Query 025669
Match_columns 249
No_of_seqs 17 out of 19
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 15:03:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025669.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025669hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jrh_A Mitogen-activated prote 18.0 24 0.00082 27.8 -0.2 20 126-148 36-55 (94)
2 2c60_A Human mitogen-activated 14.0 35 0.0012 27.5 -0.2 19 127-148 64-82 (111)
3 2i53_A Cyclin K; cell cycle, t 13.1 1.1E+02 0.0037 25.1 2.5 21 174-194 80-100 (258)
4 2npt_B Mitogen-activated prote 12.9 41 0.0014 26.7 -0.1 20 126-148 52-71 (100)
5 1ais_B TFB TFIIB, protein (tra 12.1 1.1E+02 0.0038 24.1 2.2 38 157-194 27-68 (200)
6 3mpz_A Cytidine deaminase; ssg 11.5 1.6E+02 0.0055 24.1 3.0 40 60-99 9-49 (150)
7 1c9b_A General transcription f 9.5 1.5E+02 0.0052 23.5 2.2 37 158-194 24-64 (207)
8 4hl4_A TBC1 domain family memb 9.4 1.9E+02 0.0063 24.4 2.8 22 70-91 270-291 (292)
9 1bia_A BIRA bifunctional prote 8.7 1.4E+02 0.0047 25.9 1.7 16 147-162 149-164 (321)
10 1ug7_A 2610208M17RIK protein; 8.5 2.2E+02 0.0076 23.3 2.8 31 68-99 88-118 (128)
No 1
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=17.96 E-value=24 Score=27.76 Aligned_cols=20 Identities=5% Similarity=0.157 Sum_probs=16.2
Q ss_pred Hhhhhchhhhhhhccceeeeehh
Q 025669 126 AVSSLSEMSYCAHEKKLFLVPVP 148 (249)
Q Consensus 126 avSsLSEmsYc~~~nKel~IPig 148 (249)
|+.=-.||-|| |.|+.||+-
T Consensus 36 afGq~ldl~y~---nnEL~iPL~ 55 (94)
T 2jrh_A 36 VFGQPLDLHYM---NNELSILLK 55 (94)
T ss_dssp HHCSSEEEEEE---CSSCEEECC
T ss_pred HhCCeeeeEEe---cceeEEecc
Confidence 34556799999 999999974
No 2
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=14.02 E-value=35 Score=27.51 Aligned_cols=19 Identities=5% Similarity=0.163 Sum_probs=15.3
Q ss_pred hhhhchhhhhhhccceeeeehh
Q 025669 127 VSSLSEMSYCAHEKKLFLVPVP 148 (249)
Q Consensus 127 vSsLSEmsYc~~~nKel~IPig 148 (249)
+.=-.||-|| |.|++||+-
T Consensus 64 fGq~ldl~y~---nnEL~IPL~ 82 (111)
T 2c60_A 64 FGQPLDLHYM---NNELSILLK 82 (111)
T ss_dssp HSSCCEEEEE---CSSCEEECC
T ss_pred hCCeeeeEEe---cceEEEecc
Confidence 3455799999 999999973
No 3
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=13.13 E-value=1.1e+02 Score=25.07 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=18.5
Q ss_pred CCchHHHHHHHHHHHhhcCCC
Q 025669 174 EVPWHLIAIGIFFTVIKLPGP 194 (249)
Q Consensus 174 ~~pwhLl~i~~fF~liK~~gp 194 (249)
+.+.+++|++|+|...|+-..
T Consensus 80 ~~~~qlv~~acL~lA~K~eE~ 100 (258)
T 2i53_A 80 QFPRYVTGACCLFLAGKVEET 100 (258)
T ss_dssp TSCHHHHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHHccccc
Confidence 467899999999999999883
No 4
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=12.88 E-value=41 Score=26.69 Aligned_cols=20 Identities=15% Similarity=0.458 Sum_probs=16.1
Q ss_pred Hhhhhchhhhhhhccceeeeehh
Q 025669 126 AVSSLSEMSYCAHEKKLFLVPVP 148 (249)
Q Consensus 126 avSsLSEmsYc~~~nKel~IPig 148 (249)
|+.--.||-|| |.|++||+-
T Consensus 52 afGq~ldl~y~---nnEL~iPL~ 71 (100)
T 2npt_B 52 AFGQSMDLHYT---NNELVIPLT 71 (100)
T ss_dssp HHTSCEEEEEE---ETTEEEECC
T ss_pred HhCCeeeeEEe---cceeEEecc
Confidence 34556799999 999999974
No 5
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=12.07 E-value=1.1e+02 Score=24.07 Aligned_cols=38 Identities=8% Similarity=-0.020 Sum_probs=31.0
Q ss_pred HHHHHHHHhhCcccccCC----CchHHHHHHHHHHHhhcCCC
Q 025669 157 DLLRETILDLSPLLKDAE----VPWHLIAIGIFFTVIKLPGP 194 (249)
Q Consensus 157 g~LKETalELs~~lee~~----~pwhLl~i~~fF~liK~~gp 194 (249)
.-..|||.+++.+..+.+ -+-..++.+|+|...|..+.
