Query 025670
Match_columns 249
No_of_seqs 203 out of 1925
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:15:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025670.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025670hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0840 ATP-dependent Clp prot 100.0 2.3E-62 4.9E-67 426.4 18.5 207 29-235 61-269 (275)
2 COG0740 ClpP Protease subunit 100.0 1.3E-61 2.8E-66 413.3 21.1 193 34-226 3-195 (200)
3 PRK14514 ATP-dependent Clp pro 100.0 5.9E-58 1.3E-62 398.8 23.0 193 32-224 28-220 (221)
4 PRK14513 ATP-dependent Clp pro 100.0 2.2E-57 4.7E-62 390.6 22.5 192 34-225 3-194 (201)
5 PRK12551 ATP-dependent Clp pro 100.0 3.3E-56 7.3E-61 382.3 21.8 191 35-225 2-192 (196)
6 CHL00028 clpP ATP-dependent Cl 100.0 2.3E-55 4.9E-60 378.4 22.1 190 35-224 5-197 (200)
7 PRK12552 ATP-dependent Clp pro 100.0 4.8E-55 1.1E-59 380.1 21.4 178 47-224 19-215 (222)
8 TIGR00493 clpP ATP-dependent C 100.0 4.2E-52 9.2E-57 356.0 21.9 189 34-222 2-190 (191)
9 PRK00277 clpP ATP-dependent Cl 100.0 4.9E-50 1.1E-54 345.5 22.3 193 33-225 6-198 (200)
10 PRK14512 ATP-dependent Clp pro 100.0 3.9E-49 8.5E-54 339.1 20.8 177 48-224 13-189 (197)
11 PRK12553 ATP-dependent Clp pro 100.0 2E-48 4.3E-53 337.2 20.7 193 32-224 9-203 (207)
12 PF00574 CLP_protease: Clp pro 100.0 1.1E-48 2.3E-53 331.2 14.7 180 44-223 2-181 (182)
13 cd07017 S14_ClpP_2 Caseinolyti 100.0 2.3E-46 5E-51 315.1 18.3 171 50-220 1-171 (171)
14 cd07013 S14_ClpP Caseinolytic 100.0 4.7E-45 1E-49 304.9 19.7 162 59-220 1-162 (162)
15 cd07016 S14_ClpP_1 Caseinolyti 100.0 1.5E-34 3.2E-39 240.0 19.0 156 60-220 2-160 (160)
16 cd07015 Clp_protease_NfeD Nodu 100.0 3.3E-33 7.2E-38 235.4 17.9 157 60-225 3-167 (172)
17 cd00394 Clp_protease_like Case 100.0 1E-31 2.2E-36 222.6 18.2 159 60-220 1-161 (161)
18 cd07020 Clp_protease_NfeD_1 No 100.0 1.7E-28 3.7E-33 209.1 19.0 161 60-224 3-166 (187)
19 cd07021 Clp_protease_NfeD_like 100.0 7.9E-27 1.7E-31 197.8 17.9 157 60-224 3-172 (178)
20 TIGR00706 SppA_dom signal pept 99.9 1.5E-21 3.2E-26 168.9 18.1 162 60-225 4-197 (207)
21 COG0616 SppA Periplasmic serin 99.9 4.3E-22 9.2E-27 182.7 15.2 163 60-225 63-264 (317)
22 cd07023 S49_Sppa_N_C Signal pe 99.9 8E-21 1.7E-25 164.1 17.3 162 60-224 4-201 (208)
23 cd07014 S49_SppA Signal peptid 99.9 1.2E-20 2.6E-25 159.2 16.8 145 71-224 23-170 (177)
24 TIGR00705 SppA_67K signal pept 99.9 9.4E-21 2E-25 186.3 18.1 163 60-225 312-513 (584)
25 cd07022 S49_Sppa_36K_type Sign 99.9 3.5E-20 7.6E-25 161.0 17.9 162 60-225 4-208 (214)
26 cd07019 S49_SppA_1 Signal pept 99.8 5.2E-19 1.1E-23 153.4 17.7 163 60-225 4-205 (211)
27 PRK10949 protease 4; Provision 99.8 2.5E-19 5.4E-24 176.8 16.7 163 60-225 330-531 (618)
28 PRK11778 putative inner membra 99.8 5.5E-18 1.2E-22 155.7 16.7 161 59-225 93-288 (330)
29 cd07018 S49_SppA_67K_type Sign 99.8 1.8E-17 3.8E-22 144.9 16.2 158 64-225 23-215 (222)
30 COG1030 NfeD Membrane-bound se 99.7 8E-17 1.7E-21 151.2 14.8 158 59-224 29-189 (436)
31 PF01972 SDH_sah: Serine dehyd 99.7 7.5E-16 1.6E-20 137.2 16.3 164 45-217 48-242 (285)
32 TIGR00705 SppA_67K signal pept 99.4 1.5E-12 3.3E-17 128.5 14.3 153 70-225 76-271 (584)
33 PF01343 Peptidase_S49: Peptid 99.4 4.2E-12 9.2E-17 105.0 11.7 111 112-225 2-142 (154)
34 PRK10949 protease 4; Provision 99.3 1.3E-11 2.7E-16 122.5 14.1 154 70-226 95-291 (618)
35 cd06558 crotonase-like Crotona 99.0 1.7E-08 3.7E-13 85.2 14.8 145 60-223 11-181 (195)
36 COG3904 Predicted periplasmic 98.9 2.9E-08 6.4E-13 85.4 12.7 152 60-219 78-236 (245)
37 PRK05869 enoyl-CoA hydratase; 98.8 2E-07 4.4E-12 81.5 14.8 145 60-225 20-189 (222)
38 PRK06688 enoyl-CoA hydratase; 98.8 1.6E-07 3.4E-12 83.5 13.9 146 60-224 17-185 (259)
39 PRK07511 enoyl-CoA hydratase; 98.8 2E-07 4.2E-12 83.1 14.4 146 60-224 15-187 (260)
40 PRK08258 enoyl-CoA hydratase; 98.8 2.2E-07 4.8E-12 83.7 14.8 147 60-224 29-203 (277)
41 PRK06495 enoyl-CoA hydratase; 98.8 2E-07 4.2E-12 83.1 14.2 143 60-224 16-183 (257)
42 PRK03580 carnitinyl-CoA dehydr 98.7 2.5E-07 5.4E-12 82.6 14.2 147 60-225 15-184 (261)
43 PF00378 ECH: Enoyl-CoA hydrat 98.7 2.2E-07 4.9E-12 81.8 12.4 145 60-225 10-180 (245)
44 PRK11423 methylmalonyl-CoA dec 98.7 3.2E-07 6.9E-12 82.0 13.5 145 60-224 16-185 (261)
45 PRK06190 enoyl-CoA hydratase; 98.7 5.7E-07 1.2E-11 80.4 15.0 146 60-224 16-183 (258)
46 TIGR03200 dearomat_oah 6-oxocy 98.7 4.7E-07 1E-11 84.5 14.5 161 42-226 27-215 (360)
47 PRK06143 enoyl-CoA hydratase; 98.7 4.6E-07 9.9E-12 80.8 14.0 145 60-224 19-188 (256)
48 PRK09076 enoyl-CoA hydratase; 98.7 6.9E-07 1.5E-11 79.6 14.8 147 60-225 15-185 (258)
49 PRK05981 enoyl-CoA hydratase; 98.7 5.4E-07 1.2E-11 80.6 13.7 147 60-225 16-193 (266)
50 PRK06210 enoyl-CoA hydratase; 98.7 4.6E-07 9.9E-12 81.3 13.1 144 60-224 18-197 (272)
51 PRK09674 enoyl-CoA hydratase-i 98.7 7.7E-07 1.7E-11 79.2 14.4 146 60-224 14-181 (255)
52 PRK07658 enoyl-CoA hydratase; 98.6 7.3E-07 1.6E-11 79.2 14.1 145 61-224 15-183 (257)
53 PRK05980 enoyl-CoA hydratase; 98.6 6E-07 1.3E-11 80.0 13.1 147 60-225 15-190 (260)
54 PRK07509 enoyl-CoA hydratase; 98.6 8.1E-07 1.8E-11 79.2 13.9 145 60-223 15-190 (262)
55 PRK08150 enoyl-CoA hydratase; 98.6 1.4E-06 2.9E-11 77.8 15.0 144 61-225 15-182 (255)
56 PRK08138 enoyl-CoA hydratase; 98.6 1.3E-06 2.9E-11 77.9 14.7 147 60-225 20-188 (261)
57 PRK08260 enoyl-CoA hydratase; 98.6 8.1E-07 1.8E-11 80.8 13.4 146 60-224 16-202 (296)
58 PRK05809 3-hydroxybutyryl-CoA 98.6 9.4E-07 2E-11 78.8 13.6 144 60-224 16-186 (260)
59 PLN02600 enoyl-CoA hydratase 98.6 1.4E-06 3.1E-11 77.3 14.4 140 67-225 19-178 (251)
60 PLN02921 naphthoate synthase 98.6 1.2E-06 2.7E-11 81.0 14.5 146 60-224 79-250 (327)
61 PRK07110 polyketide biosynthes 98.6 7.9E-07 1.7E-11 78.9 12.7 146 60-224 17-183 (249)
62 TIGR03189 dienoyl_CoA_hyt cycl 98.6 1.7E-06 3.6E-11 77.0 14.6 145 60-224 13-177 (251)
63 TIGR03210 badI 2-ketocyclohexa 98.6 1.2E-06 2.7E-11 78.0 13.8 146 60-224 14-183 (256)
64 PRK06023 enoyl-CoA hydratase; 98.6 1.1E-06 2.4E-11 78.0 13.4 146 60-224 18-186 (251)
65 PRK07468 enoyl-CoA hydratase; 98.6 6.1E-07 1.3E-11 80.2 11.7 145 60-224 17-188 (262)
66 PLN02888 enoyl-CoA hydratase 98.6 1.8E-06 3.9E-11 77.4 14.7 144 60-224 22-188 (265)
67 PRK07938 enoyl-CoA hydratase; 98.6 1.1E-06 2.3E-11 78.2 13.1 143 60-224 14-180 (249)
68 PLN02664 enoyl-CoA hydratase/d 98.6 1.5E-06 3.3E-11 78.2 14.0 143 60-223 20-199 (275)
69 PRK08139 enoyl-CoA hydratase; 98.6 2E-06 4.3E-11 77.1 14.6 143 60-224 23-192 (266)
70 PRK06142 enoyl-CoA hydratase; 98.6 1.6E-06 3.5E-11 77.8 13.9 143 60-223 18-197 (272)
71 PRK09245 enoyl-CoA hydratase; 98.6 1.8E-06 3.8E-11 77.3 14.1 146 60-224 15-192 (266)
72 PRK06127 enoyl-CoA hydratase; 98.6 2.2E-06 4.8E-11 76.9 14.7 145 60-225 23-196 (269)
73 PRK06494 enoyl-CoA hydratase; 98.6 2.4E-06 5.1E-11 76.3 14.6 146 60-224 16-183 (259)
74 TIGR01929 menB naphthoate synt 98.6 1.3E-06 2.9E-11 77.9 13.0 145 60-224 15-186 (259)
75 PRK07854 enoyl-CoA hydratase; 98.5 2E-06 4.4E-11 76.1 13.8 141 60-222 12-173 (243)
76 PRK05864 enoyl-CoA hydratase; 98.5 1.4E-06 3E-11 78.5 13.0 147 60-224 22-199 (276)
77 PRK07396 dihydroxynaphthoic ac 98.5 1.9E-06 4.1E-11 77.6 13.8 146 60-224 25-196 (273)
78 PLN03230 acetyl-coenzyme A car 98.5 1.6E-06 3.5E-11 82.0 13.7 136 58-224 193-338 (431)
79 PLN03214 probable enoyl-CoA hy 98.5 1.6E-06 3.4E-11 78.4 13.3 147 60-224 24-197 (278)
80 PRK05995 enoyl-CoA hydratase; 98.5 2E-06 4.3E-11 76.8 13.8 143 60-224 16-187 (262)
81 PRK07657 enoyl-CoA hydratase; 98.5 2.4E-06 5.3E-11 76.2 14.3 145 60-225 16-187 (260)
82 TIGR02280 PaaB1 phenylacetate 98.5 9.1E-07 2E-11 78.7 11.4 146 60-225 11-183 (256)
83 PRK07260 enoyl-CoA hydratase; 98.5 1.8E-06 3.9E-11 76.8 13.1 145 60-225 14-188 (255)
84 PRK05724 acetyl-CoA carboxylas 98.5 1.5E-06 3.2E-11 80.0 12.8 137 57-224 122-268 (319)
85 PRK12319 acetyl-CoA carboxylas 98.5 3.9E-06 8.4E-11 75.2 15.2 137 57-224 69-215 (256)
86 PRK06213 enoyl-CoA hydratase; 98.5 2.5E-06 5.4E-11 74.7 13.8 142 60-224 15-181 (229)
87 PRK07327 enoyl-CoA hydratase; 98.5 2.4E-06 5.1E-11 76.7 13.8 145 60-224 24-195 (268)
88 PRK06144 enoyl-CoA hydratase; 98.5 3E-06 6.4E-11 75.8 14.1 140 67-224 32-192 (262)
89 PRK06563 enoyl-CoA hydratase; 98.5 2.8E-06 6.1E-11 75.5 13.9 144 60-224 11-181 (255)
90 PRK08259 enoyl-CoA hydratase; 98.5 3.5E-06 7.6E-11 75.0 14.3 147 60-225 15-183 (254)
91 PRK08252 enoyl-CoA hydratase; 98.5 4.4E-06 9.5E-11 74.3 14.7 146 61-225 16-181 (254)
92 PRK06072 enoyl-CoA hydratase; 98.5 3.9E-06 8.5E-11 74.4 14.3 141 60-220 12-173 (248)
93 PRK08140 enoyl-CoA hydratase; 98.5 1.6E-06 3.4E-11 77.4 11.8 146 60-225 16-189 (262)
94 PRK08290 enoyl-CoA hydratase; 98.5 1.6E-06 3.5E-11 78.7 12.0 95 109-224 111-205 (288)
95 TIGR00513 accA acetyl-CoA carb 98.5 3.2E-06 7E-11 77.7 13.9 137 57-224 122-268 (316)
96 PRK05862 enoyl-CoA hydratase; 98.5 4.5E-06 9.7E-11 74.3 14.3 146 60-224 16-183 (257)
97 PRK08788 enoyl-CoA hydratase; 98.5 5E-06 1.1E-10 75.7 14.5 140 67-225 40-211 (287)
98 PRK09120 p-hydroxycinnamoyl Co 98.5 5E-06 1.1E-10 74.9 14.3 147 60-225 20-194 (275)
99 CHL00198 accA acetyl-CoA carbo 98.5 2.5E-06 5.3E-11 78.6 12.3 137 57-224 125-271 (322)
100 PRK07799 enoyl-CoA hydratase; 98.4 5.8E-06 1.3E-10 73.8 14.3 147 60-225 17-190 (263)
101 PRK08321 naphthoate synthase; 98.4 6.8E-06 1.5E-10 75.1 14.7 146 60-224 37-225 (302)
102 PRK05674 gamma-carboxygeranoyl 98.4 3.8E-06 8.2E-11 75.3 12.8 138 67-224 30-189 (265)
103 PRK08272 enoyl-CoA hydratase; 98.4 5.2E-06 1.1E-10 75.7 13.6 143 60-224 22-213 (302)
104 PLN03229 acetyl-coenzyme A car 98.4 4.9E-06 1.1E-10 83.2 14.1 137 57-224 213-359 (762)
105 PRK05870 enoyl-CoA hydratase; 98.4 3.8E-06 8.2E-11 74.5 11.8 140 60-221 15-181 (249)
106 PRK07112 polyketide biosynthes 98.4 7.3E-06 1.6E-10 73.0 13.6 143 60-224 16-184 (255)
107 PLN02267 enoyl-CoA hydratase/i 98.4 1.7E-05 3.7E-10 70.1 15.4 145 60-223 12-184 (239)
108 PLN02851 3-hydroxyisobutyryl-C 98.4 8.7E-06 1.9E-10 77.5 14.3 188 17-226 13-228 (407)
109 PRK12478 enoyl-CoA hydratase; 98.4 4.1E-06 8.9E-11 76.5 11.5 142 60-224 17-198 (298)
110 PRK07659 enoyl-CoA hydratase; 98.4 6.9E-06 1.5E-10 73.3 12.7 140 60-221 18-184 (260)
111 KOG1680 Enoyl-CoA hydratase [L 98.3 8.4E-06 1.8E-10 73.2 11.3 144 60-225 49-217 (290)
112 PRK07827 enoyl-CoA hydratase; 98.3 1.7E-05 3.7E-10 70.7 13.0 141 60-222 18-187 (260)
113 PRK08184 benzoyl-CoA-dihydrodi 98.3 1.3E-05 2.9E-10 78.9 13.0 142 67-224 49-217 (550)
114 TIGR03134 malonate_gamma malon 98.2 2.8E-05 6.1E-10 69.0 13.6 132 67-226 45-192 (238)
115 TIGR02440 FadJ fatty oxidation 98.2 2E-05 4.4E-10 79.7 14.1 147 60-225 13-188 (699)
116 COG1024 CaiD Enoyl-CoA hydrata 98.2 1.9E-05 4E-10 70.3 12.2 144 60-223 17-186 (257)
117 PRK05617 3-hydroxyisobutyryl-C 98.2 1.2E-05 2.5E-10 74.9 10.9 141 60-225 15-189 (342)
118 PRK11730 fadB multifunctional 98.2 2.9E-05 6.2E-10 78.9 14.4 147 60-225 19-192 (715)
119 TIGR02437 FadB fatty oxidation 98.2 3.3E-05 7.2E-10 78.4 14.8 146 60-224 19-191 (714)
120 PLN02157 3-hydroxyisobutyryl-C 98.2 3.3E-05 7.2E-10 73.4 13.4 147 59-225 48-222 (401)
121 PLN02988 3-hydroxyisobutyryl-C 98.2 4.7E-05 1E-09 71.9 14.3 147 59-225 20-194 (381)
122 PRK11154 fadJ multifunctional 98.2 4.6E-05 1E-09 77.3 14.8 147 60-225 18-193 (708)
123 PLN02874 3-hydroxyisobutyryl-C 98.1 5.7E-05 1.2E-09 71.3 13.7 145 59-225 22-194 (379)
124 TIGR03222 benzo_boxC benzoyl-C 98.1 4.6E-05 1E-09 75.1 12.1 142 67-224 45-213 (546)
125 TIGR02441 fa_ox_alpha_mit fatt 98.0 0.0002 4.3E-09 73.1 14.9 137 67-223 38-198 (737)
126 TIGR01117 mmdA methylmalonyl-C 97.9 8.3E-05 1.8E-09 72.8 10.9 144 64-225 328-483 (512)
127 TIGR03222 benzo_boxC benzoyl-C 97.8 0.00048 1E-08 68.0 14.8 140 67-225 295-467 (546)
128 PRK08184 benzoyl-CoA-dihydrodi 97.5 0.00093 2E-08 66.0 11.4 140 67-225 299-471 (550)
129 PLN02820 3-methylcrotonyl-CoA 97.5 0.004 8.7E-08 61.8 15.3 151 65-225 380-542 (569)
130 COG0825 AccA Acetyl-CoA carbox 97.4 0.00088 1.9E-08 60.8 9.1 108 88-224 150-267 (317)
131 PRK05654 acetyl-CoA carboxylas 97.4 0.0023 5E-08 58.5 11.8 127 62-226 132-269 (292)
132 PF01039 Carboxyl_trans: Carbo 97.4 0.00028 6.1E-09 68.8 5.9 147 65-225 308-466 (493)
133 TIGR00515 accD acetyl-CoA carb 97.3 0.0025 5.5E-08 58.1 10.9 128 62-227 131-269 (285)
134 TIGR03133 malonate_beta malona 96.7 0.011 2.4E-07 53.6 9.4 93 62-156 70-176 (274)
135 PRK07189 malonate decarboxylas 96.5 0.015 3.3E-07 53.3 8.6 93 62-156 79-185 (301)
136 PF06833 MdcE: Malonate decarb 96.4 0.036 7.9E-07 49.1 10.4 115 84-225 60-189 (234)
137 COG4799 Acetyl-CoA carboxylase 96.3 0.01 2.2E-07 58.1 6.8 148 63-225 336-496 (526)
138 KOG1681 Enoyl-CoA isomerase [L 96.3 0.0025 5.3E-08 56.3 2.3 103 105-225 115-217 (292)
139 COG0447 MenB Dihydroxynaphthoi 96.2 0.0076 1.7E-07 52.9 4.9 136 68-224 44-205 (282)
140 CHL00174 accD acetyl-CoA carbo 95.8 0.12 2.6E-06 47.4 10.7 126 62-225 144-281 (296)
141 KOG1682 Enoyl-CoA isomerase [L 95.5 0.036 7.8E-07 48.4 6.2 103 107-229 116-218 (287)
142 KOG1679 Enoyl-CoA hydratase [L 95.1 0.075 1.6E-06 46.8 6.9 130 72-224 60-213 (291)
143 PLN02820 3-methylcrotonyl-CoA 94.9 0.18 3.9E-06 50.2 9.8 91 62-156 140-244 (569)
144 KOG1684 Enoyl-CoA hydratase [L 92.7 0.53 1.1E-05 44.3 7.9 91 58-150 48-167 (401)
145 TIGR01117 mmdA methylmalonyl-C 91.9 1 2.2E-05 44.4 9.4 92 62-157 93-194 (512)
146 PF01039 Carboxyl_trans: Carbo 89.4 0.76 1.6E-05 45.0 5.9 92 62-157 68-171 (493)
147 cd06567 Peptidase_S41 C-termin 89.4 2.8 6.2E-05 35.9 8.9 75 62-138 65-166 (224)
148 cd07560 Peptidase_S41_CPP C-te 89.3 2.9 6.2E-05 36.2 8.9 88 50-139 41-154 (211)
149 KOG0016 Enoyl-CoA hydratase/is 88.5 1.7 3.7E-05 39.1 6.9 98 108-224 99-196 (266)
150 TIGR00225 prc C-terminal pepti 85.6 4 8.7E-05 37.6 8.0 72 67-139 161-257 (334)
151 PLN00049 carboxyl-terminal pro 82.9 5.9 0.00013 37.5 8.0 78 59-137 195-300 (389)
152 PRK11186 carboxy-terminal prot 82.1 5.7 0.00012 40.5 8.0 68 69-137 365-458 (667)
153 COG0793 Prc Periplasmic protea 80.3 7 0.00015 37.4 7.6 79 60-139 205-310 (406)
154 cd07561 Peptidase_S41_CPP_like 80.3 9.7 0.00021 34.0 8.1 46 68-114 75-121 (256)
155 smart00245 TSPc tail specific 77.5 15 0.00033 30.9 8.2 72 67-139 38-135 (192)
156 PF08496 Peptidase_S49_N: Pept 76.7 3.8 8.1E-05 34.2 4.0 43 60-104 102-147 (155)
157 PF03572 Peptidase_S41: Peptid 75.1 15 0.00033 29.4 7.3 68 70-138 15-112 (169)
158 PHA00099 minor capsid protein 74.9 27 0.00058 28.3 8.2 82 163-247 59-143 (147)
159 KOG0540 3-Methylcrotonyl-CoA c 69.8 41 0.0009 32.9 9.6 86 65-154 363-461 (536)
160 PLN02522 ATP citrate (pro-S)-l 68.6 57 0.0012 33.1 10.8 65 59-128 196-262 (608)
161 cd07563 Peptidase_S41_IRBP Int 68.5 32 0.0007 30.1 8.3 64 72-138 82-179 (250)
162 cd07562 Peptidase_S41_TRI Tric 66.3 42 0.00091 29.8 8.7 80 54-138 83-185 (266)
163 COG0074 SucD Succinyl-CoA synt 63.2 27 0.00058 32.1 6.7 67 74-152 187-254 (293)
164 PLN00125 Succinyl-CoA ligase [ 63.0 22 0.00047 32.7 6.2 65 59-128 179-245 (300)
165 COG4799 Acetyl-CoA carboxylase 60.1 26 0.00057 34.8 6.5 89 64-156 104-202 (526)
166 COG0777 AccD Acetyl-CoA carbox 59.3 51 0.0011 30.2 7.7 88 62-157 133-235 (294)
167 TIGR00377 ant_ant_sig anti-ant 55.8 80 0.0017 23.2 7.7 34 60-93 15-48 (108)
168 TIGR02886 spore_II_AA anti-sig 52.7 25 0.00054 26.2 4.1 35 59-93 10-44 (106)
169 PTZ00187 succinyl-CoA syntheta 52.1 48 0.001 30.8 6.6 67 59-128 198-264 (317)
170 COG0757 AroQ 3-dehydroquinate 51.1 49 0.0011 27.2 5.7 30 93-123 70-99 (146)
171 PF13607 Succ_CoA_lig: Succiny 49.7 39 0.00086 27.3 5.1 60 59-126 30-91 (138)
172 cd07043 STAS_anti-anti-sigma_f 48.8 96 0.0021 22.1 7.2 79 59-138 10-90 (99)
173 KOG0781 Signal recognition par 46.7 1.4E+02 0.003 29.8 8.9 96 93-198 354-456 (587)
174 PRK06091 membrane protein FdrA 45.6 55 0.0012 32.8 6.2 68 59-128 222-291 (555)
175 PF01740 STAS: STAS domain; I 44.8 1E+02 0.0022 23.1 6.6 79 59-137 11-99 (117)
176 cd07041 STAS_RsbR_RsbS_like Su 41.7 1.4E+02 0.0031 22.0 7.4 80 59-138 12-93 (109)
177 TIGR01019 sucCoAalpha succinyl 37.7 1.3E+02 0.0027 27.5 6.9 65 59-128 172-237 (286)
178 TIGR00661 MJ1255 conserved hyp 35.1 67 0.0015 29.0 4.8 35 91-126 2-37 (321)
179 TIGR00282 metallophosphoestera 32.3 87 0.0019 28.3 4.9 64 59-123 2-66 (266)
180 PF03808 Glyco_tran_WecB: Glyc 32.3 2.4E+02 0.0051 23.3 7.3 72 49-127 34-112 (172)
181 COG3904 Predicted periplasmic 31.4 1.4E+02 0.003 26.4 5.8 56 62-121 52-107 (245)
182 COG1366 SpoIIAA Anti-anti-sigm 30.5 90 0.0019 23.9 4.2 40 60-101 16-55 (117)
183 cd01455 vWA_F11C1-5a_type Von 30.1 2E+02 0.0044 24.7 6.6 73 51-126 76-152 (191)
184 PF00681 Plectin: Plectin repe 29.9 31 0.00068 22.2 1.2 19 201-219 17-35 (45)
185 TIGR02763 chlamy_scaf chlamydi 29.8 2.6E+02 0.0056 21.9 6.4 59 162-223 28-90 (114)
186 smart00250 PLEC Plectin repeat 29.6 36 0.00078 21.1 1.4 19 202-220 18-36 (38)
187 PRK05678 succinyl-CoA syntheta 29.5 2.2E+02 0.0048 26.0 7.1 65 59-128 174-239 (291)
188 PRK13170 hisH imidazole glycer 29.3 48 0.001 28.1 2.6 29 98-126 45-80 (196)
189 TIGR02364 dha_pts dihydroxyace 29.1 2.9E+02 0.0063 21.9 7.4 56 57-115 27-85 (125)
190 COG1099 Predicted metal-depend 28.3 61 0.0013 29.0 3.1 52 192-244 166-230 (254)
191 PF07027 DUF1318: Protein of u 27.0 2.8E+02 0.0062 21.0 6.4 49 146-200 23-71 (95)
192 cd07382 MPP_DR1281 Deinococcus 25.0 1.4E+02 0.0031 26.6 5.0 62 59-123 1-65 (255)
193 PF14566 PTPlike_phytase: Inos 24.9 1.6E+02 0.0035 23.8 4.9 52 57-113 90-149 (149)
194 PRK10787 DNA-binding ATP-depen 24.7 1.1E+02 0.0024 32.0 4.7 42 60-101 623-672 (784)
195 KOG3093 5-formyltetrahydrofola 24.1 1.6E+02 0.0034 25.5 4.7 44 72-115 31-74 (200)
196 TIGR01579 MiaB-like-C MiaB-lik 23.9 2.2E+02 0.0048 26.9 6.3 70 61-130 2-77 (414)
197 COG1512 Beta-propeller domains 23.4 1.8E+02 0.0038 26.5 5.2 55 57-111 33-89 (271)
198 TIGR02902 spore_lonB ATP-depen 22.9 2.4E+02 0.0053 27.9 6.6 40 60-100 380-436 (531)
199 cd00006 PTS_IIA_man PTS_IIA, P 22.9 2.9E+02 0.0062 21.2 5.8 45 58-105 27-74 (122)
200 PRK14635 hypothetical protein; 22.8 1.5E+02 0.0032 24.7 4.3 55 66-121 49-104 (162)
201 PRK14640 hypothetical protein; 22.6 1.5E+02 0.0033 24.3 4.4 62 61-123 39-104 (152)
202 COG3093 VapI Plasmid maintenan 22.2 1.1E+02 0.0024 23.9 3.2 34 182-215 26-59 (104)
203 PF02601 Exonuc_VII_L: Exonucl 22.1 4E+02 0.0086 24.1 7.4 86 60-150 44-137 (319)
204 PF01381 HTH_3: Helix-turn-hel 21.8 1.5E+02 0.0034 18.9 3.5 33 182-214 12-44 (55)
205 cd06844 STAS Sulphate Transpor 21.6 3.3E+02 0.0071 19.8 7.7 37 59-95 10-46 (100)
206 COG0779 Uncharacterized protei 21.1 1.9E+02 0.0041 24.0 4.6 41 61-101 41-85 (153)
207 KOG3877 NADH:ubiquinone oxidor 20.7 1E+02 0.0022 28.6 3.2 44 58-102 71-117 (393)
208 cd01452 VWA_26S_proteasome_sub 20.6 2.6E+02 0.0056 23.8 5.5 40 88-127 107-147 (187)
209 PRK14637 hypothetical protein; 20.2 1.7E+02 0.0038 24.0 4.2 62 61-123 41-105 (151)
No 1
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-62 Score=426.40 Aligned_cols=207 Identities=60% Similarity=0.993 Sum_probs=195.7
Q ss_pred hccCCCCC-ceeeccCCC-CcccchhhhhccCcEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHH
Q 025670 29 ARSFSLIP-MVIEHSSRG-ERAYDIFSRLLKERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGL 106 (249)
Q Consensus 29 ~~~~~~~p-~~~~~~~~g-~~~~di~~~l~~~riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~ 106 (249)
.+....+| .+++...+| ++++|||++||++|||||+++||+++++.|++||+||+.+|+.++|++|||||||++++|+
T Consensus 61 ~~~~~~~p~~~~~~~~rG~~~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtagl 140 (275)
T KOG0840|consen 61 LRAPILVPRFPIESPGRGRERPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGL 140 (275)
T ss_pred ccccccCCcceeeccccCCCCcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhh
Confidence 34567888 777888888 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 025670 107 AIYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYC 186 (249)
Q Consensus 107 aIyd~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya 186 (249)
+|||+|++++.||.|+|.|+|||+|++|+++|.||+|+++|||++|||||.+++.|++.|+.++++|+.++++.+.++|+
T Consensus 141 AIYDtMq~ik~~V~Tic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a 220 (275)
T KOG0840|consen 141 AIYDTMQYIKPDVSTICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYA 220 (275)
T ss_pred hHHHHHHhhCCCceeeehhhHHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCccccccccccC
Q 025670 187 KHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRPMALVTDAVGR 235 (249)
Q Consensus 187 ~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~~~~~~~~~~~ 235 (249)
++||++.++|+++++||+||+|+||+||||||+|++....++..+....
T Consensus 221 ~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~~p~~~~~~~~~~~ 269 (275)
T KOG0840|consen 221 KHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVIDHPPETRVDDGTLV 269 (275)
T ss_pred HhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhcCCcccccccchhh
Confidence 9999999999999999999999999999999999997665555444333
No 2
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-61 Score=413.29 Aligned_cols=193 Identities=63% Similarity=1.061 Sum_probs=189.6
Q ss_pred CCCceeeccCCCCcccchhhhhccCcEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 025670 34 LIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQ 113 (249)
Q Consensus 34 ~~p~~~~~~~~g~~~~di~~~l~~~riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~ 113 (249)
.+|.+++.+.++++++|+|++|+++|+|||+|+|++.+++.+++||++|+.+++.++|+||||||||+|++|++|||+|+
T Consensus 3 ~~~~~~e~~~~~~~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~ 82 (200)
T COG0740 3 LVPMVIEQTSRGERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQ 82 (200)
T ss_pred CCccccCcccCCCChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCH
Q 025670 114 YIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSI 193 (249)
Q Consensus 114 ~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~ 193 (249)
++++||+|+|.|+|||||++|++||++|+|+++|||++|||||+++++|+++|++++++++.+++..+.++|+++||+++
T Consensus 83 ~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~ 162 (200)
T COG0740 83 FIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTL 162 (200)
T ss_pred hcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcccCHHHHHHcCCcceecCCCcc
Q 025670 194 EVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRPM 226 (249)
Q Consensus 194 ~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~~ 226 (249)
++++++++||+||+|+||++|||||+|++....
T Consensus 163 e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~ 195 (200)
T COG0740 163 EKIEKDTDRDTWMSAEEAKEYGLIDKVIESREA 195 (200)
T ss_pred HHHHHhhcccccCCHHHHHHcCCcceecccccc
Confidence 999999999999999999999999999987653
No 3
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=5.9e-58 Score=398.82 Aligned_cols=193 Identities=48% Similarity=0.805 Sum_probs=188.4
Q ss_pred CCCCCceeeccCCCCcccchhhhhccCcEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHH
Q 025670 32 FSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDT 111 (249)
Q Consensus 32 ~~~~p~~~~~~~~g~~~~di~~~l~~~riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~ 111 (249)
..++|.+++.+.+|++++|+|++||++|||||+|+||+.+++.+++||++|+++++.++|+||||||||+|++|++|||+
T Consensus 28 ~~~~p~~~~~~~~~~~~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~ 107 (221)
T PRK14514 28 SYLNPYILEERQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDT 107 (221)
T ss_pred CcccceeeeeCCCCCcccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCC
Q 025670 112 MQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQ 191 (249)
Q Consensus 112 i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~ 191 (249)
|+++++||+|+|.|+|||||++|+++|++|+|+++|||++|+|||+++..|+++|++++++++.++++.+.++|+++||+
T Consensus 108 m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~ 187 (221)
T PRK14514 108 MQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGT 187 (221)
T ss_pred HHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 192 SIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 192 ~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
+.++|++++++|+||||+||++|||||+|++.+
T Consensus 188 ~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~~ 220 (221)
T PRK14514 188 PFDKVWADSDRDYWMTAQEAKEYGMIDEVLIKK 220 (221)
T ss_pred CHHHHHHHhhcCccCCHHHHHHcCCccEEeecC
Confidence 999999999999999999999999999999864
No 4
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=2.2e-57 Score=390.60 Aligned_cols=192 Identities=54% Similarity=0.961 Sum_probs=186.7
Q ss_pred CCCceeeccCCCCcccchhhhhccCcEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 025670 34 LIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQ 113 (249)
Q Consensus 34 ~~p~~~~~~~~g~~~~di~~~l~~~riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~ 113 (249)
++|.+++.+.+++.+.|+|++||++|||||+++|++++++.|+++|++|+++++.++|+||||||||+|++|++|||+|+
T Consensus 3 ~~p~~~~~~~~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~ 82 (201)
T PRK14513 3 VIPYVIEQTGRGERMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMR 82 (201)
T ss_pred CCCcccccCCCCccccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHH
Confidence 47888888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCH
Q 025670 114 YIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSI 193 (249)
Q Consensus 114 ~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~ 193 (249)
++++||+|+|.|+|||||++|+++|++|+|++.|||++|||||+++..|+++|++.++++++++++.+.++|+++||++.
T Consensus 83 ~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~ 162 (201)
T PRK14513 83 YIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPH 162 (201)
T ss_pred hcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 194 EVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 194 ~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
++|.+++++|+||||+||++|||||+|+++.+
T Consensus 163 ~~I~~~~~rd~~msa~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 163 EKLLRDMERDYFMSPEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred HHHHHHhccCcccCHHHHHHcCCCcEEeccCC
Confidence 99999999999999999999999999998754
No 5
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=3.3e-56 Score=382.32 Aligned_cols=191 Identities=55% Similarity=0.943 Sum_probs=185.0
Q ss_pred CCceeeccCCCCcccchhhhhccCcEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHh
Q 025670 35 IPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQY 114 (249)
Q Consensus 35 ~p~~~~~~~~g~~~~di~~~l~~~riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~ 114 (249)
+|.+.+....|..+.|+|++||++|||||+|+|++++++.++++|++|+.+++.++|+||||||||+|++|++|||+|++
T Consensus 2 ~p~~~~~~~~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~ 81 (196)
T PRK12551 2 IPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQH 81 (196)
T ss_pred CCcccccCCCCccccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHh
Confidence 57777777788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHH
Q 025670 115 IRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIE 194 (249)
Q Consensus 115 ~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~ 194 (249)
++.||+|+|.|+|||+|++|+++|++|+|++.|||++|+|||+++..|+++|++.+++++.++++.+.++|+++||++.+
T Consensus 82 ~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~ 161 (196)
T PRK12551 82 VKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLE 161 (196)
T ss_pred cCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 195 VIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 195 ~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
+|.+++++|+||||+||++|||||+|++..+
T Consensus 162 ~i~~~~~rd~~msa~EA~eyGliD~I~~~~~ 192 (196)
T PRK12551 162 RIQEDTDRDFFMSPSEAVEYGLIDLVIDKRP 192 (196)
T ss_pred HHHHHhhcCcCCCHHHHHHcCCCcEEeccCC
Confidence 9999999999999999999999999998754
No 6
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=2.3e-55 Score=378.36 Aligned_cols=190 Identities=36% Similarity=0.732 Sum_probs=181.9
Q ss_pred CCceeec--cCCCCcccchhhhhccCcEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHH
Q 025670 35 IPMVIEH--SSRGERAYDIFSRLLKERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTM 112 (249)
Q Consensus 35 ~p~~~~~--~~~g~~~~di~~~l~~~riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i 112 (249)
+|.|+.+ ...+.+|.|+|++||++|||||+|+||+++++.+++||++|+.+++.++|+||||||||+|++|++|||+|
T Consensus 5 ~p~~~~~~~~~~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aIyd~m 84 (200)
T CHL00028 5 VPKVPFRLPGEEDATWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIYDTM 84 (200)
T ss_pred CceeeeecCCCCCcccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHHHHHH
Confidence 6777655 34466788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHhhCC
Q 025670 113 QYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGG-YSGQAKDMTIHTKQIVRVWDALNALYCKHTGQ 191 (249)
Q Consensus 113 ~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~-~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~ 191 (249)
++++.||+|+|.|+|||+|++|+++|++|+|+++|||++|+|||+++ ..|+++|+++++++++++++.+.++|+++||+
T Consensus 85 ~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~ 164 (200)
T CHL00028 85 QFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGK 164 (200)
T ss_pred HhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999988 89999999999999999999999999999999
Q ss_pred CHHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 192 SIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 192 ~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
+.++|++++++|+||+|+||++|||||+|+++.
T Consensus 165 ~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 165 PLWVISEDMERDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred CHHHHHHHhhcCccCCHHHHHHcCCCcEEeecC
Confidence 999999999999999999999999999999864
No 7
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=4.8e-55 Score=380.06 Aligned_cols=178 Identities=43% Similarity=0.800 Sum_probs=173.3
Q ss_pred cccchhhhhccCcEEEEcceeCcc----------hHHHHHHHHHHhhhcCCCCCeEEEEeCCCCc---------HHHHHH
Q 025670 47 RAYDIFSRLLKERIICINGPINDD----------TAHVVVAQLLFLESENPSKPIHMYLNSPGGQ---------VTAGLA 107 (249)
Q Consensus 47 ~~~di~~~l~~~riI~L~g~Id~~----------~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~---------V~ag~a 107 (249)
.+.|+|++||++|||||+|+|+++ +++.+++||++|+.+++.++|+||||||||+ |++|++
T Consensus 19 ~~~d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~gla 98 (222)
T PRK12552 19 PPPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFA 98 (222)
T ss_pred CCcCHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHH
Confidence 357999999999999999999999 9999999999999999999999999999988 778899
Q ss_pred HHHHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 025670 108 IYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCK 187 (249)
Q Consensus 108 Iyd~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~ 187 (249)
|||+|++++.||+|+|.|+|||+|++|+++|+||+|+++|||++|||||+++..|+++|++++++++.++++.+.++|++
T Consensus 99 IyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~ 178 (222)
T PRK12552 99 ICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSR 178 (222)
T ss_pred HHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 188 HTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 188 ~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
+||++.++|.++++||+||||+||++|||||+|++..
T Consensus 179 ~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~~ 215 (222)
T PRK12552 179 NTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESR 215 (222)
T ss_pred HHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEeccC
Confidence 9999999999999999999999999999999999864
No 8
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=4.2e-52 Score=356.03 Aligned_cols=189 Identities=60% Similarity=1.033 Sum_probs=183.2
Q ss_pred CCCceeeccCCCCcccchhhhhccCcEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 025670 34 LIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQ 113 (249)
Q Consensus 34 ~~p~~~~~~~~g~~~~di~~~l~~~riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~ 113 (249)
++|.+++...+++.++|+|++||++|+|||+|+|++.+++.++++|++++.+++.++|+||||||||+|++|++|||+|+
T Consensus 2 ~~p~~~~~~~~~~~~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~ 81 (191)
T TIGR00493 2 LIPMVIEQTGRGERSFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQ 81 (191)
T ss_pred CCCcccccCCCCcccccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHH
Confidence 36877778888899999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred hcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCH
Q 025670 114 YIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSI 193 (249)
Q Consensus 114 ~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~ 193 (249)
+++.||+|+|.|+|+|+|++|+++|++++|++.|||++|+|||+++..|++.|++.+++++.++++.+.++|+++||++.
T Consensus 82 ~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~ 161 (191)
T TIGR00493 82 FIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSL 161 (191)
T ss_pred hcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcccCHHHHHHcCCcceecC
Q 025670 194 EVIQKNMDRDYFMTPEEAKEFGIIDEVID 222 (249)
Q Consensus 194 ~~i~~~~~~d~~lsa~EA~e~GlID~I~~ 222 (249)
+++++++++|+||||+||++|||||+|++
T Consensus 162 ~~i~~~~~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 162 EQIEKDTERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred HHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence 99999999999999999999999999985
No 9
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=4.9e-50 Score=345.50 Aligned_cols=193 Identities=62% Similarity=1.045 Sum_probs=185.5
Q ss_pred CCCCceeeccCCCCcccchhhhhccCcEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHH
Q 025670 33 SLIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTM 112 (249)
Q Consensus 33 ~~~p~~~~~~~~g~~~~di~~~l~~~riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i 112 (249)
+++|..+....+++.++|++++||++|+|||+|+|++.+++.++++|++++.+++.++|+||||||||+|++|++|||+|
T Consensus 6 ~~~p~~~~~~~~~~~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~I~d~i 85 (200)
T PRK00277 6 NLVPMVIEQTSRGERSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTM 85 (200)
T ss_pred CCCceeeccCCCCcccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHHHHHHH
Confidence 45787777777788999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 025670 113 QYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQS 192 (249)
Q Consensus 113 ~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~ 192 (249)
++++.||+|+|.|.|+|+|++|+++|++++|++.|||++|+|||+++..|++.|++.+++++.++++.+.++|+++||++
T Consensus 86 ~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~ 165 (200)
T PRK00277 86 QFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQP 165 (200)
T ss_pred HhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 193 IEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 193 ~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
.+++++++++|+||+|+||++|||||+|++..+
T Consensus 166 ~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~~~ 198 (200)
T PRK00277 166 LEKIEKDTDRDNFMSAEEAKEYGLIDEVLTKRK 198 (200)
T ss_pred HHHHHHHhhCCccccHHHHHHcCCccEEeecCC
Confidence 999999999999999999999999999998754
No 10
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=3.9e-49 Score=339.10 Aligned_cols=177 Identities=33% Similarity=0.651 Sum_probs=172.0
Q ss_pred ccchhhhhccCcEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEEcccc
Q 025670 48 AYDIFSRLLKERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQA 127 (249)
Q Consensus 48 ~~di~~~l~~~riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~~~pV~tv~~G~A 127 (249)
..+++++||++|+|||+|+|++.+++.|+++|++|+.+++.++|+|+||||||+|++|++|||+|++++.||+|+|.|+|
T Consensus 13 ~~~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~~~~V~t~v~G~A 92 (197)
T PRK14512 13 IDKSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVKPKVFTIGVGLV 92 (197)
T ss_pred cchHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeee
Confidence 46889999999999999999999999999999999987888999999999999999999999999999999999999999
Q ss_pred chHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccC
Q 025670 128 ASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMT 207 (249)
Q Consensus 128 ASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~ls 207 (249)
+|||++|+++|++++|++.|||++|+|||+++..|+++|++.++++++++++.+.++|+++||++.+++++++++|+|||
T Consensus 93 aSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lt 172 (197)
T PRK14512 93 ASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWLD 172 (197)
T ss_pred HhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCC
Q 025670 208 PEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 208 a~EA~e~GlID~I~~~~ 224 (249)
|+||++|||||+|++..
