kg~~~~re~l~~lnP~~qVPvLvDpntG~~------L~ES~ 201 (249)
-+++|+-++|+.|+...-.|+.+-- .|.+ +||+. .+. +....+-..||+++-=-+|.- +---.
T Consensus 46 VlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~----~p~-vAaqfgiqsIPtV~af~dGqpVdgF~G~qPes 120 (304)
T COG3118 46 VLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA----EPM-VAAQFGVQSIPTVYAFKDGQPVDGFQGAQPES 120 (304)
T ss_pred eEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc----chh-HHHHhCcCcCCeEEEeeCCcCccccCCCCcHH
Confidence 4677778899999999998887733 3444 45553 234 345677888997743124432 22345
Q ss_pred HHHHHHHHHhCC
Q 025668 202 DIVNYLFQQYGK 213 (249)
Q Consensus 202 aIi~YL~ekY~~ 213 (249)
.|-++|++.-+.
T Consensus 121 qlr~~ld~~~~~ 132 (304)
T COG3118 121 QLRQFLDKVLPA 132 (304)
T ss_pred HHHHHHHHhcCh
Confidence 788998876655
No 255
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=29.48 E-value=1.3e+02 Score=24.93 Aligned_cols=58 Identities=24% Similarity=0.329 Sum_probs=29.3
Q ss_pred CceEEEEc--CCChhhHHHHHHHHH-------cCCceEEEEcCCCCCCCHHHHHhhC-----CCCceeEEEeC
Q 025668 133 TRLQLFEF--EACPFCRRVREAITE-------LDLSVEVFPCPKGSIRHREMVRRLG-----GKEQFPFLIDP 191 (249)
Q Consensus 133 k~L~LYs~--e~SPyCrkVR~~L~E-------LgIpye~v~v~kg~~~~re~l~~ln-----P~~qVPvLvDp 191 (249)
+.+.|+-+ .+||.|......|.+ .|+.+..+.++.. .....+..... ....+|++.|+
T Consensus 30 k~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~-~~~~~~~~~~~~~~~~~~~~f~~l~D~ 101 (173)
T cd03015 30 KWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSH-FSHLAWRNTPRKEGGLGKINFPLLADP 101 (173)
T ss_pred CEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCH-HHHHHHHHhhhhhCCccCcceeEEECC
Confidence 45666654 579999875554433 3555444444321 11122332210 12357888874
No 256
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=29.34 E-value=37 Score=30.43 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=28.6
Q ss_pred CCceeEEEeCCCCeEeecHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHhhh
Q 025668 182 KEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRSPSTGLLERCSTFVCKNLIFCRS 238 (249)
Q Consensus 182 ~~qVPvLvDpntG~~L~ES~aIi~YL~ekY~~~~~P~~gll~st~~~~~~a~~~~~~ 238 (249)
...+|.++|| .|. ...||...|+....-..-..+..+..+-.|..|++.
T Consensus 32 ~~r~PLiIDP-q~q-------a~~wi~~~~~~~l~v~~~~~~~~~~~le~air~G~~ 80 (228)
T PF12781_consen 32 SRRWPLIIDP-QGQ-------ANKWIKNMYKNDLEVTSFSDSNFLKQLENAIRFGKP 80 (228)
T ss_dssp -SSEEEEEST-TTC-------HHHHHHHHCCCCEEEEETTSTCHHHHHHHHHHCT-E
T ss_pred cCCCceEECC-chH-------HHHHHHHhhhhcccccccchHhHHHHHHHHHHcCCe
Confidence 4689999999 566 689999888754211001112345555666665553
No 257
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=27.86 E-value=1.3e+02 Score=26.40 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=30.8
Q ss_pred EEcCCChhhHHHHH---HHHHcCCce------EEEEcCCCCCCCHHHHH---hhCCCCcee---EEEeC
Q 025668 138 FEFEACPFCRRVRE---AITELDLSV------EVFPCPKGSIRHREMVR---RLGGKEQFP---FLIDP 191 (249)
Q Consensus 138 Ys~e~SPyCrkVR~---~L~ELgIpy------e~v~v~kg~~~~re~l~---~lnP~~qVP---vLvDp 191 (249)
|.-.+||.|+.-.- .|...|+++ ..++.+...+....|++ +.+ ....| ++.|+
T Consensus 66 ~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~-~~~~P~~~vllD~ 133 (184)
T TIGR01626 66 HIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKG-KKENPWSQVVLDD 133 (184)
T ss_pred EEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHh-cccCCcceEEECC
Confidence 33348999976554 445557888 66776654444445543 111 22345 88885
No 258
>PRK13599 putative peroxiredoxin; Provisional
Probab=27.67 E-value=1.2e+02 Score=26.70 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=14.1
Q ss_pred CceEEEEcC--CChhhHHHHHHHH
Q 025668 133 TRLQLFEFE--ACPFCRRVREAIT 154 (249)
Q Consensus 133 k~L~LYs~e--~SPyCrkVR~~L~ 154 (249)
+.+.||.++ +||.|..-...|.