T Consensus 27 ~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~ 68 (200)
T 1ais_B 27 RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKV 68 (200)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCC
Confidence 356799999999887765 45678999999999999883
No 6
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=11.45 E-value=1.6e+02 Score=24.07 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=25.6
Q ss_pred cccccCCCCC-CCccchHHHHHHHHHHHhcCCCcccccchh
Q 025669 60 MNMAAGQSGD-PEKLNLDQLVNRVRKLWDNSPQPVKSFPWN 99 (249)
Q Consensus 60 mn~t~~qs~e-P~Kv~~~~~i~~~~kLwe~~PePVK~FPW~ 99 (249)
|..-.+|--| +++++.+.+++++++.-+++=-|.-+||=.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~L~~~A~~a~~~AYaPYS~F~VG 49 (150)
T 3mpz_A 9 MGTLEAQTQGPGSMVNWNALRSKAIEVSRHAYAPYSGFPVG 49 (150)
T ss_dssp -----------CCSCCHHHHHHHHHHHHTTCBCTTTCCCCE
T ss_pred ccceeeccCCCCccHHHHHHHHHHHHHHHhccCCCCCCCEE
Confidence 4444455444 589999999999999999987777788653
No 7
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=9.53 E-value=1.5e+02 Score=23.46 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=29.7
Q ss_pred HHHHHHHhhCccccc----CCCchHHHHHHHHHHHhhcCCC
Q 025669 158 LLRETILDLSPLLKD----AEVPWHLIAIGIFFTVIKLPGP 194 (249)
Q Consensus 158 ~LKETalELs~~lee----~~~pwhLl~i~~fF~liK~~gp 194 (249)
-..+||..+|++.-+ .|-...+++.+|+|...|.-+.
T Consensus 24 ~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~ 64 (207)
T 1c9b_A 24 NIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV 64 (207)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC
Confidence 456888888877654 3567889999999999999885
No 8
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=9.36 E-value=1.9e+02 Score=24.40 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=19.8
Q ss_pred CCccchHHHHHHHHHHHhcCCC
Q 025669 70 PEKLNLDQLVNRVRKLWDNSPQ 91 (249)
Q Consensus 70 P~Kv~~~~~i~~~~kLwe~~Pe 91 (249)
|+.++.+.++.++.+||+..|.
T Consensus 270 p~~~d~~~li~~A~~l~~~~pp 291 (292)
T 4hl4_A 270 PQDLPYETLISRAGDLFVQFPP 291 (292)
T ss_dssp CSSCCHHHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCC
Confidence 6788899999999999999885
No 9
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=8.70 E-value=1.4e+02 Score=25.93 Aligned_cols=16 Identities=31% Similarity=0.789 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHH
Q 025669 147 VPLLIGMAISDLLRET 162 (249)
Q Consensus 147 igLl~G~~vAg~LKET 162 (249)
+++++|+++++.|++.
T Consensus 149 l~l~~~~av~~al~~~ 164 (321)
T 1bia_A 149 LSLVIGIVMAEVLRKL 164 (321)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6789999999999886
No 10
>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical UP-and-DOWN bundle, structural genomics; NMR {Mus musculus} SCOP: a.24.24.1
Probab=8.50 E-value=2.2e+02 Score=23.32 Aligned_cols=31 Identities=19% Similarity=0.455 Sum_probs=24.8
Q ss_pred CCCCccchHHHHHHHHHHHhcCCCcccccchh
Q 025669 68 GDPEKLNLDQLVNRVRKLWDNSPQPVKSFPWN 99 (249)
Q Consensus 68 ~eP~Kv~~~~~i~~~~kLwe~~PePVK~FPW~ 99 (249)
+++..++++. +.+.+-+..+.+.++++||-+
T Consensus 88 ~~~~gi~led-~K~l~~~lk~ll~~~~eFP~d 118 (128)
T 1ug7_A 88 QSQEEFKLED-LKKLEPILKNILTYNKEFPFD 118 (128)
T ss_dssp SCCCSCCSHH-HHTHHHHHHTTTTCCSCCSSC
T ss_pred cCCCCCCHHH-HHHHHHHHHHhcccCCCCCCc
Confidence 3478888874 455888999999999999975
Done!