T Consensus 173 a~EA~~yGliD~I~~~~ 189 (197)
T PRK14512 173 SSSAVKYGLVFEVVETR 189 (197)
T ss_pred HHHHHHcCCccEeecCc
Confidence 99999999999999864
No 11
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=2e-48 Score=337.17 Aligned_cols=193 Identities=50% Similarity=0.857 Sum_probs=184.0
Q ss_pred CCCCCceeeccCCCCcccchhhhhccCcEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHH
Q 025670 32 FSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDT 111 (249)
Q Consensus 32 ~~~~p~~~~~~~~g~~~~di~~~l~~~riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~ 111 (249)
..++|.++....++..+.|++++||++|+|||+|+|++.+++.++++|++++.+++.++|+||||||||++++|++|||+
T Consensus 9 ~~~~p~~~~~~~~~~~~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~ 88 (207)
T PRK12553 9 RYILPSFIERTSYGVKESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDT 88 (207)
T ss_pred CCCCCcccccCCCCCccccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHH
Confidence 34588877777777788999999999999999999999999999999999999888899999999999999999999999
Q ss_pred HHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 025670 112 MQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPS--GGYSGQAKDMTIHTKQIVRVWDALNALYCKHT 189 (249)
Q Consensus 112 i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~--~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~t 189 (249)
|+.++.||+|+|.|.|+|+|++|+++|++|+|++.|||++|+|||+ ++..|++.|++.+++++.++++.+.++|+++|
T Consensus 89 i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~t 168 (207)
T PRK12553 89 IQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHT 168 (207)
T ss_pred HHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999 56789999999999999999999999999999
Q ss_pred CCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 190 GQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 190 g~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
|++.+++++++++++||||+||++|||||+|+++.
T Consensus 169 g~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~ 203 (207)
T PRK12553 169 GQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITSY 203 (207)
T ss_pred CCCHHHHHHHHhcCccccHHHHHHcCCccEEcCch
Confidence 99999999999999999999999999999999865
No 12
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=1.1e-48 Score=331.23 Aligned_cols=180 Identities=49% Similarity=0.865 Sum_probs=171.1
Q ss_pred CCCcccchhhhhccCcEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEE
Q 025670 44 RGERAYDIFSRLLKERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTIC 123 (249)
Q Consensus 44 ~g~~~~di~~~l~~~riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~~~pV~tv~ 123 (249)
+++.|+|||++|+++|+|||.|+||+++++.++++|.+|+++++.++|+|+||||||+|.+|++|||+|+.++.||+|+|
T Consensus 2 ~~~~~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~~~~v~t~~ 81 (182)
T PF00574_consen 2 RGEEWYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSSKAPVTTVV 81 (182)
T ss_dssp TEEEEEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHSSSEEEEEE
T ss_pred CCcEEEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhcCCCeEEEE
Confidence 35679999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCC
Q 025670 124 LGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRD 203 (249)
Q Consensus 124 ~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d 203 (249)
.|.|+|+|++|+++|++++|++.|+|++|+|+|+.+..|+..+++.+++++.++++.+.+.|+++||++.+++.+++++|
T Consensus 82 ~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~ 161 (182)
T PF00574_consen 82 LGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRD 161 (182)
T ss_dssp EEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSST
T ss_pred eCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCC
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHcCCcceecCC
Q 025670 204 YFMTPEEAKEFGIIDEVIDQ 223 (249)
Q Consensus 204 ~~lsa~EA~e~GlID~I~~~ 223 (249)
+||+|+||++|||||+|+++
T Consensus 162 ~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 162 TWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp EEEEHHHHHHHTSSSEEESS
T ss_pred ccccHHHHHHcCCCCEeccC
Confidence 99999999999999999976
No 13
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=100.00 E-value=2.3e-46 Score=315.09 Aligned_cols=171 Identities=65% Similarity=1.081 Sum_probs=167.5
Q ss_pred chhhhhccCcEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEEccccch
Q 025670 50 DIFSRLLKERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQAAS 129 (249)
Q Consensus 50 di~~~l~~~riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~~~pV~tv~~G~AAS 129 (249)
|++++|+++|+|||+|+|++++++.++++|.+++.+++.++|+|+||||||++.+|++|||.|+.++.||+|+|.|+|+|
T Consensus 1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~~~~v~t~~~g~aaS 80 (171)
T cd07017 1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPPVSTICLGLAAS 80 (171)
T ss_pred ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEeEehh
Confidence 78999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHH
Q 025670 130 MGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPE 209 (249)
Q Consensus 130 aa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~ 209 (249)
+|++|+++|++|+|++.|||++|+|+|+.+..|+.+|++.+++++.++++.+.++|+++||++.+++.+++++++||+|+
T Consensus 81 ~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~ 160 (171)
T cd07017 81 MGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAE 160 (171)
T ss_pred HHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccee
Q 025670 210 EAKEFGIIDEV 220 (249)
Q Consensus 210 EA~e~GlID~I 220 (249)
||++|||||+|
T Consensus 161 EA~e~GiiD~V 171 (171)
T cd07017 161 EAKEYGLIDKI 171 (171)
T ss_pred HHHHcCCCccC
Confidence 99999999986
No 14
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=4.7e-45 Score=304.91 Aligned_cols=162 Identities=45% Similarity=0.736 Sum_probs=159.1
Q ss_pred cEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEEccccchHHHHHHhcC
Q 025670 59 RIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLASG 138 (249)
Q Consensus 59 riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~~~pV~tv~~G~AASaa~~I~~ag 138 (249)
|+|||+|+|++.+++.++++|++++.+++.++|+|+||||||+++++++|||+|+.++.||+|+|.|+|+|+|++|+++|
T Consensus 1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~ 80 (162)
T cd07013 1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG 80 (162)
T ss_pred CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcC
Confidence 79999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCcc
Q 025670 139 TKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGIID 218 (249)
Q Consensus 139 ~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID 218 (249)
++|+|++.|++++|+|||+++..|+..|++.+.++++++++.+.++|+++||++.++|++++++++||+|+||++|||||
T Consensus 81 ~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD 160 (162)
T cd07013 81 AKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFAD 160 (162)
T ss_pred CCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q 025670 219 EV 220 (249)
Q Consensus 219 ~I 220 (249)
+|
T Consensus 161 ~i 162 (162)
T cd07013 161 TI 162 (162)
T ss_pred cC
Confidence 86
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=100.00 E-value=1.5e-34 Score=240.03 Aligned_cols=156 Identities=35% Similarity=0.503 Sum_probs=149.7
Q ss_pred EEEEcceeCc---chHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEEccccchHHHHHHh
Q 025670 60 IICINGPIND---DTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLA 136 (249)
Q Consensus 60 iI~L~g~Id~---~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~~~pV~tv~~G~AASaa~~I~~ 136 (249)
-|+|+|+|++ .+++.+.+.|.++..+ ++|.|+||||||++.++++|++.|+.+++||++++.|.|+|+|++|++
T Consensus 2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~ 78 (160)
T cd07016 2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAM 78 (160)
T ss_pred EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHh
Confidence 4899999999 7999999999988753 899999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCC
Q 025670 137 SGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGI 216 (249)
Q Consensus 137 ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~Gl 216 (249)
+|+ +|++.|+++||+|+|+.+..|+..+++...++++++++.+.+.|++++|++.+++.+++.++.||+++||+++||
T Consensus 79 a~d--~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~Gl 156 (160)
T cd07016 79 AGD--EVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGF 156 (160)
T ss_pred cCC--eEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCC
Confidence 999 799999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred ccee
Q 025670 217 IDEV 220 (249)
Q Consensus 217 ID~I 220 (249)
||+|
T Consensus 157 iD~v 160 (160)
T cd07016 157 ADEI 160 (160)
T ss_pred CCcC
Confidence 9986
No 16
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=100.00 E-value=3.3e-33 Score=235.40 Aligned_cols=157 Identities=22% Similarity=0.316 Sum_probs=141.1
Q ss_pred EEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEEc---cccchHHHHHHh
Q 025670 60 IICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTICL---GQAASMGSLLLA 136 (249)
Q Consensus 60 iI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~~~pV~tv~~---G~AASaa~~I~~ 136 (249)
+|.|.|.|++.++..+...|..+.. ++.++|+|+||||||++.++++||++|+.+++||+|+|. |+|+|+|++|++
T Consensus 3 vi~i~G~I~~~~~~~l~~~l~~A~~-~~~~~i~l~inSPGG~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~ 81 (172)
T cd07015 3 VAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL 81 (172)
T ss_pred EEEEeeEECHhHHHHHHHHHHHHhc-CCCCeEEEEEECCCCCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHH
Confidence 6899999999999999888887765 568999999999999999999999999999999999999 999999999999
Q ss_pred cCCCCcEEeccCceEeeecCCCCCCCc-----hhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHH
Q 025670 137 SGTKGERRALPNSTIMIHQPSGGYSGQ-----AKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEEA 211 (249)
Q Consensus 137 ag~kg~R~a~p~s~imiHqp~~~~~G~-----~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA 211 (249)
+|+ +|+|.|++++|.|+|..+ .|+ ..+.+.+..++.++++ +++++|++.+.+++++++++|||++||
T Consensus 82 a~~--~i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~-----~A~~~Gr~~~~a~~~v~~~~~lta~EA 153 (172)
T cd07015 82 GSH--LIAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIKS-----LAQESGRNATIAEEFITKDLSLTPEEA 153 (172)
T ss_pred hcC--ceEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHHH-----HHHHHCcCHHHHHHHHHhhcCcCHHHH
Confidence 999 699999999999999865 355 4566666666666555 999999999999999999999999999
Q ss_pred HHcCCcceecCCCc
Q 025670 212 KEFGIIDEVIDQRP 225 (249)
Q Consensus 212 ~e~GlID~I~~~~~ 225 (249)
++||+||.|..+.+
T Consensus 154 ~~~G~iD~ia~~~~ 167 (172)
T cd07015 154 LKYGVIEVVARDIN 167 (172)
T ss_pred HHcCCceeeeCCHH
Confidence 99999999998753
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=100.00 E-value=1e-31 Score=222.56 Aligned_cols=159 Identities=32% Similarity=0.556 Sum_probs=150.0
Q ss_pred EEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEEccccchHHHHHHhcCC
Q 025670 60 IICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLASGT 139 (249)
Q Consensus 60 iI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~~~pV~tv~~G~AASaa~~I~~ag~ 139 (249)
+|+|+|+|++.+...+.+.|..++.+++.+.|+|++|||||++.++..|++.|+.+++||++++.|.|+|+|++|+++|+
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d 80 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN 80 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC
Confidence 58999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeccCceEeeecCCCCCCCch--hhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCc
Q 025670 140 KGERRALPNSTIMIHQPSGGYSGQA--KDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGII 217 (249)
Q Consensus 140 kg~R~a~p~s~imiHqp~~~~~G~~--~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlI 217 (249)
+|++.|++.+++|+|..+..+.. .+.+...+.+..+++.+.+.+++++|++.+++++.+.++.||+++||+++|||
T Consensus 81 --~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLv 158 (161)
T cd00394 81 --KIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLV 158 (161)
T ss_pred --EEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCc
Confidence 79999999999999987655544 67777778999999999999999999999999999999999999999999999
Q ss_pred cee
Q 025670 218 DEV 220 (249)
Q Consensus 218 D~I 220 (249)
|+|
T Consensus 159 D~i 161 (161)
T cd00394 159 DAL 161 (161)
T ss_pred CcC
Confidence 986
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.96 E-value=1.7e-28 Score=209.14 Aligned_cols=161 Identities=21% Similarity=0.277 Sum_probs=140.9
Q ss_pred EEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEEc---cccchHHHHHHh
Q 025670 60 IICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTICL---GQAASMGSLLLA 136 (249)
Q Consensus 60 iI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~~~pV~tv~~---G~AASaa~~I~~ 136 (249)
+|.|+|.|++..++.+..+|+.+..+ +.+.|.|+||||||++.++..|++.|+.+++||++.|. |.|+|+|++|++
T Consensus 3 vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~ial 81 (187)
T cd07020 3 VLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILL 81 (187)
T ss_pred EEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHH
Confidence 68999999999999999999999864 47899999999999999999999999999999999998 999999999999
Q ss_pred cCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCC
Q 025670 137 SGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGI 216 (249)
Q Consensus 137 ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~Gl 216 (249)
+|+ .|++.|++++++|+|..+..+...+...+.+.+..+.. +...|++++|++.+.+++++..+.||+++||+++||
T Consensus 82 a~D--~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Gl 158 (187)
T cd07020 82 AAH--IAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVA-YIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGV 158 (187)
T ss_pred hCC--ceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCC
Confidence 999 79999999999999985433333344444455555554 577789999999999999999999999999999999
Q ss_pred cceecCCC
Q 025670 217 IDEVIDQR 224 (249)
Q Consensus 217 ID~I~~~~ 224 (249)
||+|++..
T Consensus 159 vd~v~~~~ 166 (187)
T cd07020 159 IDLIAADL 166 (187)
T ss_pred cccccCCH
Confidence 99999764
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.95 E-value=7.9e-27 Score=197.85 Aligned_cols=157 Identities=24% Similarity=0.360 Sum_probs=137.1
Q ss_pred EEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEEccccchHHHHHHhcCC
Q 025670 60 IICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLASGT 139 (249)
Q Consensus 60 iI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~~~pV~tv~~G~AASaa~~I~~ag~ 139 (249)
+|.|.|+|++.++..+...|..+..++ .+.|+|+||||||.+.++..|++.|+.+++||++++.|.|+|+|++|+++|+
T Consensus 3 vi~i~g~I~~~~~~~l~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d 81 (178)
T cd07021 3 VIPIEGEIDPGLAAFVERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD 81 (178)
T ss_pred EEEEeeEECHHHHHHHHHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC
Confidence 689999999999999998898887654 7899999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCC-------------ccc
Q 025670 140 KGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRD-------------YFM 206 (249)
Q Consensus 140 kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d-------------~~l 206 (249)
+++|.|++.++.|+|.....+...+ +.+......+.+.|++++|++.+.++.+++++ .||
T Consensus 82 --~i~m~p~a~iG~~~~v~~~~~~~~~-----~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~l 154 (178)
T cd07021 82 --EIYMAPGATIGAAEPIPGDGNGAAD-----EKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTL 154 (178)
T ss_pred --eEEECCCCeEecCeeEcCCCccchh-----HHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeee
Confidence 7999999999999998655443222 22333344555669999999999999999988 599
Q ss_pred CHHHHHHcCCcceecCCC
Q 025670 207 TPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 207 sa~EA~e~GlID~I~~~~ 224 (249)
|++||+++|++|.|..+.
T Consensus 155 ta~eA~~~g~~d~ia~~~ 172 (178)
T cd07021 155 TADEALKVGYAEGIAGSL 172 (178)
T ss_pred CHHHHHHhCCeEEEECCH
Confidence 999999999999998764
No 20
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.88 E-value=1.5e-21 Score=168.88 Aligned_cols=162 Identities=20% Similarity=0.274 Sum_probs=136.0
Q ss_pred EEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcC--CCEEEEEccccchHHHHHHhc
Q 025670 60 IICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIR--SPINTICLGQAASMGSLLLAS 137 (249)
Q Consensus 60 iI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~~--~pV~tv~~G~AASaa~~I~~a 137 (249)
+|+|.|+|+ .+...+...|..+..++..+.|.|.+|||||++..+..|++.|+.++ +||++++.|.|+|+|++|+++
T Consensus 4 vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~a 82 (207)
T TIGR00706 4 ILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMA 82 (207)
T ss_pred EEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhc
Confidence 689999998 55778889999888878889999999999999999999999999998 999999999999999999999
Q ss_pred CCCCcEEeccCceEeeecCCCC------------------CCC------------chhhHHHHHHHHHHHHHHHHHHHHH
Q 025670 138 GTKGERRALPNSTIMIHQPSGG------------------YSG------------QAKDMTIHTKQIVRVWDALNALYCK 187 (249)
Q Consensus 138 g~kg~R~a~p~s~imiHqp~~~------------------~~G------------~~~di~~~a~~l~~~~~~~~~~ya~ 187 (249)
|+ +|++.|++.++...+... ..| +.++.+.....++.+.+.|.+.+++
T Consensus 83 aD--~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~ 160 (207)
T TIGR00706 83 AD--EIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQFVQVVAK 160 (207)
T ss_pred CC--EEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99 799999998765332210 011 1223344446677889999999999
Q ss_pred hhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 188 HTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 188 ~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
.+|++.+++++.++.. .|+++||+++||||+|...++
T Consensus 161 ~R~~~~~~~~~~~~~~-~~~~~~A~~~gLvD~i~~~~~ 197 (207)
T TIGR00706 161 GRNLPVEDVKKFADGR-VFTGRQALKLRLVDKLGTEDD 197 (207)
T ss_pred cCCCCHHHHHHHhcCC-cccHHHHHHcCCCcccCCHHH
Confidence 9999999999888765 469999999999999987654
No 21
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.88 E-value=4.3e-22 Score=182.73 Aligned_cols=163 Identities=23% Similarity=0.280 Sum_probs=134.5
Q ss_pred EEEEcceeCcch-------HHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCC--CEEEEEccccchH
Q 025670 60 IICINGPINDDT-------AHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRS--PINTICLGQAASM 130 (249)
Q Consensus 60 iI~L~g~Id~~~-------a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~~~--pV~tv~~G~AASa 130 (249)
+|.+.|.|.... .+.+.+.|+.+..++++++|.|.||||||+|.++..||+.|+.++. ||++++.++|||+
T Consensus 63 vi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AASG 142 (317)
T COG0616 63 VIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAASG 142 (317)
T ss_pred EEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeecch
Confidence 688899998654 6778888888889889999999999999999999999999999864 7999999999999
Q ss_pred HHHHHhcCCCCcEEeccCceEeeecCCCC-----------------------------CCC-chhhHHHHHHHHHHHHHH
Q 025670 131 GSLLLASGTKGERRALPNSTIMIHQPSGG-----------------------------YSG-QAKDMTIHTKQIVRVWDA 180 (249)
Q Consensus 131 a~~I~~ag~kg~R~a~p~s~imiHqp~~~-----------------------------~~G-~~~di~~~a~~l~~~~~~ 180 (249)
||||+++++ +++|.|+|.++.-.|..+ +.. +.++.+...++++...+.
T Consensus 143 GY~IA~aAd--~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~~ 220 (317)
T COG0616 143 GYYIALAAD--KIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDE 220 (317)
T ss_pred hhhhhccCC--EEEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHHH
Confidence 999999999 799999998764332211 011 123333444677888999
Q ss_pred HHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 181 LNALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 181 ~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
|.+.+++.++.+.+.+.+..+ +..+++++|++.||||++.+.++
T Consensus 221 F~~~V~~~R~~~~~~~~~~a~-g~v~~g~~A~~~gLVDelg~~~~ 264 (317)
T COG0616 221 FVDKVAEGRGLSDEAVDKLAT-GRVWTGQQALELGLVDELGGLDD 264 (317)
T ss_pred HHHHHHhcCCCChhHHHHHhc-cceecHHHhhhcCCchhcCCHHH
Confidence 999999999999998766555 56669999999999999998765
No 22
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.87 E-value=8e-21 Score=164.10 Aligned_cols=162 Identities=25% Similarity=0.311 Sum_probs=135.8
Q ss_pred EEEEcceeC---cchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhc---CCCEEEEEccccchHHHH
Q 025670 60 IICINGPIN---DDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYI---RSPINTICLGQAASMGSL 133 (249)
Q Consensus 60 iI~L~g~Id---~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~---~~pV~tv~~G~AASaa~~ 133 (249)
+|+|.|+|+ +.+...+..+|..+..++..+.|.|.+|||||++..+..+++.++.. ++||++++.|.|+|+|++
T Consensus 4 vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~ 83 (208)
T cd07023 4 VIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGYY 83 (208)
T ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHHH
Confidence 689999999 78999999999999988889999999999999999999999988654 579999999999999999
Q ss_pred HHhcCCCCcEEeccCceEeeecCCC------------------CCCC------------chhhHHHHHHHHHHHHHHHHH
Q 025670 134 LLASGTKGERRALPNSTIMIHQPSG------------------GYSG------------QAKDMTIHTKQIVRVWDALNA 183 (249)
Q Consensus 134 I~~ag~kg~R~a~p~s~imiHqp~~------------------~~~G------------~~~di~~~a~~l~~~~~~~~~ 183 (249)
|+++|+ +|++.|++.++...+.. ...| ..++.+.....++.+++.|.+
T Consensus 84 lA~aaD--~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~ 161 (208)
T cd07023 84 IAAAAD--KIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFVD 161 (208)
T ss_pred HHhhCC--EEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999 79999999875332110 0011 123445555778888999999
Q ss_pred HHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 184 LYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 184 ~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
.+++.+|++.+++.+..+.+. |++++|+++||||+|...+
T Consensus 162 ~Va~~R~~~~~~~~~~~~~~~-~~a~~A~~~gLiD~i~~~~ 201 (208)
T cd07023 162 VVAEGRGMSGERLDKLADGRV-WTGRQALELGLVDELGGLD 201 (208)
T ss_pred HHHhcCCCCHHHHHHhcCCcE-EEHHHHHHcCCCcccCCHH
Confidence 999999999999998777555 5899999999999998754
No 23
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.86 E-value=1.2e-20 Score=159.21 Aligned_cols=145 Identities=21% Similarity=0.173 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHH---hcCCCEEEEEccccchHHHHHHhcCCCCcEEecc
Q 025670 71 TAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQ---YIRSPINTICLGQAASMGSLLLASGTKGERRALP 147 (249)
Q Consensus 71 ~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~---~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p 147 (249)
+...+...|..+..++..+.|+|.+|||||++.....+++.++ .+++||++++.|.|+|+|++|+++|+ .+++.|
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D--~i~a~~ 100 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPAN--YIVANP 100 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCC--EEEECC
Confidence 4578889999998888889999999999999988888877655 45799999999999999999999999 799999
Q ss_pred CceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 148 NSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 148 ~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
++.|++|.+..+ .+.....+..+++.+.+.+++.+|++.+.+.+++....+|+|+||+++||||+|...+
T Consensus 101 ~a~~~~~G~~~~-------~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~~ 170 (177)
T cd07014 101 STLVGSIGIFGV-------QLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSFD 170 (177)
T ss_pred CCeEEEechHhh-------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCCHH
Confidence 999999976643 1222356778999999999999999999999999888999999999999999999753
No 24
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.86 E-value=9.4e-21 Score=186.29 Aligned_cols=163 Identities=21% Similarity=0.226 Sum_probs=135.2
Q ss_pred EEEEcceeCcc-------hHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhc---CCCEEEEEccccch
Q 025670 60 IICINGPINDD-------TAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYI---RSPINTICLGQAAS 129 (249)
Q Consensus 60 iI~L~g~Id~~-------~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~---~~pV~tv~~G~AAS 129 (249)
+|++.|+|.+. ..+.+.++|..+..++..+.|+|+||||||++.++..|++.|+.. ++||++++.|+|+|
T Consensus 312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaS 391 (584)
T TIGR00705 312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAAS 391 (584)
T ss_pred EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence 89999999853 256788889888888888999999999999999999999998754 58999999999999
Q ss_pred HHHHHHhcCCCCcEEeccCceE------eeecC------------C---CC-C-------CCchhhHHHHHHHHHHHHHH
Q 025670 130 MGSLLLASGTKGERRALPNSTI------MIHQP------------S---GG-Y-------SGQAKDMTIHTKQIVRVWDA 180 (249)
Q Consensus 130 aa~~I~~ag~kg~R~a~p~s~i------miHqp------------~---~~-~-------~G~~~di~~~a~~l~~~~~~ 180 (249)
+||+|+++|+ ++++.|++.+ +.+.. . .+ . ..+.++.+.....+++.++.
T Consensus 392 ggY~iA~aaD--~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~ 469 (584)
T TIGR00705 392 GGYWIASAAD--YIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRR 469 (584)
T ss_pred HHHHHHHhCC--EEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999 7999999976 33310 0 00 0 11345556666788899999
Q ss_pred HHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 181 LNALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 181 ~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
|.+.+++.+|++.++++.+.+... |+++||+++||||+|..-.+
T Consensus 470 F~~~Va~~R~l~~e~v~~ia~Grv-~tg~eA~~~GLVD~ig~~~~ 513 (584)
T TIGR00705 470 FLSVVSAGRNLTPTQVDKVAQGRV-WTGEDAVSNGLVDALGGLDE 513 (584)
T ss_pred HHHHHHhhCCCCHHHHHHHHhCCC-cCHHHHHHcCCcccCCCHHH
Confidence 999999999999999998887655 59999999999999987644
No 25
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.85 E-value=3.5e-20 Score=161.01 Aligned_cols=162 Identities=17% Similarity=0.236 Sum_probs=133.7
Q ss_pred EEEEcceeCc-----------chHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcC--CCEEEEEccc
Q 025670 60 IICINGPIND-----------DTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIR--SPINTICLGQ 126 (249)
Q Consensus 60 iI~L~g~Id~-----------~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~~--~pV~tv~~G~ 126 (249)
+|.|.|+|.+ .+...+.+.|..++.++..+.|+|.+|||||++.....|++.|+.++ +||++++.|+
T Consensus 4 vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~ 83 (214)
T cd07022 4 VIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGL 83 (214)
T ss_pred EEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 4667777766 35688999999999888899999999999999999999999999887 9999999999
Q ss_pred cchHHHHHHhcCCCCcEEeccCceEeeecCCCC------------------CCC------------chhhHHHHHHHHHH
Q 025670 127 AASMGSLLLASGTKGERRALPNSTIMIHQPSGG------------------YSG------------QAKDMTIHTKQIVR 176 (249)
Q Consensus 127 AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~------------------~~G------------~~~di~~~a~~l~~ 176 (249)
|+|+|++|+++|+ ++++.|++.++....... ..| +..+.+...+.+..
T Consensus 84 a~s~gy~lA~~aD--~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~ 161 (214)
T cd07022 84 AASAAYWIASAAD--RIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDA 161 (214)
T ss_pred hhhHHHHHHhcCC--EEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999 799999998754322110 011 12334445567788
Q ss_pred HHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 177 VWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 177 ~~~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
+++.|.+.+++.+|++.+++++.+ ...|+++||+++||||+|...++
T Consensus 162 ~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~ 208 (214)
T cd07022 162 LYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDD 208 (214)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHH
Confidence 899999999999999999998877 66689999999999999987543
No 26
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.82 E-value=5.2e-19 Score=153.43 Aligned_cols=163 Identities=23% Similarity=0.188 Sum_probs=132.4
Q ss_pred EEEEcceeCcch-------HHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHH---hcCCCEEEEEccccch
Q 025670 60 IICINGPINDDT-------AHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQ---YIRSPINTICLGQAAS 129 (249)
Q Consensus 60 iI~L~g~Id~~~-------a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~---~~~~pV~tv~~G~AAS 129 (249)
+|++.|+|.+.. ...+...|..+..++..+.|+|.+|||||++.....+++.|+ .+++||++++.|.|+|
T Consensus 4 v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s 83 (211)
T cd07019 4 VVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAAS 83 (211)
T ss_pred EEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeehh
Confidence 688999998753 467889999999888889999999999999999988888654 5678999999999999
Q ss_pred HHHHHHhcCCCCcEEeccCceEeeecCC------------CC------CC-C----------chhhHHHHHHHHHHHHHH
Q 025670 130 MGSLLLASGTKGERRALPNSTIMIHQPS------------GG------YS-G----------QAKDMTIHTKQIVRVWDA 180 (249)
Q Consensus 130 aa~~I~~ag~kg~R~a~p~s~imiHqp~------------~~------~~-G----------~~~di~~~a~~l~~~~~~ 180 (249)
+|++|+++|+ ++++.|++.++..... .| .. | +.++-+.....++.+++.
T Consensus 84 ~gy~la~~aD--~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~~ 161 (211)
T cd07019 84 GGYWISTPAN--YIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYKR 161 (211)
T ss_pred HHHHHHHhCC--EEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999 7999999987644321 00 01 1 112223334567889999
Q ss_pred HHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 181 LNALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 181 ~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
|.+.+++.++++++.+++..+ +.+|+++||+++||||+|.+.++
T Consensus 162 f~~~Va~~R~~~~~~l~~~~~-~~~~~~~~A~~~GLvD~i~~~~~ 205 (211)
T cd07019 162 FITLVADARHSTPEQIDKIAQ-GHVWTGQDAKANGLVDSLGDFDD 205 (211)
T ss_pred HHHHHHhhCCCCHHHHHHhcC-CcEEeHHHHHHcCCcccCCCHHH
Confidence 999999999999999988655 67889999999999999987643
No 27
>PRK10949 protease 4; Provisional
Probab=99.82 E-value=2.5e-19 Score=176.84 Aligned_cols=163 Identities=23% Similarity=0.216 Sum_probs=133.1
Q ss_pred EEEEcceeCcc-------hHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhc---CCCEEEEEccccch
Q 025670 60 IICINGPINDD-------TAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYI---RSPINTICLGQAAS 129 (249)
Q Consensus 60 iI~L~g~Id~~-------~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~---~~pV~tv~~G~AAS 129 (249)
||++.|.|.+. ..+.+..+|+.+..++..+.|+|.||||||++.++..|++.|+.. ++||++++.++|||
T Consensus 330 vi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aAS 409 (618)
T PRK10949 330 VIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAAS 409 (618)
T ss_pred EEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCcc
Confidence 89999999764 356788999999999999999999999999999999999998654 58999999999999
Q ss_pred HHHHHHhcCCCCcEEeccCceEee------ecCC------CC------CCC-----------chhhHHHHHHHHHHHHHH
Q 025670 130 MGSLLLASGTKGERRALPNSTIMI------HQPS------GG------YSG-----------QAKDMTIHTKQIVRVWDA 180 (249)
Q Consensus 130 aa~~I~~ag~kg~R~a~p~s~imi------Hqp~------~~------~~G-----------~~~di~~~a~~l~~~~~~ 180 (249)
+||||+++|+ ++++.|++.++. |.-. .| ..| +.++-+.....++..++.
T Consensus 410 ggY~iA~aad--~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~~ 487 (618)
T PRK10949 410 GGYWISTPAN--YIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYKR 487 (618)
T ss_pred HHHHHHHhcC--EEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999 799999876543 2100 00 011 122333444667888999
Q ss_pred HHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 181 LNALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 181 ~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
|.+.+++.++++.+++++..+ +..+++++|+++||||++...++
T Consensus 488 F~~~Va~~R~~~~~~v~~ia~-Grv~tg~~A~~~GLVD~lG~~~~ 531 (618)
T PRK10949 488 FITLVADSRHKTPEQIDKIAQ-GHVWTGQDAKANGLVDSLGDFDD 531 (618)
T ss_pred HHHHHHhhCCCCHHHHHHHhc-CCcccHHHHHHcCCCccCCCHHH
Confidence 999999999999999988655 56789999999999999998655
No 28
>PRK11778 putative inner membrane peptidase; Provisional
Probab=99.78 E-value=5.5e-18 Score=155.75 Aligned_cols=161 Identities=15% Similarity=0.171 Sum_probs=115.2
Q ss_pred cEEEEcceeCcchHHHHHHHHHHhh-hcCCCCCeEEEEeCCCCcHHHHHHHHHH---HHhcCCCEEEEEccccchHHHHH
Q 025670 59 RIICINGPINDDTAHVVVAQLLFLE-SENPSKPIHMYLNSPGGQVTAGLAIYDT---MQYIRSPINTICLGQAASMGSLL 134 (249)
Q Consensus 59 riI~L~g~Id~~~a~~i~a~L~~l~-~~~~~~~I~l~INSPGG~V~ag~aIyd~---i~~~~~pV~tv~~G~AASaa~~I 134 (249)
-+|.+.|+|+......+...+..+. ...+.+.|+|.||||||+|.+...++.. ++..++||++++.++|||+||||
T Consensus 93 ~VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~i 172 (330)
T PRK11778 93 FVLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMM 172 (330)
T ss_pred EEEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHH
Confidence 3789999999876544433333221 1122368999999999999875555554 45556899999999999999999
Q ss_pred HhcCCCCcEEeccCceEeeecCCCC------------------CCC------------chhhHHHHHHHHHHHHHHHHHH
Q 025670 135 LASGTKGERRALPNSTIMIHQPSGG------------------YSG------------QAKDMTIHTKQIVRVWDALNAL 184 (249)
Q Consensus 135 ~~ag~kg~R~a~p~s~imiHqp~~~------------------~~G------------~~~di~~~a~~l~~~~~~~~~~ 184 (249)
+++|+ ++++.|.+.++....... ..| +.++-+...++++.+++.|.+.
T Consensus 173 AsaAD--~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see~Re~~q~~Ld~~y~~F~~~ 250 (330)
T PRK11778 173 ACVAD--KIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEETHQLFKDF 250 (330)
T ss_pred HHhCC--EEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 899999998875432211 011 1223344456678888999999
Q ss_pred HHHhhC-CCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 185 YCKHTG-QSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 185 ya~~tg-~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
++++++ .+ +++..+. ..+++++|+++||||+|.+.++
T Consensus 251 Va~~R~~l~---~~~va~G-~v~~g~~Al~~GLVD~Ig~~dd 288 (330)
T PRK11778 251 VQRYRPQLD---IDKVATG-EHWYGQQALELGLVDEIQTSDD 288 (330)
T ss_pred HHhcCCcCC---HHHHHhC-CCcCHHHHHHCCCCCcCCCHHH
Confidence 998875 33 3444444 4569999999999999998765
No 29
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.76 E-value=1.8e-17 Score=144.89 Aligned_cols=158 Identities=16% Similarity=0.153 Sum_probs=129.6
Q ss_pred cceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHh---cCCCEEEEEccccchHHHHHHhcCCC
Q 025670 64 NGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQY---IRSPINTICLGQAASMGSLLLASGTK 140 (249)
Q Consensus 64 ~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~---~~~pV~tv~~G~AASaa~~I~~ag~k 140 (249)
.+..+......+..+|..+..++..+.|+|.+|||||.+.+...|++.|+. .++||++++.+ |+|+|++|+++|+
T Consensus 23 ~~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad- 100 (222)
T cd07018 23 GGESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAAD- 100 (222)
T ss_pred cCCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCC-
Confidence 344556678899999999998888999999999999999999999999865 46899999987 9999999999999
Q ss_pred CcEEeccCceEeeecCCCCC------------------CC--------------chhhHHHHHHHHHHHHHHHHHHHHHh
Q 025670 141 GERRALPNSTIMIHQPSGGY------------------SG--------------QAKDMTIHTKQIVRVWDALNALYCKH 188 (249)
Q Consensus 141 g~R~a~p~s~imiHqp~~~~------------------~G--------------~~~di~~~a~~l~~~~~~~~~~ya~~ 188 (249)
++++.|++.++++.+.... .| +..+-+...+.+..+++.|.+.+++.
T Consensus 101 -~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~Va~~ 179 (222)
T cd07018 101 -EIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAAS 179 (222)
T ss_pred -EEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999987543210 01 11222333456777899999999999
Q ss_pred hCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 189 TGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 189 tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
++++.+.+++..+ ...+++++|++.||||+|...++
T Consensus 180 R~~~~~~~~~~~~-~~~~~~~~A~~~GLvD~i~~~~e 215 (222)
T cd07018 180 RGLSPDALEALID-LGGDSAEEALEAGLVDGLAYRDE 215 (222)
T ss_pred cCCCHHHHHHHHH-cCCcHHHHHHHCCCCCcCCcHHH
Confidence 9999999988777 56779999999999999997543
No 30
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8e-17 Score=151.22 Aligned_cols=158 Identities=22% Similarity=0.260 Sum_probs=134.2
Q ss_pred cEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEE---ccccchHHHHHH
Q 025670 59 RIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTIC---LGQAASMGSLLL 135 (249)
Q Consensus 59 riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~~~pV~tv~---~G~AASaa~~I~ 135 (249)
.++.+.|+|++.+++.+.+.|..+++++ ...++|.+|+|||-+.+...|.+.+..++.||+.++ .++|+|+|++|+
T Consensus 29 ~vi~i~g~I~~~s~~~l~r~l~~A~~~~-a~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~ 107 (436)
T COG1030 29 YVIEIDGAIDPASADYLQRALQSAEEEN-AAAVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYIL 107 (436)
T ss_pred EEEEecCccCHHHHHHHHHHHHHHHhCC-CcEEEEEecCCCchHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHH
Confidence 4689999999999999999999887654 679999999999999999999999999999988888 357999999999
Q ss_pred hcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcC
Q 025670 136 ASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFG 215 (249)
Q Consensus 136 ~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~G 215 (249)
++++ ..+|.|.+.++-.+|-... |+..+-+. .......+.+..++.+|++.+..+++...+.-++++||.+.|
T Consensus 108 m~~h--iaaMAPgT~iGaa~Pi~~~-g~~~~~~~----~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~ 180 (436)
T COG1030 108 MATH--IAAMAPGTNIGAATPIAGG-GTSAKEAN----TTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQG 180 (436)
T ss_pred HhcC--hhhhCCCCcccccceecCC-CCCccchh----hHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcC
Confidence 9999 7999999999999997543 32222221 222333445668999999999999999999999999999999
Q ss_pred CcceecCCC
Q 025670 216 IIDEVIDQR 224 (249)
Q Consensus 216 lID~I~~~~ 224 (249)
+||-|..+.
T Consensus 181 vid~iA~~~ 189 (436)
T COG1030 181 VIDLIARDL 189 (436)
T ss_pred ccccccCCH
Confidence 999998764
No 31
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=99.69 E-value=7.5e-16 Score=137.18 Aligned_cols=164 Identities=27% Similarity=0.346 Sum_probs=120.8
Q ss_pred CCcccchhhhhccCcE----EEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCCEE
Q 025670 45 GERAYDIFSRLLKERI----ICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPIN 120 (249)
Q Consensus 45 g~~~~di~~~l~~~ri----I~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~~~pV~ 120 (249)
|.+...++++ +|++ |.+...|+.+.++.+...++... +.++|.|.||||||.|.++..|.+.++.++.+++
T Consensus 48 ~srvI~~Ihr--qe~~~~~giPi~~~I~i~dse~v~raI~~~~---~~~~IdLii~TpGG~v~AA~~I~~~l~~~~~~v~ 122 (285)
T PF01972_consen 48 GSRVITLIHR--QERVSFLGIPIYRYIDIDDSEFVLRAIREAP---KDKPIDLIIHTPGGLVDAAEQIARALREHPAKVT 122 (285)
T ss_pred CCEEEEEEEe--ccccceeccccceeEcHhhHHHHHHHHHhcC---CCCceEEEEECCCCcHHHHHHHHHHHHhCCCCEE
Confidence 4455555555 3443 35567789888999988877543 4578999999999999999999999999999999
Q ss_pred EEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCC--------------chhhH----H-HHHHHHHHHHHHH
Q 025670 121 TICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSG--------------QAKDM----T-IHTKQIVRVWDAL 181 (249)
Q Consensus 121 tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G--------------~~~di----~-~~a~~l~~~~~~~ 181 (249)
++|...|.|+|++|+++|+ +++|.|+|.++--.|..+-.. ..+|. . ...+.+.++++..
T Consensus 123 v~VP~~A~SAGTlIALaAD--eIvM~p~a~LGpiDPqi~~~pA~sil~~~~~K~~~~i~D~tlIladia~KAi~q~~~~v 200 (285)
T PF01972_consen 123 VIVPHYAMSAGTLIALAAD--EIVMGPGAVLGPIDPQIGQYPAASILKAVEQKPPDEIDDQTLILADIAEKAIRQVREFV 200 (285)
T ss_pred EEECcccccHHHHHHHhCC--eEEECCCCccCCCCccccCCChHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 899999999998888754211 11110 0 1123445556555
Q ss_pred HHHHHHhhCCCHHHHHhh---h-----cCCcccCHHHHHHcCCc
Q 025670 182 NALYCKHTGQSIEVIQKN---M-----DRDYFMTPEEAKEFGII 217 (249)
Q Consensus 182 ~~~ya~~tg~~~~~i~~~---~-----~~d~~lsa~EA~e~GlI 217 (249)
.+++..+ .+.++.++. + .+|..++.+||+++||=
T Consensus 201 ~~lL~~~--~~~eka~~ia~~L~~g~~tHdypi~~eea~~lGL~ 242 (285)
T PF01972_consen 201 KELLKDK--MDEEKAEEIAEKLSSGKWTHDYPITVEEAKELGLP 242 (285)
T ss_pred HHHHHcC--CCHHHHHHHHHHhcCCCCCCCCCCCHHHHHHcCCC
Confidence 5555444 444444432 2 36889999999999973
No 32
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.44 E-value=1.5e-12 Score=128.47 Aligned_cols=153 Identities=8% Similarity=0.023 Sum_probs=122.6
Q ss_pred chHHHHHHHHHHhhhcCCCCCeEEEEeC-CCCcHHHHHHHHHHHHhc---CCCEEEEEccccchHHHHHHhcCCCCcEEe
Q 025670 70 DTAHVVVAQLLFLESENPSKPIHMYLNS-PGGQVTAGLAIYDTMQYI---RSPINTICLGQAASMGSLLLASGTKGERRA 145 (249)
Q Consensus 70 ~~a~~i~a~L~~l~~~~~~~~I~l~INS-PGG~V~ag~aIyd~i~~~---~~pV~tv~~G~AASaa~~I~~ag~kg~R~a 145 (249)
-....++.+|+.+..++..+.|+|.+|+ |||.+.....|++.|+.. ++||+++..+. +|.+|+|+++++ ++|+
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~-~s~~YylAs~AD--~I~~ 152 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNY-SQGQYYLASFAD--EIIL 152 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEccc-cchhhhhhhhCC--EEEE
Confidence 4677899999999999999999999996 678888889999998855 58999987654 799999999999 7999
Q ss_pred ccCceEeeecCCCC------------------CCC--------------chhhHHHHHHHHHHHHHHHHHHHHHhhCCCH
Q 025670 146 LPNSTIMIHQPSGG------------------YSG--------------QAKDMTIHTKQIVRVWDALNALYCKHTGQSI 193 (249)
Q Consensus 146 ~p~s~imiHqp~~~------------------~~G--------------~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~ 193 (249)
.|.+.++++..... ..| +.++-+....++..+++.+.+.+++.++++.