T Consensus 29 k~vVL~~~pa~~tpvCt~El~~l~ 52 (215)
T PRK13599 29 KWFVLFSHPADFTPVCTTEFVEFA 52 (215)
T ss_pred CeEEEEEeCCCCCCcCHHHHHHHH
Confidence 456677765 7999987444333
No 259
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=27.56 E-value=1.5e+02 Score=25.72 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=12.8
Q ss_pred CceEEEEc--CCChhhHHHH
Q 025668 133 TRLQLFEF--EACPFCRRVR 150 (249)
Q Consensus 133 k~L~LYs~--e~SPyCrkVR 150 (249)
+.+.||.| .+||.|..-.
T Consensus 32 k~vvL~F~P~~~~p~C~~el 51 (187)
T PRK10382 32 RWSVFFFYPADFTFVCPTEL 51 (187)
T ss_pred CeEEEEEECCCCCCcCHHHH
Confidence 46777766 5799998733
No 260
>PLN02412 probable glutathione peroxidase
Probab=27.27 E-value=1.2e+02 Score=25.31 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=14.6
Q ss_pred CceEE-EEcCCChhhHHHHHHHHHc
Q 025668 133 TRLQL-FEFEACPFCRRVREAITEL 156 (249)
Q Consensus 133 k~L~L-Ys~e~SPyCrkVR~~L~EL 156 (249)
+.+.| |...+||+|++-...|.++
T Consensus 30 k~vlv~f~a~~C~~c~~e~~~l~~l 54 (167)
T PLN02412 30 KVLLIVNVASKCGLTDSNYKELNVL 54 (167)
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHH
Confidence 44444 4467999999754444443
No 261
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=27.19 E-value=59 Score=22.88 Aligned_cols=33 Identities=9% Similarity=-0.054 Sum_probs=20.3
Q ss_pred eEEEEcCCChhhHHHHHHHHHcCCceEEEEcCC
Q 025668 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK 167 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~k 167 (249)
.+||....-.-+..++..|++.||++...+-..
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~ 33 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHM 33 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S---
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCcc
Confidence 367877666678999999999999998876543
No 262
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=26.88 E-value=2.1e+02 Score=29.02 Aligned_cols=78 Identities=21% Similarity=0.245 Sum_probs=44.8
Q ss_pred eEEEEcCCChhhHHH-------HHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEE-EeCCCCe-----EeecHH
Q 025668 135 LQLFEFEACPFCRRV-------REAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFL-IDPNTGV-----SMYESG 201 (249)
Q Consensus 135 L~LYs~e~SPyCrkV-------R~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvL-vDpntG~-----~L~ES~ 201 (249)
|..|.-+||-.|.+. -..|.+.+=+..+..|+--. ..+ +.....-..+|+| +..|+.. ...+..
