Query 025669
Match_columns 249
No_of_seqs 17 out of 19
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 08:15:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025669.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025669hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4544 Uncharacterized conser 48.4 28 0.0006 30.4 4.0 69 109-178 43-123 (144)
2 PF12249 AftA_C: Arabinofurano 46.6 7.3 0.00016 34.8 0.3 17 194-210 64-81 (178)
3 cd00043 CYCLIN Cyclin box fold 46.3 64 0.0014 21.6 4.9 28 174-203 41-68 (88)
4 cd03409 Chelatase_Class_II Cla 40.3 24 0.00053 25.7 2.2 39 139-177 59-98 (101)
5 COG4591 LolE ABC-type transpor 38.3 1.1E+02 0.0025 29.7 6.9 27 82-108 237-264 (408)
6 COG3978 Acetolactate synthase 27.8 57 0.0012 26.4 2.5 39 52-90 26-72 (86)
7 PTZ00443 Thioredoxin domain-co 26.5 3.6E+02 0.0078 24.1 7.6 69 73-157 126-199 (224)
8 cd05135 RasGAP_RASAL Ras GTPas 25.6 3.2E+02 0.0069 26.1 7.5 74 101-198 143-216 (333)
9 PF03745 DUF309: Domain of unk 21.7 1.8E+02 0.004 21.1 4.1 30 81-119 21-50 (62)
10 PF08009 CDP-OH_P_tran_2: CDP- 19.8 2.6E+02 0.0056 19.4 4.2 33 142-188 3-35 (39)
No 1
>KOG4544 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.37 E-value=28 Score=30.36 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=42.2
Q ss_pred HHHHHH--HHHHHHHHHHHHhhhhchhhhhhhccceeeeeh-hHHHHHH---------HHHHHHHHHHhhCcccccCCCc
Q 025669 109 ILDLFM--AVVKYLSVPLLAVSSLSEMSYCAHEKKLFLVPV-PLLIGMA---------ISDLLRETILDLSPLLKDAEVP 176 (249)
Q Consensus 109 lL~L~~--~VvKwl~VpvfavSsLSEmsYc~~~nKel~IPi-gLl~G~~---------vAg~LKETalELs~~lee~~~p 176 (249)
-++++. +-++|..--...+.-++-.+|-.+.|+..+||| ||..+|- --.-++|||.+|-+-. |.-+|
T Consensus 43 A~~Ia~~RE~f~w~~~f~~~avv~laa~~~~~Kr~~~liPIvPL~f~~gYqyd~ayGd~l~ri~etA~~lLete-~ell~ 121 (144)
T KOG4544|consen 43 AFKIAEEREKFNWIACFGSLAVVLLAASSFHHKRLLHLIPIVPLAFFIGYQYDFAYGDQLKRISETATQLLETE-DELLP 121 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchheechhhHhhhhheeecccchHHHHHHHHHHHHHhCH-HHhcc
Confidence 344443 456676544333334444567788888888886 4544442 1235789999998776 44467
Q ss_pred hH
Q 025669 177 WH 178 (249)
Q Consensus 177 wh 178 (249)
|+
T Consensus 122 lP 123 (144)
T KOG4544|consen 122 LP 123 (144)
T ss_pred CC
Confidence 76
No 2
>PF12249 AftA_C: Arabinofuranosyltransferase A C terminal; InterPro: IPR020959 The arabinofuranosyltransferase enzyme AftA is involved in cell wall arabinan biosynthesis in bacteria []. It catalyses the addition of the first key arabinofuranosyl residue from the sugar donor beta-D-arabinofuranosyl-1-monophosphoryldecaprenol to the galactan domain of the cell wall, thus priming the galactan for further elaboration by the arabinofuranosyltransferases. As this enzyme is important for cell growth and is found in some important pathogens, such as Mycobacterium tuberculosis, it represents a potential target for the devlopment of new antibacterial drugs. This entry represents the C-terminal domain of AftA.; GO: 0016757 transferase activity, transferring glycosyl groups, 0044038 cell wall macromolecule biosynthetic process, 0005886 plasma membrane, 0016021 integral to membrane
Probab=46.56 E-value=7.3 Score=34.80 Aligned_cols=17 Identities=53% Similarity=1.370 Sum_probs=15.0