T Consensus 153 ~p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~epf~r~~mS~e~re~~~~~l~~l~~~f~~~Va~~R~l~~ 232 (584)
T TIGR00705 153 NPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPEARRNYQRWLGELWQNYLSSVSRNRAIPV 232 (584)
T ss_pred CCCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 99999877643211 011 1222334456778899999999999999999
Q ss_pred HHHHhhhcCCcc-------cCHHHHHHcCCcceecCCCc
Q 025670 194 EVIQKNMDRDYF-------MTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 194 ~~i~~~~~~d~~-------lsa~EA~e~GlID~I~~~~~ 225 (249)
+++.+..+.-.| .++++|++.||||+|...++
T Consensus 233 ~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~~de 271 (584)
T TIGR00705 233 QQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCSYAE 271 (584)
T ss_pred HHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCCHHH
Confidence 999887664333 38999999999999997654
No 33
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=99.39 E-value=4.2e-12 Score=105.02 Aligned_cols=111 Identities=22% Similarity=0.210 Sum_probs=82.7
Q ss_pred HHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCC------------------CCC-----------
Q 025670 112 MQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGG------------------YSG----------- 162 (249)
Q Consensus 112 i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~------------------~~G----------- 162 (249)
.+..++||++++.++|+|++++|+++|+ ++++.|.+.++....... ..|
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad--~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~ 79 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAAD--EIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDP 79 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSS--EEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCC--EEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCC
Confidence 3567899999999999999999999999 799999998875432210 011
Q ss_pred -chhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 163 -QAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 163 -~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
+.++.+...+.++.+.+.|.+.+++.+|++.+++++..+. ..|++++|+++||||+|...++
T Consensus 80 ~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~-~~~~~~~A~~~GLiD~i~~~~~ 142 (154)
T PF01343_consen 80 MSEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADG-GVFTAQQALELGLIDEIGTFDE 142 (154)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCC-HEEEHHHHHHTTSSSEETSHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhh-ccccHHHHHHcCchhhcCCHHH
Confidence 1233344456778889999999999999999999988775 7889999999999999987543
No 34
>PRK10949 protease 4; Provisional
Probab=99.35 E-value=1.3e-11 Score=122.47 Aligned_cols=154 Identities=10% Similarity=0.065 Sum_probs=119.1
Q ss_pred chHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHH-HHHHHHHHhc---CCCEEEEEccccchHHHHHHhcCCCCcEEe
Q 025670 70 DTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAG-LAIYDTMQYI---RSPINTICLGQAASMGSLLLASGTKGERRA 145 (249)
Q Consensus 70 ~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag-~aIyd~i~~~---~~pV~tv~~G~AASaa~~I~~ag~kg~R~a 145 (249)
-....++.+|+.+..++..+.|+|.+|||||...+. ..|++.|+.. ++||+++ ...++|.+|+|+++++ ++|+
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaAD--~I~l 171 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFAN--KIYL 171 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhCC--EEEE
Confidence 345679999999999999999999999998876554 7899888655 5899986 6666899999999999 7999
Q ss_pred ccCceEeeecCCCCC------------------CC--------------chhhHHHHHHHHHHHHHHHHHHHHHhhCCCH
Q 025670 146 LPNSTIMIHQPSGGY------------------SG--------------QAKDMTIHTKQIVRVWDALNALYCKHTGQSI 193 (249)
Q Consensus 146 ~p~s~imiHqp~~~~------------------~G--------------~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~ 193 (249)
.|.+.++++...... .| +.++-+....++..+++.+.+.+++.++++.
T Consensus 172 ~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~epf~r~~mS~e~Re~~~~ll~~l~~~f~~~VA~~R~l~~ 251 (618)
T PRK10949 172 SPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQITP 251 (618)
T ss_pred CCCceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 999999877543210 11 1122233446678889999999999999999
Q ss_pred HHHHhhhc----C---CcccCHHHHHHcCCcceecCCCcc
Q 025670 194 EVIQKNMD----R---DYFMTPEEAKEFGIIDEVIDQRPM 226 (249)
Q Consensus 194 ~~i~~~~~----~---d~~lsa~EA~e~GlID~I~~~~~~ 226 (249)
+.+....+ . ...++|++|++.||||+|...++.
T Consensus 252 ~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~de~ 291 (618)
T PRK10949 252 QQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALASSAEI 291 (618)
T ss_pred HHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCCHHHH
Confidence 99854332 1 123599999999999999987653
No 35
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=98.99 E-value=1.7e-08 Score=85.23 Aligned_cols=145 Identities=17% Similarity=0.172 Sum_probs=99.8
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe----CCCCcHH-----------------HHHHHHHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN----SPGGQVT-----------------AGLAIYDTMQ 113 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN----SPGG~V~-----------------ag~aIyd~i~ 113 (249)
+|.|+.+ ++.++.+.+.+.+..++.++..+.|+|.-+ |+|+++. ....++..+.
T Consensus 11 ~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (195)
T cd06558 11 TITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALL 90 (195)
T ss_pred EEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHH
Confidence 3555555 466788889999998887655555555444 4555543 2244556667
Q ss_pred hcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCH
Q 025670 114 YIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSI 193 (249)
Q Consensus 114 ~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~ 193 (249)
.+++|+++.+.|.|.+.|..+++++| .|++.+++.+.+..+..+..-...- ...+.+..| .
T Consensus 91 ~~~~p~Ia~v~G~a~g~G~~la~~~D--~~i~~~~~~~~~pe~~~G~~p~~g~---------------~~~l~~~~g--~ 151 (195)
T cd06558 91 RLPKPVIAAVNGAALGGGLELALACD--IRIAAEDAKFGLPEVKLGLVPGGGG---------------TQRLPRLVG--P 151 (195)
T ss_pred cCCCCEEEEECCeeecHHHHHHHhCC--EEEecCCCEEechhhhcCCCCCCcH---------------HHHHHHHhC--H
Confidence 78999999999999999999999999 8999999999887655442210000 111222223 3
Q ss_pred HHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 025670 194 EVIQKNMDRDYFMTPEEAKEFGIIDEVIDQ 223 (249)
Q Consensus 194 ~~i~~~~~~d~~lsa~EA~e~GlID~I~~~ 223 (249)
....+++-....++++||+++|++|++++.
T Consensus 152 ~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~ 181 (195)
T cd06558 152 ARARELLLTGRRISAEEALELGLVDEVVPD 181 (195)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCCCeecCh
Confidence 333444555788899999999999999986
No 36
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=98.90 E-value=2.9e-08 Score=85.42 Aligned_cols=152 Identities=17% Similarity=0.140 Sum_probs=108.1
Q ss_pred EEEEcceeCcchHHHHHHHHHHhhhcCCCCCeE-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEEccccchHHHHHHhcC
Q 025670 60 IICINGPINDDTAHVVVAQLLFLESENPSKPIH-MYLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLASG 138 (249)
Q Consensus 60 iI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~-l~INSPGG~V~ag~aIyd~i~~~~~pV~tv~~G~AASaa~~I~~ag 138 (249)
-+.+++++-+..+......+. ...+...++ +-+|||||+|..++++...++..+..+.+--..+|+|++.++|++|
T Consensus 78 ~VvVse~~a~~da~sal~~li---r~~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~gfdt~v~s~A~CasaCpl~fagG 154 (245)
T COG3904 78 PVVVSEPGANVDAASALGRLI---RKAGLYIATGVTLNSPGGSVAKACSMGKLIREDGFDTAVDSGAMCASACPLMFAGG 154 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHH---hccCceeEEEEEecCCCCcHHHHHhhhhhhhhcccCccccchhhhhccchhhhhcc
Confidence 455667766654444444443 233344455 7899999999999999999999998888888899999999999999
Q ss_pred CCCcEEeccCceEeeecCCCCCCCc-hhhHHHHHHHH-HHHHHHHHHHHHHhhCCCHHHHHhhhc----CCcccCHHHHH
Q 025670 139 TKGERRALPNSTIMIHQPSGGYSGQ-AKDMTIHTKQI-VRVWDALNALYCKHTGQSIEVIQKNMD----RDYFMTPEEAK 212 (249)
Q Consensus 139 ~kg~R~a~p~s~imiHqp~~~~~G~-~~di~~~a~~l-~~~~~~~~~~ya~~tg~~~~~i~~~~~----~d~~lsa~EA~ 212 (249)
. .|++.+.+.|++||+.....-. .... ++... .+...+ ...|....|....-++.+.. +=++++.+|-.
T Consensus 155 v--rRvve~~ayiGVHq~~~~g~~~r~~~~--~a~Sanq~~tar-~a~ylrEMgigpgLlq~ml~tpp~dir~l~~kem~ 229 (245)
T COG3904 155 V--RRVVEDFAYIGVHQITTTGRRERIVNG--KAKSANQKVTAR-LAAYLREMGIGPGLLQMMLATPPSDIRQLGLKEMT 229 (245)
T ss_pred e--eeeecccceeeeeeccccCCccccCcH--hhhhhhhhhHHH-HHHHHHHcCCCHHHHHHHhcCChHhhhhhhHHHHh
Confidence 8 7999999999999998653221 1111 11111 122223 23467778998887766554 44899999999
Q ss_pred HcCCcce
Q 025670 213 EFGIIDE 219 (249)
Q Consensus 213 e~GlID~ 219 (249)
+|.|+.+
T Consensus 230 ~~~L~t~ 236 (245)
T COG3904 230 AMKLVTS 236 (245)
T ss_pred hhccccc
Confidence 9988764
No 37
>PRK05869 enoyl-CoA hydratase; Validated
Probab=98.79 E-value=2e-07 Score=81.49 Aligned_cols=145 Identities=17% Similarity=0.164 Sum_probs=98.0
Q ss_pred EEEEcce----eCcchHHHHHHHHHHhhhcCCCCCeEEEEeCC------CCcHHHH---------------HHHHHHHHh
Q 025670 60 IICINGP----INDDTAHVVVAQLLFLESENPSKPIHMYLNSP------GGQVTAG---------------LAIYDTMQY 114 (249)
Q Consensus 60 iI~L~g~----Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSP------GG~V~ag---------------~aIyd~i~~ 114 (249)
+|.|+.| ++.++...+...+..++.++..+.|+| .+. |+++... ..+++.|..
T Consensus 20 ~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl--tg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~ 97 (222)
T PRK05869 20 TLLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVIL--YGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAA 97 (222)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE--ECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHh
Confidence 4666666 677788889889988887665554444 443 4443321 235566778
Q ss_pred cCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHH
Q 025670 115 IRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIE 194 (249)
Q Consensus 115 ~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~ 194 (249)
+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|.. ....- ...+.+..| ..
T Consensus 98 ~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~~~ig--~~ 158 (222)
T PRK05869 98 IPKPTVAAITGYALGAGLTLALAAD--WRVSGDNVKFGATEILAGLA---PSGDG------------MARLTRAAG--PS 158 (222)
T ss_pred CCCCEEEEEcCEeecHHHHHHHhCC--EEEecCCCEEcCchhccCCC---CCccH------------HHHHHHHhC--HH
Confidence 8999999999999999999999999 79999999887644333321 11100 001222233 23
Q ss_pred HHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 195 VIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 195 ~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
...+++-...+++|+||+++||+|++.+..+
T Consensus 159 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 189 (222)
T PRK05869 159 RAKELVFSGRFFDAEEALALGLIDEMVAPDD 189 (222)
T ss_pred HHHHHHHcCCCcCHHHHHHCCCCCEeeCchH
Confidence 3344555567899999999999999997553
No 38
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=98.78 E-value=1.6e-07 Score=83.54 Aligned_cols=146 Identities=15% Similarity=0.175 Sum_probs=96.7
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEE----EeCCCCcHHH--------------HHHHHHHHHhcC
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMY----LNSPGGQVTA--------------GLAIYDTMQYIR 116 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~----INSPGG~V~a--------------g~aIyd~i~~~~ 116 (249)
+|.|+-| ++.++.+.+...+..++.++..+.|+|. .=|.|+++.. ...+++.|..++
T Consensus 17 ~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (259)
T PRK06688 17 TITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALP 96 (259)
T ss_pred EEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCC
Confidence 3566655 7788889999999988865545544443 1244444422 234566677889
Q ss_pred CCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHH
Q 025670 117 SPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVI 196 (249)
Q Consensus 117 ~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i 196 (249)
+||++.+.|.|..+|.-|+++|| .|++.++++|.+.....|......-.. . +.+..|. ...
T Consensus 97 kp~Iaav~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~G~~p~~g~~~-----------~----l~~~~G~--~~a 157 (259)
T PRK06688 97 KPVVAAVNGPAVGVGVSLALACD--LVYASESAKFSLPFAKLGLCPDAGGSA-----------L----LPRLIGR--ARA 157 (259)
T ss_pred CCEEEEECCeeecHHHHHHHhCC--EEEecCCCEecCchhhcCCCCCcchhh-----------H----HHHHhhH--HHH
Confidence 99999999999999999999999 799999999887554433211100000 0 1111121 222
Q ss_pred HhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 197 QKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 197 ~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
.+++-....++++||+++||||+|.+..
T Consensus 158 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~ 185 (259)
T PRK06688 158 AEMLLLGEPLSAEEALRIGLVNRVVPAA 185 (259)
T ss_pred HHHHHhCCccCHHHHHHcCCcceecCHH
Confidence 3334445679999999999999998754
No 39
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=98.77 E-value=2e-07 Score=83.13 Aligned_cols=146 Identities=12% Similarity=0.146 Sum_probs=97.6
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEE----eCCCCcHHHH------------------HHHHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYL----NSPGGQVTAG------------------LAIYDTM 112 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~I----NSPGG~V~ag------------------~aIyd~i 112 (249)
+|.|+.| ++.++...+.+.|..++.++..+-|+|.= =|.|+++... ..++..|
T Consensus 15 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (260)
T PRK07511 15 VLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAI 94 (260)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHH
Confidence 4667766 77788888988888887655444444321 1334544321 2345566
Q ss_pred HhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 025670 113 QYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQS 192 (249)
Q Consensus 113 ~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~ 192 (249)
..+++||++.+.|.|..+|..|+++|| .|++.++++|.+.....|.. .+..- ...+.+..|
T Consensus 95 ~~~~kpvIAav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~~~vg-- 155 (260)
T PRK07511 95 RAFPKPVIAAVEGAAAGAGFSLALACD--LLVAARDAKFVMAYVKVGLT---PDGGG------------SWFLARALP-- 155 (260)
T ss_pred HcCCCCEEEEECCeeehHHHHHHHhCC--EEEeeCCCEEeccccccCcC---CCchH------------HHHHHHHhC--
Confidence 778999999999999999999999999 79999999988754443321 11100 000112222
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 193 IEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 193 ~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
.....+++-....|+++||+++||||+|.+..
T Consensus 156 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 187 (260)
T PRK07511 156 RQLATELLLEGKPISAERLHALGVVNRLAEPG 187 (260)
T ss_pred HHHHHHHHHhCCCCCHHHHHHcCCccEeeCch
Confidence 34445555556789999999999999999754
No 40
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=98.77 E-value=2.2e-07 Score=83.69 Aligned_cols=147 Identities=20% Similarity=0.249 Sum_probs=96.4
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe----CCCCcHHHH-------------------HHHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN----SPGGQVTAG-------------------LAIYDT 111 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN----SPGG~V~ag-------------------~aIyd~ 111 (249)
+|.|+-| ++.++...+.+.+..++.++..+.|+|.=+ |-|+++... ..+++.
T Consensus 29 ~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (277)
T PRK08258 29 TITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKA 108 (277)
T ss_pred EEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHH
Confidence 3566654 677788888888888876544443333111 344554321 135566
Q ss_pred HHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCC
Q 025670 112 MQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQ 191 (249)
Q Consensus 112 i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~ 191 (249)
|..+++||++.+.|.|..+|.-|+++|| .|++.++++|.+.....|... .+... ...+.+..|.
T Consensus 109 l~~~~kPvIAaV~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~~Gl~p--~~~g~------------~~~l~~~vG~ 172 (277)
T PRK08258 109 MRACPQPIIAAVDGVCAGAGAILAMASD--LRLGTPSAKTAFLFTRVGLAG--ADMGA------------CALLPRIIGQ 172 (277)
T ss_pred HHhCCCCEEEEECCeeehHHHHHHHhCC--EEEecCCCEEeccccccCcCC--CCchH------------HHHHHHHhCH
Confidence 7788999999999999999999999999 799999999987665544321 11100 0001111222
Q ss_pred CHHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 192 SIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 192 ~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
....+++-....++++||+++||||+|+...
T Consensus 173 --~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 203 (277)
T PRK08258 173 --GRASELLYTGRSMSAEEGERWGFFNRLVEPE 203 (277)
T ss_pred --HHHHHHHHcCCCCCHHHHHHcCCCcEecCHH
Confidence 2234445456788999999999999998754
No 41
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=98.77 E-value=2e-07 Score=83.13 Aligned_cols=143 Identities=15% Similarity=0.209 Sum_probs=98.3
Q ss_pred EEEEcce----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe----CCCCcHHHH-----------------HHHHHHHHh
Q 025670 60 IICINGP----INDDTAHVVVAQLLFLESENPSKPIHMYLN----SPGGQVTAG-----------------LAIYDTMQY 114 (249)
Q Consensus 60 iI~L~g~----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN----SPGG~V~ag-----------------~aIyd~i~~ 114 (249)
+|.|+.| ++.++...+.+.+..++.++..+-|+|.=+ |.|+++... ..+++.|..
T Consensus 16 ~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (257)
T PRK06495 16 VVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRE 95 (257)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHh
Confidence 4677776 777788899999988876554443433211 233444321 124556777
Q ss_pred cCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHH
Q 025670 115 IRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIE 194 (249)
Q Consensus 115 ~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~ 194 (249)
+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|..|-.. . +.+..| ..
T Consensus 96 ~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~~~~~--------------~----l~~~~g--~~ 153 (257)
T PRK06495 96 CAKPVIAAVNGPALGAGLGLVASCD--IIVASENAVFGLPEIDVGLAGGGK--------------H----AMRLFG--HS 153 (257)
T ss_pred CCCCEEEEECCeeehhHHHHHHhCC--EEEecCCCEeeChhhccCccccHH--------------H----HHHHhC--HH
Confidence 8999999999999999999999999 799999999887554444322110 0 122223 34
Q ss_pred HHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 195 VIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 195 ~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
...+++-....++++||+++||||+|++..
T Consensus 154 ~a~~lll~g~~~~a~eA~~~GLv~~vv~~~ 183 (257)
T PRK06495 154 LTRRMMLTGYRVPAAELYRRGVIEACLPPE 183 (257)
T ss_pred HHHHHHHcCCeeCHHHHHHcCCcceecCHH
Confidence 445555567789999999999999998754
No 42
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=98.75 E-value=2.5e-07 Score=82.64 Aligned_cols=147 Identities=18% Similarity=0.179 Sum_probs=95.8
Q ss_pred EEEEcce----eCcchHHHHHHHHHHhhhcCCCCCeEEE-----EeCCCCcHHH--------------HHHHHHHHHhcC
Q 025670 60 IICINGP----INDDTAHVVVAQLLFLESENPSKPIHMY-----LNSPGGQVTA--------------GLAIYDTMQYIR 116 (249)
Q Consensus 60 iI~L~g~----Id~~~a~~i~a~L~~l~~~~~~~~I~l~-----INSPGG~V~a--------------g~aIyd~i~~~~ 116 (249)
+|.|+.| ++.++...+...+..++.++..+.|+|. .=|.|+++.. ...++..|..++
T Consensus 15 ~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (261)
T PRK03580 15 EITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLD 94 (261)
T ss_pred EEEECCccccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCC
Confidence 4666666 6667788888888888765544444442 1144555432 123355677889
Q ss_pred CCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHH
Q 025670 117 SPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVI 196 (249)
Q Consensus 117 ~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i 196 (249)
+||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|. ..+.... . . +.+..| ....
T Consensus 95 kPvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~G~---~p~~g~~----~----~----l~~~vg--~~~a 155 (261)
T PRK03580 95 KPVIAAVNGYAFGGGFELALAAD--FIVCADNASFALPEAKLGI---VPDSGGV----L----R----LPKRLP--PAIA 155 (261)
T ss_pred CCEEEEECCeeehHHHHHHHHCC--EEEecCCCEEeCcccccCc---CCCccHH----H----H----HHHHhC--HHHH
Confidence 99999999999999999999999 7999999988653322221 1111100 0 0 111122 2334
Q ss_pred HhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 197 QKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 197 ~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
.+++-....++++||+++||||+|++..+
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 184 (261)
T PRK03580 156 NEMVMTGRRMDAEEALRWGIVNRVVPQAE 184 (261)
T ss_pred HHHHHhCCccCHHHHHHcCCCcEecCHhH
Confidence 44444567899999999999999987543
No 43
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=98.70 E-value=2.2e-07 Score=81.77 Aligned_cols=145 Identities=18% Similarity=0.166 Sum_probs=98.0
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCC------CcH---------------HHHHHHHHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLNSPG------GQV---------------TAGLAIYDTMQ 113 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPG------G~V---------------~ag~aIyd~i~ 113 (249)
+|.|+.| ++.++...+...|..++.++..+ .+.|.+.| +++ .....++..|.
T Consensus 10 ~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~--vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~ 87 (245)
T PF00378_consen 10 TITLNRPEKRNALNPEMLDELEEALDEAEADPDVK--VVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLA 87 (245)
T ss_dssp EEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTES--EEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCcc--EEEEeecccccccccchhhhhccccccccccchhhccccccch
Confidence 3555555 67788899999999998876555 44445444 333 23455667788
Q ss_pred hcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCH
Q 025670 114 YIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSI 193 (249)
Q Consensus 114 ~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~ 193 (249)
.+++||++.+.|.|..+|.-+++++| .|++.+++.|.+-....|.....--.. .+.+..|.
T Consensus 88 ~~~kp~Iaav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~~~G~~p~~g~~~---------------~l~r~~g~-- 148 (245)
T PF00378_consen 88 NFPKPTIAAVNGHAVGGGFELALACD--FRIAAEDAKFGFPEVRLGIFPGAGGTF---------------RLPRLIGP-- 148 (245)
T ss_dssp HSSSEEEEEESSEEETHHHHHHHHSS--EEEEETTTEEETGGGGGTSSSTSTHHH---------------HHHHHHHH--
T ss_pred hhhhheeecccccccccccccccccc--eEEeecccceeeeecccCccccccccc---------------ccceeeec--
Confidence 88999999999999999999999999 899999999766444333211111110 11112221
Q ss_pred HHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 194 EVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 194 ~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
....+++-....++|+||+++||||+|+...+
T Consensus 149 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~ 180 (245)
T PF00378_consen 149 SRARELLLTGEPISAEEALELGLVDEVVPDEE 180 (245)
T ss_dssp HHHHHHHHHTCEEEHHHHHHTTSSSEEESGGG
T ss_pred ccccccccccccchhHHHHhhcceeEEcCchh
Confidence 22233433456789999999999999998765
No 44
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=98.70 E-value=3.2e-07 Score=82.05 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=94.9
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe------CCCCcHHHH--------------HHHHHHHHh
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN------SPGGQVTAG--------------LAIYDTMQY 114 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN------SPGG~V~ag--------------~aIyd~i~~ 114 (249)
+|.|+-| ++.++...+...+..++.++ .+.|+|.=+ |.|+++... ..++..|..
T Consensus 16 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~ 94 (261)
T PRK11423 16 TITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQK 94 (261)
T ss_pred EEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHh
Confidence 4666655 67778888888888877543 444443311 334444321 234566778
Q ss_pred cCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHH
Q 025670 115 IRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIE 194 (249)
Q Consensus 115 ~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~ 194 (249)
+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|.. ....- . ..+.+..| ..
T Consensus 95 ~~kPvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~---~~~g~----~--------~~l~~~vg--~~ 155 (261)
T PRK11423 95 FPKPVIAMVEGSVWGGAFELIMSCD--LIIAASTSTFAMTPANLGVP---YNLSG----I--------LNFTNDAG--FH 155 (261)
T ss_pred CCCCEEEEEecEEechHHHHHHhCC--EEEecCCCEecCchhhcCCC---CCccH----H--------HHHHHHhH--HH
Confidence 8999999999999999999999999 79999999887544332221 11100 0 01122222 23
Q ss_pred HHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 195 VIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 195 ~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
...+++-....++++||+++||||+|.+..
T Consensus 156 ~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~ 185 (261)
T PRK11423 156 IVKEMFFTASPITAQRALAVGILNHVVEVE 185 (261)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCcCcccCHH
Confidence 344455456789999999999999998754
No 45
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.70 E-value=5.7e-07 Score=80.42 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=98.4
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEE----eCCCCcHHH-------------HHHHHHHHHhcCC
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYL----NSPGGQVTA-------------GLAIYDTMQYIRS 117 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~I----NSPGG~V~a-------------g~aIyd~i~~~~~ 117 (249)
+|.|+-| ++.++.+.+...|..++.++..+.|+|.= =|.|+++.. ...+++.|..+++
T Consensus 16 ~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~k 95 (258)
T PRK06190 16 TLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRK 95 (258)
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCC
Confidence 4566654 77888889999998888655454444421 145566542 1245667888899
Q ss_pred CEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHH
Q 025670 118 PINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQ 197 (249)
Q Consensus 118 pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~ 197 (249)
||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|. ..+..- ...+.+..| .....
T Consensus 96 PvIAaV~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl---~p~~g~------------~~~l~r~vG--~~~a~ 156 (258)
T PRK06190 96 PVIGAINGAAVTGGLELALACD--ILIASERARFADTHARVGI---LPGWGL------------SVRLPQKVG--IGRAR 156 (258)
T ss_pred CEEEEECCEeecHHHHHHHhCC--EEEEeCCCEEECcccccCc---CCCccH------------HHHHHHHhC--HHHHH
Confidence 9999999999999999999999 7999999998753322221 111110 011122223 34444
Q ss_pred hhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 198 KNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 198 ~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
+++-....++|+||+++||||++....
T Consensus 157 ~l~ltg~~~~a~eA~~~GLv~~vv~~~ 183 (258)
T PRK06190 157 RMSLTGDFLDAADALRAGLVTEVVPHD 183 (258)
T ss_pred HHHHhCCccCHHHHHHcCCCeEecCHh
Confidence 555556788999999999999998754
No 46
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=98.69 E-value=4.7e-07 Score=84.47 Aligned_cols=161 Identities=13% Similarity=0.086 Sum_probs=104.3
Q ss_pred cCCCCcccchhhhhccCcEEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe-----CCCCcHHH-------
Q 025670 42 SSRGERAYDIFSRLLKERIICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN-----SPGGQVTA------- 104 (249)
Q Consensus 42 ~~~g~~~~di~~~l~~~riI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN-----SPGG~V~a------- 104 (249)
.+.|+...++|.. +|.|+-| ++.++...+...+..++.++..+-|+|.=. |-|+++.+
T Consensus 27 ~~~~~~~~~~~~A-----~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~ 101 (360)
T TIGR03200 27 RPDGNVVPGLYNA-----WIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAG 101 (360)
T ss_pred CCCCCccCceEEE-----EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhccc
Confidence 4566667777765 3566765 778888899999988886544433333211 22344322
Q ss_pred -----------HHHHHHHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHH
Q 025670 105 -----------GLAIYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQ 173 (249)
Q Consensus 105 -----------g~aIyd~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~ 173 (249)
...+++.|..+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-.+..|.. .+..-
T Consensus 102 ~~~~~~~~~~~~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCD--lrIAse~A~Fg~PE~rlGl~---P~~Gg---- 172 (360)
T TIGR03200 102 NPQEYRQYMRLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAAD--FTIAQDLANFGQAGPKHGSA---PIGGA---- 172 (360)
T ss_pred ChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCC--EEEEcCCCEEeCchhccCCC---CCccH----
Confidence 12345567778999999999999999999999999 79999999988754443321 11100
Q ss_pred HHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCcc
Q 025670 174 IVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRPM 226 (249)
Q Consensus 174 l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~~ 226 (249)
...+....|. .....++-....|+|+||+++||||+|.+..+.
T Consensus 173 --------t~rLprlvG~--~rA~~llltGe~~sA~EA~~~GLVd~VVp~~~~ 215 (360)
T TIGR03200 173 --------TDFLPLMIGC--EQAMVSGTLCEPWSAHKAKRLGIIMDVVPALKV 215 (360)
T ss_pred --------HHHHHHhhCH--HHHHHHHHhCCcCcHHHHHHcCChheecCchhc
Confidence 0001111222 222333333568899999999999999886653
No 47
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=98.69 E-value=4.6e-07 Score=80.82 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=97.6
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEE-----eCCCCcHHH---------------HHHHHHHHHh
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYL-----NSPGGQVTA---------------GLAIYDTMQY 114 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~I-----NSPGG~V~a---------------g~aIyd~i~~ 114 (249)
+|.|+-| ++.++...+...+..++.++..+.|+|.= =|.|+++.. ...+++.|..
T Consensus 19 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 98 (256)
T PRK06143 19 TLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRH 98 (256)
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHh
Confidence 4666654 77788889999998888655444444422 133444432 1234566777
Q ss_pred cCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHH
Q 025670 115 IRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIE 194 (249)
Q Consensus 115 ~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~ 194 (249)
+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|. +.... ...+.+..|. .
T Consensus 99 ~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~G~---p~~~~-------------~~~l~~~iG~--~ 158 (256)
T PRK06143 99 FPVPVIARIPGWCLGGGLELAAACD--LRIAAHDAQFGMPEVRVGI---PSVIH-------------AALLPRLIGW--A 158 (256)
T ss_pred CCCCEEEEECCEEeehhHHHHHhCC--EEEecCCCEEeCCccccCC---CCccH-------------HHHHHHhcCH--H
Confidence 8999999999999999999999999 7999999988763333332 11110 0112333333 3
Q ss_pred HHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 195 VIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 195 ~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
...+++-....++|+||+++||||+|++..
T Consensus 159 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 188 (256)
T PRK06143 159 RTRWLLLTGETIDAAQALAWGLVDRVVPLA 188 (256)
T ss_pred HHHHHHHcCCcCCHHHHHHCCCcCeecCHH
Confidence 445555567789999999999999999754
No 48
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=98.68 E-value=6.9e-07 Score=79.65 Aligned_cols=147 Identities=14% Similarity=0.123 Sum_probs=94.1
Q ss_pred EEEEcce----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe-----CCCCcHHH---------------HHHHHHHHHhc
Q 025670 60 IICINGP----INDDTAHVVVAQLLFLESENPSKPIHMYLN-----SPGGQVTA---------------GLAIYDTMQYI 115 (249)
Q Consensus 60 iI~L~g~----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN-----SPGG~V~a---------------g~aIyd~i~~~ 115 (249)
+|.|+-| ++.++...+...+..++.++..+-|+|.=. |.|+++.. ...++..|..+
T Consensus 15 ~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (258)
T PRK09076 15 ILTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAF 94 (258)
T ss_pred EEEECCCCcCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhC
Confidence 3555554 677788888888888876554443333221 22444432 12245567778
Q ss_pred CCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHH
Q 025670 116 RSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEV 195 (249)
Q Consensus 116 ~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~ 195 (249)
++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|.. .+..- ...+.+..|. ..
T Consensus 95 ~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~~~iG~--~~ 155 (258)
T PRK09076 95 RGVSIAAINGYAMGGGLECALACD--IRIAEEQAQMALPEASVGLL---PCAGG------------TQNLPWLVGE--GW 155 (258)
T ss_pred CCCEEEEECCEEecHHHHHHHhCC--EEEecCCCEeeCcccccCCC---CCccH------------HHHHHHHhCH--HH
Confidence 999999999999999999999999 79999999987644332221 11100 0011222232 22
Q ss_pred HHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 196 IQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 196 i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
..+++-....++++||+++||||+|+...+
T Consensus 156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 185 (258)
T PRK09076 156 AKRMILCGERVDAATALRIGLVEEVVEKGE 185 (258)
T ss_pred HHHHHHcCCcCCHHHHHHCCCCceecCchh
Confidence 333444466789999999999999997653
No 49
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=98.66 E-value=5.4e-07 Score=80.58 Aligned_cols=147 Identities=16% Similarity=0.177 Sum_probs=94.8
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCC-CCCeEEEEe----CCCCcHHH--------------H-------HHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENP-SKPIHMYLN----SPGGQVTA--------------G-------LAI 108 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~-~~~I~l~IN----SPGG~V~a--------------g-------~aI 108 (249)
+|.|+.+ ++.++...+...+..++.+++ .+.|+|.=. |.|+++.. + ..+
T Consensus 16 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (266)
T PRK05981 16 ILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPF 95 (266)
T ss_pred EEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHH
Confidence 3555544 677788888888888775432 333333311 33444432 1 124
Q ss_pred HHHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 025670 109 YDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKH 188 (249)
Q Consensus 109 yd~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~ 188 (249)
+..|..+++||++.+.|.|..+|.-|+++|| .|++.+++.|.+..+..|.. .+..- - ..+.+.
T Consensus 96 ~~~l~~~~kpvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~~e~~lG~~---p~~g~--~----------~~l~~~ 158 (266)
T PRK05981 96 LRRLRNLPCPIVTAVNGPAAGVGMSFALMGD--LILCARSAYFLQAFRRIGLV---PDGGS--T----------WLLPRL 158 (266)
T ss_pred HHHHHhCCCCEEEEECCEeehHHHHHHHhCC--EEEecCCCEEechHhhcCCC---CCccH--H----------HHHHHH
Confidence 5567788999999999999999999999999 79999999988655543321 11100 0 001111
Q ss_pred hCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 189 TGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 189 tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
.| .....+++-....|+++||+++||||+|++..+
T Consensus 159 vg--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 193 (266)
T PRK05981 159 VG--KARAMELSLLGEKLPAETALQWGLVNRVVDDAE 193 (266)
T ss_pred hH--HHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhH
Confidence 12 223344444567789999999999999997653
No 50
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=98.66 E-value=4.6e-07 Score=81.28 Aligned_cols=144 Identities=16% Similarity=0.151 Sum_probs=95.8
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCC------CcHHHH-----------------------
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLNSPG------GQVTAG----------------------- 105 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPG------G~V~ag----------------------- 105 (249)
+|.|+.| ++.++...+.+.|..++.++..+.|+| .+.| +++...
T Consensus 18 ~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl--~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (272)
T PRK06210 18 VITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVL--TGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRP 95 (272)
T ss_pred EEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEE--ECCCCCcccccCHHHHhccCcccccccccchhhhhhhhh
Confidence 3566665 777888888888888876544443333 3333 444321
Q ss_pred --HHHHHHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 025670 106 --LAIYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNA 183 (249)
Q Consensus 106 --~aIyd~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~ 183 (249)
..+++.|..+++||++.+.|.|..+|.-|+++|| .|++.++++|.+..+..|.. .+..... .
T Consensus 96 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~~~Gl~---p~~g~~~--------~--- 159 (272)
T PRK06210 96 DYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCD--VRFAADGAKFTTAFARRGLI---AEHGISW--------I--- 159 (272)
T ss_pred hHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCC--EEEEeCCCEEechHHhcCCC---CCCchhh--------h---
Confidence 1124567778999999999999999999999999 79999999998765543321 1100000 0
Q ss_pred HHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 184 LYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 184 ~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
+.+.. ......+++-....++|+||+++||||+|....
T Consensus 160 -l~~~i--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 197 (272)
T PRK06210 160 -LPRLV--GHANALDLLLSARTFYAEEALRLGLVNRVVPPD 197 (272)
T ss_pred -hHhhh--CHHHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence 11111 234455555557778999999999999998754
No 51
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=98.66 E-value=7.7e-07 Score=79.21 Aligned_cols=146 Identities=14% Similarity=0.154 Sum_probs=97.3
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEE----eCCCCcHHH-------------HHHHHHHHHhcCC
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYL----NSPGGQVTA-------------GLAIYDTMQYIRS 117 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~I----NSPGG~V~a-------------g~aIyd~i~~~~~ 117 (249)
+|.|+-| ++.++.+.+.+.+..++.++..+.|+|.= =|.|+++.. ...+++.|..+++
T Consensus 14 ~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~k 93 (255)
T PRK09674 14 LLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNK 93 (255)
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCC
Confidence 4566554 67778888888888887655444444421 144455432 1234566778899
Q ss_pred CEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHH
Q 025670 118 PINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQ 197 (249)
Q Consensus 118 pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~ 197 (249)
||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|.. .+..- ...+.+..| .....
T Consensus 94 PvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~~~ig--~~~a~ 154 (255)
T PRK09674 94 PLIAAVNGYALGAGCELALLCD--IVIAGENARFGLPEITLGIM---PGAGG------------TQRLIRSVG--KSLAS 154 (255)
T ss_pred CEEEEECCEeehHHHHHHHhCC--EEEecCCCEEeCchhhcCCC---CCccH------------HHHHHHHhC--HHHHH
Confidence 9999999999999999999999 79999999987654443321 11100 011222333 23334
Q ss_pred hhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 198 KNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 198 ~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
+++-....|+++||+++||||+|+...
T Consensus 155 ~l~l~g~~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK09674 155 QMVLTGESITAQQAQQAGLVSEVFPPE 181 (255)
T ss_pred HHHHcCCccCHHHHHHcCCCcEecChH
Confidence 555556779999999999999998764
No 52
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=98.65 E-value=7.3e-07 Score=79.25 Aligned_cols=145 Identities=17% Similarity=0.206 Sum_probs=94.7
Q ss_pred EEEcce----eCcchHHHHHHHHHHhhhcCCCCCeEEEE----eCCCCcHHH----------------HHHHHHHHHhcC
Q 025670 61 ICINGP----INDDTAHVVVAQLLFLESENPSKPIHMYL----NSPGGQVTA----------------GLAIYDTMQYIR 116 (249)
Q Consensus 61 I~L~g~----Id~~~a~~i~a~L~~l~~~~~~~~I~l~I----NSPGG~V~a----------------g~aIyd~i~~~~ 116 (249)
|.|+.+ ++.++...+.+.+..++.++..+.|+|.= =|.|+++.. ...++..|..++
T Consensus 15 itl~rp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (257)
T PRK07658 15 ITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFS 94 (257)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCC
Confidence 455544 66778888888888887655444444421 134555432 123456677889
Q ss_pred CCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHH
Q 025670 117 SPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVI 196 (249)
Q Consensus 117 ~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i 196 (249)
+||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|.. .+..-. ..+.+..|. ...
T Consensus 95 kpvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~vG~--~~a 155 (257)
T PRK07658 95 KPVIAAIHGAALGGGLELAMSCH--IRFATESAKLGLPELNLGLI---PGFAGT------------QRLPRYVGK--AKA 155 (257)
T ss_pred CCEEEEEcCeeeeHHHHHHHhCC--EEEecCCCcccCcccccCCC---CCCcHH------------HHHHHHhCH--HHH
Confidence 99999999999999999999999 79999999887643332221 111000 001122232 233
Q ss_pred HhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 197 QKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 197 ~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
.+++-....++++||+++||||+|++..
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 183 (257)
T PRK07658 156 LEMMLTSEPITGAEALKWGLVNGVFPEE 183 (257)
T ss_pred HHHHHcCCCcCHHHHHHcCCcCeecChh
Confidence 4455556789999999999999998754
No 53
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=98.63 E-value=6e-07 Score=79.99 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=95.0
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe-----CCCCcHHHH-------------------HHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN-----SPGGQVTAG-------------------LAIYD 110 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN-----SPGG~V~ag-------------------~aIyd 110 (249)
+|.|+-| ++.++...+...+..++.++..+.|+|.=+ |-|+++... ..+++
T Consensus 15 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (260)
T PRK05980 15 LLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTA 94 (260)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 4566654 677788888888888886554444444221 223444210 12445
Q ss_pred HHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhC
Q 025670 111 TMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTG 190 (249)
Q Consensus 111 ~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg 190 (249)
.|..+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|. ..+... ...+.+..|
T Consensus 95 ~l~~~~kPvIaav~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~Gl---~p~~g~------------~~~l~~~vG 157 (260)
T PRK05980 95 RLEAFPKPVIAAVNGLAFGGGCEITEAVH--LAIASERALFAKPEIRLGM---PPTFGG------------TQRLPRLAG 157 (260)
T ss_pred HHHhCCCCEEEEEcCEEEhhhhHHhHhCC--EEEecCCCEecCcccccCC---CCCchH------------hhHHHhhcC
Confidence 56778999999999999999999999999 7999999988763332221 111100 001122223
Q ss_pred CCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 191 QSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 191 ~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
.....+++-....++++||+++||||+|+...+
T Consensus 158 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 190 (260)
T PRK05980 158 --RKRALELLLTGDAFSAERALEIGLVNAVVPHEE 190 (260)
T ss_pred --HHHHHHHHHcCCccCHHHHHHcCCCCcccCHHH
Confidence 233345555567899999999999999987543
No 54
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=98.63 E-value=8.1e-07 Score=79.19 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=95.5
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEE----EeCCCCcHHHH----------------------HHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMY----LNSPGGQVTAG----------------------LAI 108 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~----INSPGG~V~ag----------------------~aI 108 (249)
+|.|+.| ++.++.+.+...+..++.++..+.|+|. .=|.|+++... ..+
T Consensus 15 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (262)
T PRK07509 15 DVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRV 94 (262)
T ss_pred EEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHH
Confidence 4666655 6777888999999888865544444431 01344544321 112
Q ss_pred HHHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 025670 109 YDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKH 188 (249)
Q Consensus 109 yd~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~ 188 (249)
+..|+.+++||++.+.|.|..+|.-|+++|| .|++.+++.|.+.....|.. .+..- ...+.+.
T Consensus 95 ~~~~~~~~kpvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~~~ 157 (262)
T PRK07509 95 SLGWRRLPVPVIAALEGVCFGGGLQIALGAD--IRIAAPDTKLSIMEAKWGLV---PDMAG------------TVSLRGL 157 (262)
T ss_pred HHHHHhCCCCEEEEECCeeecchHHHHHhCC--EEEecCCCEeecchhccCCC---CCchH------------HHHHHHH
Confidence 3445678999999999999999999999999 79999999988755443321 11100 0011222
Q ss_pred hCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 025670 189 TGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQ 223 (249)
Q Consensus 189 tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~ 223 (249)
.| .....+++-....|+++||+++||||+|++.
T Consensus 158 ~g--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 190 (262)
T PRK07509 158 VR--KDVARELTYTARVFSAEEALELGLVTHVSDD 190 (262)
T ss_pred hC--HHHHHHHHHcCCCcCHHHHHHcCChhhhhch
Confidence 23 2334455555678999999999999999853
No 55
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=98.62 E-value=1.4e-06 Score=77.75 Aligned_cols=144 Identities=16% Similarity=0.173 Sum_probs=92.0
Q ss_pred EEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe----CCCCcHHH---------------HHHHHHHHHhcC
Q 025670 61 ICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN----SPGGQVTA---------------GLAIYDTMQYIR 116 (249)
Q Consensus 61 I~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN----SPGG~V~a---------------g~aIyd~i~~~~ 116 (249)
|.|+-+ ++.++...+...+..++ +..+.|+|.=+ |.|+++.. ...+++.|..++
T Consensus 15 itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 92 (255)
T PRK08150 15 IGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGR 92 (255)
T ss_pred EEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCC
Confidence 555544 66777888888888776 33443433311 33455432 123455677789
Q ss_pred CCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHH
Q 025670 117 SPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVI 196 (249)
Q Consensus 117 ~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i 196 (249)
+||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|. ....... ..+.+..|. ...