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~--~~~-~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~ad 122 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATE--ESD-LASKYEVRGYPTLKIFRNGRSAQDYNGPREAD 122 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecch--hhh-hHhhhcCCCCCeEEEEecCCcceeccCcccHH
Confidence 455556788888653 33445544344444333211 122 2234556668888 4443221 255789
Q ss_pred HHHHHHHHHhCCCC
Q 025668 202 DIVNYLFQQYGKGR 215 (249)
Q Consensus 202 aIi~YL~ekY~~~~ 215 (249)
.|+.||.++.+...
T Consensus 123 gIv~wl~kq~gPa~ 136 (493)
T KOG0190|consen 123 GIVKWLKKQSGPAS 136 (493)
T ss_pred HHHHHHHhccCCCc
Confidence 99999999988654
No 263
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=26.85 E-value=59 Score=23.59 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=15.2
Q ss_pred ceEEEEcCCChhhHHHHHHH
Q 025668 134 RLQLFEFEACPFCRRVREAI 153 (249)
Q Consensus 134 ~L~LYs~e~SPyCrkVR~~L 153 (249)
-|..++-++|++|++....+
T Consensus 20 vlv~f~a~wC~~C~~l~~~~ 39 (82)
T PF13899_consen 20 VLVDFGADWCPPCKKLEREV 39 (82)
T ss_dssp EEEEEETTTTHHHHHHHHHT
T ss_pred EEEEEECCCCHhHHHHHHHH
Confidence 45666788999999876654
No 264
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=26.43 E-value=1.1e+02 Score=24.76 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=13.9
Q ss_pred CceEE-EEcCCChhhHHHHHHHHHc
Q 025668 133 TRLQL-FEFEACPFCRRVREAITEL 156 (249)
Q Consensus 133 k~L~L-Ys~e~SPyCrkVR~~L~EL 156 (249)
+.+.| |...+|| |++-.-.|.++
T Consensus 23 k~vvl~fwatwC~-C~~e~p~l~~l 46 (152)
T cd00340 23 KVLLIVNVASKCG-FTPQYEGLEAL 46 (152)
T ss_pred CEEEEEEEcCCCC-chHHHHHHHHH
Confidence 34433 4456899 98765555554
No 265
>PRK09266 hypothetical protein; Provisional
Probab=25.85 E-value=1.2e+02 Score=27.14 Aligned_cols=67 Identities=10% Similarity=0.105 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCC-CCceeEEEeCCCCeEeecHHHHHHHHHHHhCCCC
Q 025668 147 RRVREAITELDLSVEVFPCPKGSIRHREMVRRLGG-KEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKGR 215 (249)
Q Consensus 147 rkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP-~~qVPvLvDpntG~~L~ES~aIi~YL~ekY~~~~ 215 (249)
+.+...+..+|+++++..+...+-...+.+.-.|- .+-+|+... ++..+.....|.+.|.+.|..+.
T Consensus 195 ~~ll~~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i--~~~~~~~~~~~~~~l~~~~~~~~ 262 (266)
T PRK09266 195 ALLQRGLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAI--DDVALPDSHALLELLRRAYEAEP 262 (266)
T ss_pred HHHHHHHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEE--CCEECCCCchHHHHHHHHHHhcC
Confidence 44555677889999998887544333222222343 578898865 45665545788888988886543
No 266
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=25.81 E-value=2.6e+02 Score=23.51 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=17.4
Q ss_pred EEEEcCCChhhHHHHHHHHHcC
Q 025668 136 QLFEFEACPFCRRVREAITELD 157 (249)
Q Consensus 136 ~LYs~e~SPyCrkVR~~L~ELg 157 (249)
.=|+-+||+.|+..-.+|+++.