Q ss_pred CCCCCcc-cccceecchh
Q 025669 194 PYYPYWG-RLFIPHFANG 210 (249)
Q Consensus 194 py~p~wg-riflpHfANG 210 (249)
.|||||| |.+-+|-||=
T Consensus 64 syyPY~gFQalTsHYANP 81 (178)
T PF12249_consen 64 SYYPYWGFQALTSHYANP 81 (178)
T ss_pred EecccccccccchhhcCc
Confidence 4899999 8899999993
No 3
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=46.30 E-value=64 Score=21.56 Aligned_cols=28 Identities=18% Similarity=0.263 Sum_probs=23.5
Q ss_pred CCchHHHHHHHHHHHhhcCCCCCCCccccc
Q 025669 174 EVPWHLIAIGIFFTVIKLPGPYYPYWGRLF 203 (249)
Q Consensus 174 ~~pwhLl~i~~fF~liK~~gpy~p~wgrif 203 (249)
+.+.++++++|+|...|+-+. |.|-+-+
T Consensus 41 ~~~~~~ia~a~l~lA~k~~~~--~~~~~~~ 68 (88)
T cd00043 41 GRSPSLVAAAALYLAAKVEEI--PPWLKDL 68 (88)
T ss_pred cCChHHHHHHHHHHHHHHcCC--CCCHHHH
Confidence 688999999999999999998 6555543
No 4
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=40.26 E-value=24 Score=25.71 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=33.4
Q ss_pred ccceeeeehhHHHHHHHH-HHHHHHHHhhCcccccCCCch
Q 025669 139 EKKLFLVPVPLLIGMAIS-DLLRETILDLSPLLKDAEVPW 177 (249)
Q Consensus 139 ~nKel~IPigLl~G~~vA-g~LKETalELs~~lee~~~pw 177 (249)
.++..++|+.+.-|.-+. |+..|.....-..+|..|.+|
T Consensus 59 ~~~vvvvPl~~~~g~h~~~di~~~~~~~~~~~~~~~g~~~ 98 (101)
T cd03409 59 YQRVVIVPLAPVSGDEVFYDIDSEIGLVRKQVGEPLGEKL 98 (101)
T ss_pred CCeEEEEeCccccChhhHHHHHHHHHHHHHhccccccccc
Confidence 378999999999888888 899888887777888888887
No 5
>COG4591 LolE ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]
Probab=38.35 E-value=1.1e+02 Score=29.71 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=21.9
Q ss_pred HHHHH-hcCCCcccccchhhHHHHHHHH
Q 025669 82 VRKLW-DNSPQPVKSFPWNRALENFIQL 108 (249)
Q Consensus 82 ~~kLw-e~~PePVK~FPW~KA~~~fiq~ 108 (249)
++++- +..|++++--+|+..-.+|.+-
T Consensus 237 ~~~~~~~~~~~~~~~~~W~e~n~~~~~a 264 (408)
T COG4591 237 KRKLEIELLPQGLKAKDWREQNGEFFSA 264 (408)
T ss_pred HHHHHhhccCCCeEEechHHHhHHHHHH
Confidence 55666 6689999999999988888764
No 6
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=27.77 E-value=57 Score=26.39 Aligned_cols=39 Identities=31% Similarity=0.498 Sum_probs=24.3
Q ss_pred cccccccccccccCCCCCC--------CccchHHHHHHHHHHHhcCC
Q 025669 52 AKGNICCAMNMAAGQSGDP--------EKLNLDQLVNRVRKLWDNSP 90 (249)
Q Consensus 52 ~r~~~~~~mn~t~~qs~eP--------~Kv~~~~~i~~~~kLwe~~P 90 (249)
.|.---|+||||+..-++- +.=.++-+-+.-+||||..-
T Consensus 26 hRGF~vcamnmt~~~da~~~nie~tV~s~R~~~lL~~QLeKl~Dv~~ 72 (86)
T COG3978 26 HRGFRVCAMNMTAAVDAGNANIELTVDSDRSVDLLTSQLEKLYDVAH 72 (86)
T ss_pred hcCeEEEEeecccccccccceEEEEEcCCCChHHHHHHHHHHcccee
Confidence 4556679999999863321 11123445666889998653
No 7
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=26.50 E-value=3.6e+02 Score=24.12 Aligned_cols=69 Identities=13% Similarity=0.224 Sum_probs=43.9
Q ss_pred cchHHHHHHHHHHHh-c----CCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhhhccceeeeeh
Q 025669 73 LNLDQLVNRVRKLWD-N----SPQPVKSFPWNRALENFIQLILDLFMAVVKYLSVPLLAVSSLSEMSYCAHEKKLFLVPV 147 (249)
Q Consensus 73 v~~~~~i~~~~kLwe-~----~PePVK~FPW~KA~~~fiq~lL~L~~~VvKwl~VpvfavSsLSEmsYc~~~nKel~IPi 147 (249)
...+.+.+-.++.|. . .|.|.. .+..+.|.+..-. ..+..+.++.+--++.+|++|=+ +
T Consensus 126 ~s~e~L~~fi~~~~~~~~~~~~p~p~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------------~ 189 (224)