T Consensus 93 kPvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl---~p~~g~~------------~~l~~~iG~--~~a 153 (255)
T PRK08150 93 VPVIAALHGAVVGGGLELASAAH--IRVADESTYFALPEGQRGI---FVGGGGS------------VRVPRLIGV--ARM 153 (255)
T ss_pred CCEEEEECCEEEcHHHHHHHhCC--EEEEeCCCEEeccccccCC---CCCccHH------------HHHHHHhCH--HHH
Confidence 99999999999999999999999 7999999988763333221 1111000 001122232 233
Q ss_pred HhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 197 QKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 197 ~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
.+++-....|+++||+++||||+|+...+
T Consensus 154 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 182 (255)
T PRK08150 154 TDMMLTGRVYDAQEGERLGLAQYLVPAGE 182 (255)
T ss_pred HHHHHcCCcCCHHHHHHcCCccEeeCchH
Confidence 44444567789999999999999998653
No 56
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=98.61 E-value=1.3e-06 Score=77.94 Aligned_cols=147 Identities=13% Similarity=0.151 Sum_probs=95.1
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEE----eCCCCcHHH-------------HHHHHHHHHhcCC
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYL----NSPGGQVTA-------------GLAIYDTMQYIRS 117 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~I----NSPGG~V~a-------------g~aIyd~i~~~~~ 117 (249)
+|.|+-| ++.++...+.+.+..++.++..+.|+|.= =|.|+++.. ...+++.|..+++
T Consensus 20 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~k 99 (261)
T PRK08138 20 LLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPK 99 (261)
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCC
Confidence 4566544 67778888888888887655444444421 133445432 1234556777899
Q ss_pred CEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHH
Q 025670 118 PINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQ 197 (249)
Q Consensus 118 pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~ 197 (249)
||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|. ..+..- ...+.+..|. ....
T Consensus 100 PvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl---~p~~g~------------~~~l~~~vG~--~~a~ 160 (261)
T PRK08138 100 PVIAAVNGYALGGGCELAMHAD--IIVAGESASFGQPEIKVGL---MPGAGG------------TQRLVRAVGK--FKAM 160 (261)
T ss_pred CEEEEEccEEEcHHHHHHHhCC--EEEecCCCEeeCccccccc---CCCCcH------------HHHHHHHhCH--HHHH
Confidence 9999999999999999999999 7999999988763333221 111100 0012222332 3334
Q ss_pred hhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 198 KNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 198 ~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
+++-....|+++||+++||||+|+...+
T Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 188 (261)
T PRK08138 161 RMALTGCMVPAPEALAIGLVSEVVEDEQ 188 (261)
T ss_pred HHHHcCCCCCHHHHHHCCCCcEecCchH
Confidence 4444566789999999999999987643
No 57
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=98.61 E-value=8.1e-07 Score=80.83 Aligned_cols=146 Identities=13% Similarity=0.141 Sum_probs=95.3
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe----CCCCcHHHH-------------------------
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN----SPGGQVTAG------------------------- 105 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN----SPGG~V~ag------------------------- 105 (249)
+|.|+.| ++.++...+...|..++.++..+.|+|.=+ |.|+++...
T Consensus 16 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (296)
T PRK08260 16 TITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSD 95 (296)
T ss_pred EEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccchhH
Confidence 3566654 677788888888888876554443333211 334444321
Q ss_pred -------HHHHHHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHH
Q 025670 106 -------LAIYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVW 178 (249)
Q Consensus 106 -------~aIyd~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~ 178 (249)
..++..|..+++||++.+.|.|..+|.-|+++|| .|++.++++|.+.....|.. .+..- .
T Consensus 96 ~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~~Gl~---p~~g~--~------ 162 (296)
T PRK08260 96 DGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMD--IRLASTAARFGFVFGRRGIV---PEAAS--S------ 162 (296)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCC--EEEeeCCCEEecchhhcCcC---CCcch--h------
Confidence 1245567778999999999999999999999999 79999999998755443321 11100 0
Q ss_pred HHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 179 DALNALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 179 ~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
..+.+..| .....+++-....++++||+++||||+|++..
T Consensus 163 ----~~l~r~vG--~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~ 202 (296)
T PRK08260 163 ----WFLPRLVG--LQTALEWVYSGRVFDAQEALDGGLVRSVHPPD 202 (296)
T ss_pred ----hhHHHhhC--HHHHHHHHHcCCccCHHHHHHCCCceeecCHH
Confidence 00111122 23334555556679999999999999998754
No 58
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=98.61 E-value=9.4e-07 Score=78.75 Aligned_cols=144 Identities=17% Similarity=0.256 Sum_probs=94.6
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCC-------CcHHH---------------HHHHHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLNSPG-------GQVTA---------------GLAIYDTM 112 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPG-------G~V~a---------------g~aIyd~i 112 (249)
+|.|+-| ++.++...+.+.+..++.++..+- |.|.+.| +++.. ...++..|
T Consensus 16 ~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~--vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l 93 (260)
T PRK05809 16 VVTINRPKALNALNSETLKELDTVLDDIENDDNVYA--VILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKL 93 (260)
T ss_pred EEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEE--EEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHH
Confidence 4566654 667778888888887776544433 3344544 33321 12355667
Q ss_pred HhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 025670 113 QYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQS 192 (249)
Q Consensus 113 ~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~ 192 (249)
..+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|.. .+..- ...+.+..|.
T Consensus 94 ~~~~kPvIaav~G~a~GgG~~lal~cD--~~va~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~~~vG~- 155 (260)
T PRK05809 94 ENLDKPVIAAINGFALGGGCELSMACD--IRIASEKAKFGQPEVGLGIT---PGFGG------------TQRLARIVGP- 155 (260)
T ss_pred HcCCCCEEEEEcCeeecHHHHHHHhCC--EEEeeCCCEEeCcccccCCC---CCccH------------HHHHHHHhCH-
Confidence 788999999999999999999999999 79999999987644433321 11110 0011222232
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 193 IEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 193 ~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
....+++-....++++||+++||||+|....
T Consensus 156 -~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 186 (260)
T PRK05809 156 -GKAKELIYTGDMINAEEALRIGLVNKVVEPE 186 (260)
T ss_pred -HHHHHHHHhCCCCCHHHHHHcCCCCcccChH
Confidence 2334444455678999999999999998754
No 59
>PLN02600 enoyl-CoA hydratase
Probab=98.60 E-value=1.4e-06 Score=77.34 Aligned_cols=140 Identities=9% Similarity=0.100 Sum_probs=91.0
Q ss_pred eCcchHHHHHHHHHHhhhcCCCCCeEEEEe-----CCCCcHHHH---------------HHHHHHHHhcCCCEEEEEccc
Q 025670 67 INDDTAHVVVAQLLFLESENPSKPIHMYLN-----SPGGQVTAG---------------LAIYDTMQYIRSPINTICLGQ 126 (249)
Q Consensus 67 Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN-----SPGG~V~ag---------------~aIyd~i~~~~~pV~tv~~G~ 126 (249)
++.++.+.+.+.+..++.++..+-|+|.=. |.|+++... ..++..|..+++||++.+.|.
T Consensus 19 l~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 98 (251)
T PLN02600 19 IGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGA 98 (251)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEecCe
Confidence 677788888888888876554444444211 334554321 123455667899999999999
Q ss_pred cchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCccc
Q 025670 127 AASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFM 206 (249)
Q Consensus 127 AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~l 206 (249)
|..+|.-|+++|| .|++.++++|.+-....|. ..+..- ...+.+..| .....+++-....|
T Consensus 99 a~GgG~~lala~D--~~ia~~~a~f~~pe~~~Gl---~p~~g~------------~~~l~~~~G--~~~a~~l~ltg~~~ 159 (251)
T PLN02600 99 ALGGGLELALSCD--LRICGEEAVFGLPETGLAI---IPGAGG------------TQRLPRLVG--RSRAKELIFTGRRI 159 (251)
T ss_pred ecchhHHHHHhCC--EEEeeCCCEEeCcccccCc---CCCchH------------HHHHHHHhC--HHHHHHHHHhCCcc
Confidence 9999999999999 7999999998763322221 111100 000122222 22334444456678
Q ss_pred CHHHHHHcCCcceecCCCc
Q 025670 207 TPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 207 sa~EA~e~GlID~I~~~~~ 225 (249)
+++||+++||||+|+...+
T Consensus 160 ~a~eA~~~Glv~~vv~~~~ 178 (251)
T PLN02600 160 GAREAASMGLVNYCVPAGE 178 (251)
T ss_pred CHHHHHHcCCCcEeeChhH
Confidence 9999999999999987643
No 60
>PLN02921 naphthoate synthase
Probab=98.60 E-value=1.2e-06 Score=80.98 Aligned_cols=146 Identities=17% Similarity=0.168 Sum_probs=97.3
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe-----CCCCcHHHH----------------HHHHHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN-----SPGGQVTAG----------------LAIYDTMQ 113 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN-----SPGG~V~ag----------------~aIyd~i~ 113 (249)
+|.|+-| ++.++...+...+..++.++..+-|+|.=+ |.||++... ..++..|+
T Consensus 79 ~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~ 158 (327)
T PLN02921 79 KITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIR 158 (327)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHH
Confidence 4566655 677788889889888876554433333211 344554321 12345677
Q ss_pred hcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCH
Q 025670 114 YIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSI 193 (249)
Q Consensus 114 ~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~ 193 (249)
.+++||++.+.|.|..+|..|+++|| .|++.+++.|.+..+..|... ...- . ..+.+..| .
T Consensus 159 ~~~kPvIAaVnG~a~GGG~~LalacD--~riA~~~A~f~~pe~~~Gl~p---~~gg----~--------~~L~rliG--~ 219 (327)
T PLN02921 159 RLPKPVIAMVAGYAVGGGHILHMVCD--LTIAADNAVFGQTGPKVGSFD---AGYG----S--------SIMARLVG--Q 219 (327)
T ss_pred hCCCCEEEEECCEEecHHHHHHHhCC--EEEEeCCCEEeCcccccCCCC---CccH----H--------HHHHHHhC--H
Confidence 78999999999999999999999999 799999999988666544221 0000 0 00112222 2
Q ss_pred HHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 194 EVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 194 ~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
....+++-....|+|+||+++||||+|....
T Consensus 220 ~~A~ellltG~~~~A~eA~~~GLV~~vv~~~ 250 (327)
T PLN02921 220 KKAREMWFLARFYTASEALKMGLVNTVVPLD 250 (327)
T ss_pred HHHHHHHHcCCcCCHHHHHHCCCceEEeCHH
Confidence 3344555556789999999999999999754
No 61
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.59 E-value=7.9e-07 Score=78.93 Aligned_cols=146 Identities=14% Similarity=0.117 Sum_probs=98.4
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe----CCCCcHHHH------------HHHHHHHHhcCCC
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN----SPGGQVTAG------------LAIYDTMQYIRSP 118 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN----SPGG~V~ag------------~aIyd~i~~~~~p 118 (249)
+|.|+.| ++.++.+.+.+.+..++.++..+.|+|.=+ |.|+++... ..++..+..+++|
T Consensus 17 ~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kP 96 (249)
T PRK07110 17 QVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIP 96 (249)
T ss_pred EEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCC
Confidence 4566654 677788888888888876554444444311 344554321 2466678888999
Q ss_pred EEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHh
Q 025670 119 INTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQK 198 (249)
Q Consensus 119 V~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~ 198 (249)
|++.+.|.|..+|..|+++|| .|++.+++.|.+.....|.. .+..- ...+.+..| .....+
T Consensus 97 vIaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~~~~g--~~~a~~ 157 (249)
T PRK07110 97 VIAAMQGHAIGGGLVLGLYAD--IVVLSRESVYTANFMKYGFT---PGMGA------------TAILPEKLG--LALGQE 157 (249)
T ss_pred EEEEecCceechHHHHHHhCC--EEEEeCCCEecCchhccCCC---CCchH------------HHHHHHHhC--HHHHHH
Confidence 999999999999999999999 79999999886543332211 11110 001122223 344556
Q ss_pred hhcCCcccCHHHHHHcCCcceecCCC
Q 025670 199 NMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 199 ~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
++-....|+++||+++||||+|.+..
T Consensus 158 llltg~~~~a~eA~~~Glv~~vv~~~ 183 (249)
T PRK07110 158 MLLTARYYRGAELKKRGVPFPVLPRA 183 (249)
T ss_pred HHHcCCccCHHHHHHcCCCeEEeChH
Confidence 66667888999999999999999754
No 62
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=98.59 E-value=1.7e-06 Score=77.05 Aligned_cols=145 Identities=15% Similarity=0.124 Sum_probs=96.6
Q ss_pred EEEEcce----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe----CCCCcHHHH------------HHHHHHHHhcCCCE
Q 025670 60 IICINGP----INDDTAHVVVAQLLFLESENPSKPIHMYLN----SPGGQVTAG------------LAIYDTMQYIRSPI 119 (249)
Q Consensus 60 iI~L~g~----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN----SPGG~V~ag------------~aIyd~i~~~~~pV 119 (249)
+|.|+.| ++.++...+.+.+..++.++..+-|+|.=+ |.|+++.+. ..++..|..+++||
T Consensus 13 ~itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 92 (251)
T TIGR03189 13 RLRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPI 92 (251)
T ss_pred EEEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCE
Confidence 4677776 777788889888888886554443333211 334444320 12445677789999
Q ss_pred EEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhh
Q 025670 120 NTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKN 199 (249)
Q Consensus 120 ~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~ 199 (249)
++.+.|.|..+|.-|+++|| .|++.++++|.+-....|... ... ...+.+..| .....++
T Consensus 93 Iaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~Gl~p---~~~-------------~~~l~~~vg--~~~a~~l 152 (251)
T TIGR03189 93 LVAVRGQCLGGGLEVAAAGN--LMFAAPDAKLGQPEIVLGVFA---PAA-------------SCLLPERMG--RVAAEDL 152 (251)
T ss_pred EEEecCeeeeHHHHHHHhCC--EEEEcCCCEEeCchhhcCCCC---Cch-------------HHHHHHHhC--HHHHHHH
Confidence 99999999999999999999 799999998876433333211 110 001223333 2334455
Q ss_pred hcCCcccCHHHHHHcCCcceecCCC
Q 025670 200 MDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 200 ~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
+-....|+++||+++||||+|.+..
T Consensus 153 ~ltg~~~~a~eA~~~Glv~~v~~~~ 177 (251)
T TIGR03189 153 LYSGRSIDGAEGARIGLANAVAEDP 177 (251)
T ss_pred HHcCCCCCHHHHHHCCCcceecCcH
Confidence 5556678999999999999998643
No 63
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=98.59 E-value=1.2e-06 Score=77.99 Aligned_cols=146 Identities=17% Similarity=0.168 Sum_probs=95.3
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEE-----eCCCCcHHHH--------------HHHHHHHHhc
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYL-----NSPGGQVTAG--------------LAIYDTMQYI 115 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~I-----NSPGG~V~ag--------------~aIyd~i~~~ 115 (249)
+|.|+-| ++.++...+...+..++.++..+.|+|.= =|.|+++... ..+++.|..+
T Consensus 14 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (256)
T TIGR03210 14 WIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDV 93 (256)
T ss_pred EEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhC
Confidence 3555544 66778888888888887655444444421 1335555431 2245667788
Q ss_pred CCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHH
Q 025670 116 RSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEV 195 (249)
Q Consensus 116 ~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~ 195 (249)
++||++.+.|.|..+|.-|+++|| .|++.++++|.+-.+..|.. +.... ...+.+..|. ..
T Consensus 94 ~kPvIaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~G~~--~~~~~-------------~~~l~~~vG~--~~ 154 (256)
T TIGR03210 94 PKPVIARVQGYAIGGGNVLVTICD--LTIASEKAQFGQVGPKVGSV--DPGYG-------------TALLARVVGE--KK 154 (256)
T ss_pred CCCEEEEECCEEehhhHHHHHhCC--EEEEeCCCEEeccccccccc--CCccH-------------HHHHHHHhCH--HH
Confidence 999999999999999999999999 79999999987644333211 00000 0012223332 22
Q ss_pred HHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 196 IQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 196 i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
..+++-....|+|+||+++||||+|+...
T Consensus 155 A~~lll~g~~~~a~eA~~~Glv~~vv~~~ 183 (256)
T TIGR03210 155 AREIWYLCRRYTAQEALAMGLVNAVVPHD 183 (256)
T ss_pred HHHHHHhCCCcCHHHHHHcCCceeeeCHH
Confidence 33444446788999999999999998754
No 64
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=98.59 E-value=1.1e-06 Score=78.02 Aligned_cols=146 Identities=16% Similarity=0.123 Sum_probs=95.2
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEE----eCCCCcHHH--------------HHHHHHHHHhcC
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYL----NSPGGQVTA--------------GLAIYDTMQYIR 116 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~I----NSPGG~V~a--------------g~aIyd~i~~~~ 116 (249)
+|.|+-| ++.++.+.+...+..++.++..+.|+|.= =|.|+++.. ...++..|..++
T Consensus 18 ~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (251)
T PRK06023 18 VIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAE 97 (251)
T ss_pred EEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCC
Confidence 3566654 67788888988888888655444444321 133444431 123455677889
Q ss_pred CCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHH
Q 025670 117 SPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVI 196 (249)
Q Consensus 117 ~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i 196 (249)
+||++.+.|.|..+|.-|+++|| .|++.++++|.+.....|.. .+... . ..+.+..| ....
T Consensus 98 kPvIAav~G~a~GgG~~la~acD--~ria~~~a~f~~pe~~~Gl~---p~~g~--~----------~~l~~~~g--~~~a 158 (251)
T PRK06023 98 KPIVSGVDGLAIGIGTTIHLHCD--LTFASPRSLFRTPFVDLALV---PEAGS--S----------LLAPRLMG--HQRA 158 (251)
T ss_pred CCEEEEeCCceecHHHHHHHhCC--EEEEeCCCEecCcccccCCC---CCchH--H----------HHHHHHHh--HHHH
Confidence 99999999999999999999999 79999999998644333321 11100 0 00111122 2223
Q ss_pred HhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 197 QKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 197 ~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
.+++-....++++||+++||||+|++..
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 186 (251)
T PRK06023 159 FALLALGEGFSAEAAQEAGLIWKIVDEE 186 (251)
T ss_pred HHHHHhCCCCCHHHHHHcCCcceeeCHH
Confidence 3444445679999999999999998754
No 65
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=98.58 E-value=6.1e-07 Score=80.18 Aligned_cols=145 Identities=12% Similarity=0.149 Sum_probs=95.1
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe----CCCCcHHHH------------------HHHHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN----SPGGQVTAG------------------LAIYDTM 112 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN----SPGG~V~ag------------------~aIyd~i 112 (249)
+|.|+.| ++.++...+.+.+..++.++..+.|+|.=+ |-|+++..- ..+++.|
T Consensus 17 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 96 (262)
T PRK07468 17 TLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKAL 96 (262)
T ss_pred EEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHH
Confidence 4566654 667778888888887775444443433311 233554320 1245667
Q ss_pred HhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 025670 113 QYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQS 192 (249)
Q Consensus 113 ~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~ 192 (249)
+.+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|.. .+..- . .+..+. .
T Consensus 97 ~~~~kPvIaav~G~a~GgG~~lala~D--~ria~~~a~f~~pe~~~Gl~---p~~g~--~-----------~~~~~v--G 156 (262)
T PRK07468 97 NDLPKPLIGRIQGQAFGGGVGLISVCD--VAIAVSGARFGLTETRLGLI---PATIS--P-----------YVVARM--G 156 (262)
T ss_pred HcCCCCEEEEECCEEEhHHHHHHHhCC--EEEEeCCCEEeCchhccCCC---cccch--h-----------hHHhhc--c
Confidence 888999999999999999999999999 79999999887644333221 11100 0 011122 3
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 193 IEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 193 ~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
.....+++-....++++||+++||||+|....
T Consensus 157 ~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~ 188 (262)
T PRK07468 157 EANARRVFMSARLFDAEEAVRLGLLSRVVPAE 188 (262)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCcceecCHH
Confidence 34444566567888999999999999999754
No 66
>PLN02888 enoyl-CoA hydratase
Probab=98.58 E-value=1.8e-06 Score=77.44 Aligned_cols=144 Identities=18% Similarity=0.203 Sum_probs=95.0
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEeCC------CCcHHHH------------HHHHHHHHhcC
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLNSP------GGQVTAG------------LAIYDTMQYIR 116 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSP------GG~V~ag------------~aIyd~i~~~~ 116 (249)
+|.|+-+ ++.++...+...+..++.++..+.|+| .+. |+++... ..++..|..++
T Consensus 22 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~ 99 (265)
T PLN02888 22 TITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIIL--TGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCR 99 (265)
T ss_pred EEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEE--ECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCC
Confidence 3566655 777788889888888886554444443 343 3555321 12445577789
Q ss_pred CCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHH
Q 025670 117 SPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVI 196 (249)
Q Consensus 117 ~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i 196 (249)
+||++.+.|.|..+|..|+++|| .|++.+++.|.+-....|. ..+..- ...+.+..| ....
T Consensus 100 kPvIaav~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~Gl---~p~~g~------------~~~l~~~vG--~~~a 160 (265)
T PLN02888 100 KPIIGAINGFAITAGFEIALACD--ILVASRGAKFIDTHAKFGI---FPSWGL------------SQKLSRIIG--ANRA 160 (265)
T ss_pred CCEEEEECCeeechHHHHHHhCC--EEEecCCCEecCccccccC---CCCccH------------hhHHHHHhC--HHHH
Confidence 99999999999999999999999 7999999988753322221 111100 011222223 2333
Q ss_pred HhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 197 QKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 197 ~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
.+++-....|+++||+++||||+|++..
T Consensus 161 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 188 (265)
T PLN02888 161 REVSLTAMPLTAETAERWGLVNHVVEES 188 (265)
T ss_pred HHHHHhCCccCHHHHHHcCCccEeeChH
Confidence 4444445688999999999999999754
No 67
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=98.58 E-value=1.1e-06 Score=78.16 Aligned_cols=143 Identities=13% Similarity=0.150 Sum_probs=95.2
Q ss_pred EEEEcce----eCcchHHHHHHHHHHhhhcCCCCCeEEEE----eCCCCcHHHH----------------HHHHHHHHhc
Q 025670 60 IICINGP----INDDTAHVVVAQLLFLESENPSKPIHMYL----NSPGGQVTAG----------------LAIYDTMQYI 115 (249)
Q Consensus 60 iI~L~g~----Id~~~a~~i~a~L~~l~~~~~~~~I~l~I----NSPGG~V~ag----------------~aIyd~i~~~ 115 (249)
+|.|+-| ++.++...+...+..++.++..+.|+|.= =|-|+++..- ..+++.|..+
T Consensus 14 ~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 93 (249)
T PRK07938 14 EVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYEC 93 (249)
T ss_pred EEEECCCCcccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhC
Confidence 4566655 66777888888888877655444443321 1344565421 1234556778
Q ss_pred CCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHH
Q 025670 116 RSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEV 195 (249)
Q Consensus 116 ~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~ 195 (249)
++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|..|-. ..+.+..| ...
T Consensus 94 ~kPvIAav~G~a~GgG~~Lal~cD--~ria~~~a~f~~pe~~~G~~g~~------------------~~l~~~vg--~~~ 151 (249)
T PRK07938 94 AVPVIAAVHGFCLGGGIGLVGNAD--VIVASDDATFGLPEVDRGALGAA------------------THLQRLVP--QHL 151 (249)
T ss_pred CCCEEEEEcCEEeehHHHHHHhCC--EEEEeCCCEeeCccceecCchhH------------------HHHHHhcC--HHH
Confidence 999999999999999999999999 79999999887633333322110 00122223 333
Q ss_pred HHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 196 IQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 196 i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
..+++-....++++||+++||||+|+...
T Consensus 152 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 180 (249)
T PRK07938 152 MRALFFTAATITAAELHHFGSVEEVVPRD 180 (249)
T ss_pred HHHHHHhCCcCCHHHHHHCCCccEEeCHH
Confidence 44555556788999999999999999754
No 68
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=98.57 E-value=1.5e-06 Score=78.21 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=94.4
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEeC------CCCcHHHH-----------------------
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLNS------PGGQVTAG----------------------- 105 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~INS------PGG~V~ag----------------------- 105 (249)
+|.|+-| ++.++...+.+.|..++.++..+.|+ |.+ -|+++...
T Consensus 20 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvV--ltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (275)
T PLN02664 20 HLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVII--LSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKI 97 (275)
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEE--EECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHH
Confidence 4566655 77788888888888887655444333 333 33444321
Q ss_pred ---HHHHHHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHH
Q 025670 106 ---LAIYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALN 182 (249)
Q Consensus 106 ---~aIyd~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~ 182 (249)
..+++.|..+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|.. .+... .
T Consensus 98 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~Gl~---p~~g~----~-------- 160 (275)
T PLN02664 98 KFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACD--IRYCSEDAFFSVKEVDLAIT---ADLGT----L-------- 160 (275)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCC--EEEecCCCEeccHHHhhCCC---CCccH----H--------
Confidence 1244567788999999999999999999999999 79999999987643332221 11110 0
Q ss_pred HHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 025670 183 ALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQ 223 (249)
Q Consensus 183 ~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~ 223 (249)
..+.+..|. ....+++-....|+++||+++||||+|++.
T Consensus 161 ~~l~~~vG~--~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~ 199 (275)
T PLN02664 161 QRLPSIVGY--GNAMELALTGRRFSGSEAKELGLVSRVFGS 199 (275)
T ss_pred HHHHHHhCH--HHHHHHHHhCCCCCHHHHHHcCCCceeeCC
Confidence 001122232 233444445678899999999999999974
No 69
>PRK08139 enoyl-CoA hydratase; Validated
Probab=98.57 E-value=2e-06 Score=77.14 Aligned_cols=143 Identities=14% Similarity=0.219 Sum_probs=95.0
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCC------CcHHHH----------------HHHHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLNSPG------GQVTAG----------------LAIYDTM 112 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPG------G~V~ag----------------~aIyd~i 112 (249)
+|.|+.| ++.++...+.+.+..++.++..+.|+| .+.| +++... ..++..|
T Consensus 23 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l 100 (266)
T PRK08139 23 TLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVL--AAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAI 100 (266)
T ss_pred EEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEE--ecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 3566654 677788888888888776544333333 4433 443210 1244557
Q ss_pred HhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 025670 113 QYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQS 192 (249)
Q Consensus 113 ~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~ 192 (249)
..+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|......-. . +.+..|
T Consensus 101 ~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~p~~~~~------------~----l~r~vG-- 160 (266)
T PRK08139 101 VALPQPVIARVHGIATAAGCQLVASCD--LAVAADTARFAVPGVNIGLFCSTPMV------------A----LSRNVP-- 160 (266)
T ss_pred HhCCCCEEEEECceeeHHHHHHHHhCC--EEEEeCCCEEeCcccCcCCCCCccHH------------H----HHHHhC--
Confidence 788999999999999999999999999 79999999987654444432111000 0 122233
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 193 IEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 193 ~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
.....+++-....++|+||+++||||+|+...
T Consensus 161 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 192 (266)
T PRK08139 161 RKQAMEMLLTGEFIDAATAREWGLVNRVVPAD 192 (266)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCccEeeChh
Confidence 23344555556788999999999999999754
No 70
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=98.56 E-value=1.6e-06 Score=77.79 Aligned_cols=143 Identities=15% Similarity=0.208 Sum_probs=93.8
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCC------CcHHHH-----------------------
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLNSPG------GQVTAG----------------------- 105 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPG------G~V~ag----------------------- 105 (249)
+|.|+-| ++.++...+.+.+..++.++..+-|+| .+.| +++..-
T Consensus 18 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl--~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (272)
T PRK06142 18 QVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVL--SGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREI 95 (272)
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEE--ECCCCceecccCHHHHhhhcccccccccccchHHHHHHH
Confidence 3566665 777888888888888876443333333 3433 444321
Q ss_pred ---HHHHHHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHH
Q 025670 106 ---LAIYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALN 182 (249)
Q Consensus 106 ---~aIyd~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~ 182 (249)
..+++.|..+++||++.+.|.|..+|.-|+++|| .|++.++++|.+.....|.. ..... .
T Consensus 96 ~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~---p~~g~------------~ 158 (272)
T PRK06142 96 LRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACD--MRYASADAKFSVREVDLGMV---ADVGS------------L 158 (272)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCC--EEEecCCCeecchhhhhCCC---CCchH------------H
Confidence 2234556778999999999999999999999999 79999999887654433321 11110 0
Q ss_pred HHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 025670 183 ALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQ 223 (249)
Q Consensus 183 ~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~ 223 (249)
..+.+..|. ....+++-....++++||+++||||+|+.+
T Consensus 159 ~~l~~~~G~--~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~ 197 (272)
T PRK06142 159 QRLPRIIGD--GHLRELALTGRDIDAAEAEKIGLVNRVYDD 197 (272)
T ss_pred HHHHHHhCH--HHHHHHHHhCCCcCHHHHHHcCCccEecCC
Confidence 011122232 233444445677899999999999999975
No 71
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=98.56 E-value=1.8e-06 Score=77.27 Aligned_cols=146 Identities=17% Similarity=0.160 Sum_probs=92.0
Q ss_pred EEEEcce-----eCc-chHHHHHHHHHHhhhcCCCCCeEEEEe----CCCCcHHHH----------------------HH
Q 025670 60 IICINGP-----IND-DTAHVVVAQLLFLESENPSKPIHMYLN----SPGGQVTAG----------------------LA 107 (249)
Q Consensus 60 iI~L~g~-----Id~-~~a~~i~a~L~~l~~~~~~~~I~l~IN----SPGG~V~ag----------------------~a 107 (249)
+|.|+-| ++. ++...+.+.+..++.++..+-|+|.=+ |.|+++... ..
T Consensus 15 ~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (266)
T PRK09245 15 TLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQR 94 (266)
T ss_pred EEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHHHHHHHHHHH
Confidence 3555544 553 667778888887776554444443211 344444221 12
Q ss_pred HHHHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 025670 108 IYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCK 187 (249)
Q Consensus 108 Iyd~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~ 187 (249)
+++.|..+++||++.+.|.|..+|.-|+++|| .|++.+++.|.+-....|.. .+..- ...+.+
T Consensus 95 ~~~~l~~~~kpvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G~~---p~~g~------------~~~l~~ 157 (266)
T PRK09245 95 IPLALYNLEVPVIAAVNGPAIGAGCDLACMCD--IRIASETARFAESFVKLGLI---PGDGG------------AWLLPR 157 (266)
T ss_pred HHHHHHcCCCCEEEEECCEeecHHHHHHHhCC--EEEecCCCEEcccccccCcC---CCcch------------hhhHHH
Confidence 34566778999999999999999999999999 79999999987644443321 11100 000111
Q ss_pred hhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 188 HTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 188 ~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
..|. ....+++-....|+++||+++||||+|+...
T Consensus 158 ~vG~--~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 192 (266)
T PRK09245 158 IIGM--ARAAEMAFTGDAIDAATALEWGLVSRVVPAD 192 (266)
T ss_pred HhhH--HHHHHHHHcCCCcCHHHHHHcCCcceecCHH
Confidence 2222 2233444446788999999999999998754
No 72
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=98.56 E-value=2.2e-06 Score=76.91 Aligned_cols=145 Identities=15% Similarity=0.114 Sum_probs=97.1
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEeCC-------CCcHHHH-----------------HHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLNSP-------GGQVTAG-----------------LAIYD 110 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSP-------GG~V~ag-----------------~aIyd 110 (249)
+|.|+-| ++.++...+...+..++.++..+.|+ |.+. |+++... ..+++
T Consensus 23 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vV--l~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (269)
T PRK06127 23 RITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVV--LTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQA 100 (269)
T ss_pred EEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEE--EEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 4666655 67788889999998888755444333 3443 3444310 12345
Q ss_pred HHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhC
Q 025670 111 TMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTG 190 (249)
Q Consensus 111 ~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg 190 (249)
.|..+++||++.+.|.|..+|.-|+++|| .|++.++++|.+.....|......-. ..+.+..|
T Consensus 101 ~i~~~~kPvIaav~G~a~GgG~~LalacD--~~ia~~~a~f~~pe~~~Gl~p~~g~~---------------~~l~~~vG 163 (269)
T PRK06127 101 ALADYAKPTIACIRGYCIGGGMGIALACD--IRIAAEDSRFGIPAARLGLGYGYDGV---------------KNLVDLVG 163 (269)
T ss_pred HHHhCCCCEEEEECCEEecHHHHHHHhCC--EEEeeCCCEeeCchhhhCCCCCccHH---------------HHHHHHhC
Confidence 56778999999999999999999999999 79999999998765443321100000 00112223
Q ss_pred CCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 191 QSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 191 ~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
.....+++-....++++||+++||||+|++..+
T Consensus 164 --~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 196 (269)
T PRK06127 164 --PSAAKDLFYTARRFDAAEALRIGLVHRVTAADD 196 (269)
T ss_pred --HHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHH
Confidence 233445555567899999999999999997543
No 73
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=98.55 E-value=2.4e-06 Score=76.26 Aligned_cols=146 Identities=16% Similarity=0.142 Sum_probs=93.9
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe-----CCCCcHHHHH----------HH--HHHHHhcCC
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN-----SPGGQVTAGL----------AI--YDTMQYIRS 117 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN-----SPGG~V~ag~----------aI--yd~i~~~~~ 117 (249)
+|.|+-| ++.++...+...+..++.++..+.|+|.=+ |.|+++.... .+ +..+..+++
T Consensus 16 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~k 95 (259)
T PRK06494 16 IVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDK 95 (259)
T ss_pred EEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCC
Confidence 3555544 667778888888888876555444444221 2255553211 11 122335689
Q ss_pred CEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHH
Q 025670 118 PINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQ 197 (249)
Q Consensus 118 pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~ 197 (249)
||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|.. .+..- . ..+.+..| .....
T Consensus 96 PvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~---p~~g~----~--------~~l~~~vg--~~~a~ 156 (259)
T PRK06494 96 PIIAAVNGVAMGGGFELALACD--LIVAAENATFALPEPRVGLA---ALAGG----L--------HRLPRQIG--LKRAM 156 (259)
T ss_pred CEEEEECCEEecHHHHHHHhCC--EEEEeCCCEEeCcccccCCC---CCchH----H--------HHHHHHcC--HHHHH
Confidence 9999999999999999999999 79999999988755443321 11100 0 01222333 33334
Q ss_pred hhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 198 KNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 198 ~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
+++-....++++||+++||||+|+...
T Consensus 157 ~lll~g~~~~a~eA~~~GLv~~vv~~~ 183 (259)
T PRK06494 157 GMILTGRRVTAREGLELGFVNEVVPAG 183 (259)
T ss_pred HHHHcCCcCCHHHHHHcCCCcEecCHh
Confidence 455556789999999999999999754
No 74
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=98.55 E-value=1.3e-06 Score=77.94 Aligned_cols=145 Identities=17% Similarity=0.136 Sum_probs=93.8
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe-----CCCCcHHH----------------HHHHHHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN-----SPGGQVTA----------------GLAIYDTMQ 113 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN-----SPGG~V~a----------------g~aIyd~i~ 113 (249)
+|.|+-| ++.++...+.+.+..++.++..+.|+|.=. |.|+++.. ...+++.|.
T Consensus 15 ~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (259)
T TIGR01929 15 KITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIR 94 (259)
T ss_pred EEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHH
Confidence 3566654 667778888888888776544443333211 22344321 113456677
Q ss_pred hcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCC-CchhhHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 025670 114 YIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYS-GQAKDMTIHTKQIVRVWDALNALYCKHTGQS 192 (249)
Q Consensus 114 ~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~-G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~ 192 (249)
.+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|.. +-.. . . . +.+..|
T Consensus 95 ~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~G~~p~~~~-~----~-------~----l~~~vG-- 154 (259)
T TIGR01929 95 TCPKPVIAMVNGYAIGGGHVLHVVCD--LTIAAENARFGQTGPKVGSFDGGYG-S----S-------Y----LARIVG-- 154 (259)
T ss_pred hCCCCEEEEEcCEEehHHHHHHHhCC--EEEecCCCEecCcccccccCCCccH-H----H-------H----HHHHhH--
Confidence 88999999999999999999999999 79999999988755443321 1000 0 0 0 111222
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 193 IEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 193 ~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
.....+++-....++++||+++||||+|+...
T Consensus 155 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 186 (259)
T TIGR01929 155 QKKAREIWFLCRQYDAEQALDMGLVNTVVPLA 186 (259)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCcccccCHH
Confidence 12233444455678999999999999998754
No 75
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=98.55 E-value=2e-06 Score=76.11 Aligned_cols=141 Identities=14% Similarity=0.140 Sum_probs=92.6
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEeCC------CCcHHH----------HHHHHHHHHhcCCC
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLNSP------GGQVTA----------GLAIYDTMQYIRSP 118 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSP------GG~V~a----------g~aIyd~i~~~~~p 118 (249)
+|.|+-| ++.++...+...+..++. +..+- |.|.+. |+++.. ...++..|..+++|
T Consensus 12 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~-~~vr~--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP 88 (243)
T PRK07854 12 TIELQRPERRNALNAELCEELREAVRKAVD-ESARA--IVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVP 88 (243)
T ss_pred EEEeCCCccccCCCHHHHHHHHHHHHHHhc-CCceE--EEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 4666644 778888888888887763 33333 333443 444421 12355667788999
Q ss_pred EEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHh
Q 025670 119 INTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQK 198 (249)
Q Consensus 119 V~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~ 198 (249)
|++.+.|.|..+|.-|+++|| .|++.++++|.+-....|. ..+.. ....+.+..|. ....+
T Consensus 89 ~Iaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~G~---~p~~g------------~~~~l~~~~G~--~~a~~ 149 (243)
T PRK07854 89 VIAAINGPAIGAGLQLAMACD--LRVVAPEAYFQFPVAKYGI---ALDNW------------TIRRLSSLVGG--GRARA 149 (243)
T ss_pred EEEEecCcccccHHHHHHhCC--EEEEcCCCEEecccccccc---CCCcc------------HHHHHHHHhCH--HHHHH
Confidence 999999999999999999999 7999999998753222221 11110 00112223332 33445
Q ss_pred hhcCCcccCHHHHHHcCCcceecC
Q 025670 199 NMDRDYFMTPEEAKEFGIIDEVID 222 (249)
Q Consensus 199 ~~~~d~~lsa~EA~e~GlID~I~~ 222 (249)
++-....|+++||+++||||+|.+
T Consensus 150 l~ltg~~~~a~eA~~~Glv~~v~~ 173 (243)
T PRK07854 150 MLLGAEKLTAEQALATGMANRIGT 173 (243)
T ss_pred HHHcCCCcCHHHHHHCCCcccccC
Confidence 555567899999999999999954
No 76
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=98.54 E-value=1.4e-06 Score=78.47 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=94.0
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEE----eCCCCcHHHH----------------------HHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYL----NSPGGQVTAG----------------------LAI 108 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~I----NSPGG~V~ag----------------------~aI 108 (249)
+|.|+-| ++.++...+...+..++.++..+.|+|.= =|.|+++... ..+
T Consensus 22 ~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (276)
T PRK05864 22 LITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDV 101 (276)
T ss_pred EEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHH
Confidence 3566654 67778888888888887655444444421 1344554321 123
Q ss_pred HHHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 025670 109 YDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKH 188 (249)
Q Consensus 109 yd~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~ 188 (249)
++.|..+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|... .+... ...+.+.
T Consensus 102 ~~~l~~~~kPvIaav~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~~Gl~p--~~~g~------------~~~l~~~ 165 (276)
T PRK05864 102 ILALRRLHQPVIAAVNGPAIGGGLCLALAAD--IRVASSSAYFRAAGINNGLTA--SELGL------------SYLLPRA 165 (276)
T ss_pred HHHHHhCCCCEEEEECCEeehhHHHHHHhCC--EEEeeCCCEecCcccccCCCC--CCcch------------heehHhh
Confidence 4556778999999999999999999999999 799999998875333322110 01100 0001222
Q ss_pred hCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 189 TGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 189 tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
.|. ....+++-....++|+||+++||||+|....
T Consensus 166 vG~--~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 199 (276)
T PRK05864 166 IGS--SRAFEIMLTGRDVDAEEAERIGLVSRQVPDE 199 (276)
T ss_pred hCH--HHHHHHHHcCCccCHHHHHHcCCcceeeCHH
Confidence 332 3334444445568999999999999998754
No 77
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=98.54 E-value=1.9e-06 Score=77.56 Aligned_cols=146 Identities=16% Similarity=0.125 Sum_probs=95.9
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEE-----eCCCCcHHH----------------HHHHHHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYL-----NSPGGQVTA----------------GLAIYDTMQ 113 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~I-----NSPGG~V~a----------------g~aIyd~i~ 113 (249)
+|.|+-| ++.++...+.+.+..++.++..+.|+|.= =|.|+++.. ...+++.|.
T Consensus 25 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~ 104 (273)
T PRK07396 25 KITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIR 104 (273)
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHH
Confidence 3566644 67778888999998888655555444422 133454431 012445677
Q ss_pred hcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCH
Q 025670 114 YIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSI 193 (249)
Q Consensus 114 ~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~ 193 (249)
.+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-.+..|.. ....- . ..+.+..| .
T Consensus 105 ~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~---p~~~~----~--------~~l~~~vG--~ 165 (273)
T PRK07396 105 TCPKPVIAMVAGYAIGGGHVLHLVCD--LTIAADNAIFGQTGPKVGSF---DGGYG----A--------SYLARIVG--Q 165 (273)
T ss_pred hCCCCEEEEECCEEehHHHHHHHhCC--EEEeeCCcEEeccccccccc---CCchH----H--------HHHHHHhh--H
Confidence 88999999999999999999999999 79999999988644433211 11000 0 00112223 2
Q ss_pred HHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 194 EVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 194 ~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
....+++-....|+|+||+++||||+|+...
T Consensus 166 ~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~ 196 (273)
T PRK07396 166 KKAREIWFLCRQYDAQEALDMGLVNTVVPLA 196 (273)
T ss_pred HHHHHHHHhCCCcCHHHHHHcCCcCeecCHH
Confidence 3334444456789999999999999998754
No 78
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.54 E-value=1.6e-06 Score=81.98 Aligned_cols=136 Identities=20% Similarity=0.284 Sum_probs=92.2
Q ss_pred CcEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHH-------HHHHHHHHH---HhcCCCEEEEEcccc
Q 025670 58 ERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVT-------AGLAIYDTM---QYIRSPINTICLGQA 127 (249)
Q Consensus 58 ~riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~-------ag~aIyd~i---~~~~~pV~tv~~G~A 127 (249)
+++-.-.|.++++-+......+...+.- .-||+-+|||||..+. .+.+|...+ -..+.|+++++.|-+
T Consensus 193 e~~~rnfG~~~peGyRKAlR~mklAekf--~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeG 270 (431)
T PLN03230 193 ENIYRNFAMPQPNGYRKALRFMRHAEKF--GFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEG 270 (431)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 3333444667777777776666655542 4799999999997641 134565544 355789999999999
Q ss_pred chHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccC
Q 025670 128 ASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMT 207 (249)
Q Consensus 128 ASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~ls 207 (249)
.|+|++.+.+|+ ..+|.|++.+.+-.|.+.+ .++-+..... ++..+ ..-+|
T Consensus 271 gSGGAlalg~aD--~VlMle~A~ysVisPEgaA----------------------sILwkd~~~A-~eAAe----alkit 321 (431)
T PLN03230 271 GSGGALAIGCGN--RMLMMENAVYYVASPEACA----------------------AILWKSAAAA-PKAAE----ALRIT 321 (431)
T ss_pred CcHHHHHhhcCC--EEEEecCCEEEecCHHHHH----------------------HHHhccccch-HHHHH----HcCCC
Confidence 999999998888 7999999999887664310 0000000001 11111 23679
Q ss_pred HHHHHHcCCcceecCCC
Q 025670 208 PEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 208 a~EA~e~GlID~I~~~~ 224 (249)
|.+++++|+||+|+...