T Consensus 28 vdF~A~WCgpCk~m~p~l~~la 49 (142)
T PLN00410 28 IRFGHDWDETCMQMDEVLASVA 49 (142)
T ss_pred EEEECCCChhHHHHHHHHHHHH
Confidence 3345579999999998888874
No 267
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=25.63 E-value=1.6e+02 Score=23.07 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=30.7
Q ss_pred CceEEEEcC--CChhhHHHHHHHHHc-----CCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeC
Q 025668 133 TRLQLFEFE--ACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 191 (249)
Q Consensus 133 k~L~LYs~e--~SPyCrkVR~~L~EL-----gIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDp 191 (249)
+++.|+.+. +||.|++-...|.++ |+.+..+.++. .....++.. ..+...+|++.|+
T Consensus 27 k~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~-~~~~~~~~~-~~~~~~~~~l~D~ 90 (143)
T cd03014 27 KVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADL-PFAQKRWCG-AEGVDNVTTLSDF 90 (143)
T ss_pred CeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCC-HHHHHHHHH-hcCCCCceEeecC
Confidence 456666654 489998876666444 44333344332 112234443 3333468888774
No 268
>PRK13190 putative peroxiredoxin; Provisional
Probab=25.26 E-value=1.7e+02 Score=25.34 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=13.9
Q ss_pred CceEEEEc--CCChhhHHHHHHHH
Q 025668 133 TRLQLFEF--EACPFCRRVREAIT 154 (249)
Q Consensus 133 k~L~LYs~--e~SPyCrkVR~~L~ 154 (249)
+.+.|+.| .+||.|..-...|.
T Consensus 28 k~vvL~~~p~~~cp~C~~El~~l~ 51 (202)
T PRK13190 28 KWVLLFSHPADFTPVCTTEFIAFS 51 (202)
T ss_pred CEEEEEEEcCCCCCCCHHHHHHHH
Confidence 45666544 47999976544444
No 269
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=24.66 E-value=22 Score=29.66 Aligned_cols=67 Identities=19% Similarity=0.135 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEEEeCC-CCeEeecHHHHHHHHHHH
Q 025668 144 PFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPN-TGVSMYESGDIVNYLFQQ 210 (249)
Q Consensus 144 PyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvLvDpn-tG~~L~ES~aIi~YL~ek 210 (249)
-|-..+|+++++.|++.+.+..+.......+......=.+.+|.++|-= .-...-|...||.||.++
T Consensus 23 kfP~LakEl~e~~g~~I~~~r~~~~~~l~~e~~~~~~~sGy~PtViD~lrRC~T~EEALEVInylek~ 90 (128)
T PF09868_consen 23 KFPALAKELEEEEGISIEGYRLDEEQVLEEEEEEPDDFSGYNPTVIDYLRRCKTDEEALEVINYLEKR 90 (128)
T ss_pred HhHHHHHHHhccCCCceeeeechhhhhhhhccccCCCccCCCChHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 3567889999999998887665432110001000122257789887720 113444778899999975
No 270
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=24.60 E-value=1.4e+02 Score=21.64 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=27.5
Q ss_pred EEEEcCCChhhHHHHHHHHHcCCceEEEEcCC
Q 025668 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPK 167 (249)
Q Consensus 136 ~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~k 167 (249)
-+..|+...+..++..+|.+.|+++++++++.