T PTZ00443 126 RSTEKLAAFALGDFKKALGAPVPAPLS--FFALTIDFFVSGT-NEALRIYDAAFAGFFTISSFAFL-------------F 189 (224)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCCchH--HHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHH-------------H
Confidence 344444444444433 3 344444 7888888888877 88888888888877877776521 4
Q ss_pred hHHHHHHHHH
Q 025669 148 PLLIGMAISD 157 (249)
Q Consensus 148 gLl~G~~vAg 157 (249)
|+|+|.+++-
T Consensus 190 g~~~~~~~~~ 199 (224)
T PTZ00443 190 GILMGLMIAL 199 (224)
T ss_pred HHHHHHHHHH
Confidence 6666666553
No 8
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=25.60 E-value=3.2e+02 Score=26.05 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhhhccceeeeehhHHHHHHHHHHHHHHHHhhCcccccCCCchHHH
Q 025669 101 ALENFIQLILDLFMAVVKYLSVPLLAVSSLSEMSYCAHEKKLFLVPVPLLIGMAISDLLRETILDLSPLLKDAEVPWHLI 180 (249)
Q Consensus 101 A~~~fiq~lL~L~~~VvKwl~VpvfavSsLSEmsYc~~~nKel~IPigLl~G~~vAg~LKETalELs~~lee~~~pwhLl 180 (249)
..++.++.|.+...+++.- +++|+.++ |.++ ..++.-++|.+.+-||..++.+++.-
T Consensus 143 ~~e~~i~~L~~~~~~~~~~------I~~S~~~~------------P~~l---R~i~~~l~~~v~~kFp~~~~~~~~~~-- 199 (333)
T cd05135 143 VRESSLEMLQGYLSSITDA------IVGSVSQC------------PPVM---RLTFKQLHKRVEERFPEAENQDVKYL-- 199 (333)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHhhHHhC------------CHHH---HHHHHHHHHHHHHHCCCCccchhhHH--
Confidence 3466777776666665553 56666654 5555 56888899999999998877777654
Q ss_pred HHHHHHHHhhcCCCCCCC
Q 025669 181 AIGIFFTVIKLPGPYYPY 198 (249)
Q Consensus 181 ~i~~fF~liK~~gpy~p~ 198 (249)
+++ =|++..|..|-.-+
T Consensus 200 ~Vg-~fiFLRFi~PAIvs 216 (333)
T cd05135 200 AIS-GFLFLRFFAPAILT 216 (333)
T ss_pred HHH-HHHHHHHhccccCC
Confidence 444 56677777776544
No 9
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=21.74 E-value=1.8e+02 Score=21.15 Aligned_cols=30 Identities=27% Similarity=0.628 Sum_probs=23.5
Q ss_pred HHHHHHhcCCCcccccchhhHHHHHHHHHHHHHHHHHHH
Q 025669 81 RVRKLWDNSPQPVKSFPWNRALENFIQLILDLFMAVVKY 119 (249)
Q Consensus 81 ~~~kLwe~~PePVK~FPW~KA~~~fiq~lL~L~~~VvKw 119 (249)
.-|.+|-.+|.| ...|+|-|++++....|+
T Consensus 21 vlE~~W~~~~~~---------~~~~lqglIq~A~a~~h~ 50 (62)
T PF03745_consen 21 VLEELWKAAPGP---------ERDFLQGLIQLAVALYHL 50 (62)
T ss_dssp HHHHHCCCT-CC---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcc---------hHHHHHHHHHHHHHHHHH
Confidence 456788887776 678999999999988886
No 10
>PF08009 CDP-OH_P_tran_2: CDP-alcohol phosphatidyltransferase 2; InterPro: IPR012616 This domain is found on CDP-alcohol phosphatidyltransferases. These enzymes catalyse the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond.
Probab=19.79 E-value=2.6e+02 Score=19.38 Aligned_cols=33 Identities=21% Similarity=0.471 Sum_probs=25.4
Q ss_pred eeeeehhHHHHHHHHHHHHHHHHhhCcccccCCCchHHHHHHHHHHH
Q 025669 142 LFLVPVPLLIGMAISDLLRETILDLSPLLKDAEVPWHLIAIGIFFTV 188 (249)
Q Consensus 142 el~IPigLl~G~~vAg~LKETalELs~~lee~~~pwhLl~i~~fF~l 188 (249)
.+..|+=+++|..+|-++-+ ||+-+.+.++--+
T Consensus 3 ~~vlpl~~~v~l~~a~Lis~--------------PW~tL~~~~i~Yl 35 (39)
T PF08009_consen 3 DLVLPLILLVGLYAALLISY--------------PWLTLSVLGILYL 35 (39)
T ss_pred ceehHHHHHHHHHHHHHHHh--------------hHHHHHHHHHHHH
Confidence 46788888999999988765 8998877665433
Done!