T Consensus 322 A~dL~~~GiID~II~Ep 338 (431)
T PLN03230 322 AAELVKLGVVDEIVPEP 338 (431)
T ss_pred HHHHHhCCCCeEeccCC
Confidence 99999999999999864
No 79
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=98.54 E-value=1.6e-06 Score=78.37 Aligned_cols=147 Identities=14% Similarity=0.156 Sum_probs=97.0
Q ss_pred EEEEcce----eCcchHHHHHHHHHHhhhcCCCCCeEEEE------eCCCCcHHHH-----------------HHHHHHH
Q 025670 60 IICINGP----INDDTAHVVVAQLLFLESENPSKPIHMYL------NSPGGQVTAG-----------------LAIYDTM 112 (249)
Q Consensus 60 iI~L~g~----Id~~~a~~i~a~L~~l~~~~~~~~I~l~I------NSPGG~V~ag-----------------~aIyd~i 112 (249)
+|.|+.+ ++.++...+.+.+..++.++..+.|+|.= =|.|+++... ..++..|
T Consensus 24 ~itlnr~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l 103 (278)
T PLN03214 24 VVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRL 103 (278)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 4566644 66778888989998888655555444421 1334444321 1134557
Q ss_pred HhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 025670 113 QYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQS 192 (249)
Q Consensus 113 ~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~ 192 (249)
+.+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|.. ..+... ...+.+..|
T Consensus 104 ~~~~kPvIAaV~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~lGl~--~p~~~~------------~~~l~~~~G-- 165 (278)
T PLN03214 104 LRSRLATVCAIRGACPAGGCAVSLCCD--YRLQTTEGTMGLNEVALGIP--VPKFWA------------RLFMGRVID-- 165 (278)
T ss_pred HcCCCCEEEEEcCcccchHHHHHHhCC--EEEecCCCEecCcHHHhCCC--CCChhH------------HHHHHHhcC--
Confidence 778899999999999999999999999 79999999987643332220 011100 012333333
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 193 IEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 193 ~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
.....+++-...-|+++||+++||||+|+...
T Consensus 166 ~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~ 197 (278)
T PLN03214 166 RKVAESLLLRGRLVRPAEAKQLGLIDEVVPAA 197 (278)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCcEecChH
Confidence 34445555566789999999999999998754
No 80
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=98.54 E-value=2e-06 Score=76.76 Aligned_cols=143 Identities=15% Similarity=0.197 Sum_probs=94.5
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEeCC------CCcHHHH------------------HHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLNSP------GGQVTAG------------------LAIYD 110 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSP------GG~V~ag------------------~aIyd 110 (249)
+|.|+-| ++.++...+...+..++.++..+.|+ |.+. |+++..- ..++.
T Consensus 16 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vV--ltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
T PRK05995 16 TVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVV--LAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLR 93 (262)
T ss_pred EEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEE--EECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHH
Confidence 4566654 67778888888888887654444333 3343 3444210 12345
Q ss_pred HHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhC
Q 025670 111 TMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTG 190 (249)
Q Consensus 111 ~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg 190 (249)
.|..+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|.. .+... . .+.+..|
T Consensus 94 ~l~~~~kPvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~---p~~g~--~-----------~l~~~vg 155 (262)
T PRK05995 94 AIYRCPKPVIARVHGDAYAGGMGLVAACD--IAVAADHAVFCLSEVRLGLI---PATIS--P-----------YVIRAMG 155 (262)
T ss_pred HHHcCCCCEEEEECCEEEhhHHHHHHhCC--EEEeeCCCEEeCcccccccC---ccchH--H-----------HHHHHhC
Confidence 56678999999999999999999999999 79999999987744433321 11110 0 0122233
Q ss_pred CCHHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 191 QSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 191 ~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
.....+++-....++|+||+++||||+|+...
T Consensus 156 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 187 (262)
T PRK05995 156 --ERAARRYFLTAERFDAAEALRLGLVHEVVPAE 187 (262)
T ss_pred --HHHHHHHHHcCCccCHHHHHHcCCCCeecCHH
Confidence 33344555556778999999999999999643
No 81
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=98.54 E-value=2.4e-06 Score=76.17 Aligned_cols=145 Identities=14% Similarity=0.153 Sum_probs=94.6
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCC-------CcHHH---------------HHHHHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLNSPG-------GQVTA---------------GLAIYDTM 112 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPG-------G~V~a---------------g~aIyd~i 112 (249)
+|.|+-| ++.++...+.+.+..++.++..+. |.|.+.| +++.. ...+++.|
T Consensus 16 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~--vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l 93 (260)
T PRK07657 16 KITLNRPRAANALSLALLEELQNILTQINEEANVRV--VILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMV 93 (260)
T ss_pred EEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEE--EEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHH
Confidence 3566654 777888889889888886554443 3334444 33321 12345667
Q ss_pred HhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 025670 113 QYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQS 192 (249)
Q Consensus 113 ~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~ 192 (249)
..+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|.. .+..-. . . +.+..|
T Consensus 94 ~~~~kPvIaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~G~~---p~~g~~-~-------~----l~~~vG-- 154 (260)
T PRK07657 94 EQLPQPVIAAINGIALGGGLELALACD--FRIAAESASLGLTETTLAII---PGAGGT-Q-------R----LPRLIG-- 154 (260)
T ss_pred HhCCCCEEEEEcCEeechHHHHHHhCC--EEEeeCCCEEcCchhccCcC---CCccHH-H-------H----HHHHhC--
Confidence 778999999999999999999999999 79999999887644433321 111000 0 0 111112
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 193 IEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 193 ~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
.....+++-....++++||+++||||+|+...+
T Consensus 155 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 187 (260)
T PRK07657 155 VGRAKELIYTGRRISAQEAKEIGLVEFVVPAHL 187 (260)
T ss_pred HHHHHHHHHhCCCCCHHHHHHcCCCCeecCHHH
Confidence 223334444456799999999999999987643
No 82
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=98.53 E-value=9.1e-07 Score=78.74 Aligned_cols=146 Identities=14% Similarity=0.125 Sum_probs=93.5
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe----CCCCcHHHH------------------HHHHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN----SPGGQVTAG------------------LAIYDTM 112 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN----SPGG~V~ag------------------~aIyd~i 112 (249)
+|.|+-| ++.++...+...+..++.++ .+.|+|.=+ |.|+++... ..+++.|
T Consensus 11 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 89 (256)
T TIGR02280 11 RLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRL 89 (256)
T ss_pred EEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHH
Confidence 3566654 67778888888898887654 544444211 333443210 1134567
Q ss_pred HhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 025670 113 QYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQS 192 (249)
Q Consensus 113 ~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~ 192 (249)
..+++||++.+.|.|..+|.-|+++|| .|++.+++.|.+-....|. ..+..-. ..+.+..|.
T Consensus 90 ~~~~kPvIaav~G~a~GgG~~lala~D--~ria~~~a~f~~pe~~lG~---~p~~g~~------------~~l~~~vG~- 151 (256)
T TIGR02280 90 RALPLPVVCAVNGVAAGAGANLALACD--IVLAAESARFIQAFAKIGL---IPDSGGT------------WSLPRLVGR- 151 (256)
T ss_pred HhCCCCEEEEECCeeehHHHHHHHhCC--EEEecCCCEEeChhhhcCC---CCCccHH------------HHHHHHhCH-
Confidence 788999999999999999999999999 7999999998753332221 1111000 001112222
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 193 IEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 193 ~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
....+++-....++++||+++||||+|....+
T Consensus 152 -~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 183 (256)
T TIGR02280 152 -ARAMGLAMLGEKLDARTAASWGLIWQVVDDAA 183 (256)
T ss_pred -HHHHHHHHcCCCCCHHHHHHcCCcceeeChHH
Confidence 23334444567789999999999999987653
No 83
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=98.53 E-value=1.8e-06 Score=76.76 Aligned_cols=145 Identities=17% Similarity=0.200 Sum_probs=94.1
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCC------CcHHH-------------------HHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLNSPG------GQVTA-------------------GLAIY 109 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPG------G~V~a-------------------g~aIy 109 (249)
+|.|+.| ++.++...+.+.+..++.++..+.|+ |.+.| +++.. ...++
T Consensus 14 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vV--l~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (255)
T PRK07260 14 TLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLL--INANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEIS 91 (255)
T ss_pred EEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEE--EECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHH
Confidence 3566654 67778888888888877655444333 34444 44321 12244
Q ss_pred HHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 025670 110 DTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHT 189 (249)
Q Consensus 110 d~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~t 189 (249)
..|..+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|. ..+..- . ..+.+..
T Consensus 92 ~~l~~~~kPvIaav~G~a~GgG~~lala~D--~ria~~~a~f~~pe~~~Gl---~p~~g~-------~-----~~l~~~v 154 (255)
T PRK07260 92 FAIKQLPKPVIMCVDGAVAGAAANMAVAAD--FCIASTKTKFIQAFVGVGL---APDAGG-------L-----FLLTRAI 154 (255)
T ss_pred HHHHcCCCCEEEEecCeeehhhHHHHHhCC--EEEEeCCCEEechHhhcCC---CCCCch-------h-----hhhHHhh
Confidence 566778999999999999999999999999 7999999988752211111 111100 0 0111222
Q ss_pred CCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 190 GQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 190 g~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
| .....+++-....++|+||+++||||+|++..+
T Consensus 155 g--~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~ 188 (255)
T PRK07260 155 G--LNRATHLAMTGEALTAEKALEYGFVYRVAESEK 188 (255)
T ss_pred C--HHHHHHHHHhCCccCHHHHHHcCCcceecCHhH
Confidence 2 233455555677899999999999999987543
No 84
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.53 E-value=1.5e-06 Score=80.05 Aligned_cols=137 Identities=24% Similarity=0.366 Sum_probs=93.9
Q ss_pred cCcEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHH-------HHHHHHHHH---HhcCCCEEEEEccc
Q 025670 57 KERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVT-------AGLAIYDTM---QYIRSPINTICLGQ 126 (249)
Q Consensus 57 ~~riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~-------ag~aIyd~i---~~~~~pV~tv~~G~ 126 (249)
++++-...|.++++-+......+...+.- .-||+-.+||||..+. .+.+|...+ ...+.|+.+++.|-
T Consensus 122 ~e~~~~~~G~~~peg~rKa~R~m~lA~~f--~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGe 199 (319)
T PRK05724 122 KEKIRRNFGMPRPEGYRKALRLMKMAEKF--GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGE 199 (319)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 44555567777787777776666555432 4699999999997542 123444444 45679999999999
Q ss_pred cchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCccc
Q 025670 127 AASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFM 206 (249)
Q Consensus 127 AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~l 206 (249)
|.|+|++.+..++ ..+|.|++.+.+-.|.+.+ .+ +++ ... ..++..+ ..-+
T Consensus 200 g~sGGAla~~~aD--~v~m~~~A~~svisPEg~a-----~I---------l~~--------~~~-~a~~aae----~~~i 250 (319)
T PRK05724 200 GGSGGALAIGVGD--RVLMLEYSTYSVISPEGCA-----SI---------LWK--------DAS-KAPEAAE----AMKI 250 (319)
T ss_pred ccHHHHHHHhccC--eeeeecCceEeecCHHHHH-----HH---------Hhc--------Cch-hHHHHHH----HcCC
Confidence 9999999888888 7999999999887765320 00 000 001 1122222 3447
Q ss_pred CHHHHHHcCCcceecCCC
Q 025670 207 TPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 207 sa~EA~e~GlID~I~~~~ 224 (249)
|+.++++.|+||+|+...
T Consensus 251 ta~~l~~~g~iD~II~Ep 268 (319)
T PRK05724 251 TAQDLKELGIIDEIIPEP 268 (319)
T ss_pred CHHHHHHCCCceEeccCC
Confidence 999999999999999754
No 85
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.53 E-value=3.9e-06 Score=75.24 Aligned_cols=137 Identities=23% Similarity=0.358 Sum_probs=95.5
Q ss_pred cCcEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHH-------HHHHHHHHH---hcCCCEEEEEccc
Q 025670 57 KERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTA-------GLAIYDTMQ---YIRSPINTICLGQ 126 (249)
Q Consensus 57 ~~riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~a-------g~aIyd~i~---~~~~pV~tv~~G~ 126 (249)
++++....|.++++-+......+...+.. .-||+-.+||||..+.. +..+...+. ..+.|+.+++.|-
T Consensus 69 ~d~~~~~~G~~~~~g~rKa~R~~~lA~~~--~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~ 146 (256)
T PRK12319 69 QDNLKRNFGQPHPEGYRKALRLMKQAEKF--GRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGE 146 (256)
T ss_pred ccceeeeCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 45666677888888777776666554432 47999999999986411 234555444 3468999999999
Q ss_pred cchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCccc
Q 025670 127 AASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFM 206 (249)
Q Consensus 127 AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~l 206 (249)
|.|+|++.+..++ ..+|.|++.+.+-.|.+.. .+ +++ .....++..+.+ -+
T Consensus 147 ~~gGgA~a~~~~D--~v~m~~~a~~~v~~pe~~a-----~i---------l~~---------~~~~a~~aa~~~----~~ 197 (256)
T PRK12319 147 GGSGGALALAVAD--QVWMLENTMYAVLSPEGFA-----SI---------LWK---------DGSRATEAAELM----KI 197 (256)
T ss_pred cCcHHHHHhhcCC--EEEEecCceEEEcCHHHHH-----HH---------Hhc---------CcccHHHHHHHc----CC
Confidence 9999999999888 7999999999887764320 00 000 001122222322 34
Q ss_pred CHHHHHHcCCcceecCCC
Q 025670 207 TPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 207 sa~EA~e~GlID~I~~~~ 224 (249)
|+.++.+.|+||+|++..
T Consensus 198 ~a~~l~~~g~iD~ii~e~ 215 (256)
T PRK12319 198 TAGELLEMGVVDKVIPEH 215 (256)
T ss_pred CHHHHHHCCCCcEecCCC
Confidence 999999999999999864
No 86
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.53 E-value=2.5e-06 Score=74.71 Aligned_cols=142 Identities=18% Similarity=0.249 Sum_probs=90.9
Q ss_pred EEEEcce----eCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCC------CcHHH--------------HHHHHHHHHhc
Q 025670 60 IICINGP----INDDTAHVVVAQLLFLESENPSKPIHMYLNSPG------GQVTA--------------GLAIYDTMQYI 115 (249)
Q Consensus 60 iI~L~g~----Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPG------G~V~a--------------g~aIyd~i~~~ 115 (249)
+|.|+.+ ++.++...+.+.+..++ +..+ + |.|.+.| +++.. ...++..|..+
T Consensus 15 ~itln~~~~Nal~~~~~~~l~~~l~~~~--~~~~-v-vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~ 90 (229)
T PRK06213 15 TITLDDGKVNALSPAMIDALNAALDQAE--DDRA-V-VVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSH 90 (229)
T ss_pred EEEeCCCCCCCCCHHHHHHHHHHHHHhh--ccCc-E-EEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcC
Confidence 3555644 67778888888888776 2233 3 3344444 33321 12344556678
Q ss_pred CCCEEEEEccccchHHHHHHhcCCCCcEEeccC-ceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHH
Q 025670 116 RSPINTICLGQAASMGSLLLASGTKGERRALPN-STIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIE 194 (249)
Q Consensus 116 ~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~-s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~ 194 (249)
++||++.+.|.|..+|.-|+++|| .|++.++ ++|.+-....|.. +.... ...+.++.|. .
T Consensus 91 ~kPvIAav~G~a~GgG~~lal~~D--~rva~~~~a~f~~pe~~~Gl~--~~~~~-------------~~~l~~~~g~--~ 151 (229)
T PRK06213 91 PKPVIVACTGHAIAKGAFLLLSAD--YRIGVHGPFKIGLNEVAIGMT--MPHAA-------------IELARDRLTP--S 151 (229)
T ss_pred CCCEEEEEcCeeeHHHHHHHHhCC--eeeEecCCcEEECchhhhCCc--CChHH-------------HHHHHHHcCH--H
Confidence 999999999999999999999999 7999999 8887643332211 11100 0011122222 2
Q ss_pred HHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 195 VIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 195 ~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
...+++-....++|+||+++||||+|...+
T Consensus 152 ~a~~lll~g~~~~a~eA~~~Glv~~vv~~~ 181 (229)
T PRK06213 152 AFQRAVINAEMFDPEEAVAAGFLDEVVPPE 181 (229)
T ss_pred HHHHHHHcCcccCHHHHHHCCCceeccChH
Confidence 334445567789999999999999998754
No 87
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=98.52 E-value=2.4e-06 Score=76.69 Aligned_cols=145 Identities=15% Similarity=0.154 Sum_probs=91.9
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEE----eCCCCcHHHH-----------------HHHHHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYL----NSPGGQVTAG-----------------LAIYDTMQ 113 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~I----NSPGG~V~ag-----------------~aIyd~i~ 113 (249)
+|.|+.| ++.++...+.+.+..++.++..+.|+|.= =|.|+++... ..++..|.
T Consensus 24 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 103 (268)
T PRK07327 24 EIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVI 103 (268)
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHH
Confidence 3566654 67778888888888888655444444321 1333444211 12334456
Q ss_pred hcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCC-CchhhHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 025670 114 YIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYS-GQAKDMTIHTKQIVRVWDALNALYCKHTGQS 192 (249)
Q Consensus 114 ~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~-G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~ 192 (249)
.+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|.. +..... . +....|.
T Consensus 104 ~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~p~~g~~~------------~----l~~~vG~- 164 (268)
T PRK07327 104 NCDKPIVSAIHGPAVGAGLVAALLAD--ISIAAKDARIIDGHTRLGVAAGDHAAI------------V----WPLLCGM- 164 (268)
T ss_pred cCCCCEEEEEcCeeeehhhHHHHhCC--EEEecCCCEEeCcccccCCCCCcchhh------------H----HHHHhCH-
Confidence 77899999999999999999999999 79999999887533222221 110000 0 1111122
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 193 IEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 193 ~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
....+++-....|+|+||+++||||+|....
T Consensus 165 -~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 195 (268)
T PRK07327 165 -AKAKYYLLLCEPVSGEEAERIGLVSLAVDDD 195 (268)
T ss_pred -HHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence 2333344456678999999999999998754
No 88
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=98.51 E-value=3e-06 Score=75.79 Aligned_cols=140 Identities=14% Similarity=0.167 Sum_probs=90.4
Q ss_pred eCcchHHHHHHHHHHhhhcCCCCCeEEEEe-----CCCCcHHH----------------HHHHHHHHHhcCCCEEEEEcc
Q 025670 67 INDDTAHVVVAQLLFLESENPSKPIHMYLN-----SPGGQVTA----------------GLAIYDTMQYIRSPINTICLG 125 (249)
Q Consensus 67 Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN-----SPGG~V~a----------------g~aIyd~i~~~~~pV~tv~~G 125 (249)
++.++.+.+...+..++.++..+.|+|.=+ |.|+++.. ...+...|..+++||++.+.|
T Consensus 32 l~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 111 (262)
T PRK06144 32 MTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAG 111 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 567778888888888876544444443211 23444432 112344566789999999999
Q ss_pred ccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcc
Q 025670 126 QAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYF 205 (249)
Q Consensus 126 ~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~ 205 (249)
.|..+|.-++++|| .|++.+++.|.+-... ..|-...... . ..+.+..| .....+++-....
T Consensus 112 ~a~GgG~~lala~D--~~ia~~~a~f~~pe~~--~~G~~p~~g~----~--------~~l~~~vG--~~~a~~l~l~g~~ 173 (262)
T PRK06144 112 ACVGGGAAIAAACD--LRIATPSARFGFPIAR--TLGNCLSMSN----L--------ARLVALLG--AARVKDMLFTARL 173 (262)
T ss_pred eeeehHHHHHHhCC--EEEecCCCEeechhHH--hccCCCCccH----H--------HHHHHHhC--HHHHHHHHHcCCC
Confidence 99999999999999 7999999998653221 0111111100 0 01223333 2334455556678
Q ss_pred cCHHHHHHcCCcceecCCC
Q 025670 206 MTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 206 lsa~EA~e~GlID~I~~~~ 224 (249)
++++||+++||||+|+...
T Consensus 174 ~~a~eA~~~Glv~~vv~~~ 192 (262)
T PRK06144 174 LEAEEALAAGLVNEVVEDA 192 (262)
T ss_pred cCHHHHHHcCCcCeecCHH
Confidence 9999999999999999764
No 89
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=98.51 E-value=2.8e-06 Score=75.55 Aligned_cols=144 Identities=13% Similarity=0.131 Sum_probs=92.3
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEeCC------CCcHHHH---------------HH-HHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLNSP------GGQVTAG---------------LA-IYDTM 112 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSP------GG~V~ag---------------~a-Iyd~i 112 (249)
+|.|+-| ++.++.+.+...+..++.++..+- |.|-+. |+++... .. +...|
T Consensus 11 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrv--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (255)
T PRK06563 11 LIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRV--AVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVG 88 (255)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEE--EEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHH
Confidence 4566654 677788888888887776443332 333333 3444320 11 12236
Q ss_pred HhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 025670 113 QYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQS 192 (249)
Q Consensus 113 ~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~ 192 (249)
+.+++||++.+.|.|..+|..|+++|| .|++.+++.|.+.....|.. ...... . . +.+..|.
T Consensus 89 ~~~~kPvIAav~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~Gl~---p~~g~~----~----~----l~~~vG~- 150 (255)
T PRK06563 89 RRLSKPLVVAVQGYCLTLGIELMLAAD--IVVAADNTRFAQLEVQRGIL---PFGGAT----L----R----FPQAAGW- 150 (255)
T ss_pred hcCCCCEEEEEcCeeecHHHHHHHhCC--EEEecCCCEEeChhhhcCCC---CCccHH----H----H----HHHHhhH-
Confidence 678899999999999999999999999 79999999987755443321 110000 0 1 1112222
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 193 IEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 193 ~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
....+++-....|+++||+++||||+|....
T Consensus 151 -~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK06563 151 -GNAMRYLLTGDEFDAQEALRLGLVQEVVPPG 181 (255)
T ss_pred -HHHHHHHHcCCCcCHHHHHHcCCCcEeeCHH
Confidence 2233445456778999999999999998754
No 90
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=98.50 E-value=3.5e-06 Score=75.03 Aligned_cols=147 Identities=13% Similarity=0.097 Sum_probs=93.4
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe----CCCCcHHHHH-----HH--------HHHHHhcCC
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN----SPGGQVTAGL-----AI--------YDTMQYIRS 117 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN----SPGG~V~ag~-----aI--------yd~i~~~~~ 117 (249)
+|.|+-| ++.++...+...+..++.++..+.|+|.=+ |.|+++.... .. ...+..+++
T Consensus 15 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~k 94 (254)
T PRK08259 15 TVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSK 94 (254)
T ss_pred EEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCC
Confidence 4566654 677788889889988886554444444211 4455554311 00 111225689
Q ss_pred CEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHH
Q 025670 118 PINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQ 197 (249)
Q Consensus 118 pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~ 197 (249)
||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|. .....- . ..+.+..| .....
T Consensus 95 PvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl---~p~~g~----~--------~~l~~~iG--~~~a~ 155 (254)
T PRK08259 95 PVIAAVSGYAVAGGLELALWCD--LRVAEEDAVFGVFCRRWGV---PLIDGG----T--------VRLPRLIG--HSRAM 155 (254)
T ss_pred CEEEEECCEEEhHHHHHHHhCC--EEEecCCCEecCcccccCC---CCCccH----H--------HHHHHHhC--HHHHH
Confidence 9999999999999999999999 7999999988753332221 111000 0 00122223 23344
Q ss_pred hhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 198 KNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 198 ~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
+++-....|+++||+++||||+|+...+
T Consensus 156 ~lll~g~~~~a~eA~~~Glv~~vv~~~~ 183 (254)
T PRK08259 156 DLILTGRPVDADEALAIGLANRVVPKGQ 183 (254)
T ss_pred HHHHcCCccCHHHHHHcCCCCEeeChhH
Confidence 5555567899999999999999987653
No 91
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=98.49 E-value=4.4e-06 Score=74.31 Aligned_cols=146 Identities=16% Similarity=0.094 Sum_probs=93.5
Q ss_pred EEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEE----EeCCCCcHHHHH----------HHHHHH-HhcCCCEE
Q 025670 61 ICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMY----LNSPGGQVTAGL----------AIYDTM-QYIRSPIN 120 (249)
Q Consensus 61 I~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~----INSPGG~V~ag~----------aIyd~i-~~~~~pV~ 120 (249)
|.|+-| ++.++...+.+.+..++.++..+.|+|. .=|.|+++.... .+...+ ..+++||+
T Consensus 16 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvI 95 (254)
T PRK08252 16 ITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLI 95 (254)
T ss_pred EEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEE
Confidence 556544 6777888898899888765544444432 114455553310 111111 34679999
Q ss_pred EEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhh
Q 025670 121 TICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNM 200 (249)
Q Consensus 121 tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~ 200 (249)
+.+.|.|..+|.-|+++|| .|++.++++|.+-....|. ..+..- ...+.+..| .....+++
T Consensus 96 aav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl---~p~~g~------------~~~l~~~vg--~~~a~~l~ 156 (254)
T PRK08252 96 AAVEGYALAGGFELALACD--LIVAARDAKFGLPEVKRGL---VAAGGG------------LLRLPRRIP--YHIAMELA 156 (254)
T ss_pred EEECCEEehHHHHHHHhCC--EEEEeCCCEEeCchhhcCC---CCCchH------------HHHHHHHcC--HHHHHHHH
Confidence 9999999999999999999 7999999988653322221 111110 011222233 34445555
Q ss_pred cCCcccCHHHHHHcCCcceecCCCc
Q 025670 201 DRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 201 ~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
-....++++||+++||||+|+...+
T Consensus 157 l~g~~~~a~eA~~~Glv~~vv~~~~ 181 (254)
T PRK08252 157 LTGDMLTAERAHELGLVNRLTEPGQ 181 (254)
T ss_pred HcCCccCHHHHHHcCCcceecCcch
Confidence 5567899999999999999997543
No 92
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=98.49 E-value=3.9e-06 Score=74.42 Aligned_cols=141 Identities=15% Similarity=0.139 Sum_probs=90.4
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEE----eCCCCcHHHH------------HHHHHHHHhcCCC
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYL----NSPGGQVTAG------------LAIYDTMQYIRSP 118 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~I----NSPGG~V~ag------------~aIyd~i~~~~~p 118 (249)
+|.|+-| ++.++.+.+.+.+..++.++..+-|+|.= =|.|+++..- ..++..|..+++|
T Consensus 12 ~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kP 91 (248)
T PRK06072 12 IVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKI 91 (248)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCC
Confidence 4666654 77778888988888888655444343321 1445555321 1244556778899
Q ss_pred EEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHh
Q 025670 119 INTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQK 198 (249)
Q Consensus 119 V~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~ 198 (249)
|++.+.|.|..+|.-++++|| .|++.++++|.+..+..|.. .+.... ..+.+..|. ...+
T Consensus 92 vIaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~~~~~~Gl~---p~~g~~------------~~l~~~~g~---~a~~ 151 (248)
T PRK06072 92 YISAINGVTAGACIGIALSTD--FKFASRDVKFVTAFQRLGLA---SDTGVA------------YFLLKLTGQ---RFYE 151 (248)
T ss_pred EEEEECCeeehHHHHHHHhCC--EEEEcCCCEEecchhhcCcC---CCchHH------------HHHHHHhhH---HHHH
Confidence 999999999999999999999 79999999987654433321 111100 001111231 1223
Q ss_pred hhcCCcccCHHHHHHcCCccee
Q 025670 199 NMDRDYFMTPEEAKEFGIIDEV 220 (249)
Q Consensus 199 ~~~~d~~lsa~EA~e~GlID~I 220 (249)
++-....|+|+||+++||||.+
T Consensus 152 lll~g~~~~a~eA~~~Glv~~~ 173 (248)
T PRK06072 152 ILVLGGEFTAEEAERWGLLKIS 173 (248)
T ss_pred HHHhCCccCHHHHHHCCCcccc
Confidence 3333456899999999999964
No 93
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=98.49 E-value=1.6e-06 Score=77.43 Aligned_cols=146 Identities=14% Similarity=0.137 Sum_probs=94.3
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEE----eCCCCcHHHH-------------------HHHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYL----NSPGGQVTAG-------------------LAIYDT 111 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~I----NSPGG~V~ag-------------------~aIyd~ 111 (249)
+|.|+-| ++.++...+.+.+..++ ++..+.|+|.= =|.|+++... ..++..
T Consensus 16 ~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (262)
T PRK08140 16 TLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRR 94 (262)
T ss_pred EEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHH
Confidence 4566644 67778888888888887 55555444421 1334444321 113456
Q ss_pred HHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCC
Q 025670 112 MQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQ 191 (249)
Q Consensus 112 i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~ 191 (249)
|..+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....| -.....-. . . +.+..|
T Consensus 95 l~~~~kPvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G---~~p~~g~~----~----~----l~~~vG- 156 (262)
T PRK08140 95 LRALPLPVIAAVNGVAAGAGANLALACD--IVLAARSASFIQAFVKIG---LVPDSGGT----W----F----LPRLVG- 156 (262)
T ss_pred HHhCCCCEEEEECCeeehhHHHHHHhCC--EEEecCCCEEeccccccC---CCCCccHH----H----H----HHHHhC-
Confidence 7778999999999999999999999999 799999999875332222 11111000 0 0 111122
Q ss_pred CHHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 192 SIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 192 ~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
.....+++-....++++||+++||||+|....+
T Consensus 157 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 189 (262)
T PRK08140 157 -MARALGLALLGEKLSAEQAEQWGLIWRVVDDAA 189 (262)
T ss_pred -HHHHHHHHHcCCCcCHHHHHHcCCccEeeChHH
Confidence 233344555567789999999999999997543
No 94
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.49 E-value=1.6e-06 Score=78.69 Aligned_cols=95 Identities=14% Similarity=0.080 Sum_probs=67.1
Q ss_pred HHHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 025670 109 YDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKH 188 (249)
Q Consensus 109 yd~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~ 188 (249)
+..|+.+++||++.+.|.|..+|.-|+++|| .|++.+++.|.+-....|..| ... .. + ...
T Consensus 111 ~~~l~~~pkPvIAaVnG~a~GgG~~lalacD--~ria~e~a~f~~pe~~lGl~~----~~~---~~--l--------~~~ 171 (288)
T PRK08290 111 CRRWRDLPKPTIAQVQGACIAGGLMLAWVCD--LIVASDDAFFSDPVVRMGIPG----VEY---FA--H--------PWE 171 (288)
T ss_pred HHHHHhCCCCEEEEECCEeeHHHHHHHHhCC--EEEeeCCCEecCcccccCcCc----chH---HH--H--------HHH
Confidence 3456778999999999999999999999999 799999999875333333322 100 00 0 011
Q ss_pred hCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 189 TGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 189 tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
.| .....+++-....++|+||+++||||+|+...
T Consensus 172 iG--~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~ 205 (288)
T PRK08290 172 LG--PRKAKELLFTGDRLTADEAHRLGMVNRVVPRD 205 (288)
T ss_pred hh--HHHHHHHHHcCCCCCHHHHHHCCCccEeeCHH
Confidence 22 23344455556789999999999999999754
No 95
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.48 E-value=3.2e-06 Score=77.69 Aligned_cols=137 Identities=22% Similarity=0.310 Sum_probs=94.1
Q ss_pred cCcEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHH-------HHHHHHHHH---hcCCCEEEEEccc
Q 025670 57 KERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTA-------GLAIYDTMQ---YIRSPINTICLGQ 126 (249)
Q Consensus 57 ~~riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~a-------g~aIyd~i~---~~~~pV~tv~~G~ 126 (249)
++++-...|.++++-+......+...+.- .-||+.++||||..+.. +.+|...+. ....|+++++.|-
T Consensus 122 ~e~~~~~~G~~~p~g~rKa~R~m~lA~~f--~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGe 199 (316)
T TIGR00513 122 KEKLRRNFGMPAPEGYRKALRLMKMAERF--KMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGE 199 (316)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecc
Confidence 45555666778887777776666554432 47999999999987321 345555554 5579999999999
Q ss_pred cchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCccc
Q 025670 127 AASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFM 206 (249)
Q Consensus 127 AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~l 206 (249)
|+|+|++.+..++ .++|.|++.+.+-.|.+.. .+ + +++. ...++..+ -.-+
T Consensus 200 ggsGGAla~~~aD--~v~m~~~a~~sVisPEg~a-----~I------l--~kd~----------~~a~~aae----~~~~ 250 (316)
T TIGR00513 200 GGSGGALAIGVGD--KVNMLEYSTYSVISPEGCA-----AI------L--WKDA----------SKAPKAAE----AMKI 250 (316)
T ss_pred cccHHHhhhccCC--EEEEecCceEEecCHHHHH-----HH------h--ccch----------hhHHHHHH----HccC
Confidence 9999999887787 7999999999987775320 00 0 0000 00122222 1445
Q ss_pred CHHHHHHcCCcceecCCC
Q 025670 207 TPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 207 sa~EA~e~GlID~I~~~~ 224 (249)
|+.++.+.|+||+|+...
T Consensus 251 ta~~l~~~G~iD~II~ep 268 (316)
T TIGR00513 251 TAPDLKELGLIDSIIPEP 268 (316)
T ss_pred CHHHHHHCCCCeEeccCC
Confidence 899999999999999864
No 96
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=98.48 E-value=4.5e-06 Score=74.33 Aligned_cols=146 Identities=17% Similarity=0.184 Sum_probs=93.5
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe----CCCCcHHH-------------HHHHHHHHHhcCC
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN----SPGGQVTA-------------GLAIYDTMQYIRS 117 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN----SPGG~V~a-------------g~aIyd~i~~~~~ 117 (249)
+|.|+-| ++.++...+.+.+..++.++..+.|+|.=+ |-|+++.. ...++..|..+++
T Consensus 16 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~k 95 (257)
T PRK05862 16 LITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRK 95 (257)
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCC
Confidence 3566644 667788888888888876554444444311 22344321 1223456778899
Q ss_pred CEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHH
Q 025670 118 PINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQ 197 (249)
Q Consensus 118 pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~ 197 (249)
||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|. ..+..-. ..+.+..|. ....
T Consensus 96 pvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl---~p~~g~~------------~~l~~~vG~--~~a~ 156 (257)
T PRK05862 96 PVIAAVAGYALGGGCELAMMCD--IIIAADTAKFGQPEIKLGV---LPGMGGS------------QRLTRAVGK--AKAM 156 (257)
T ss_pred CEEEEEccEEeHHHHHHHHHCC--EEEEeCCCEEeCchhccCc---CCCccHH------------HHHHHHhCH--HHHH
Confidence 9999999999999999999999 7999999988753322221 1111100 012222332 2234
Q ss_pred hhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 198 KNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 198 ~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
+++-....++++||+++||||+|+...
T Consensus 157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~ 183 (257)
T PRK05862 157 DLCLTGRMMDAAEAERAGLVSRVVPAD 183 (257)
T ss_pred HHHHhCCccCHHHHHHcCCCCEeeCHh
Confidence 444456689999999999999998754
No 97
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.47 E-value=5e-06 Score=75.66 Aligned_cols=140 Identities=13% Similarity=0.082 Sum_probs=88.2
Q ss_pred eCcchHHHHHHHHHHhhh-----cCCCCCeEEEEe-----CCCCcHHHH----------------HHHHHHHH------h
Q 025670 67 INDDTAHVVVAQLLFLES-----ENPSKPIHMYLN-----SPGGQVTAG----------------LAIYDTMQ------Y 114 (249)
Q Consensus 67 Id~~~a~~i~a~L~~l~~-----~~~~~~I~l~IN-----SPGG~V~ag----------------~aIyd~i~------~ 114 (249)
++.++...+...+..++. ++..+.|+|.=+ |.|+++... ..+++.+. .
T Consensus 40 l~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (287)
T PRK08788 40 FNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFG 119 (287)
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcC
Confidence 666778888888888875 333333333211 334444321 12233333 4
Q ss_pred cCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHH
Q 025670 115 IRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIE 194 (249)
Q Consensus 115 ~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~ 194 (249)
+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|. ..+..- ...+.+..| ..
T Consensus 120 ~pkPvIAaV~G~a~GgG~~LalacD--~ria~~~a~f~~pev~lGl---~p~~g~------------~~~l~~~vG--~~ 180 (287)
T PRK08788 120 AGAISIALVQGDALGGGFEAALSHH--TIIAERGAKMGFPEILFNL---FPGMGA------------YSFLARRVG--PK 180 (287)
T ss_pred CCCCEEEEECCeeehHHHHHHHhCC--EEEecCCCEeeCchhhhCc---CCCchH------------HHHHHHHhh--HH
Confidence 6899999999999999999999999 7999999988753322221 111110 011223333 23
Q ss_pred HHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 195 VIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 195 ~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
...+++-.+..|+++||+++||||++.+..+
T Consensus 181 ~A~ellltG~~l~A~eA~~~GLV~~vv~~~e 211 (287)
T PRK08788 181 LAEELILSGKLYTAEELHDMGLVDVLVEDGQ 211 (287)
T ss_pred HHHHHHHcCCCCCHHHHHHCCCCcEecCchH
Confidence 4455555667899999999999999987643
No 98
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=98.46 E-value=5e-06 Score=74.93 Aligned_cols=147 Identities=13% Similarity=0.123 Sum_probs=94.6
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEE----eCCCCcHHHH-------------------HHHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYL----NSPGGQVTAG-------------------LAIYDT 111 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~I----NSPGG~V~ag-------------------~aIyd~ 111 (249)
+|.|+-| ++.++...+...+..++.++..+.|+|.= =|-|+++... ..++..
T Consensus 20 ~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (275)
T PRK09120 20 WVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRR 99 (275)
T ss_pred EEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHH
Confidence 3555544 77788888888888887655444444421 1233444321 123455
Q ss_pred HHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCC
Q 025670 112 MQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQ 191 (249)
Q Consensus 112 i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~ 191 (249)
|..+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|. ..+... ...+.+..|
T Consensus 100 l~~~~kPvIAav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~Gl---~p~~g~------------~~~l~~~iG- 161 (275)
T PRK09120 100 LRWYQKPTIAMVNGWCFGGGFSPLVACD--LAIAADEAQFGLSEINWGI---PPGGGV------------SKAMADTVG- 161 (275)
T ss_pred HHhCCCCEEEEEcCEEechhHHHHHhCC--EEEEeCCcEecCCccccCC---CCCcch------------HHHHHHHcC-
Confidence 6778999999999999999999999999 7999999998763322221 111100 011122233
Q ss_pred CHHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 192 SIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 192 ~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
.....+++-....|+|+||+++||||+|+...+
T Consensus 162 -~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~ 194 (275)
T PRK09120 162 -HRDALYYIMTGETFTGRKAAEMGLVNESVPLAQ 194 (275)
T ss_pred -HHHHHHHHhcCCccCHHHHHHcCCcceecCHHH
Confidence 233444554567789999999999999987543
No 99
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.45 E-value=2.5e-06 Score=78.56 Aligned_cols=137 Identities=21% Similarity=0.274 Sum_probs=94.7
Q ss_pred cCcEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHH-------HHHHHHHHH---HhcCCCEEEEEccc
Q 025670 57 KERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVT-------AGLAIYDTM---QYIRSPINTICLGQ 126 (249)
Q Consensus 57 ~~riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~-------ag~aIyd~i---~~~~~pV~tv~~G~ 126 (249)
++++-...|..+++-+......+...+.- .-||+-+|||||..+. .+.+|...+ ...+.|+.+++.|-
T Consensus 125 ~e~~~~~~G~~~p~g~rKa~Rlm~lA~~f--~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGe 202 (322)
T CHL00198 125 KENVLRNFGMPSPGGYRKALRLMKHANKF--GLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGE 202 (322)
T ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCc
Confidence 44444556777777777776665554432 4799999999998642 234565544 45679999999999
Q ss_pred cchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCccc
Q 025670 127 AASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFM 206 (249)
Q Consensus 127 AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~l 206 (249)
|.|+|++.+..++ .++|.++|.+.+-.|.+. ..++= .+.+...+ ...-.-+
T Consensus 203 ggsGGAlal~~aD--~V~m~e~a~~sVisPEg~----------------------a~Il~----~d~~~a~~-aA~~~~i 253 (322)
T CHL00198 203 GGSGGALGIGIGD--SIMMLEYAVYTVATPEAC----------------------AAILW----KDSKKSLD-AAEALKI 253 (322)
T ss_pred ccHHHHHhhhcCC--eEEEeCCeEEEecCHHHH----------------------HHHHh----cchhhHHH-HHHHcCC
Confidence 9999999888887 799999999998777432 01110 01122222 2223457
Q ss_pred CHHHHHHcCCcceecCCC
Q 025670 207 TPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 207 sa~EA~e~GlID~I~~~~ 224 (249)
||++.+++|+||+|+...
T Consensus 254 ta~dL~~~giiD~ii~Ep 271 (322)
T CHL00198 254 TSEDLKVLGIIDEIIPEP 271 (322)
T ss_pred CHHHHHhCCCCeEeccCC
Confidence 999999999999999854
No 100
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=98.45 E-value=5.8e-06 Score=73.84 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=95.0
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe----CCCCcHHHHH----------------HH--HHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN----SPGGQVTAGL----------------AI--YDTM 112 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN----SPGG~V~ag~----------------aI--yd~i 112 (249)
+|+|+-| ++.++...+.+.+..++.++..+.|+|.=+ |.|+++.... .+ ...+
T Consensus 17 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (263)
T PRK07799 17 IVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKG 96 (263)
T ss_pred EEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHH
Confidence 4666655 777788999999998887655544433211 3345543210 01 1113
Q ss_pred HhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 025670 113 QYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQS 192 (249)
Q Consensus 113 ~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~ 192 (249)
+.+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|.. .+... ...+.+..|
T Consensus 97 ~~~~kpvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~r~vG-- 157 (263)
T PRK07799 97 RRLTKPLIAAVEGPAIAGGTEILQGTD--IRVAGESAKFGISEAKWSLF---PMGGS------------AVRLVRQIP-- 157 (263)
T ss_pred hcCCCCEEEEECCeEeccHHHHHHhCC--EEEecCCCEecCcccccCcC---CCccH------------HHHHHHHhC--
Confidence 467899999999999999999999999 79999999987644333321 11100 001122222
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 193 IEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 193 ~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
.....+++-....|+++||+++||||+|++..+
T Consensus 158 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 190 (263)
T PRK07799 158 YTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQ 190 (263)
T ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEecCcch
Confidence 334455555567899999999999999997653
No 101
>PRK08321 naphthoate synthase; Validated
Probab=98.44 E-value=6.8e-06 Score=75.10 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=98.5
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEE-----------EeCCCCcHHHH------------------
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMY-----------LNSPGGQVTAG------------------ 105 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~-----------INSPGG~V~ag------------------ 105 (249)
+|.|+-| ++.++...+...+..++.++..+-|+|. .=|.|+++...
T Consensus 37 ~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 116 (302)
T PRK08321 37 RIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDP 116 (302)
T ss_pred EEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhh
Confidence 5677766 7778888999999988876655555553 23667765420
Q ss_pred -----H---HHHHHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEec-cCceEeeecCCCCCCCchhhHHHHHHHHHH
Q 025670 106 -----L---AIYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRAL-PNSTIMIHQPSGGYSGQAKDMTIHTKQIVR 176 (249)
Q Consensus 106 -----~---aIyd~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~-p~s~imiHqp~~~~~G~~~di~~~a~~l~~ 176 (249)
. .+.+.|..+++||++.+.|.|..+|.-|+++|| .|++. ++++|.+-....|.. ....-
T Consensus 117 ~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD--~ria~~~~a~f~~pe~~~Gl~---p~~~~------- 184 (302)
T PRK08321 117 ARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCD--LTLASREHARFKQTDADVGSF---DGGYG------- 184 (302)
T ss_pred hHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCC--EEEEecCCCEEECCccccccC---CCchH-------
Confidence 0 134456778999999999999999999999999 79998 689887533322211 00000
Q ss_pred HHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 177 VWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 177 ~~~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
...+.+..| .....+++-....|+|+||+++||||+|++..