T Consensus 4 ~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~ 35 (73)
T PF11823_consen 4 YLITFPSTHDAMKAEKLLKKNGIPVRLIPTPR 35 (73)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCcEEEeCCCh
Confidence 45567778899999999999999999999875
No 271
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=24.45 E-value=84 Score=24.81 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHcCCceEEEEcC
Q 025668 145 FCRRVREAITELDLSVEVFPCP 166 (249)
Q Consensus 145 yCrkVR~~L~ELgIpye~v~v~ 166 (249)
-+.+++..+++.|++++..-++
T Consensus 16 la~km~~~a~~~gi~~~i~a~~ 37 (99)
T cd05565 16 LANALNKGAKERGVPLEAAAGA 37 (99)
T ss_pred HHHHHHHHHHHCCCcEEEEEee
Confidence 4688999999999998876553
No 272
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=23.68 E-value=1.6e+02 Score=23.79 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=14.3
Q ss_pred eEEEEcCCChhhHHHHHHHHHc
Q 025668 135 LQLFEFEACPFCRRVREAITEL 156 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~EL 156 (249)
+..+...+||+|++-...|.++
T Consensus 26 vv~~~as~C~~c~~~~~~l~~l 47 (153)
T TIGR02540 26 LVVNVASECGFTDQNYRALQEL 47 (153)
T ss_pred EEEEeCCCCCchhhhHHHHHHH
Confidence 4555567899998766544443
No 273
>PRK13191 putative peroxiredoxin; Provisional
Probab=23.60 E-value=1.7e+02 Score=25.81 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=19.7
Q ss_pred CceEEEEcC--CChhhHHHHHHHHH-------cCCceEEEEcC
Q 025668 133 TRLQLFEFE--ACPFCRRVREAITE-------LDLSVEVFPCP 166 (249)
Q Consensus 133 k~L~LYs~e--~SPyCrkVR~~L~E-------LgIpye~v~v~ 166 (249)
+.+.||.|+ +||.|..-...|.+ +|+.+.-+.++
T Consensus 34 K~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~D 76 (215)
T PRK13191 34 RWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVD 76 (215)
T ss_pred CcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence 456766554 79999875444433 35544444443
No 274
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=23.18 E-value=1.4e+02 Score=25.51 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=19.1
Q ss_pred ChhhHHHHHHHHHcCCceEEEEcC
Q 025668 143 CPFCRRVREAITELDLSVEVFPCP 166 (249)
Q Consensus 143 SPyCrkVR~~L~ELgIpye~v~v~ 166 (249)
-|++.+++..|+++|++|+..-+.
T Consensus 13 ~~~~~~a~~~L~~~gi~~~~~V~s 36 (150)
T PF00731_consen 13 LPIAEEAAKTLEEFGIPYEVRVAS 36 (150)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEe
Confidence 478999999999999999987664
No 275
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=22.94 E-value=1.7e+02 Score=27.92 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCceEEE-EcCCCCCC---------CHHHHHhhCCCCceeEEE
Q 025668 147 RRVREAITELDLSVEVF-PCPKGSIR---------HREMVRRLGGKEQFPFLI 189 (249)
Q Consensus 147 rkVR~~L~ELgIpye~v-~v~kg~~~---------~re~l~~lnP~~qVPvLv 189 (249)
.+|-++..++||.|.++ .|++++.. .-..+++.+|..+|=+|+
T Consensus 103 ~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~iEvL~ 155 (306)
T COG0320 103 ERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLT 155 (306)
T ss_pred HHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCceEEEeC
Confidence 58889999999999886 35443321 113456789999999986
No 276
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.01 E-value=1e+02 Score=23.37 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHcCCceEEEEcC
Q 025668 144 PFCRRVREAITELDLSVEVFPCP 166 (249)
Q Consensus 144 PyCrkVR~~L~ELgIpye~v~v~ 166 (249)
.|++|+..+|++.|++|+..+-.
T Consensus 16 GF~rk~L~I~E~~~is~Eh~PSG 38 (76)
T cd04911 16 GFGRKLLSILEDNGISYEHMPSG 38 (76)
T ss_pred cHHHHHHHHHHHcCCCEeeecCC
Confidence 58999999999999999987643
No 277
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=21.26 E-value=4.9e+02 Score=21.73 Aligned_cols=70 Identities=14% Similarity=0.195 Sum_probs=41.7
Q ss_pred CceEEEEcCCChhhHHHHHHHHHcCCceEEEEcCCCCCCCHHHHHhhCCCCceeEE--EeCCCCeEe-ecHHH-HHHH
Q 025668 133 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFL--IDPNTGVSM-YESGD-IVNY 206 (249)
Q Consensus 133 k~L~LYs~e~SPyCrkVR~~L~ELgIpye~v~v~kg~~~~re~l~~lnP~~qVPvL--vDpntG~~L-~ES~a-Ii~Y 206 (249)
+.+++.....-.--..++.++.++++.+...++... ....+.+..+-..+|++ +|+ +|..+ .+-.. |.+|
T Consensus 64 ~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~---~~~~l~~~y~v~~iPt~vlId~-~G~Vv~~~~~~~i~~~ 137 (146)
T cd03008 64 AQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDE---FRRELEAQFSVEELPTVVVLKP-DGDVLAANAVDEILRL 137 (146)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHCCCCceeecccch---HHHHHHHHcCCCCCCEEEEECC-CCcEEeeChHHHHHHH
Confidence 346666654333446788999999988766555421 12234456777789976 676 46443 33333 3444
No 278
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=20.90 E-value=2e+02 Score=29.24 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=16.3
Q ss_pred CceEEE-EcCCChhhHHHHHHHHHc
Q 025668 133 TRLQLF-EFEACPFCRRVREAITEL 156 (249)
Q Consensus 133 k~L~LY-s~e~SPyCrkVR~~L~EL 156 (249)
+++.|+ .-.|||.|++..-.|.++
T Consensus 57 KpVvV~FWATWCppCk~emP~L~eL 81 (521)
T PRK14018 57 KPTLIKFWASWCPLCLSELGETEKW 81 (521)
T ss_pred CEEEEEEEcCCCHHHHHHHHHHHHH
Confidence 444333 345999999987777665
No 279
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=20.85 E-value=2e+02 Score=27.99 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=42.2
Q ss_pred EEEEcCCChhhHHHHHHHHHcCCc-----------eEEEEcCCCCCCCHHHHHhhCCCCceeEE-EeCCCCeEee-c---
Q 025668 136 QLFEFEACPFCRRVREAITELDLS-----------VEVFPCPKGSIRHREMVRRLGGKEQFPFL-IDPNTGVSMY-E--- 199 (249)
Q Consensus 136 ~LYs~e~SPyCrkVR~~L~ELgIp-----------ye~v~v~kg~~~~re~l~~lnP~~qVPvL-vDpntG~~L~-E--- 199 (249)
.=|+-+||||+++..-+++|.--. +-.++|++. +.+...+--.+.|.| +.. .|..|. |
T Consensus 18 v~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e-----~~ia~ky~I~KyPTlKvfr-nG~~~~rEYRg 91 (375)
T KOG0912|consen 18 VNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE-----DDIADKYHINKYPTLKVFR-NGEMMKREYRG 91 (375)
T ss_pred eeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh-----hHHhhhhccccCceeeeee-ccchhhhhhcc
Confidence 345567999999999988876321 333455543 223334445567877 443 365554 2
Q ss_pred ---HHHHHHHHHHHhC
Q 025668 200 ---SGDIVNYLFQQYG 212 (249)
Q Consensus 200 ---S~aIi~YL~ekY~ 212 (249)
-.|+++|+.++-.
T Consensus 92 ~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 92 QRSVEALIEFIEKQLS 107 (375)
T ss_pred chhHHHHHHHHHHHhc
Confidence 3567788776543
No 280
>PRK15000 peroxidase; Provisional
Probab=20.79 E-value=2.4e+02 Score=24.45 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=16.2
Q ss_pred CCceEEEEcC--CChhhHHHHHHHH
Q 025668 132 PTRLQLFEFE--ACPFCRRVREAIT 154 (249)
Q Consensus 132 ek~L~LYs~e--~SPyCrkVR~~L~ 154 (249)
.+.+.|+.|+ +||-|..-...|.
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~ 58 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFD 58 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHH
Confidence 4578888887 5999987544443
No 281
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=20.21 E-value=97 Score=27.58 Aligned_cols=23 Identities=26% Similarity=0.626 Sum_probs=17.6
Q ss_pred eEEEEcCCChhhHHHHHHHHHcC
Q 025668 135 LQLFEFEACPFCRRVREAITELD 157 (249)
Q Consensus 135 L~LYs~e~SPyCrkVR~~L~ELg 157 (249)
++||+.++|+-|-.+=..|.++.
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~ 24 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELA 24 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHH
T ss_pred eeEecCCCCCCCcHHHHHHHHhh
Confidence 79999999999988888888884
Done!