T Consensus 185 -----~~~L~r~vG--~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~ 225 (302)
T PRK08321 185 -----SAYLARQVG--QKFAREIFFLGRTYSAEEAHDMGAVNAVVPHA 225 (302)
T ss_pred -----HHHHHHHhC--HHHHHHHHHcCCccCHHHHHHCCCceEeeCHH
Confidence 001222333 23344555556789999999999999999754
No 102
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=98.43 E-value=3.8e-06 Score=75.28 Aligned_cols=138 Identities=12% Similarity=0.129 Sum_probs=90.0
Q ss_pred eCcchHHHHHHHHHHhhhcCCCCCeEEEEe----CCCCcHHHH------------------HHHHHHHHhcCCCEEEEEc
Q 025670 67 INDDTAHVVVAQLLFLESENPSKPIHMYLN----SPGGQVTAG------------------LAIYDTMQYIRSPINTICL 124 (249)
Q Consensus 67 Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN----SPGG~V~ag------------------~aIyd~i~~~~~pV~tv~~ 124 (249)
++.++...+.+.+..++.++..+.|+|.=+ |.|+++... ..+...|+.+++||++.+.
T Consensus 30 l~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~ 109 (265)
T PRK05674 30 FNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQ 109 (265)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 677778888888888876554454444211 344544310 1234456678899999999
Q ss_pred cccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCc
Q 025670 125 GQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDY 204 (249)
Q Consensus 125 G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~ 204 (249)
|.|..+|.-|+++|| .|++.+++.|.+-....|. ..+... ..+.+..|. ....+++-...
T Consensus 110 G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gi---~p~~~~-------------~~l~~~vG~--~~a~~l~ltg~ 169 (265)
T PRK05674 110 GAAFGGALGLISCCD--MAIGADDAQFCLSEVRIGL---APAVIS-------------PFVVKAIGE--RAARRYALTAE 169 (265)
T ss_pred CEEEechhhHhhhcC--EEEEeCCCEEeCcccccCC---CcchhH-------------HHHHHHhCH--HHHHHHHHhCc
Confidence 999999999999999 7999999988763322222 112110 012222332 33344444566
Q ss_pred ccCHHHHHHcCCcceecCCC
Q 025670 205 FMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 205 ~lsa~EA~e~GlID~I~~~~ 224 (249)
.|+++||+++||||+|....
T Consensus 170 ~~~a~eA~~~Glv~~vv~~~ 189 (265)
T PRK05674 170 RFDGRRARELGLLAESYPAA 189 (265)
T ss_pred ccCHHHHHHCCCcceecCHH
Confidence 78999999999999998753
No 103
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=98.42 E-value=5.2e-06 Score=75.73 Aligned_cols=143 Identities=15% Similarity=0.114 Sum_probs=95.2
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe----CCCCcHHHH-------------------------
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN----SPGGQVTAG------------------------- 105 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN----SPGG~V~ag------------------------- 105 (249)
+|.|+.| ++.++...+.+.+..++.++..+-|+|.=+ |-|+++.+.
T Consensus 22 ~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (302)
T PRK08272 22 RITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPD 101 (302)
T ss_pred EEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccccccccccccccccccccc
Confidence 4667665 777888889888888876554443333211 334444321
Q ss_pred ---------------HHHHHHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHH
Q 025670 106 ---------------LAIYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIH 170 (249)
Q Consensus 106 ---------------~aIyd~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~ 170 (249)
..++..|..+++||++.+.|.|..+|.-|+++|| .|++.+++.|.+=.... .|-+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD--~~ias~~a~f~~pe~~~--gg~~~~---- 173 (302)
T PRK08272 102 DPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCD--QVIAADDAKIGYPPTRV--WGVPAT---- 173 (302)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCC--EEEEeCCCEecCcchhc--ccCChH----
Confidence 1234556778999999999999999999999999 79999999886532221 121110
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 171 TKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 171 a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
. . +....| .....+++-....|+|+||+++||||+|+...
T Consensus 174 -~-------~----~~~~vG--~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~ 213 (302)
T PRK08272 174 -G-------M----WAYRLG--PQRAKRLLFTGDCITGAQAAEWGLAVEAVPPE 213 (302)
T ss_pred -H-------H----HHHHhh--HHHHHHHHHcCCccCHHHHHHcCCCceecCHH
Confidence 0 0 111223 34445555567789999999999999998754
No 104
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.41 E-value=4.9e-06 Score=83.20 Aligned_cols=137 Identities=20% Similarity=0.334 Sum_probs=96.7
Q ss_pred cCcEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHH-------HHHHHHHHHH---hcCCCEEEEEccc
Q 025670 57 KERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVT-------AGLAIYDTMQ---YIRSPINTICLGQ 126 (249)
Q Consensus 57 ~~riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~-------ag~aIyd~i~---~~~~pV~tv~~G~ 126 (249)
++|+-+..|.+++.-+......+..++.- .-||+.+|||||..+. .+.+|...+. ....|+++++.|-
T Consensus 213 ke~~~rnfG~~~peGyRKAlRlmkLAekf--gLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGe 290 (762)
T PLN03229 213 KENIMRNFGMPTPHGYRKALRMMYYADHH--GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGE 290 (762)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 56677778888888777776666555432 4799999999998751 2445655555 5569999999999
Q ss_pred cchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCccc
Q 025670 127 AASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFM 206 (249)
Q Consensus 127 AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~l 206 (249)
|+|+|++.+..++ .++|.|++.+.+-.|.+. ..++- +......+. ..-.-+
T Consensus 291 ggSGGAlA~g~aD--~VlMle~A~~sVisPEga----------------------AsILw-kd~~~A~eA----Ae~lki 341 (762)
T PLN03229 291 GGSGGALAIGCAN--KLLMLENAVFYVASPEAC----------------------AAILW-KSAKAAPKA----AEKLRI 341 (762)
T ss_pred cchHHHHHhhcCC--EEEEecCCeEEecCHHHH----------------------HHHHh-cCcccHHHH----HHHcCC
Confidence 9999999999888 799999999887665421 11110 111111122 223457
Q ss_pred CHHHHHHcCCcceecCCC
Q 025670 207 TPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 207 sa~EA~e~GlID~I~~~~ 224 (249)
||++-+++|+||+|+...
T Consensus 342 Ta~dL~~lGiiD~IIpEp 359 (762)
T PLN03229 342 TAQELCRLQIADGIIPEP 359 (762)
T ss_pred CHHHHHhCCCCeeeccCC
Confidence 999999999999999754
No 105
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=98.40 E-value=3.8e-06 Score=74.51 Aligned_cols=140 Identities=17% Similarity=0.172 Sum_probs=91.5
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEeCC------CCcHHHH---------------HHHHHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLNSP------GGQVTAG---------------LAIYDTMQ 113 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSP------GG~V~ag---------------~aIyd~i~ 113 (249)
+|.|+-| ++.++...+...+..++.++..+.|+| .+. |+++... ...+..|.
T Consensus 15 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (249)
T PRK05870 15 LITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVV--TGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVA 92 (249)
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEE--ECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHH
Confidence 3555544 667788888888888876544443333 343 3444321 12234466
Q ss_pred hcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCC-CchhhHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 025670 114 YIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYS-GQAKDMTIHTKQIVRVWDALNALYCKHTGQS 192 (249)
Q Consensus 114 ~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~-G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~ 192 (249)
.+++||++.+.|.|..+|.-|+++|| .|++.++++|.+.....|.. +-..- ..+.+..|
T Consensus 93 ~~~kPvIaav~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~G~~p~~g~~----------------~~l~~~~G-- 152 (249)
T PRK05870 93 SCPLPTIAAVNGAAVGAGLNLALAAD--VRIAGPKALFDARFQKLGLHPGGGAT----------------WMLQRAVG-- 152 (249)
T ss_pred hCCCCEEEEECCEeEchhHHHHHhCC--EEEEcCCCEEeCcccccCcCCCCcce----------------eeHHhhhC--
Confidence 78999999999999999999999999 79999999987654433311 10000 00122222
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCcceec
Q 025670 193 IEVIQKNMDRDYFMTPEEAKEFGIIDEVI 221 (249)
Q Consensus 193 ~~~i~~~~~~d~~lsa~EA~e~GlID~I~ 221 (249)
.....+++-....++++||+++||||+|.
T Consensus 153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 181 (249)
T PRK05870 153 PQVARAALLFGMRFDAEAAVRHGLALMVA 181 (249)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCHHHHH
Confidence 23344455456789999999999999998
No 106
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.40 E-value=7.3e-06 Score=73.01 Aligned_cols=143 Identities=13% Similarity=0.066 Sum_probs=92.8
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEE----eCCCCcHHHH-----------------HHHHHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYL----NSPGGQVTAG-----------------LAIYDTMQ 113 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~I----NSPGG~V~ag-----------------~aIyd~i~ 113 (249)
+|.|+.| ++.++...+.+.+..++. ..+.|+|.= =|.|+++... ..++..|.
T Consensus 16 ~itlnrp~~~Nal~~~~~~~L~~~l~~~~~--~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (255)
T PRK07112 16 FLQLHRPEAQNTINDRLIAECMDVLDRCEH--AATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLA 93 (255)
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHhhc--CceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHH
Confidence 3566655 677788888888887762 233333321 1344544320 12344566
Q ss_pred hcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCH
Q 025670 114 YIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSI 193 (249)
Q Consensus 114 ~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~ 193 (249)
.+++||++.|.|.|..+|..|+++|| .|++.++++|.+.....|.. .... . ..+.+..| .
T Consensus 94 ~~~kPvIaav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~~~Gl~---p~~~--------~-----~~l~~~vg--~ 153 (255)
T PRK07112 94 TGPYVTIAHVRGKVNAGGIGFVAASD--IVIADETAPFSLSELLFGLI---PACV--------L-----PFLIRRIG--T 153 (255)
T ss_pred cCCCCEEEEEecEEEcchhHHHHcCC--EEEEcCCCEEeCchhhhccC---cchh--------h-----HHHHHHhC--H
Confidence 78899999999999999999999999 79999999998755443321 1110 0 01222333 2
Q ss_pred HHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 194 EVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 194 ~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
....+++-....++++||+++||||+|....
T Consensus 154 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 184 (255)
T PRK07112 154 QKAHYMTLMTQPVTAQQAFSWGLVDAYGANS 184 (255)
T ss_pred HHHHHHHHhCCcccHHHHHHcCCCceecCcH
Confidence 3334455456678999999999999998754
No 107
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=98.38 E-value=1.7e-05 Score=70.08 Aligned_cols=145 Identities=19% Similarity=0.211 Sum_probs=92.1
Q ss_pred EEEEcce----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe-----CCCCcHHH-----------------HHHHHHHHH
Q 025670 60 IICINGP----INDDTAHVVVAQLLFLESENPSKPIHMYLN-----SPGGQVTA-----------------GLAIYDTMQ 113 (249)
Q Consensus 60 iI~L~g~----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN-----SPGG~V~a-----------------g~aIyd~i~ 113 (249)
+|.|+.+ ++.++...+...+..++.++....++|.=. |.|+++.. ...++..|.
T Consensus 12 ~i~Lnrp~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (239)
T PLN02267 12 ILTLTGDGEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLI 91 (239)
T ss_pred EEEeCCCCcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHh
Confidence 4556655 777888888888888876443333333322 33455421 111344566
Q ss_pred hcCCCEEEEEccccchHHHHHHhcCCCCcEEecc-CceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 025670 114 YIRSPINTICLGQAASMGSLLLASGTKGERRALP-NSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQS 192 (249)
Q Consensus 114 ~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p-~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~ 192 (249)
.+++||++.+.|.|..+|..|+++|| .|++.+ .++|.+-....|.. ..... ...+....|..
T Consensus 92 ~~~kPvIAaV~G~a~GgG~~lalacD--~ria~~~~a~f~~pe~~~Gl~--~p~~~-------------~~~l~~~vG~~ 154 (239)
T PLN02267 92 SLPMPTIAAVTGHASAAGFILALSHD--YVLMRKDRGVLYMSEVDIGLP--LPDYF-------------MALLRAKIGSP 154 (239)
T ss_pred cCCCCEEEEECCcchHHHHHHHHHCC--EEEecCCCCeEeccccccCCC--CChHH-------------HHHHHHHcChH
Confidence 77899999999999999999999999 799975 46776533333221 01110 11123334432
Q ss_pred HHHH-HhhhcCCcccCHHHHHHcCCcceecCC
Q 025670 193 IEVI-QKNMDRDYFMTPEEAKEFGIIDEVIDQ 223 (249)
Q Consensus 193 ~~~i-~~~~~~d~~lsa~EA~e~GlID~I~~~ 223 (249)
.. .+++-....|+++||+++||||+|...
T Consensus 155 --~a~~~llltG~~~~a~eA~~~Glv~~vv~~ 184 (239)
T PLN02267 155 --AARRDVLLRAAKLTAEEAVEMGIVDSAHDS 184 (239)
T ss_pred --HHHHHHHHcCCcCCHHHHHHCCCcceecCC
Confidence 23 245555778999999999999999974
No 108
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.38 E-value=8.7e-06 Score=77.47 Aligned_cols=188 Identities=15% Similarity=0.078 Sum_probs=116.0
Q ss_pred hhhcCCchhhhhhccCCCCCceeeccCCCCcccchhhhhccCcEEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCe
Q 025670 17 FLQLSKPSAQISARSFSLIPMVIEHSSRGERAYDIFSRLLKERIICINGP-----INDDTAHVVVAQLLFLESENPSKPI 91 (249)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~di~~~l~~~riI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I 91 (249)
-||.-++-+-...+.|..+|.-.+.....+. + ++..--.-++|+|+-| ++.++...+...|..++.++..+.|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v-~~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvV 90 (407)
T PLN02851 13 PLQWVRFGSVSYGRSFSALPNYAANDDLQDQ-V-LVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFV 90 (407)
T ss_pred hccceeeeeecCCcccccCCcccccCCCCCC-e-EEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEE
Confidence 4666676665566777777765543321111 1 1122123458888887 7888999999999988876655433
Q ss_pred EEEEe----CCCCcHHHH------------H----HHH---HHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccC
Q 025670 92 HMYLN----SPGGQVTAG------------L----AIY---DTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPN 148 (249)
Q Consensus 92 ~l~IN----SPGG~V~ag------------~----aIy---d~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~ 148 (249)
+|.=+ |-||++.+. . ..| ..|..+++||++.+.|.|..+|.-|+++|+ .|++.++
T Consensus 91 VL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D--~rVate~ 168 (407)
T PLN02851 91 LMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGM--FRVVTDK 168 (407)
T ss_pred EEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCC--EEEEeCC
Confidence 33211 345665321 1 122 234567899999999999999999999999 7999999
Q ss_pred ceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCcc
Q 025670 149 STIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRPM 226 (249)
Q Consensus 149 s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~~ 226 (249)
++|.+=....|.. .++.-. -.+.++ .|.. -..++-.+..++++||+++||+|+++.+...
T Consensus 169 a~famPE~~iGl~---PdvG~s-~~L~rl-----------~g~~---g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l 228 (407)
T PLN02851 169 TVFAHPEVQMGFH---PDAGAS-YYLSRL-----------PGYL---GEYLALTGQKLNGVEMIACGLATHYCLNARL 228 (407)
T ss_pred ceEecchhccCCC---CCccHH-HHHHHh-----------cCHH---HHHHHHhCCcCCHHHHHHCCCceeecCHhhH
Confidence 8887644433321 121100 001111 1110 1123334678899999999999999987653
No 109
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=98.37 E-value=4.1e-06 Score=76.45 Aligned_cols=142 Identities=15% Similarity=0.058 Sum_probs=95.9
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe----CCCCcHHH-------------------H------
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN----SPGGQVTA-------------------G------ 105 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN----SPGG~V~a-------------------g------ 105 (249)
+|.|+-| ++.++...+.+.+..++.++..+-|+|.=+ |-|+++.. .
T Consensus 17 ~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (298)
T PRK12478 17 TITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTA 96 (298)
T ss_pred EEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccCchhhhhhhhh
Confidence 4667655 677888888888888876554444443211 23344321 0
Q ss_pred -----HHHHHHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCC-CCCCchhhHHHHHHHHHHHHH
Q 025670 106 -----LAIYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSG-GYSGQAKDMTIHTKQIVRVWD 179 (249)
Q Consensus 106 -----~aIyd~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~-~~~G~~~di~~~a~~l~~~~~ 179 (249)
...+..|..+++||++.+.|.|..+|.-|+++|| -|++.++++|.+-.... |... .. -
T Consensus 97 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD--~ria~~~A~f~~pe~~l~G~~~--~~-----~------- 160 (298)
T PRK12478 97 RETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCAD--IVIASDDAVIGTPYSRMWGAYL--TG-----M------- 160 (298)
T ss_pred hhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCC--EEEEcCCcEEeccccccccCCc--hh-----H-------
Confidence 0134457778999999999999999999999999 79999999998754432 3221 00 0
Q ss_pred HHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 180 ALNALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 180 ~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
+..+. ......+++-....|+|+||+++||||+|+...
T Consensus 161 -----~~~~v--G~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~ 198 (298)
T PRK12478 161 -----WLYRL--SLAKVKWHSLTGRPLTGVQAAEAELINEAVPFE 198 (298)
T ss_pred -----HHHHh--hHHHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence 00112 334455666667889999999999999999754
No 110
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=98.36 E-value=6.9e-06 Score=73.30 Aligned_cols=140 Identities=19% Similarity=0.182 Sum_probs=91.4
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCC------CcHHHH----------------HHHHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLNSPG------GQVTAG----------------LAIYDTM 112 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPG------G~V~ag----------------~aIyd~i 112 (249)
+|.|+-| ++.++...+...+..++ ++..+- |.|.+.| +++... ..++..|
T Consensus 18 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~-d~~vrv--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (260)
T PRK07659 18 TIMLNRPEALNALDEPMLKELLQALKEVA-ESSAHI--VVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTL 94 (260)
T ss_pred EEEeCCcccccCCCHHHHHHHHHHHHHhc-CCCeeE--EEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHH
Confidence 3556554 67778888888888873 333332 3334444 444321 1133445
Q ss_pred HhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 025670 113 QYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQS 192 (249)
Q Consensus 113 ~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~ 192 (249)
..+++||++.+.|.|..+|.-|+++|| .|++.++++|.+.....|... +..- ...+.+.. .
T Consensus 95 ~~~~~pvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~p---~~g~------------~~~L~~~v--g 155 (260)
T PRK07659 95 YTMPKLTISAIHGPAAGLGLSIALTAD--YVIADISAKLAMNFIGIGLIP---DGGG------------HFFLQKRV--G 155 (260)
T ss_pred HhCCCCEEEEecCceecHHHHHHHhCC--EEEEcCCCEEcCchhhcCCCC---CCch------------hhhHHHhc--C
Confidence 667899999999999999999999999 799999999876554433211 1000 00011222 3
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCcceec
Q 025670 193 IEVIQKNMDRDYFMTPEEAKEFGIIDEVI 221 (249)
Q Consensus 193 ~~~i~~~~~~d~~lsa~EA~e~GlID~I~ 221 (249)
.....+++-....|+++||+++||||+|.
T Consensus 156 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 184 (260)
T PRK07659 156 ENKAKQIIWEGKKLSATEALDLGLIDEVI 184 (260)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCChHHHh
Confidence 34445566567789999999999999998
No 111
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.29 E-value=8.4e-06 Score=73.22 Aligned_cols=144 Identities=17% Similarity=0.209 Sum_probs=102.3
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe----CCCCcHHHH-------------HHHHHHHHhcCC
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN----SPGGQVTAG-------------LAIYDTMQYIRS 117 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN----SPGG~V~ag-------------~aIyd~i~~~~~ 117 (249)
+|.|+-| ++..++..+...+..+++++..+.|+|+=- |-|.++.+. +.-++.+..+++
T Consensus 49 lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~K 128 (290)
T KOG1680|consen 49 LITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKK 128 (290)
T ss_pred EEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhhhhhccc
Confidence 4566654 667788889999999998776666665521 223333322 334566667899
Q ss_pred CEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCC---CCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHH
Q 025670 118 PINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGY---SGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIE 194 (249)
Q Consensus 118 pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~---~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~ 194 (249)
||++-+.|+|..+|.-|++.|| -|+|.|+|.|+.-++..|. .|-..-+ .+ -.|. .
T Consensus 129 PvIaainG~AlgGG~ELalmCD--irva~~~Akfg~~~~~~Gi~p~~GGT~rl--------------~r----~vG~--s 186 (290)
T KOG1680|consen 129 PVIAAINGFALGGGLELALMCD--IRVAGEGAKFGFFEIRMGIIPSWGGTQRL--------------PR----IVGK--S 186 (290)
T ss_pred ceeEeeeceeeccchhhhhhcc--eEeccCCCeecccccccCCccCCCchhhH--------------HH----HhCh--H
Confidence 9999999999999999999999 6999999999987766542 2222111 11 2232 3
Q ss_pred HHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 195 VIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 195 ~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
...+++-....++++||++.|||++|+...+
T Consensus 187 ~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~ 217 (290)
T KOG1680|consen 187 RALEMILTGRRLGAQEAKKIGLVNKVVPSGD 217 (290)
T ss_pred HHHHHHHhcCcccHHHHHhCCceeEeecchh
Confidence 3445566678899999999999999998764
No 112
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.27 E-value=1.7e-05 Score=70.74 Aligned_cols=141 Identities=14% Similarity=0.164 Sum_probs=87.5
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCC------cHHH------------------HHHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLNSPGG------QVTA------------------GLAIYD 110 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG------~V~a------------------g~aIyd 110 (249)
+|.|+-| ++.++...+...+..++.++..+-| .|.+.|+ ++.. ...+++
T Consensus 18 ~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~v--Vltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (260)
T PRK07827 18 TLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAV--VLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLR 95 (260)
T ss_pred EEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEE--EEEcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHH
Confidence 4566654 5667788888888877764433333 3345443 3321 012344
Q ss_pred HHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhC
Q 025670 111 TMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTG 190 (249)
Q Consensus 111 ~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg 190 (249)
.|..+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|. ..+..-. . .+. + .+
T Consensus 96 ~l~~~~kPvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl---~p~~g~~-~---~l~-~--------l~ 157 (260)
T PRK07827 96 AIVELPKPVIAAIDGHVRAGGFGLVGACD--IVVAGPESTFALTEARIGV---APAIISL-T---LLP-R--------LS 157 (260)
T ss_pred HHHhCCCCEEEEEcCeeecchhhHHHhCC--EEEEcCCCEEeCcccccCC---CCCcccc-h---hHH-h--------hh
Confidence 56677899999999999999999999999 7999999988763333221 1111100 0 011 0 11
Q ss_pred CCHHHHHhhhcCCcccCHHHHHHcCCcceecC
Q 025670 191 QSIEVIQKNMDRDYFMTPEEAKEFGIIDEVID 222 (249)
Q Consensus 191 ~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~ 222 (249)
.....+++-....++++||+++||||+|.+
T Consensus 158 --~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~ 187 (260)
T PRK07827 158 --PRAAARYYLTGEKFGAAEAARIGLVTAAAD 187 (260)
T ss_pred --HHHHHHHHHhCCccCHHHHHHcCCcccchH
Confidence 011223333456789999999999999964
No 113
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=98.26 E-value=1.3e-05 Score=78.95 Aligned_cols=142 Identities=11% Similarity=0.027 Sum_probs=89.9
Q ss_pred eCcchHHHHHHHHHHhh-hcCCCCCeEEEEe-----CCCCcHHHHH---------------H----HHHHHHhcCCCEEE
Q 025670 67 INDDTAHVVVAQLLFLE-SENPSKPIHMYLN-----SPGGQVTAGL---------------A----IYDTMQYIRSPINT 121 (249)
Q Consensus 67 Id~~~a~~i~a~L~~l~-~~~~~~~I~l~IN-----SPGG~V~ag~---------------a----Iyd~i~~~~~pV~t 121 (249)
++.++...+.+.+..++ .++..+.|+|.=+ |.|+++.... . +.+.|+.+++||++
T Consensus 49 l~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIA 128 (550)
T PRK08184 49 YDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIA 128 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 66677888888888887 4444444444322 4556543210 1 34556678999999
Q ss_pred EEccccchHHHHHHhcCCCCcEEeccC--ceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhh
Q 025670 122 ICLGQAASMGSLLLASGTKGERRALPN--STIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKN 199 (249)
Q Consensus 122 v~~G~AASaa~~I~~ag~kg~R~a~p~--s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~ 199 (249)
.+.|.|..+|..|+++|| .|++.++ ++|.+-... ..|-....... ..+...+........++
T Consensus 129 AVnG~a~GGG~~LALacD--~rIas~~~~a~fg~pEv~--~~Gl~P~~gg~------------~rl~~~~~vg~~~A~~l 192 (550)
T PRK08184 129 AVNGTCAGGGYELALACD--EIVLVDDRSSAVSLPEVP--LLGVLPGTGGL------------TRVTDKRKVRRDLADIF 192 (550)
T ss_pred EECCEeehHHHHHHHhCC--EEEEecCCCcEEEccchh--ccccCCCcchH------------HHhhhhhhcCHHHHHHH
Confidence 999999999999999999 7999987 666552221 01111111100 00111222334444455
Q ss_pred hcCCcccCHHHHHHcCCcceecCCC
Q 025670 200 MDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 200 ~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
+-....|+++||+++||||++...+
T Consensus 193 lltG~~i~AeeA~~~GLVd~vv~~d 217 (550)
T PRK08184 193 CTIEEGVRGKRAVDWRLVDEVVKPS 217 (550)
T ss_pred HHhCCcccHHHHHHcCCccEeeCHH
Confidence 4456689999999999999998754
No 114
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=98.24 E-value=2.8e-05 Score=69.02 Aligned_cols=132 Identities=16% Similarity=0.191 Sum_probs=85.9
Q ss_pred eCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCc----------HHHHHHHHHHHH---hcCCCEEEEEccccchHHHH
Q 025670 67 INDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQ----------VTAGLAIYDTMQ---YIRSPINTICLGQAASMGSL 133 (249)
Q Consensus 67 Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~----------V~ag~aIyd~i~---~~~~pV~tv~~G~AASaa~~ 133 (249)
++-+-+......+.....++..-||+..+|+||-. ..++-.+..++. ..+.|+++++.|.+.|+|++
T Consensus 45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~l 124 (238)
T TIGR03134 45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFL 124 (238)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHH
Confidence 44444555555555432223467999999999965 333343334444 44599999999999998887
Q ss_pred HHhc-CCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhc--CCcccCHHH
Q 025670 134 LLAS-GTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMD--RDYFMTPEE 210 (249)
Q Consensus 134 I~~a-g~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~--~d~~lsa~E 210 (249)
-+.. ++ ..+|.|++.+..-.|.+. ++-+.++.++..+..+ ...-.+++.
T Consensus 125 amg~~ad--~v~Alp~A~i~vm~~e~a--------------------------a~I~~~~~~~~~e~a~~~~~~a~~~~~ 176 (238)
T TIGR03134 125 AHGLQAD--RIIALPGAMVHVMDLESM--------------------------ARVTKRSVEELEALAKSSPVFAPGIEN 176 (238)
T ss_pred HHccCcC--eEEEcCCcEEEecCHHHH--------------------------HHHHccCHhHHHHHHHhhhhhccCHHH
Confidence 7753 44 799999999987655321 1111133344444332 235568889
Q ss_pred HHHcCCcceecCCCcc
Q 025670 211 AKEFGIIDEVIDQRPM 226 (249)
Q Consensus 211 A~e~GlID~I~~~~~~ 226 (249)
+.++|+||+|++..+.
T Consensus 177 ~~~~G~vd~vi~~~~~ 192 (238)
T TIGR03134 177 FVKLGGVHALLDVADA 192 (238)
T ss_pred HHhCCCccEEeCCCCc
Confidence 9999999999997654
No 115
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.23 E-value=2e-05 Score=79.75 Aligned_cols=147 Identities=14% Similarity=0.206 Sum_probs=94.5
Q ss_pred EEEEcce------eCcchHHHHHHHHHHhhhcCCCCCeEEEE-----eCCCCcHHH----------------HHHHHHHH
Q 025670 60 IICINGP------INDDTAHVVVAQLLFLESENPSKPIHMYL-----NSPGGQVTA----------------GLAIYDTM 112 (249)
Q Consensus 60 iI~L~g~------Id~~~a~~i~a~L~~l~~~~~~~~I~l~I-----NSPGG~V~a----------------g~aIyd~i 112 (249)
+|.|+-| ++.++...+...|..++.++..+.|+|.= =|-|+++.. ...++..|
T Consensus 13 ~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (699)
T TIGR02440 13 ILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAEL 92 (699)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHH
Confidence 3556644 66777888888888887654444443321 133455432 12355678
Q ss_pred HhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccC--ceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhC
Q 025670 113 QYIRSPINTICLGQAASMGSLLLASGTKGERRALPN--STIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTG 190 (249)
Q Consensus 113 ~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~--s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg 190 (249)
..+++||++.+.|.|..+|.-|+++|| .|++.++ +.|.+-....|.. ....- ...+.+..|
T Consensus 93 ~~~~kPvIAaVnG~a~GgG~~LaLacD--~ria~~~~~a~fg~pev~lGl~---p~~g~------------~~~L~r~vG 155 (699)
T TIGR02440 93 EALPIPVVAAIHGACLGGGLELALACH--SRVCSDDDKTVLGLPEVQLGLL---PGSGG------------TQRLPRLIG 155 (699)
T ss_pred HhCCCCEEEEECCEeecHHHHHHHhCC--EEEEcCCCCcEEechhhcccCC---CCccH------------HHHHHHhcC
Confidence 888999999999999999999999999 7999887 5666544333321 00000 001111222
Q ss_pred CCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 191 QSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 191 ~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
.....+++-.+..++++||+++||||+|....+
T Consensus 156 --~~~A~~llltG~~~~a~eA~~~GLV~~vv~~~~ 188 (699)
T TIGR02440 156 --VSTALDMILTGKQLRAKQALKLGLVDDVVPQSI 188 (699)
T ss_pred --HHHHHHHHHcCCcCCHHHHHhCCCCcEecChhH
Confidence 233345555677889999999999999997653
No 116
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.22 E-value=1.9e-05 Score=70.30 Aligned_cols=144 Identities=18% Similarity=0.205 Sum_probs=96.0
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEE----eCCCCcHHHHH----------------HHHHHHHh
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYL----NSPGGQVTAGL----------------AIYDTMQY 114 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~I----NSPGG~V~ag~----------------aIyd~i~~ 114 (249)
+|.|+-| ++.++...+.+.+..++.++..+-|+|.= =|-|+++..-. .+...|+.
T Consensus 17 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 96 (257)
T COG1024 17 VITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALAD 96 (257)
T ss_pred EEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHh
Confidence 4555543 77788889999999888764443333321 12345554311 25567888
Q ss_pred cCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCC-CchhhHHHHHHHHHHHHHHHHHHHHHhhCCCH
Q 025670 115 IRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYS-GQAKDMTIHTKQIVRVWDALNALYCKHTGQSI 193 (249)
Q Consensus 115 ~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~-G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~ 193 (249)
+++||++.+.|.|..+|.-|+++|| .|++.++++|.+.....|.. |.... ..+.+..|.
T Consensus 97 ~~kPvIAav~G~a~GgG~eLal~~D--~ria~~~a~f~~pe~~iGl~Pg~g~~----------------~~l~r~~G~-- 156 (257)
T COG1024 97 LPKPVIAAVNGYALGGGLELALACD--IRIAAEDAKFGLPEVNLGLLPGDGGT----------------QRLPRLLGR-- 156 (257)
T ss_pred CCCCEEEEEcceEeechhhhhhcCC--eEEecCCcEecCcccccccCCCCcHH----------------HHHHHhcCH--
Confidence 8999999999999999999999999 79999999998876554321 11000 011222222
Q ss_pred HHHHhhhcCCcccCHHHHHHcCCcceecCC
Q 025670 194 EVIQKNMDRDYFMTPEEAKEFGIIDEVIDQ 223 (249)
Q Consensus 194 ~~i~~~~~~d~~lsa~EA~e~GlID~I~~~ 223 (249)
....+++-....++++||+++||||+++..
T Consensus 157 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 186 (257)
T COG1024 157 GRAKELLLTGEPISAAEALELGLVDEVVPD 186 (257)
T ss_pred HHHHHHHHcCCcCCHHHHHHcCCcCeeeCC
Confidence 222234445678899999999999998874
No 117
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.21 E-value=1.2e-05 Score=74.93 Aligned_cols=141 Identities=15% Similarity=0.199 Sum_probs=91.5
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCC-------CcHHHH-------------------HHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLNSPG-------GQVTAG-------------------LAI 108 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPG-------G~V~ag-------------------~aI 108 (249)
+|.|+-| ++.++...+...+..++.++..+. +.|.+.| +++..- ..+
T Consensus 15 ~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrv--vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (342)
T PRK05617 15 VITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAA--VVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRL 92 (342)
T ss_pred EEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEE--EEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHH
Confidence 4566655 677788888888888776543333 3334434 443221 123
Q ss_pred HHHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCC---CchhhHHHHHHHHHHHHHHHHHHH
Q 025670 109 YDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYS---GQAKDMTIHTKQIVRVWDALNALY 185 (249)
Q Consensus 109 yd~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~---G~~~di~~~a~~l~~~~~~~~~~y 185 (249)
+..|..+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|.. |-..- +
T Consensus 93 ~~~i~~~~kPvIAaVnG~a~GgG~~LalacD--~ria~~~a~f~~pe~~lGl~P~~g~~~~------------------L 152 (342)
T PRK05617 93 NALIARYPKPYIALMDGIVMGGGVGISAHGS--HRIVTERTKMAMPETGIGFFPDVGGTYF------------------L 152 (342)
T ss_pred HHHHHhCCCCEEEEEcCEEEccHhHHhhhCC--EEEEcCCCEeeCCccccCcCCCccceeE------------------e
Confidence 3556778999999999999999999999999 79999999987644332211 11100 1
Q ss_pred HHhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 186 CKHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 186 a~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
.+..| ....+++-....++|+||+++||||+++...+
T Consensus 153 ~r~~g---~~a~~llltG~~i~A~eA~~~GLv~~vv~~~~ 189 (342)
T PRK05617 153 SRAPG---ALGTYLALTGARISAADALYAGLADHFVPSAD 189 (342)
T ss_pred hhccc---HHHHHHHHcCCCCCHHHHHHcCCcceecCHHH
Confidence 11111 11233333456789999999999999997654
No 118
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.20 E-value=2.9e-05 Score=78.86 Aligned_cols=147 Identities=16% Similarity=0.172 Sum_probs=95.7
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe----CCCCcHHHH------------------HHHHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN----SPGGQVTAG------------------LAIYDTM 112 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN----SPGG~V~ag------------------~aIyd~i 112 (249)
+|.|+-| ++.++...+.+.+..++.++..+.|+|.=+ |-|+++... ..+++.|
T Consensus 19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i 98 (715)
T PRK11730 19 ELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRL 98 (715)
T ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHH
Confidence 4566653 677788888888888876554444443211 334444321 1244556
Q ss_pred HhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 025670 113 QYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQS 192 (249)
Q Consensus 113 ~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~ 192 (249)
..+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|.. .+..-. ..+.+..|
T Consensus 99 ~~~~kPvIAav~G~a~GgG~~LAlacD--~ria~~~a~f~~pe~~lGl~---p~~g~~------------~~L~rlvG-- 159 (715)
T PRK11730 99 EDLPVPTVAAINGYALGGGCECVLATD--YRVASPDARIGLPETKLGIM---PGFGGT------------VRLPRLIG-- 159 (715)
T ss_pred HcCCCCEEEEECCEeehHHHHHHHhCC--EEEEcCCCEEeCchhhcCCC---CCchHH------------HHHHHhcC--
Confidence 778999999999999999999999999 79999999987744333321 111100 00112223
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 193 IEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 193 ~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
.....+++-....++|+||+++||||+|+...+
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~ 192 (715)
T PRK11730 160 ADNALEWIAAGKDVRAEDALKVGAVDAVVAPEK 192 (715)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHH
Confidence 233345555567899999999999999997543
No 119
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.20 E-value=3.3e-05 Score=78.39 Aligned_cols=146 Identities=15% Similarity=0.148 Sum_probs=95.8
Q ss_pred EEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe----CCCCcHHH------------------HHHHHHHH
Q 025670 60 IICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN----SPGGQVTA------------------GLAIYDTM 112 (249)
Q Consensus 60 iI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN----SPGG~V~a------------------g~aIyd~i 112 (249)
+|.|+-+ ++.++...+.+.+..++.++..+.|+|.=+ |-|+++.. +..+++.|
T Consensus 19 ~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i 98 (714)
T TIGR02437 19 ELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKL 98 (714)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHH
Confidence 4566654 677788889899988887555544444211 22344421 23456677
Q ss_pred HhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 025670 113 QYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQS 192 (249)
Q Consensus 113 ~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~ 192 (249)
..+++||++.+.|.|..+|.-|+++|+ .|++.++++|++=....|.. ....- .. + +.+..|.
T Consensus 99 ~~~pkPvIAai~G~alGGGleLalacD--~ria~~~a~fglPEv~lGl~---Pg~Gg----t~----r----L~rliG~- 160 (714)
T TIGR02437 99 EDLPVPTVAAINGIALGGGCECVLATD--FRIADDTAKIGLPETKLGIM---PGFGG----TV----R----LPRVIGA- 160 (714)
T ss_pred HhCCCCEEEEECCeeecHHHHHHHhCC--EEEEeCCCEEecchhhcCCC---CCccH----HH----H----HHHHhCH-
Confidence 788999999999999999999999999 89999999988744333211 11000 00 0 1112232
Q ss_pred HHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 193 IEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 193 ~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
....+++-....++++||+++||||+|....
T Consensus 161 -~~A~~llltG~~~~A~eA~~~GLvd~vv~~~ 191 (714)
T TIGR02437 161 -DNALEWIASGKENRAEDALKVGAVDAVVTAD 191 (714)
T ss_pred -HHHHHHHHcCCcCCHHHHHHCCCCcEeeChh
Confidence 2223444456779999999999999998754
No 120
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.18 E-value=3.3e-05 Score=73.42 Aligned_cols=147 Identities=14% Similarity=0.094 Sum_probs=97.3
Q ss_pred cEEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe----CCCCcHHHHH----------------H---HHH
Q 025670 59 RIICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN----SPGGQVTAGL----------------A---IYD 110 (249)
Q Consensus 59 riI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN----SPGG~V~ag~----------------a---Iyd 110 (249)
.+|.|+-| ++.++...+...|..++.++..+-|+|.=+ |-||++.+-. . +..
T Consensus 48 ~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~ 127 (401)
T PLN02157 48 RTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIY 127 (401)
T ss_pred EEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 46778877 788888999999998887655544444311 4567764310 1 123
Q ss_pred HHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhC
Q 025670 111 TMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTG 190 (249)
Q Consensus 111 ~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg 190 (249)
.|..+++||++.+.|.|..+|.-|+++|+ .|++.++++|.+-....|. ..+..-.. . +.+..|
T Consensus 128 ~i~~~pkPvIA~v~G~a~GGG~~Lal~cD--~rvate~a~fa~PE~~iGl---~Pd~G~s~--------~----L~rl~G 190 (401)
T PLN02157 128 LLGTYLKPHVAILNGVTMGGGTGVSIPGT--FRVATDRTIFATPETIIGF---HPDAGASF--------N----LSHLPG 190 (401)
T ss_pred HHHhCCCCEEEEEeCeEeehhHHHHHhCC--EEEEeCCCEEEChhhhcCC---CCCccHHH--------H----HHHhhh
Confidence 46678999999999999999999999999 7999999988764433332 12211000 0 111112
Q ss_pred CCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 191 QSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 191 ~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
. .-..++=.+..|+++||+++||+|+++...+
T Consensus 191 ~---~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~ 222 (401)
T PLN02157 191 R---LGEYLGLTGLKLSGAEMLACGLATHYIRSEE 222 (401)
T ss_pred H---HHHHHHHcCCcCCHHHHHHcCCceEEeCHhH
Confidence 1 1123333467889999999999999997654
No 121
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=98.17 E-value=4.7e-05 Score=71.92 Aligned_cols=147 Identities=17% Similarity=0.156 Sum_probs=93.9
Q ss_pred cEEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe----CCCCcHHHHH------------H-------HHH
Q 025670 59 RIICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN----SPGGQVTAGL------------A-------IYD 110 (249)
Q Consensus 59 riI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN----SPGG~V~ag~------------a-------Iyd 110 (249)
.+|.|+-| ++.++...+.+.|..++.++..+.|+|.=+ |-||++.... . +..
T Consensus 20 ~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~ 99 (381)
T PLN02988 20 RILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNY 99 (381)
T ss_pred EEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHH
Confidence 35677766 777788999999998876554444433211 3356664311 1 122
Q ss_pred HHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhC
Q 025670 111 TMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTG 190 (249)
Q Consensus 111 ~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg 190 (249)
.|..+++||++.+.|.|..+|.-|+++|+ .|++.++++|.+=....|. ..+..-. -.+.+ +... .
T Consensus 100 ~i~~~pKPvIa~v~G~a~GGG~~Lal~~D--~rvate~a~f~mPE~~iGl---~Pd~G~s-~~L~r----l~G~----~- 164 (381)
T PLN02988 100 VMATYSKAQVSILNGIVMGGGAGVSVHGR--FRIATENTVFAMPETALGL---FPDVGAS-YFLSR----LPGF----F- 164 (381)
T ss_pred HHHHCCCCEEEEecCeEeehhhHHhhcCC--eEEEcCCcEEeChhhhcCc---CCCccHH-HHHHH----HHHH----H-
Confidence 46678999999999999999999999999 7999999988653332222 1121110 00111 1110 0
Q ss_pred CCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 191 QSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 191 ~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
-..++=.+..++++||+++||+|+++...+
T Consensus 165 -----~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~ 194 (381)
T PLN02988 165 -----GEYVGLTGARLDGAEMLACGLATHFVPSTR 194 (381)
T ss_pred -----HHHHHHcCCCCCHHHHHHcCCceEecCHhH
Confidence 112333456889999999999999997654
No 122
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.15 E-value=4.6e-05 Score=77.26 Aligned_cols=147 Identities=15% Similarity=0.200 Sum_probs=95.0
Q ss_pred EEEEcce------eCcchHHHHHHHHHHhhhcCCCCCeEEEEe-----CCCCcHHH----------------HHHHHHHH
Q 025670 60 IICINGP------INDDTAHVVVAQLLFLESENPSKPIHMYLN-----SPGGQVTA----------------GLAIYDTM 112 (249)
Q Consensus 60 iI~L~g~------Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN-----SPGG~V~a----------------g~aIyd~i 112 (249)
+|.|+-| ++.++...+...+..++.++..+.|+|.=. |-|+++.. ...+++.|
T Consensus 18 ~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 97 (708)
T PRK11154 18 VITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEI 97 (708)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence 4566644 667788888888888876443333333211 23344422 12356677
Q ss_pred HhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCc--eEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhC
Q 025670 113 QYIRSPINTICLGQAASMGSLLLASGTKGERRALPNS--TIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTG 190 (249)
Q Consensus 113 ~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s--~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg 190 (249)
..+++||++.+.|.|..+|.-|+++|| .|++.+++ +|++.....|.. ....- ...+.+..|
T Consensus 98 ~~~~kPvIAaV~G~a~GgG~~LalacD--~ria~~~a~a~fg~pe~~lGl~---p~~gg------------~~~L~r~vG 160 (708)
T PRK11154 98 EALPIPVVAAIHGACLGGGLELALACH--YRVCTDDPKTVLGLPEVQLGLL---PGSGG------------TQRLPRLIG 160 (708)
T ss_pred HhCCCCEEEEECCeeechHHHHHHhCC--EEEEeCCCCceEeCccccCCCC---CCccH------------HhHHHhhcC
Confidence 888999999999999999999999999 79999975 666655443321 11100 011122223
Q ss_pred CCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 191 QSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 191 ~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
.....+++-....++++||+++||||+++...+
T Consensus 161 --~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~ 193 (708)
T PRK11154 161 --VSTALDMILTGKQLRAKQALKLGLVDDVVPHSI 193 (708)
T ss_pred --HHHHHHHHHhCCcCCHHHHHHCCCCcEecChHH
Confidence 233445555677899999999999999997654
No 123
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.12 E-value=5.7e-05 Score=71.30 Aligned_cols=145 Identities=14% Similarity=0.186 Sum_probs=93.2
Q ss_pred cEEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEeCC------CCcHHHH----------HH-H------HH
Q 025670 59 RIICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLNSP------GGQVTAG----------LA-I------YD 110 (249)
Q Consensus 59 riI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSP------GG~V~ag----------~a-I------yd 110 (249)
.+|.|+-| ++.++...+...+..++.++..+.|+| .+. ||++... .. + ..
T Consensus 22 ~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl--~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (379)
T PLN02874 22 RVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIII--KGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCY 99 (379)
T ss_pred EEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEE--ECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 35777776 777888899999988886554443333 333 4554321 00 1 22
Q ss_pred HHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhC
Q 025670 111 TMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTG 190 (249)
Q Consensus 111 ~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg 190 (249)
.|..+++||++.+.|.|..+|.-|+++|| .|++.++++|.+-....|.. .+...... + .+..|
T Consensus 100 ~i~~~~kPvIAaV~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~iGl~---p~~g~~~~----L--------~rl~g 162 (379)
T PLN02874 100 HIHTYKKTQVALVHGLVMGGGAGLMVPMK--FRVVTEKTVFATPEASVGFH---TDCGFSYI----L--------SRLPG 162 (379)
T ss_pred HHHhCCCCEEEEecCeEEecHHHHHHhCC--eEEEeCCeEEeccccccCcC---CChhHHHH----H--------HhhhH
Confidence 46677899999999999999999999999 79999999887644333321 12111000 1 11111
Q ss_pred CCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 191 QSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 191 ~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
. .-..++-.+..++++||+++||||+|+...+
T Consensus 163 ~---~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~ 194 (379)
T PLN02874 163 H---LGEYLALTGARLNGKEMVACGLATHFVPSEK 194 (379)
T ss_pred H---HHHHHHHcCCcccHHHHHHcCCccEEeCHHH
Confidence 0 0112333456789999999999999997654
No 124
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=98.05 E-value=4.6e-05 Score=75.06 Aligned_cols=142 Identities=13% Similarity=0.059 Sum_probs=87.5
Q ss_pred eCcchHHHHHHHHHHhh-hcCCCCCeEEEEe-----CCCCcHHHH-------------------HHHHHHHHhcCCCEEE
Q 025670 67 INDDTAHVVVAQLLFLE-SENPSKPIHMYLN-----SPGGQVTAG-------------------LAIYDTMQYIRSPINT 121 (249)
Q Consensus 67 Id~~~a~~i~a~L~~l~-~~~~~~~I~l~IN-----SPGG~V~ag-------------------~aIyd~i~~~~~pV~t 121 (249)
++.++...+.+.|..++ .++..+-|+|.-. |.|+++... ..+.+.|+.+++||++
T Consensus 45 l~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIA 124 (546)
T TIGR03222 45 YDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLA 124 (546)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 56667788888888887 4343344444322 456665431 1234556678999999
Q ss_pred EEccccchHHHHHHhcCCCCcEEeccC--ceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhh
Q 025670 122 ICLGQAASMGSLLLASGTKGERRALPN--STIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKN 199 (249)
Q Consensus 122 v~~G~AASaa~~I~~ag~kg~R~a~p~--s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~ 199 (249)
.+.|.|..+|.-|+++|| .|++.++ ++|.+-... ..|-.....- ... +............++
T Consensus 125 AVnG~a~GGG~~LALacD--~rvAs~~a~a~f~~pEv~--~lGl~P~~gg-----------~~~-l~~~~~vg~~~A~~l 188 (546)
T TIGR03222 125 AVNGTCAGGGYELALACD--EIMLVDDRSSSVSLPEVP--LLGVLPGTGG-----------LTR-VTDKRRVRRDHADIF 188 (546)
T ss_pred EECCEeehHHHHHHHhCC--EEEEecCCCcEEEccchh--ccCcCCccch-----------hhh-ccccchhCHHHHHHH
Confidence 999999999999999999 7999986 566542221 0111111100 000 111111223333344
Q ss_pred hcCCcccCHHHHHHcCCcceecCCC
Q 025670 200 MDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 200 ~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
+-....|+++||+++||||+|++..
T Consensus 189 lltG~~i~A~eA~~~GLV~~vv~~~ 213 (546)
T TIGR03222 189 CTIEEGVRGKRAKEWRLVDEVVKPS 213 (546)
T ss_pred HHcCCCccHHHHHHcCCceEEeChH
Confidence 4445678999999999999998754
No 125
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.96 E-value=0.0002 Score=73.07 Aligned_cols=137 Identities=15% Similarity=0.156 Sum_probs=89.1
Q ss_pred eCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCC------CcHHH----------------HHHHHHHHHhcCCCEEEEEc
Q 025670 67 INDDTAHVVVAQLLFLESENPSKPIHMYLNSPG------GQVTA----------------GLAIYDTMQYIRSPINTICL 124 (249)
Q Consensus 67 Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPG------G~V~a----------------g~aIyd~i~~~~~pV~tv~~ 124 (249)
++.++...+.+.+..++.++..+.+ |.+.+.| +++.. ...+++.|..+++||++.+.
T Consensus 38 l~~~~~~~L~~al~~~~~d~~vr~v-Vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~ 116 (737)
T TIGR02441 38 LSKELFAEFKEVMNELWTNEAIKSA-VLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAIS 116 (737)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCEEE-EEEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 5567778888888888764433322 3334333 44422 22456677788999999999
Q ss_pred cccchHHHHHHhcCCCCcEEeccCc--eEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcC
Q 025670 125 GQAASMGSLLLASGTKGERRALPNS--TIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDR 202 (249)
Q Consensus 125 G~AASaa~~I~~ag~kg~R~a~p~s--~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~ 202 (249)
|.|..+|.-|+++|| .|++.+++ .|++.....|.. ....- . ..+.+..|. ....+++-.
T Consensus 117 G~a~GgG~eLALacD--~ria~~~a~a~fglpEv~lGl~---Pg~Gg----t--------~rLprliG~--~~A~~l~lt 177 (737)
T TIGR02441 117 GSCLGGGLELALACH--YRIATKDRKTLLGLPEVMLGLL---PGAGG----T--------QRLPKLTGV--PAALDMMLT 177 (737)
T ss_pred CEeecHHHHHHHhCC--EEEEcCCCCCeEecchhhhCCC---CCccH----h--------hhHHHhhCH--HHHHHHHHc
Confidence 999999999999999 89999884 566544332211 01000 0 001222232 223345556
Q ss_pred CcccCHHHHHHcCCcceecCC
Q 025670 203 DYFMTPEEAKEFGIIDEVIDQ 223 (249)
Q Consensus 203 d~~lsa~EA~e~GlID~I~~~ 223 (249)
+..++++||+++||||+|.+.
T Consensus 178 G~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 178 GKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred CCcCCHHHHHHCCCCeEecCC
Confidence 778899999999999999975
No 126
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.91 E-value=8.3e-05 Score=72.82 Aligned_cols=144 Identities=21% Similarity=0.296 Sum_probs=92.1
Q ss_pred cceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCC----------cHHHHHHHHHHHHhcCCCEEEEEccccchHHHH
Q 025670 64 NGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGG----------QVTAGLAIYDTMQYIRSPINTICLGQAASMGSL 133 (249)
Q Consensus 64 ~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG----------~V~ag~aIyd~i~~~~~pV~tv~~G~AASaa~~ 133 (249)
.|.+++..++.+...+...+. ..-||+..+||||- .+..+..+...+.....|+.+++.|.++++|++
T Consensus 328 ~G~~~~~~~~K~~r~i~~a~~--~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~ 405 (512)
T TIGR01117 328 AGCLDIDSSDKIARFIRFCDA--FNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYL 405 (512)
T ss_pred cCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHH
Confidence 355677777777776665543 25799999999996 355666677777777899999999999998766
Q ss_pred HHhc--CCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHH
Q 025670 134 LLAS--GTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEEA 211 (249)
Q Consensus 134 I~~a--g~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA 211 (249)
.+++ -..+..++.|++.+.+-.|.+.. .+. ..+++.+..+. .+. -.+++.+.. +.+.++..+
T Consensus 406 am~~~~~~~d~~~a~p~a~~~v~~pe~a~-----~i~-~~~~l~~~~~~-----~~~---~~~~~~~~~--~~~~~~~~~ 469 (512)
T TIGR01117 406 AMCSKHLGADQVYAWPTAEIAVMGPAGAA-----NII-FRKDIKEAKDP-----AAT---RKQKIAEYR--EEFANPYKA 469 (512)
T ss_pred HhccccCCCCEEEEcCCCeEeecCHHHHH-----HHH-hhhhcccccCH-----HHH---HHHHHHHHH--HhhcCHHHH
Confidence 6653 11237999999999987775421 000 00111000000 000 011222222 235688899
Q ss_pred HHcCCcceecCCCc
Q 025670 212 KEFGIIDEVIDQRP 225 (249)
Q Consensus 212 ~e~GlID~I~~~~~ 225 (249)
.+.|+||.|+++.+
T Consensus 470 a~~g~vD~VI~P~~ 483 (512)
T TIGR01117 470 AARGYVDDVIEPKQ 483 (512)
T ss_pred HhcCCCCeeEChHH
Confidence 99999999999865
No 127
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.84 E-value=0.00048 Score=67.99 Aligned_cols=140 Identities=11% Similarity=0.124 Sum_probs=89.9
Q ss_pred eCcchHHHHHHHHHHhhhcCCCCCeEEEE-eCCC-------CcHH-----------HH----HHHHHHHHhcCCCEEEEE
Q 025670 67 INDDTAHVVVAQLLFLESENPSKPIHMYL-NSPG-------GQVT-----------AG----LAIYDTMQYIRSPINTIC 123 (249)
Q Consensus 67 Id~~~a~~i~a~L~~l~~~~~~~~I~l~I-NSPG-------G~V~-----------ag----~aIyd~i~~~~~pV~tv~ 123 (249)
++.++...+.+.+..++.++ .+|.+.| .+-| +++. .. ..++..|..+++||++.+
T Consensus 295 l~~~~~~~L~~a~~~~~~~d--~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav 372 (546)
T TIGR03222 295 WPLKLARELDDAILHLRTNE--LDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALI 372 (546)
T ss_pred CCHHHHHHHHHHHHHHhhCC--CCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 56677888888888887542 2344332 3322 3331 11 124566778899999999
Q ss_pred -ccccchHH-HHHHhcCCCCcEEe-------ccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhh-CCCH
Q 025670 124 -LGQAASMG-SLLLASGTKGERRA-------LPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHT-GQSI 193 (249)
Q Consensus 124 -~G~AASaa-~~I~~ag~kg~R~a-------~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~t-g~~~ 193 (249)
.|.|..+| .=|+++|| -|++ .++++|.+-....|......-. ..+.+.. |.+.
T Consensus 373 ~~G~a~GgG~~eLalacD--~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~---------------~~L~~~v~G~~~ 435 (546)
T TIGR03222 373 EPGSCFAGTLAELAFAAD--RSYMLAFPDNNDPEPAITLSELNFGLYPMVNGL---------------SRLATRFYAEPA 435 (546)
T ss_pred CCCeEeHHHHHHHHHhCc--eeeecCCCCCCCCCCEEeCCccccccCCCcCcH---------------HHHHHHhcCchh
Confidence 89999999 99999999 7999 8999987655443322110000 1123333 5444
Q ss_pred HHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 194 EVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 194 ~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
..-.+++-....++|+||.++|||++|.+..+
T Consensus 436 a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~ 467 (546)
T TIGR03222 436 PVAAVRDKIGQALDAEEAERLGLVTAAPDDID 467 (546)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCcccccCchH
Confidence 32222333457789999999999999987643
No 128
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.51 E-value=0.00093 Score=66.04 Aligned_cols=140 Identities=12% Similarity=0.126 Sum_probs=85.3
Q ss_pred eCcchHHHHHHHHHHhhhc-CCCCCeEEEEeCCC-------CcHH-----------HH----HHHHHHHHhcCCCEEEEE
Q 025670 67 INDDTAHVVVAQLLFLESE-NPSKPIHMYLNSPG-------GQVT-----------AG----LAIYDTMQYIRSPINTIC 123 (249)
Q Consensus 67 Id~~~a~~i~a~L~~l~~~-~~~~~I~l~INSPG-------G~V~-----------ag----~aIyd~i~~~~~pV~tv~ 123 (249)
++.++...+.+.+..++.+ +..+.|+ |.+-| +++. .. ..++..|..+++||++.+
T Consensus 299 l~~~~~~eL~~al~~~~~~d~~vr~vV--ltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 376 (550)
T PRK08184 299 WPLQMARELDDAILHLRTNELDIGTWV--LKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALI 376 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEE--EEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4566777888888877642 3233333 33333 3421 10 123455667789999999
Q ss_pred c-cccchHH-HHHHhcCCCCcEEec-------cCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh-hCCCH
Q 025670 124 L-GQAASMG-SLLLASGTKGERRAL-------PNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKH-TGQSI 193 (249)
Q Consensus 124 ~-G~AASaa-~~I~~ag~kg~R~a~-------p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~-tg~~~ 193 (249)
. |.|..+| .-|+++|| .|++. ++++|++-....|......-. ..+.+. .|...
T Consensus 377 ~~G~a~GgG~~eLalacD--~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~---------------~~L~r~~vG~~~ 439 (550)
T PRK08184 377 EPGSCFAGTLAELALAAD--RSYMLALPDDNDPAPAITLSALNFGLYPMVNGL---------------SRLARRFYGEPD 439 (550)
T ss_pred CCCceehhHHHHHHHHCC--hhhhcCCCCCCCCCCEEECccccccCCCCCCcH---------------HHhHHHhcChHH
Confidence 7 9999999 99999999 79999 999987655443321100000 012222 24332
Q ss_pred HHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 194 EVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 194 ~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
..-..++-....++++||+++|||++|....+
T Consensus 440 A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~ 471 (550)
T PRK08184 440 PLAAVRAKIGQPLDADAAEELGLVTAAPDDID 471 (550)
T ss_pred HHHHHHHHhCCcCCHHHHHHcCCcccccChHH
Confidence 21111112456889999999999999987543
No 129
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=97.47 E-value=0.004 Score=61.82 Aligned_cols=151 Identities=13% Similarity=0.027 Sum_probs=90.9
Q ss_pred ceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCc----------HHHHHHHHHHHHhcCCCEEEEEccccchHHHHH
Q 025670 65 GPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQ----------VTAGLAIYDTMQYIRSPINTICLGQAASMGSLL 134 (249)
Q Consensus 65 g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~----------V~ag~aIyd~i~~~~~pV~tv~~G~AASaa~~I 134 (249)
|.++.+.+.....-+...+. -.-||+..+|+||-. +..+-.+..++.....|+.+++.|.|+++|++-
T Consensus 380 g~l~~~~a~Kaarfi~lc~~--~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~a 457 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ--RGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYG 457 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh--cCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHH
Confidence 44666666666555554443 246999999999954 455666677777788999999999999999888
Q ss_pred HhcC--CCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHH
Q 025670 135 LASG--TKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEEAK 212 (249)
Q Consensus 135 ~~ag--~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~ 212 (249)
+++. ..+..++.|++.+.+-.|.+. ..+- ...++.+..+.-...-.+....-.+++.+..+ ...++-.|-
T Consensus 458 M~g~~~~~d~~~awp~A~i~vmg~e~a-----a~il-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~aa 529 (569)
T PLN02820 458 MCGRAYSPNFLFMWPNARIGVMGGAQA-----AGVL-AQIERENKKRQGIQWSKEEEEAFKAKTVEAYE--REANPYYST 529 (569)
T ss_pred hcCcCCCCCEEEECCCCeEEecCHHHH-----HHHH-HHHHhhhhhhccccCCccHHHHHHHHHHHHHH--HhCCHHHHH
Confidence 8643 334688999999987665432 1110 01111111100000000000000122223222 256888999
Q ss_pred HcCCcceecCCCc
Q 025670 213 EFGIIDEVIDQRP 225 (249)
Q Consensus 213 e~GlID~I~~~~~ 225 (249)
+.|+||+|+++.+
T Consensus 530 ~~~~vD~VIdP~d 542 (569)
T PLN02820 530 ARLWDDGVIDPAD 542 (569)
T ss_pred HcCCcCcccCHHH
Confidence 9999999999765
No 130
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.42 E-value=0.00088 Score=60.77 Aligned_cols=108 Identities=27% Similarity=0.437 Sum_probs=77.8
Q ss_pred CCCeEEEEeCCCCcH-------HHHHHHHHHHH---hcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCC
Q 025670 88 SKPIHMYLNSPGGQV-------TAGLAIYDTMQ---YIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPS 157 (249)
Q Consensus 88 ~~~I~l~INSPGG~V-------~ag~aIyd~i~---~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~ 157 (249)
.-||+.+||+||-.. -.+.+|...+. .++.||++++.|-..|+|++-...|+ +.+|+.||...+-.|.
T Consensus 150 ~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad--~V~mle~s~ySVisPE 227 (317)
T COG0825 150 GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVAD--RVLMLENSTYSVISPE 227 (317)
T ss_pred CCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHH--HHHHHHhceeeecChh
Confidence 369999999999653 33566765544 46799999999999999999999999 7999999999988886
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 158 GGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 158 ~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
+-+ + ++=+-+.+..+ ..+. .-+|+.+-+++||||.|+...
T Consensus 228 G~A----s------------------ILWkD~~ka~e-AAe~----mkita~dLk~lgiID~II~Ep 267 (317)
T COG0825 228 GCA----S------------------ILWKDASKAKE-AAEA----MKITAHDLKELGIIDGIIPEP 267 (317)
T ss_pred hhh----h------------------hhhcChhhhHH-HHHH----cCCCHHHHHhCCCcceeccCC
Confidence 531 1 11011111111 1122 236889999999999999864
No 131
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.40 E-value=0.0023 Score=58.49 Aligned_cols=127 Identities=19% Similarity=0.216 Sum_probs=85.4
Q ss_pred EEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHH-------HHHH---HHhcCCCEEEEEccccchHH
Q 025670 62 CINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLA-------IYDT---MQYIRSPINTICLGQAASMG 131 (249)
Q Consensus 62 ~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~a-------Iyd~---i~~~~~pV~tv~~G~AASaa 131 (249)
|++|.++...++.+...+...... .-|++++.+|+|....+|.. +... +.....|..+++.|-|+.++
T Consensus 132 f~gGS~g~~~~eKi~r~~e~A~~~--~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~ 209 (292)
T PRK05654 132 FMGGSMGSVVGEKIVRAVERAIEE--KCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV 209 (292)
T ss_pred cccCCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHH
Confidence 445666677888888777765543 46999999999987766542 2222 22335899999999998887
Q ss_pred HHHHh-cCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHH
Q 025670 132 SLLLA-SGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEE 210 (249)
Q Consensus 132 ~~I~~-ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~E 210 (249)
+..+. .++ -+++.|++.+++-.|. . +.+.++ +++.+ -+-+++-
T Consensus 210 aas~a~~~D--~iia~p~A~ig~aGpr---------------v-----------ie~~~~---e~lpe-----~~~~ae~ 253 (292)
T PRK05654 210 SASFAMLGD--IIIAEPKALIGFAGPR---------------V-----------IEQTVR---EKLPE-----GFQRAEF 253 (292)
T ss_pred HHHHHHcCC--EEEEecCcEEEecCHH---------------H-----------HHhhhh---hhhhh-----hhcCHHH
Confidence 76654 466 6999999999886551 0 111111 11111 1446777
Q ss_pred HHHcCCcceecCCCcc
Q 025670 211 AKEFGIIDEVIDQRPM 226 (249)
Q Consensus 211 A~e~GlID~I~~~~~~ 226 (249)
+.+.|+||.|++..+.
T Consensus 254 ~~~~G~vD~Vv~~~e~ 269 (292)
T PRK05654 254 LLEHGAIDMIVHRREL 269 (292)
T ss_pred HHhCCCCcEEECHHHH
Confidence 8899999999997653
No 132
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.38 E-value=0.00028 Score=68.78 Aligned_cols=147 Identities=18% Similarity=0.227 Sum_probs=89.1
Q ss_pred ceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCC----------CcHHHHHHHHHHHHhcCCCEEEEEccccchHHHHH
Q 025670 65 GPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPG----------GQVTAGLAIYDTMQYIRSPINTICLGQAASMGSLL 134 (249)
Q Consensus 65 g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPG----------G~V~ag~aIyd~i~~~~~pV~tv~~G~AASaa~~I 134 (249)
|.++.+.+.....-+...+.. .-||+..+|+|| |.+..+-.+.+++...+.|+.+++.|-+.++|++.
T Consensus 308 G~~~~~~a~K~arfi~lcd~~--~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~a 385 (493)
T PF01039_consen 308 GALDPDGARKAARFIRLCDAF--NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYA 385 (493)
T ss_dssp GEB-HHHHHHHHHHHHHHHHT--T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHhh--CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhh
Confidence 667777777776666655543 359999999999 55778889999999999999999999999988777
Q ss_pred HhcCC--CCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHHHH
Q 025670 135 LASGT--KGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEEAK 212 (249)
Q Consensus 135 ~~ag~--kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~ 212 (249)
+++.. .+..++.|++++.+..|.+.+ .+. ..+++......=.+ .++. ..+.+.+.. +...++..|.
T Consensus 386 m~~~~~~~~~~~Awp~a~~~vm~~e~a~-----~i~-~~~~~~~~~~~~~~-~~~~---~~~~~~~~~--~~~~~~~~~a 453 (493)
T PF01039_consen 386 MCGRGYGPDFVFAWPTAEIGVMGPEGAA-----SIL-YRDELEAAEAEGAD-PEAQ---RAEKIAEYE--DELSSPYRAA 453 (493)
T ss_dssp TTGGGGTTSEEEEETT-EEESS-HHHHH-----HHH-THHHHHHSCHCCHS-HHHH---HHHHHHHHH--HHHSSHHHHH
T ss_pred hcccccchhhhhhhhcceeeecChhhhh-----eee-ehhhhhhhhcccch-hHHH---HHHHHHHHH--HhcCCHHHHH
Confidence 66551 236899999999887654321 110 00000000000000 0000 112222221 2345889999
Q ss_pred HcCCcceecCCCc
Q 025670 213 EFGIIDEVIDQRP 225 (249)
Q Consensus 213 e~GlID~I~~~~~ 225 (249)
+.|++|.|+++.+
T Consensus 454 ~~~~~D~ii~p~~ 466 (493)
T PF01039_consen 454 SRGYVDDIIDPAE 466 (493)
T ss_dssp HTTSSSEESSGGG
T ss_pred hcCCCCCccCHHH
Confidence 9999999999865
No 133
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.31 E-value=0.0025 Score=58.05 Aligned_cols=128 Identities=18% Similarity=0.209 Sum_probs=87.1
Q ss_pred EEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHH-------HH---HHhcCCCEEEEEccccchHH
Q 025670 62 CINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIY-------DT---MQYIRSPINTICLGQAASMG 131 (249)
Q Consensus 62 ~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIy-------d~---i~~~~~pV~tv~~G~AASaa 131 (249)
|+.|.++....+.+...+..+... .-|+++.++|+|.-..++.... .. +.....|..+++.|-|+.++
T Consensus 131 f~gGSmg~~~geKi~r~~e~A~~~--~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~ 208 (285)
T TIGR00515 131 FMGGSMGSVVGEKFVRAIEKALED--NCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGV 208 (285)
T ss_pred ccCCCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHH
Confidence 445666666788888777765542 4699999999998766654222 12 22335899999999998887
Q ss_pred HHHHh-cCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHHH
Q 025670 132 SLLLA-SGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPEE 210 (249)
Q Consensus 132 ~~I~~-ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~E 210 (249)
+..+. .++ -+++.|++.+++-.|. ++.+.++. .+. +-+-+++-
T Consensus 209 aas~a~~~D--~iia~p~A~ig~aGpr--------------------------Vie~ti~e-------~lp-e~~q~ae~ 252 (285)
T TIGR00515 209 SASFAMLGD--LNIAEPKALIGFAGPR--------------------------VIEQTVRE-------KLP-EGFQTSEF 252 (285)
T ss_pred HHHHHhCCC--EEEEECCeEEEcCCHH--------------------------HHHHHhcC-------ccc-hhcCCHHH
Confidence 77664 777 6999999999885542 11122221 112 22557787
Q ss_pred HHHcCCcceecCCCccc
Q 025670 211 AKEFGIIDEVIDQRPMA 227 (249)
Q Consensus 211 A~e~GlID~I~~~~~~~ 227 (249)
+.+.|+||.|++..+..
T Consensus 253 ~~~~G~vD~iv~~~~~r 269 (285)
T TIGR00515 253 LLEHGAIDMIVHRPEMK 269 (285)
T ss_pred HHhCCCCcEEECcHHHH
Confidence 88999999999976533
No 134
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=96.71 E-value=0.011 Score=53.57 Aligned_cols=93 Identities=12% Similarity=0.151 Sum_probs=67.6
Q ss_pred EEcceeCcchHHHHHHHHHHhhhcC---CCCCeEEEEeCCCCcHHHHH-------HHHHHHHhcC--CCEEEEEccc--c
Q 025670 62 CINGPINDDTAHVVVAQLLFLESEN---PSKPIHMYLNSPGGQVTAGL-------AIYDTMQYIR--SPINTICLGQ--A 127 (249)
Q Consensus 62 ~L~g~Id~~~a~~i~a~L~~l~~~~---~~~~I~l~INSPGG~V~ag~-------aIyd~i~~~~--~pV~tv~~G~--A 127 (249)
|++|.+++.....+...+..+..++ ..-|+++.++|.|+-+..+. .++..+...+ .|+++++.|- |
T Consensus 70 ~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~gc 149 (274)
T TIGR03133 70 FQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVGC 149 (274)
T ss_pred ccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCc
Confidence 4456666667778877766554322 12489999999999876644 2232222222 7999999999 8
Q ss_pred chHHHHHHhcCCCCcEEeccCceEeeecC
Q 025670 128 ASMGSLLLASGTKGERRALPNSTIMIHQP 156 (249)
Q Consensus 128 ASaa~~I~~ag~kg~R~a~p~s~imiHqp 156 (249)
+.+++++++.++ ..+|.|++++.+-.|
T Consensus 150 ~GG~a~~a~l~D--~vim~~~a~i~~aGP 176 (274)
T TIGR03133 150 FGGMGIAAGLCS--YLIMTEEGRLGLSGP 176 (274)
T ss_pred chHHHHHHhcCC--EEEEeCCcEEeccCH
Confidence 899998888888 799999999988766
No 135
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=96.45 E-value=0.015 Score=53.35 Aligned_cols=93 Identities=11% Similarity=0.157 Sum_probs=66.7
Q ss_pred EEcceeCcchHHHHHHHHHHhhhcC---CCCCeEEEEeCCCCcHHHHH-------HHHHHHHhcC--CCEEEEEccc--c
Q 025670 62 CINGPINDDTAHVVVAQLLFLESEN---PSKPIHMYLNSPGGQVTAGL-------AIYDTMQYIR--SPINTICLGQ--A 127 (249)
Q Consensus 62 ~L~g~Id~~~a~~i~a~L~~l~~~~---~~~~I~l~INSPGG~V~ag~-------aIyd~i~~~~--~pV~tv~~G~--A 127 (249)
|++|.+++.....+...+..+.... ..-|+++.++|.|+-+.++. .++..+...+ .|+++++.|- |
T Consensus 79 f~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~gc 158 (301)
T PRK07189 79 FMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVGC 158 (301)
T ss_pred ccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 4455566666777776666544322 02699999999999765433 2333322232 7999999998 9
Q ss_pred chHHHHHHhcCCCCcEEeccCceEeeecC
Q 025670 128 ASMGSLLLASGTKGERRALPNSTIMIHQP 156 (249)
Q Consensus 128 ASaa~~I~~ag~kg~R~a~p~s~imiHqp 156 (249)
+.++++++..++ ..+|.+++++++-.|
T Consensus 159 ~GG~a~~a~l~D--~iIm~~~a~iglaGP 185 (301)
T PRK07189 159 FGGMGIAAALCS--YLIVSEEGRLGLSGP 185 (301)
T ss_pred cHHHHHHHhcCC--EEEEECCcEEeccCH
Confidence 999999988888 799999999988776
No 136
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=96.42 E-value=0.036 Score=49.06 Aligned_cols=115 Identities=19% Similarity=0.224 Sum_probs=78.0
Q ss_pred hcCCCCCeEEEEeCCCC---cH----------HHHHHHHHHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCce
Q 025670 84 SENPSKPIHMYLNSPGG---QV----------TAGLAIYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNST 150 (249)
Q Consensus 84 ~~~~~~~I~l~INSPGG---~V----------~ag~aIyd~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~ 150 (249)
.+.+..||++.|++||= .- .....-|+.-|..+.||+..+.|.|.|+|.+-. +-.-+..+++|.+.
T Consensus 60 ~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~-GlqA~rl~AL~ga~ 138 (234)
T PF06833_consen 60 RSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAH-GLQANRLIALPGAM 138 (234)
T ss_pred hcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHH-HHHhcchhcCCCCe
Confidence 44567899999999994 22 233344566667788999999999999885443 32223789999544
Q ss_pred EeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcc--cCHHHHHHcCCcceecCCCc
Q 025670 151 IMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYF--MTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 151 imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~--lsa~EA~e~GlID~I~~~~~ 225 (249)
+ |-.. ....++-|.+|.++++++...--. ...+-=..+|.++++++...
T Consensus 139 i--~vM~------------------------~~s~ARVTk~~ve~Le~la~s~PvfA~gi~ny~~lG~l~~l~~~~~ 189 (234)
T PF06833_consen 139 I--HVMG------------------------KPSAARVTKRPVEELEELAKSVPVFAPGIENYAKLGALDELWDGDL 189 (234)
T ss_pred e--ecCC------------------------hHHhHHHhhcCHHHHHHHhhcCCCcCCCHHHHHHhccHHHHhcccc
Confidence 4 3211 123566788999999887654333 34466678899999988443
No 137
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=96.30 E-value=0.01 Score=58.14 Aligned_cols=148 Identities=20% Similarity=0.273 Sum_probs=89.9
Q ss_pred EcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCC----------CcHHHHHHHHHHHHhcCCCEEEEEccccchHHH
Q 025670 63 INGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPG----------GQVTAGLAIYDTMQYIRSPINTICLGQAASMGS 132 (249)
Q Consensus 63 L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPG----------G~V~ag~aIyd~i~~~~~pV~tv~~G~AASaa~ 132 (249)
++|.|+.+.+..-..-+ .+.... .=||++..|.|| |-+.-|-.|..++-..+.|..|++.+-+..+|+
T Consensus 336 ~~G~l~~~sa~KaArFI-~~cd~~-~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~ 413 (526)
T COG4799 336 LGGVLDIDSADKAARFI-RLCDAF-NIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAY 413 (526)
T ss_pred cccccchHHHHHHHHHH-Hhhhcc-CCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEeccccccee
Confidence 36777877665554444 343322 469999999999 456778888999999999999999999998888
Q ss_pred HHHhcCC--CCcEEeccCceEeeecCCCCCCCchhhHHHHH-HHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHH
Q 025670 133 LLLASGT--KGERRALPNSTIMIHQPSGGYSGQAKDMTIHT-KQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPE 209 (249)
Q Consensus 133 ~I~~ag~--kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a-~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~ 209 (249)
+...+.. ....|+.|++++.+..|.+- ..... +++....+. .+..-.-.+.+.+..+ +.+-.+-
T Consensus 414 ~~M~~~~~~~~~~~AwP~a~iaVMG~egA-------v~i~~~k~l~~~~~~-----~~~~~~~~~~~~~eY~-~~~~~p~ 480 (526)
T COG4799 414 YVMGGKALGPDFNYAWPTAEIAVMGPEGA-------VSILYRKELAAAERP-----EEREALLRKQLIAEYE-EQFSNPY 480 (526)
T ss_pred eeecCccCCCceeEecCcceeeecCHHHH-------HHHHHHHHhhcccCc-----hhHHHHHHHHHHHHHH-HhccchH
Confidence 7776432 23567788888877654321 11111 222222111 0000001111222122 2334556
Q ss_pred HHHHcCCcceecCCCc
Q 025670 210 EAKEFGIIDEVIDQRP 225 (249)
Q Consensus 210 EA~e~GlID~I~~~~~ 225 (249)
-|-+.|+||.|++..+
T Consensus 481 ~aa~r~~iD~vI~p~~ 496 (526)
T COG4799 481 YAAERGYIDAVIDPAD 496 (526)
T ss_pred HHHHhCCCCcccCHHH
Confidence 6788999999998754
No 138
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=96.28 E-value=0.0025 Score=56.31 Aligned_cols=103 Identities=14% Similarity=0.202 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 025670 105 GLAIYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNAL 184 (249)
Q Consensus 105 g~aIyd~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ 184 (249)
...-|..|..+++||++-+-|.|..+|.=|..||+ -||+...+.|.+...-.| -+.|+. .++++-+.+
T Consensus 115 ~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcD--IRycsqDAffsvkEVDvg---laADvG----TL~RlpkvV--- 182 (292)
T KOG1681|consen 115 YQDTFTAIERCPKPVIAAVHGACIGAGVDLITACD--IRYCSQDAFFSVKEVDVG---LAADVG----TLNRLPKVV--- 182 (292)
T ss_pred HHHHHHHHHhCChhHHHHHHhhhccccccceeecc--eeeecccceeeeeeeeee---hhhchh----hHhhhhHHh---
Confidence 34455667788999999999999999999999999 599999999998776543 333432 223333221
Q ss_pred HHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCc
Q 025670 185 YCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRP 225 (249)
Q Consensus 185 ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~ 225 (249)
| +...+.++.-..+-|+|.||++.||+-+|.+.++
T Consensus 183 -----G-n~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~ 217 (292)
T KOG1681|consen 183 -----G-NQSLARELAFTARKFSADEALDSGLVSRVFPDKE 217 (292)
T ss_pred -----c-chHHHHHHHhhhhhcchhhhhhcCcchhhcCCHH
Confidence 1 2233344444456789999999999999998764
No 139
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=96.21 E-value=0.0076 Score=52.93 Aligned_cols=136 Identities=18% Similarity=0.178 Sum_probs=89.9
Q ss_pred CcchHHHHHHHHHHhhhcCCCCCeEEEEeCCC-------Cc----------H-------HHHHHHHHHHHhcCCCEEEEE
Q 025670 68 NDDTAHVVVAQLLFLESENPSKPIHMYLNSPG-------GQ----------V-------TAGLAIYDTMQYIRSPINTIC 123 (249)
Q Consensus 68 d~~~a~~i~a~L~~l~~~~~~~~I~l~INSPG-------G~----------V-------~ag~aIyd~i~~~~~pV~tv~ 123 (249)
.|.++..++..+..+..+++..-|.|-=|+-| |+ + -..+.+-..||.+++||++.|
T Consensus 44 rP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~rLnvLdlQrlIR~~PKpViA~V 123 (282)
T COG0447 44 RPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMV 123 (282)
T ss_pred CCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcccchhhHHHHHHhCCcceEEEE
Confidence 45577778888887776655555555545333 22 1 123455667899999999999
Q ss_pred ccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCC-C-chhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhc
Q 025670 124 LGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYS-G-QAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMD 201 (249)
Q Consensus 124 ~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~-G-~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~ 201 (249)
.|+|..+|-.+-+.|+ --++..|++|+=..|.-++. | --+. .+++..|+.. .++..-
T Consensus 124 ~G~AiGGGhvlhvvCD--LTiAa~nA~FgQTgp~VGSFD~G~Gs~-----------------ylar~VGqKk--ArEIwf 182 (282)
T COG0447 124 AGYAIGGGHVLHVVCD--LTIAADNAIFGQTGPKVGSFDGGYGSS-----------------YLARIVGQKK--AREIWF 182 (282)
T ss_pred eeEeccCccEEEEEee--eeeehhcchhcCCCCCcccccCcccHH-----------------HHHHHhhhhh--hHHhhh
Confidence 9999999999999998 68888999998877765432 1 1111 1222333322 122222
Q ss_pred CCcccCHHHHHHcCCcceecCCC
Q 025670 202 RDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 202 ~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
=-+.++|+||++.|+|..|+.-.
T Consensus 183 LcR~Y~A~eal~MGlVN~Vvp~~ 205 (282)
T COG0447 183 LCRQYDAEEALDMGLVNTVVPHA 205 (282)
T ss_pred hhhhccHHHHHhcCceeeeccHH
Confidence 23456999999999999987643
No 140
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=95.75 E-value=0.12 Score=47.44 Aligned_cols=126 Identities=14% Similarity=0.165 Sum_probs=83.1
Q ss_pred EEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHH----H-------HHHHHHhcCCCEEEEEccccchH
Q 025670 62 CINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGL----A-------IYDTMQYIRSPINTICLGQAASM 130 (249)
Q Consensus 62 ~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~----a-------Iyd~i~~~~~pV~tv~~G~AASa 130 (249)
|+.|.++....+.+...+..+... .-|+++...|.|+-+.+|. + ++...+.-..|.++++.|-++.+
T Consensus 144 f~gGSmG~v~geKi~ra~e~A~~~--rlPlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG 221 (296)
T CHL00174 144 FMGGSMGSVVGEKITRLIEYATNE--SLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGG 221 (296)
T ss_pred ccccCcCHHHHHHHHHHHHHHHHc--CCCEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchH
Confidence 445555555678887776655432 4699999999998765543 2 12112234579999999999888
Q ss_pred HHHHHhc-CCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccCHH
Q 025670 131 GSLLLAS-GTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMTPE 209 (249)
Q Consensus 131 a~~I~~a-g~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~lsa~ 209 (249)
++..++. |+ -+++-|++.+++-.|. ++.+.+|. .+. +-|=+++
T Consensus 222 ~aas~a~l~D--iiiae~~A~IgfAGPr--------------------------VIe~t~ge-------~lp-e~fq~ae 265 (296)
T CHL00174 222 VTASFGMLGD--IIIAEPNAYIAFAGKR--------------------------VIEQTLNK-------TVP-EGSQAAE 265 (296)
T ss_pred HHHHHHHccc--EEEEeCCeEEEeeCHH--------------------------HHHHhcCC-------cCC-cccccHH
Confidence 8887664 88 6889999999886542 12222332 112 1233788
Q ss_pred HHHHcCCcceecCCCc
Q 025670 210 EAKEFGIIDEVIDQRP 225 (249)
Q Consensus 210 EA~e~GlID~I~~~~~ 225 (249)
-.++.|+||.|+...+
T Consensus 266 ~l~~~G~vD~iV~r~~ 281 (296)
T CHL00174 266 YLFDKGLFDLIVPRNL 281 (296)
T ss_pred HHHhCcCceEEEcHHH
Confidence 8888999999988654
No 141
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=95.53 E-value=0.036 Score=48.35 Aligned_cols=103 Identities=18% Similarity=0.171 Sum_probs=65.5
Q ss_pred HHHHHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 025670 107 AIYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYC 186 (249)
Q Consensus 107 aIyd~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya 186 (249)
.+.+.||.++.||.+-+.|+|+-+|.-+.++|+ -..+..+|.|..-..-.|..-...-+. +
T Consensus 116 dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD--~vVa~k~SkF~tPG~~vGlFCSTPGvA-----l------------ 176 (287)
T KOG1682|consen 116 DVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCD--MVVATKNSKFSTPGAGVGLFCSTPGVA-----L------------ 176 (287)
T ss_pred HHHHHHhcCCCceEEEecchhhhccceEEEeee--EEEEecCccccCCCCceeeEecCcchh-----H------------
Confidence 455668888999999999999999999988887 567777776643211111111111111 0
Q ss_pred HhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCccccc
Q 025670 187 KHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRPMALV 229 (249)
Q Consensus 187 ~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~~~~~ 229 (249)
.+-.+...-..++-.+..++++||+--|++.+++...+.+..
T Consensus 177 -aRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e 218 (287)
T KOG1682|consen 177 -ARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEELDKE 218 (287)
T ss_pred -hhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHHH
Confidence 011233333334444566799999999999999987664443
No 142
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=95.15 E-value=0.075 Score=46.77 Aligned_cols=130 Identities=16% Similarity=0.210 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhhhcCCCCCeEEEEeCCCC--------------------cHHHHHHHHHHHHhcCCCEEEEEccccchHH
Q 025670 72 AHVVVAQLLFLESENPSKPIHMYLNSPGG--------------------QVTAGLAIYDTMQYIRSPINTICLGQAASMG 131 (249)
Q Consensus 72 a~~i~a~L~~l~~~~~~~~I~l~INSPGG--------------------~V~ag~aIyd~i~~~~~pV~tv~~G~AASaa 131 (249)
.+.+...|..+..+++..-+.|.=-+||= .|..-..+++.|..++.||++-+.|.|..+|
T Consensus 60 ~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGG 139 (291)
T KOG1679|consen 60 VKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGG 139 (291)
T ss_pred HHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccc
Confidence 34455555666666655555555556773 2445566778888899999999999999999
Q ss_pred HHHHhcCCCCcEEeccCceEeeecCCC----CCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhhcCCcccC
Q 025670 132 SLLLASGTKGERRALPNSTIMIHQPSG----GYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNMDRDYFMT 207 (249)
Q Consensus 132 ~~I~~ag~kg~R~a~p~s~imiHqp~~----~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~d~~ls 207 (249)
-=++++|| -|.+..++.+++-.-.. |..|+ .- +- ++ .|. ..-.++.-....|+
T Consensus 140 LElALACD--iRva~s~akmGLvET~laiiPGaGGt-QR----------Lp----R~----vg~--alaKELIftarvl~ 196 (291)
T KOG1679|consen 140 LELALACD--IRVAASSAKMGLVETKLAIIPGAGGT-QR----------LP----RI----VGV--ALAKELIFTARVLN 196 (291)
T ss_pred hhhhhhcc--ceehhhhccccccccceeeecCCCcc-ch----------hH----HH----HhH--HHHHhHhhhheecc
Confidence 99999999 59999999888754321 22231 11 11 11 111 22234455578899
Q ss_pred HHHHHHcCCcceecCCC
Q 025670 208 PEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 208 a~EA~e~GlID~I~~~~ 224 (249)
+.||.++|+|..+++..
T Consensus 197 g~eA~~lGlVnhvv~qn 213 (291)
T KOG1679|consen 197 GAEAAKLGLVNHVVEQN 213 (291)
T ss_pred chhHHhcchHHHHHhcC
Confidence 99999999999998865
No 143
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=94.89 E-value=0.18 Score=50.22 Aligned_cols=91 Identities=18% Similarity=0.178 Sum_probs=63.6
Q ss_pred EEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHH---H-------HHHHH-HHHHhc--CCCEEEEEccccc
Q 025670 62 CINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVT---A-------GLAIY-DTMQYI--RSPINTICLGQAA 128 (249)
Q Consensus 62 ~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~---a-------g~aIy-d~i~~~--~~pV~tv~~G~AA 128 (249)
+++|.+++..++.+...+..... . .-||+..++|+|+.+. . .-.|+ +..+.+ ..|.++++.|-|+
T Consensus 140 v~GGs~g~~~~~Ki~r~~elA~~-~-~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~ 217 (569)
T PLN02820 140 VKGGTYYPITVKKHLRAQEIAAQ-C-RLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCT 217 (569)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHH-c-CCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence 34566666677888776665443 2 4699999999998761 1 11243 333323 4799999999999
Q ss_pred hHHHHHHhcCCCCcEEe-ccCceEeeecC
Q 025670 129 SMGSLLLASGTKGERRA-LPNSTIMIHQP 156 (249)
Q Consensus 129 Saa~~I~~ag~kg~R~a-~p~s~imiHqp 156 (249)
++++++...++ ..++ -+++.+.+-.|
T Consensus 218 gGgAy~~a~~D--~vim~~~~a~i~~aGP 244 (569)
T PLN02820 218 AGGAYVPAMAD--ESVIVKGNGTIFLAGP 244 (569)
T ss_pred hHHHHHHHhCC--ceEEecCCcEEEecCH
Confidence 99999987777 4555 56788888766
No 144
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=92.72 E-value=0.53 Score=44.29 Aligned_cols=91 Identities=20% Similarity=0.224 Sum_probs=64.3
Q ss_pred CcEEEEcce-----eCcchHHHHHHHHHHhhhcCCCCCeEEEEe-----CCCCcHHHH-------------------HHH
Q 025670 58 ERIICINGP-----INDDTAHVVVAQLLFLESENPSKPIHMYLN-----SPGGQVTAG-------------------LAI 108 (249)
Q Consensus 58 ~riI~L~g~-----Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN-----SPGG~V~ag-------------------~aI 108 (249)
.|+|.|+-| ++-++...+...|..++..+..+-|+|-=+ |-||+|.+. -.+
T Consensus 48 ~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYsl 127 (401)
T KOG1684|consen 48 ARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYSL 127 (401)
T ss_pred eeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 589999877 777888888889998887665554444334 457885432 122
Q ss_pred HHHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCce
Q 025670 109 YDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNST 150 (249)
Q Consensus 109 yd~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~ 150 (249)
..+|-...+|+++++.|+.+.+|.=|...|. .|++...+.
T Consensus 128 ~~~igtY~KP~ValmdGITMGgG~GLS~hg~--fRVATerT~ 167 (401)
T KOG1684|consen 128 NHLIGTYLKPYVALMDGITMGGGVGLSVHGR--FRVATERTV 167 (401)
T ss_pred HHHHHHhcCceEEEeeceeecCCcceeecce--eEEeeccce
Confidence 2334556799999999999999998888776 676665553
No 145
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=91.91 E-value=1 Score=44.36 Aligned_cols=92 Identities=16% Similarity=0.171 Sum_probs=65.6
Q ss_pred EEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHH-------HHH-HHHHh-cCCCEEEEEccccchHHH
Q 025670 62 CINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGL-------AIY-DTMQY-IRSPINTICLGQAASMGS 132 (249)
Q Consensus 62 ~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~-------aIy-d~i~~-~~~pV~tv~~G~AASaa~ 132 (249)
|+.|.++....+.+...+..+.. . .-|++.+++|.|+.+..+. .++ ...+. -..|.++++.|-|+.+++
T Consensus 93 ~~gGS~g~~~~~K~~r~~e~A~~-~-~lPlV~l~dSgGarm~eg~~~l~~~~~~~~~~~~~s~~iP~Isvv~G~~~GG~a 170 (512)
T TIGR01117 93 VMGGSLGEMHAAKIVKIMDLAMK-M-GAPVVGLNDSGGARIQEAVDALKGYGDIFYRNTIASGVVPQISAIMGPCAGGAV 170 (512)
T ss_pred ccccCCCHHHHHHHHHHHHHHHH-c-CCCEEEEecCCCCCccccchhhhhHHHHHHHHHHHcCCCcEEEEEecCCCcHHH
Confidence 44555666677888776665543 2 4699999999998764432 222 22222 347999999999999999
Q ss_pred HHHhcCCCCcEEeccC-ceEeeecCC
Q 025670 133 LLLASGTKGERRALPN-STIMIHQPS 157 (249)
Q Consensus 133 ~I~~ag~kg~R~a~p~-s~imiHqp~ 157 (249)
+.+..+| .++|.++ +.+.+-.|.
T Consensus 171 ~~~al~D--~vim~~~~a~i~~aGP~ 194 (512)
T TIGR01117 171 YSPALTD--FIYMVDNTSQMFITGPQ 194 (512)
T ss_pred HHHHhcC--ceEEeccceEEEecChH
Confidence 9999888 7999997 467776663
No 146
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=89.45 E-value=0.76 Score=44.97 Aligned_cols=92 Identities=14% Similarity=0.286 Sum_probs=63.7
Q ss_pred EEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCC--cHHHHH-------HHHHHH-Hh-cCCCEEEEEccccchH
Q 025670 62 CINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGG--QVTAGL-------AIYDTM-QY-IRSPINTICLGQAASM 130 (249)
Q Consensus 62 ~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG--~V~ag~-------aIyd~i-~~-~~~pV~tv~~G~AASa 130 (249)
++.|.+++.....+...+...... .-|++.+++|.|+ ....++ .++..+ +. -..|+.+++.|-|..+
T Consensus 68 ~~gGs~g~~~~~Ki~ra~~~A~~~--~~P~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg 145 (493)
T PF01039_consen 68 VLGGSVGEVHGEKIARAIELALEN--GLPLVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGG 145 (493)
T ss_dssp SGGGTBSHHHHHHHHHHHHHHHHH--TEEEEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGG
T ss_pred eecCCCCcccceeeehHHHHHHHc--CCCcEEeccccccccccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccc
Confidence 345666676778887776655543 4689999999999 332221 222222 21 2689999999999999
Q ss_pred HHHHHhcCCCCcEEeccC-ceEeeecCC
Q 025670 131 GSLLLASGTKGERRALPN-STIMIHQPS 157 (249)
Q Consensus 131 a~~I~~ag~kg~R~a~p~-s~imiHqp~ 157 (249)
+++++..++ ..++.+. +.+.+..|.
T Consensus 146 ~A~~~~~~d--~~i~~~~~a~i~l~GP~ 171 (493)
T PF01039_consen 146 GAYLAALSD--FVIMVKGTARIFLAGPR 171 (493)
T ss_dssp GGHHHHHSS--EEEEETTTCEEESSTHH
T ss_pred hhhcccccC--ccccCccceEEEecccc
Confidence 998888888 6888887 999887663
No 147
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=89.39 E-value=2.8 Score=35.94 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=56.3
Q ss_pred EEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEE-eCCCCcHHHHHHHHHHHHh--------------------------
Q 025670 62 CINGPINDDTAHVVVAQLLFLESENPSKPIHMYL-NSPGGQVTAGLAIYDTMQY-------------------------- 114 (249)
Q Consensus 62 ~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~I-NSPGG~V~ag~aIyd~i~~-------------------------- 114 (249)
.|..-..+...+.+.+.+..+.. +.+.++|-+ +-|||++..+..+.+.+-.
T Consensus 65 ~i~~f~~~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (224)
T cd06567 65 RIPSFSAESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGGNETEYVAPGGGSL 142 (224)
T ss_pred EECccCCcchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecCCCceeEEecCCCCcc
Confidence 33333335566777777776665 478899988 8899999999988888652
Q ss_pred cCCCEEEEEccccchHHHHHHhcC
Q 025670 115 IRSPINTICLGQAASMGSLLLASG 138 (249)
Q Consensus 115 ~~~pV~tv~~G~AASaa~~I~~ag 138 (249)
...||++.+.+..+|+|-+++.+-
T Consensus 143 ~~~pv~vL~~~~taSaaE~~a~~l 166 (224)
T cd06567 143 YDGPLVVLVNEGSASASEIFAGAL 166 (224)
T ss_pred cCCCEEEEECCCCccHHHHHHHHH
Confidence 236899999999999998888653
No 148
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=89.34 E-value=2.9 Score=36.21 Aligned_cols=88 Identities=25% Similarity=0.340 Sum_probs=60.3
Q ss_pred chhhhhccCcEEEEc-ceeCcchHHHHHHHHHHhhhcCCCCCeEEEE-eCCCCcHHHHHHHHHHHHh-------------
Q 025670 50 DIFSRLLKERIICIN-GPINDDTAHVVVAQLLFLESENPSKPIHMYL-NSPGGQVTAGLAIYDTMQY------------- 114 (249)
Q Consensus 50 di~~~l~~~riI~L~-g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~I-NSPGG~V~ag~aIyd~i~~------------- 114 (249)
|-|++++.. |-+|. ...+....+.+.+.|..+...+ .+.++|-+ +.+||++..+..|...+-.
T Consensus 41 ~~~~~~~~~-igYi~i~sf~~~~~~~~~~~l~~~~~~~-~~~lIlDLR~N~GG~~~~~~~i~~~f~~~~~~~~~~~~~g~ 118 (211)
T cd07560 41 DPYSRYLTP-IGYIRITSFSENTAEELKKALKELKKQG-MKGLILDLRNNPGGLLDEAVEIADLFLPGGPIVSTKGRNGK 118 (211)
T ss_pred CCcceeeCc-eEEEEEcccCchhHHHHHHHHHHHHhcc-CceEEEEcCCCCCCCHHHHHHHHHHhcCCCeEEEEEecCCc
Confidence 444454443 33332 1134456677877787777644 67888888 7789999998888765431
Q ss_pred -----------cCCCEEEEEccccchHHHHHHhcCC
Q 025670 115 -----------IRSPINTICLGQAASMGSLLLASGT 139 (249)
Q Consensus 115 -----------~~~pV~tv~~G~AASaa~~I~~ag~ 139 (249)
...||++.+.+..+|+|-+++.+-.
T Consensus 119 ~~~~~~~~~~~~~~pvvVLvn~~TaSaaE~~a~~lk 154 (211)
T cd07560 119 REAYASDDGGLYDGPLVVLVNGGSASASEIVAGALQ 154 (211)
T ss_pred eEEEecCCCccCCCCEEEEeCCCcccHHHHHHHHHh
Confidence 3468999999999999988886543
No 149
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=88.51 E-value=1.7 Score=39.10 Aligned_cols=98 Identities=17% Similarity=0.189 Sum_probs=61.7
Q ss_pred HHHHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 025670 108 IYDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCK 187 (249)
Q Consensus 108 Iyd~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~ 187 (249)
..++.-.+++|+++.+.|-|-..|+.|+--+| ..++...+. +|.|.... |+..|--... . +-.
T Consensus 99 ~v~~fi~f~Kplia~vNGPAIGlgasil~lcD--~V~A~Dka~--F~TPfa~l-Gq~PEG~Ss~--------t----~p~ 161 (266)
T KOG0016|consen 99 FVNTFINFPKPLVALVNGPAIGLGASILPLCD--YVWASDKAW--FQTPFAKL-GQSPEGCSSV--------T----LPK 161 (266)
T ss_pred HHHHHhcCCCCEEEEecCCccchhhHHhhhhh--eEEeccceE--Eeccchhc-CCCCCcceee--------e----ehH
Confidence 45777778999999999999999999998888 577765444 46665321 2222110000 0 000
Q ss_pred hhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCC
Q 025670 188 HTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQR 224 (249)
Q Consensus 188 ~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~ 224 (249)
..| ...-.+++=-..-|+|+||.+.|||++|....
T Consensus 162 imG--~~~A~E~ll~~~kltA~Ea~~~glVskif~~~ 196 (266)
T KOG0016|consen 162 IMG--SASANEMLLFGEKLTAQEACEKGLVSKIFPAE 196 (266)
T ss_pred hhc--hhhHHHHHHhCCcccHHHHHhcCchhhhcChH
Confidence 111 12222333335678999999999999998753
No 150
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=85.58 E-value=4 Score=37.63 Aligned_cols=72 Identities=21% Similarity=0.244 Sum_probs=55.7
Q ss_pred eCcchHHHHHHHHHHhhhcCCCCCeEEEE-eCCCCcHHHHHHHHHHHH------------------------hcCCCEEE
Q 025670 67 INDDTAHVVVAQLLFLESENPSKPIHMYL-NSPGGQVTAGLAIYDTMQ------------------------YIRSPINT 121 (249)
Q Consensus 67 Id~~~a~~i~a~L~~l~~~~~~~~I~l~I-NSPGG~V~ag~aIyd~i~------------------------~~~~pV~t 121 (249)
.+....+.+.+.|..++..+ .+.++|-+ +.|||++..+..+.+.+- ....||++
T Consensus 161 f~~~~~~~~~~~l~~l~~~~-~~~lIiDLR~N~GG~~~~a~~~a~~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~pv~v 239 (334)
T TIGR00225 161 FSEHTTEDVKKALDKLEKKN-AKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTKDRNGSKRHYKANGRQPYNLPLVV 239 (334)
T ss_pred cccchHHHHHHHHHHHHhcc-CceEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEEcCCCcceEEecCCCccCCCCEEE
Confidence 34556778888888776543 67899998 889999999988888652 12458999
Q ss_pred EEccccchHHHHHHhcCC
Q 025670 122 ICLGQAASMGSLLLASGT 139 (249)
Q Consensus 122 v~~G~AASaa~~I~~ag~ 139 (249)
.+.+..||+|-+++.+-.
T Consensus 240 Lvn~~TaSaaE~~a~~l~ 257 (334)
T TIGR00225 240 LVNRGSASASEIFAGALQ 257 (334)
T ss_pred EECCCCCcHHHHHHHHHH
Confidence 999999999988887543
No 151
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=82.90 E-value=5.9 Score=37.55 Aligned_cols=78 Identities=19% Similarity=0.270 Sum_probs=57.5
Q ss_pred cEEEEcc-eeCcchHHHHHHHHHHhhhcCCCCCeEEEE-eCCCCcHHHHHHHHHHHHh----------------------
Q 025670 59 RIICING-PINDDTAHVVVAQLLFLESENPSKPIHMYL-NSPGGQVTAGLAIYDTMQY---------------------- 114 (249)
Q Consensus 59 riI~L~g-~Id~~~a~~i~a~L~~l~~~~~~~~I~l~I-NSPGG~V~ag~aIyd~i~~---------------------- 114 (249)
+|-+|.- ..+...+..+.+.|..+...+ .+.++|-+ |-|||.+..+..|.+.+-.
T Consensus 195 ~IgYi~i~~F~~~~~~~~~~~l~~l~~~~-~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~~~~~~~~~~~~~~~~ 273 (389)
T PLN00049 195 KIGYIKLTTFNQNASSAVKEAIETLRANG-VDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIADSRGVRDIYDADGS 273 (389)
T ss_pred CEEEEEeccccchhHHHHHHHHHHHHHCC-CCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCceeEEecCCC
Confidence 4555442 234556778888888887654 67899988 8899999999999887621
Q ss_pred ----cCCCEEEEEccccchHHHHHHhc
Q 025670 115 ----IRSPINTICLGQAASMGSLLLAS 137 (249)
Q Consensus 115 ----~~~pV~tv~~G~AASaa~~I~~a 137 (249)
...|+++.+.+..||++-+++.+
T Consensus 274 ~~~~~~~PvvVLvn~~TaSasEi~a~a 300 (389)
T PLN00049 274 SAIATSEPLAVLVNKGTASASEILAGA 300 (389)
T ss_pred ccccCCCCEEEEECCCCccHHHHHHHH
Confidence 12588889999999999888754
No 152
>PRK11186 carboxy-terminal protease; Provisional
Probab=82.05 E-value=5.7 Score=40.53 Aligned_cols=68 Identities=22% Similarity=0.274 Sum_probs=53.8
Q ss_pred cchHHHHHHHHHHhhhcCCCCCeEEEE-eCCCCcHHHHHHHHHHHH-------------------------hcCCCEEEE
Q 025670 69 DDTAHVVVAQLLFLESENPSKPIHMYL-NSPGGQVTAGLAIYDTMQ-------------------------YIRSPINTI 122 (249)
Q Consensus 69 ~~~a~~i~a~L~~l~~~~~~~~I~l~I-NSPGG~V~ag~aIyd~i~-------------------------~~~~pV~tv 122 (249)
....+.+...|..+..+ +.+.++|-+ |-|||++..+..|.+.+- ....|+++.
T Consensus 365 ~~~~~d~~~~l~~l~~~-~v~gLIlDLR~NgGG~l~~a~~la~lFi~~g~vv~~~~~~g~~~~~~~~~~~~~~~gPlvVL 443 (667)
T PRK11186 365 VGLTDDVKKQLQKLEKQ-NVSGIIIDLRGNGGGALTEAVSLSGLFIPSGPVVQVRDNNGRVRVDSDTDGVVYYKGPLVVL 443 (667)
T ss_pred cchHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCcHHHHHHHHHHHhcCCceEEEecCCCceeccccCCcccccCCCEEEE
Confidence 34577788888888764 478899999 889999999999888642 113589999
Q ss_pred EccccchHHHHHHhc
Q 025670 123 CLGQAASMGSLLLAS 137 (249)
Q Consensus 123 ~~G~AASaa~~I~~a 137 (249)
+.+..||++-+++.+
T Consensus 444 VN~~SASASEIfA~a 458 (667)
T PRK11186 444 VDRYSASASEIFAAA 458 (667)
T ss_pred eCCCCccHHHHHHHH
Confidence 999999999888853
No 153
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=80.35 E-value=7 Score=37.41 Aligned_cols=79 Identities=19% Similarity=0.237 Sum_probs=61.2
Q ss_pred EEEEcce-eCcchHHHHHHHHHHhhhcCCCCCeEEEE-eCCCCcHHHHHHHHHHHHh-----------------------
Q 025670 60 IICINGP-INDDTAHVVVAQLLFLESENPSKPIHMYL-NSPGGQVTAGLAIYDTMQY----------------------- 114 (249)
Q Consensus 60 iI~L~g~-Id~~~a~~i~a~L~~l~~~~~~~~I~l~I-NSPGG~V~ag~aIyd~i~~----------------------- 114 (249)
|-+|.=+ .+....+.+..+|..|+++. .+.++|-+ |-|||...++..+.+..-.
T Consensus 205 IGyI~I~~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~ 283 (406)
T COG0793 205 IGYIRIPSFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGE 283 (406)
T ss_pred EEEEEecccccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeeccccccc
Confidence 4444422 34456777888888888866 88999999 8999999999999988651
Q ss_pred --cCCCEEEEEccccchHHHHHHhcCC
Q 025670 115 --IRSPINTICLGQAASMGSLLLASGT 139 (249)
Q Consensus 115 --~~~pV~tv~~G~AASaa~~I~~ag~ 139 (249)
...|+++.+.+..||++=+++-+-.
T Consensus 284 ~~~~~PlvvLvn~~SASAsEI~agalq 310 (406)
T COG0793 284 ALYDGPLVVLVNEGSASASEIFAGALQ 310 (406)
T ss_pred cCCCCCEEEEECCCCccHHHHHHHHHH
Confidence 1368999999999999988886543
No 154
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=80.32 E-value=9.7 Score=34.02 Aligned_cols=46 Identities=9% Similarity=0.107 Sum_probs=36.5
Q ss_pred CcchHHHHHHHHHHhhhcCCCCCeEEEE-eCCCCcHHHHHHHHHHHHh
Q 025670 68 NDDTAHVVVAQLLFLESENPSKPIHMYL-NSPGGQVTAGLAIYDTMQY 114 (249)
Q Consensus 68 d~~~a~~i~a~L~~l~~~~~~~~I~l~I-NSPGG~V~ag~aIyd~i~~ 114 (249)
.....+.+.+.+..+..++ .+.++|-+ +-|||.+..+..|.+.+-.
T Consensus 75 ~~~~~~~l~~a~~~l~~~~-~~~LIlDLR~N~GG~~~~a~~las~f~~ 121 (256)
T cd07561 75 TSGYDDELNQAFAEFKAQG-VTELVLDLRYNGGGLVSSANLLASLLAP 121 (256)
T ss_pred ccchHHHHHHHHHHHHHcC-CCeEEEEeCCCCCccHHHHHHHHHHhcC
Confidence 3446778888888887654 67888888 8899999999999887754
No 155
>smart00245 TSPc tail specific protease. tail specific protease
Probab=77.47 E-value=15 Score=30.93 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=53.5
Q ss_pred eCcchHHHHHHHHHHhhhcCCCCCeEEEE-eCCCCcHHHHHHHHHHHHh-------------------------cCCCEE
Q 025670 67 INDDTAHVVVAQLLFLESENPSKPIHMYL-NSPGGQVTAGLAIYDTMQY-------------------------IRSPIN 120 (249)
Q Consensus 67 Id~~~a~~i~a~L~~l~~~~~~~~I~l~I-NSPGG~V~ag~aIyd~i~~-------------------------~~~pV~ 120 (249)
.+..+.+.+...+..+... +.+.++|-+ +.+||.+..+..+.+.+-. ...||+
T Consensus 38 f~~~~~~~~~~~~~~l~~~-~~~~lIiDLR~N~GG~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~ 116 (192)
T smart00245 38 FSEHTSNLVEKAWKKLEKT-NVEGLILDLRNNPGGLLSAAIDVSSLFLDKGVIVYTIYRRTGELETYPANLGRKYSKPLV 116 (192)
T ss_pred EChhhHHHHHHHHHHHHhC-CCcEEEEEecCCCCCCHHHHHHHHHHhcCCCcEEEEEecCCCceEEEecCCCcccCCCEE
Confidence 4444667777778878764 368888888 6699999999988887621 024788
Q ss_pred EEEccccchHHHHHHhcCC
Q 025670 121 TICLGQAASMGSLLLASGT 139 (249)
Q Consensus 121 tv~~G~AASaa~~I~~ag~ 139 (249)
+.+.+..+|+|-+++.+-.
T Consensus 117 vL~~~~TaSaaE~~a~~lk 135 (192)
T smart00245 117 VLVNEGTASASEIFAGALK 135 (192)
T ss_pred EEECCCCeeHHHHHHHHHh
Confidence 8888889999988876543
No 156
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=76.66 E-value=3.8 Score=34.16 Aligned_cols=43 Identities=23% Similarity=0.466 Sum_probs=28.9
Q ss_pred EEEEcceeCcchHHHHHH---HHHHhhhcCCCCCeEEEEeCCCCcHHH
Q 025670 60 IICINGPINDDTAHVVVA---QLLFLESENPSKPIHMYLNSPGGQVTA 104 (249)
Q Consensus 60 iI~L~g~Id~~~a~~i~a---~L~~l~~~~~~~~I~l~INSPGG~V~a 104 (249)
++-+.|.|+-.-++.+.. .++... .+...+.|.+-||||-|.+
T Consensus 102 VldF~Gdi~A~~v~~LReeisail~~a--~~~DeV~~rLES~GG~Vh~ 147 (155)
T PF08496_consen 102 VLDFKGDIKASEVESLREEISAILSVA--TPEDEVLVRLESPGGMVHG 147 (155)
T ss_pred EEecCCCccHHHHHHHHHHHHHHHHhC--CCCCeEEEEEecCCceeec
Confidence 567789998765444333 333333 3357899999999998753
No 157
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=75.13 E-value=15 Score=29.41 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHhhhcCCCCCeEEEE-eCCCCcHHHHHHHHHHHHh-----------------------------cCCCE
Q 025670 70 DTAHVVVAQLLFLESENPSKPIHMYL-NSPGGQVTAGLAIYDTMQY-----------------------------IRSPI 119 (249)
Q Consensus 70 ~~a~~i~a~L~~l~~~~~~~~I~l~I-NSPGG~V~ag~aIyd~i~~-----------------------------~~~pV 119 (249)
...+.+.+.+..+.. .+.+.++|-| +.|||+...+..+...+.. ...||
T Consensus 15 ~~~~~~~~~~~~~~~-~~~~~lIIDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (169)
T PF03572_consen 15 SFDEELDEFLDKLKS-KDTDGLIIDLRGNGGGSDEYAIELLSYLIPKPIIFYYRDRIGSNKKWVSTIKWSTPKNRFNGPV 93 (169)
T ss_dssp HHHHHHHHHHHHHHH-TTSSEEEEE-TTB--BSHHHHHHHHHCHSSSSEEEEEEEEEEEETTCCHEEEECSSTT-SSSEE
T ss_pred ccHHHHHHHHHHHHH-CCCCEEEEEcccCCCcchHHHHHHHhcccCCCcEEEEecccccccccccCCCCccccccCCCCE
Confidence 345566666666664 4478899999 8889999998888876541 23578
Q ss_pred EEEEccccchHHHHHHhcC
Q 025670 120 NTICLGQAASMGSLLLASG 138 (249)
Q Consensus 120 ~tv~~G~AASaa~~I~~ag 138 (249)
.+++.+.++|+|-+++.+.
T Consensus 94 ~vL~~~~t~Saae~fa~~l 112 (169)
T PF03572_consen 94 YVLTDENTASAAEIFASAL 112 (169)
T ss_dssp EEEE-TTBBTHHHHHHHHH
T ss_pred EEEeCCCCCChhHHHHHHH
Confidence 9999999999999888643
No 158
>PHA00099 minor capsid protein
Probab=74.86 E-value=27 Score=28.35 Aligned_cols=82 Identities=13% Similarity=0.128 Sum_probs=47.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHH---HHHhhCCCHHHHHhhhcCCcccCHHHHHHcCCcceecCCCccccccccccCCCcC
Q 025670 163 QAKDMTIHTKQIVRVWDALNAL---YCKHTGQSIEVIQKNMDRDYFMTPEEAKEFGIIDEVIDQRPMALVTDAVGREGKE 239 (249)
Q Consensus 163 ~~~di~~~a~~l~~~~~~~~~~---ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~GlID~I~~~~~~~~~~~~~~~~~~~ 239 (249)
.+-|.....+.+.+.++.|..+ +.++.|-+++++.+.+.+..- -+||+.+||+ -+-++..++--.-......+.
T Consensus 59 sp~D~qeAl~~V~~~qeaFdsLPA~iR~~F~NdP~eml~~L~dp~N--ydEa~~LGl~-~~~~p~~apq~~~~~~~~~~~ 135 (147)
T PHA00099 59 SPMDYQEALNVVIEAQEAFDSLPAKIRERFGNDPEEMLDFLSDPEN--YDEAKALGLV-YEDGPSGAPQTFFEAQPKDDQ 135 (147)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhHHHHHHhCCCHHHHHHHHcChhh--HHHHHhccee-eecCcccccchhhhcCCCCcc
Confidence 4455555555555555555443 556778888888777765432 3799999999 333333332223333344445
Q ss_pred CccccccC
Q 025670 240 GKEGKEKG 247 (249)
Q Consensus 240 ~~~~~~~~ 247 (249)
.-+|.|+|
T Consensus 136 ~vs~ee~~ 143 (147)
T PHA00099 136 NVSNEEPG 143 (147)
T ss_pred cccCCCCC
Confidence 55666665
No 159
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=69.76 E-value=41 Score=32.89 Aligned_cols=86 Identities=20% Similarity=0.222 Sum_probs=56.0
Q ss_pred ceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCC----------CcHHHHHHHHHHHHhcCCCEEEEEccccchHHHHH
Q 025670 65 GPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPG----------GQVTAGLAIYDTMQYIRSPINTICLGQAASMGSLL 134 (249)
Q Consensus 65 g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPG----------G~V~ag~aIyd~i~~~~~pV~tv~~G~AASaa~~I 134 (249)
|.++.+++.....-+.+-.+. .-|+.+..|+|| |-.-.|-.+.++....+.|..|++.|-+..+.+=+
T Consensus 363 G~L~s~sa~KgarfIe~c~q~--~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syGG~y~m 440 (536)
T KOG0540|consen 363 GVLFSESAVKGARFIELCDQR--NIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYGGNYAM 440 (536)
T ss_pred cccchhhhhhhHHHHHHHHhc--CCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccCCcccc
Confidence 555666666665555544432 468999999998 22334445555666667899999988888743331
Q ss_pred ---HhcCCCCcEEeccCceEeee
Q 025670 135 ---LASGTKGERRALPNSTIMIH 154 (249)
Q Consensus 135 ---~~ag~kg~R~a~p~s~imiH 154 (249)
.+.|+ -.|+-|||+|.+.
T Consensus 441 ~sr~~~gd--~~yawP~A~Iavm 461 (536)
T KOG0540|consen 441 CSRGYSGD--INYAWPNARIAVM 461 (536)
T ss_pred cccccCCc--eeEEcccceeeec
Confidence 12344 5899999998764
No 160
>PLN02522 ATP citrate (pro-S)-lyase
Probab=68.63 E-value=57 Score=33.07 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=45.7
Q ss_pred cEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHh--cCCCEEEEEccccc
Q 025670 59 RIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQY--IRSPINTICLGQAA 128 (249)
Q Consensus 59 riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~--~~~pV~tv~~G~AA 128 (249)
.+|-+++..+..+ .+.+-|.++..++..+.|.||+-=-|. ++....+.++. .++||++++.|..+
T Consensus 196 ~~VsiGnd~~~g~--~~~D~L~~~~~Dp~Tk~IvlygEiGg~---~e~~f~ea~~~a~~~KPVVa~kaGrsa 262 (608)
T PLN02522 196 EGIAIGGDVFPGS--TLSDHVLRFNNIPQIKMIVVLGELGGR---DEYSLVEALKQGKVSKPVVAWVSGTCA 262 (608)
T ss_pred EEEEeCCCCCCCC--CHHHHHHHHhcCCCCCEEEEEEecCch---hHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 4788888665444 456777888888888889888873333 33444455554 57999999999877
No 161
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=68.49 E-value=32 Score=30.09 Aligned_cols=64 Identities=11% Similarity=0.034 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhhcCCCCCeEEEE-eCCCCcHHHHHHHHHHHHh---------------------------------cCC
Q 025670 72 AHVVVAQLLFLESENPSKPIHMYL-NSPGGQVTAGLAIYDTMQY---------------------------------IRS 117 (249)
Q Consensus 72 a~~i~a~L~~l~~~~~~~~I~l~I-NSPGG~V~ag~aIyd~i~~---------------------------------~~~ 117 (249)
.+.+-+.+..+.. .+.++|-+ +.+||+...+..|...+-. .+.
T Consensus 82 ~~~~~~~~~~l~~---~~~LIIDLR~N~GG~~~~~~~l~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (250)
T cd07563 82 EALLDEALDKLAD---TDALIIDLRYNGGGSDSLVAYLASYFTDEDKPVHLYTIYKRPGNTTTELWTLPVVPGGRYGYTK 158 (250)
T ss_pred HHHHHHHHHHhcC---CCeEEEEECCCCCCCHHHHHHHHHHcCCCCCcEEEEEEEECCCCCCcccceeeecCCCcccCCC
Confidence 3444444554443 37788888 7789999888888777640 125
Q ss_pred CEEEEEccccchHHHHHHhcC
Q 025670 118 PINTICLGQAASMGSLLLASG 138 (249)
Q Consensus 118 pV~tv~~G~AASaa~~I~~ag 138 (249)
||++.+.+.++|+|-.++.+-
T Consensus 159 pv~vL~~~~T~SaaE~~a~~l 179 (250)
T cd07563 159 PVYVLTSPVTFSAAEEFAYAL 179 (250)
T ss_pred CEEEEeCCCcCcHHHHHHHHH
Confidence 789999999999998887654
No 162
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=66.34 E-value=42 Score=29.76 Aligned_cols=80 Identities=21% Similarity=0.257 Sum_probs=50.1
Q ss_pred hhccCcEEEEcce-eCcchHHHHHHHHHHhhhcCCCCCeEEEE-eCCCCcHHHHHHHHHHHHh-----------------
Q 025670 54 RLLKERIICINGP-INDDTAHVVVAQLLFLESENPSKPIHMYL-NSPGGQVTAGLAIYDTMQY----------------- 114 (249)
Q Consensus 54 ~l~~~riI~L~g~-Id~~~a~~i~a~L~~l~~~~~~~~I~l~I-NSPGG~V~ag~aIyd~i~~----------------- 114 (249)
++..++|-+|.-+ .+++....+...++ .+...+.++|-+ +-+||++.. .|.+.+..
T Consensus 83 ~~~~~~igYi~i~~~~~~~~~~~~~~~~---~~~~~~glIiDlR~N~GG~~~~--~l~~~~~~~~~~~~~~r~~~~~~~~ 157 (266)
T cd07562 83 ELSDGRIGYVHIPDMGDDGFAEFLRDLL---AEVDKDGLIIDVRFNGGGNVAD--LLLDFLSRRRYGYDIPRGGGKPVTY 157 (266)
T ss_pred HhcCCcEEEEEeCCCChHHHHHHHHHHH---hcCCCceEEEEecCCCCCcHHH--HHHHHhCCCceEEEccCCCCCCCCC
Confidence 3444666666533 23344444444443 332268899988 778888543 34444321
Q ss_pred ----cCCCEEEEEccccchHHHHHHhcC
Q 025670 115 ----IRSPINTICLGQAASMGSLLLASG 138 (249)
Q Consensus 115 ----~~~pV~tv~~G~AASaa~~I~~ag 138 (249)
.+.||.+.+.+.++|+|-+++.+-
T Consensus 158 p~~~~~~pv~vL~~~~t~SaaE~~a~~l 185 (266)
T cd07562 158 PSGRWRGPVVVLVNEGSASDAEIFAYGF 185 (266)
T ss_pred cccccCCCEEEEECCCCCchHHHHHHHH
Confidence 247999999999999999888654
No 163
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=63.15 E-value=27 Score=32.07 Aligned_cols=67 Identities=18% Similarity=0.323 Sum_probs=47.2
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHH-HHHHHhcCCCEEEEEccccchHHHHHHhcCCCCcEEeccCceEe
Q 025670 74 VVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAI-YDTMQYIRSPINTICLGQAASMGSLLLASGTKGERRALPNSTIM 152 (249)
Q Consensus 74 ~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aI-yd~i~~~~~pV~tv~~G~AASaa~~I~~ag~kg~R~a~p~s~im 152 (249)
.+++.|..++. |+.....+.|-=+||...+-.+- +.. +..++||++++.|..| .+|+|+..-.|.+.
T Consensus 187 ~fid~L~~fe~-Dp~T~~ivmiGEiGG~aEe~AA~~i~~-~~~~KPVVa~iaG~ta----------p~gkrmGhaGaiv~ 254 (293)
T COG0074 187 SFIDALEMFEA-DPETEAIVMIGEIGGPAEEEAAEYIKA-NATRKPVVAYIAGRTA----------PEGKRMGHAGAIVS 254 (293)
T ss_pred cHHHHHHHHhc-CccccEEEEEecCCCcHHHHHHHHHHH-hccCCCEEEEEeccCC----------Cccchhhhhhhhhc
Confidence 45566666664 55778889999999986543322 222 4456999999999988 66677776666664
No 164
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=62.96 E-value=22 Score=32.74 Aligned_cols=65 Identities=15% Similarity=0.112 Sum_probs=51.4
Q ss_pred cEEEEcce--eCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEEccccc
Q 025670 59 RIICINGP--INDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQAA 128 (249)
Q Consensus 59 riI~L~g~--Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~~~pV~tv~~G~AA 128 (249)
.+|-++.. .|- .+.+.|.|+..++..+.|.||+-+-|-.+..+..+.+..+. ++||+++..|..+
T Consensus 179 ~~VS~Gn~~~adv----~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~-~KPVV~lk~Grs~ 245 (300)
T PLN00125 179 TCVGIGGDPFNGT----NFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGT-EKPVVAFIAGLTA 245 (300)
T ss_pred EEEEeCCCCCCCC----CHHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcC-CCCEEEEEecCCC
Confidence 36777776 443 35567778888888899999999988888888888887654 8999999988775
No 165
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=60.07 E-value=26 Score=34.78 Aligned_cols=89 Identities=19% Similarity=0.253 Sum_probs=63.0
Q ss_pred cceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHH--------HHHHHHHHHhcC-CCEEEEEccccchHHHHH
Q 025670 64 NGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTA--------GLAIYDTMQYIR-SPINTICLGQAASMGSLL 134 (249)
Q Consensus 64 ~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~a--------g~aIyd~i~~~~-~pV~tv~~G~AASaa~~I 134 (249)
.|...+-.++.++.....+. +. ..|++...+|-|+.+.. |.-.|+..+.+. .|.++++.|-|+.+|+++
T Consensus 104 gGt~~~~~~~Ki~r~~~~A~-~~-g~P~i~l~dsgGari~~~v~~l~g~g~iF~~~a~~Sg~IPqIsvv~G~c~gGgaY~ 181 (526)
T COG4799 104 GGTLGEMTAKKILRAQELAI-EN-GLPVIGLNDSGGARIQEGVPSLAGYGRIFYRNARASGVIPQISVVMGPCAGGGAYS 181 (526)
T ss_pred cccccccccchHHHHHHHHH-Hc-CCCEEEEEcccccccccCccccccchHHHHHHHHhccCCCEEEEEEecCccccccc
Confidence 56666666677765554333 22 46777777887765432 555677766664 799999999999999999
Q ss_pred HhcCCCCcEEeccC-ceEeeecC
Q 025670 135 LASGTKGERRALPN-STIMIHQP 156 (249)
Q Consensus 135 ~~ag~kg~R~a~p~-s~imiHqp 156 (249)
..-++ ..+|..+ +.+.+-.|
T Consensus 182 pal~D--~~imv~~~~~mfltGP 202 (526)
T COG4799 182 PALTD--FVIMVRDQSYMFLTGP 202 (526)
T ss_pred ccccc--eEEEEcCCccEEeeCH
Confidence 99998 6888887 66665554
No 166
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=59.27 E-value=51 Score=30.18 Aligned_cols=88 Identities=16% Similarity=0.246 Sum_probs=57.0
Q ss_pred EEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHH----HHH------HHHHHhcCCCEEEEE-----ccc
Q 025670 62 CINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAG----LAI------YDTMQYIRSPINTIC-----LGQ 126 (249)
Q Consensus 62 ~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag----~aI------yd~i~~~~~pV~tv~-----~G~ 126 (249)
|++|-...-+.+.|+..+.++-.+ .-|++++--|-|--.-+| +++ ...++..+.|.++|. .|+
T Consensus 133 FmgGSmGsVvGeki~ra~E~A~e~--k~P~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGV 210 (294)
T COG0777 133 FMGGSMGSVVGEKITRAIERAIED--KLPLVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV 210 (294)
T ss_pred ccccchhHHHHHHHHHHHHHHHHh--CCCEEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccch
Confidence 444444455678898888876543 367777777766544433 222 223444567888877 566
Q ss_pred cchHHHHHHhcCCCCcEEeccCceEeeecCC
Q 025670 127 AASMGSLLLASGTKGERRALPNSTIMIHQPS 157 (249)
Q Consensus 127 AASaa~~I~~ag~kg~R~a~p~s~imiHqp~ 157 (249)
-||.| +-|+ -.++-|.|.|++..|.
T Consensus 211 sASfA----~lGD--i~iAEP~AlIGFAGpR 235 (294)
T COG0777 211 SASFA----MLGD--IIIAEPGALIGFAGPR 235 (294)
T ss_pred hHhHH----hccC--eeecCcccccccCcch
Confidence 67765 4477 5899999999887663
No 167
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=55.76 E-value=80 Score=23.22 Aligned_cols=34 Identities=18% Similarity=0.366 Sum_probs=25.6
Q ss_pred EEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEE
Q 025670 60 IICINGPINDDTAHVVVAQLLFLESENPSKPIHM 93 (249)
Q Consensus 60 iI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l 93 (249)
+|.+.|.++-..+..+...+..+......+.+.+
T Consensus 15 vi~~~G~l~~~~~~~~~~~l~~~~~~~~~~~vvi 48 (108)
T TIGR00377 15 IVRLSGELDAHTAPLLREKVTPAAERTGPRPIVL 48 (108)
T ss_pred EEEEecccccccHHHHHHHHHHHHHhcCCCeEEE
Confidence 5789999999999999888876654333455666
No 168
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=52.74 E-value=25 Score=26.21 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=26.3
Q ss_pred cEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEE
Q 025670 59 RIICINGPINDDTAHVVVAQLLFLESENPSKPIHM 93 (249)
Q Consensus 59 riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l 93 (249)
-++.+.|+++-..++.+..++..+-...+.+.+.|
T Consensus 10 ~vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vil 44 (106)
T TIGR02886 10 LIVRLSGELDHHTAERVRRKIDDAIERRPIKHLIL 44 (106)
T ss_pred EEEEEecccchhhHHHHHHHHHHHHHhCCCCEEEE
Confidence 36889999999999999999876543333456666
No 169
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=52.13 E-value=48 Score=30.79 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=47.4
Q ss_pred cEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEEccccc
Q 025670 59 RIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQAA 128 (249)
Q Consensus 59 riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~~~pV~tv~~G~AA 128 (249)
.+|-+++.-..++ .+.+.|.++..++..+.|.||+-.-|-....+....+. ...++||.++..|..+
T Consensus 198 ~~VsiGnd~~~g~--~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~-~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 198 TCVGIGGDPFNGT--NFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKN-NPIKKPVVSFIAGITA 264 (317)
T ss_pred EEEEeCCCCCCCC--CHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHh-hcCCCcEEEEEecCCC
Confidence 4677777631122 35567778888788899999999877776666665555 3357999999988775
No 170
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=51.08 E-value=49 Score=27.24 Aligned_cols=30 Identities=20% Similarity=0.485 Sum_probs=25.7
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEE
Q 025670 93 MYLNSPGGQVTAGLAIYDTMQYIRSPINTIC 123 (249)
Q Consensus 93 l~INSPGG~V~ag~aIyd~i~~~~~pV~tv~ 123 (249)
+.|| ||+.-..+.+|.|+++....|++=|-
T Consensus 70 IvIN-pga~THTSvAlrDAi~av~iP~vEVH 99 (146)
T COG0757 70 IVIN-PGAYTHTSVALRDAIAAVSIPVVEVH 99 (146)
T ss_pred EEEc-CccchhhHHHHHHHHHhcCCCEEEEE
Confidence 5666 99999999999999999999976553
No 171
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=49.73 E-value=39 Score=27.31 Aligned_cols=60 Identities=17% Similarity=0.371 Sum_probs=34.1
Q ss_pred cEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcC--CCEEEEEccc
Q 025670 59 RIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIR--SPINTICLGQ 126 (249)
Q Consensus 59 riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~~--~pV~tv~~G~ 126 (249)
.+|.++...|-. +.+-|.|+..++..+-|.+|+.+-+- +..+.+.++... +||+++-.|.
T Consensus 30 ~~vs~Gn~~dv~----~~d~l~~~~~D~~t~~I~ly~E~~~d----~~~f~~~~~~a~~~KPVv~lk~Gr 91 (138)
T PF13607_consen 30 YVVSVGNEADVD----FADLLEYLAEDPDTRVIVLYLEGIGD----GRRFLEAARRAARRKPVVVLKAGR 91 (138)
T ss_dssp EEEE-TT-SSS-----HHHHHHHHCT-SS--EEEEEES--S-----HHHHHHHHHHHCCCS-EEEEE---
T ss_pred EEEEeCccccCC----HHHHHHHHhcCCCCCEEEEEccCCCC----HHHHHHHHHHHhcCCCEEEEeCCC
Confidence 356666665443 44566777888888999999997553 566777777654 9999998876
No 172
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=48.76 E-value=96 Score=22.05 Aligned_cols=79 Identities=13% Similarity=0.134 Sum_probs=50.4
Q ss_pred cEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCC-CcHHHHHHHHHHHHhcC-CCEEEEEccccchHHHHHHh
Q 025670 59 RIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPG-GQVTAGLAIYDTMQYIR-SPINTICLGQAASMGSLLLA 136 (249)
Q Consensus 59 riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPG-G~V~ag~aIyd~i~~~~-~pV~tv~~G~AASaa~~I~~ 136 (249)
.++.+.|+++...+..+..++..+..+. .+.+.+.+..-. =+..+...+....+... ..+.+.+.|......-++-.
T Consensus 10 ~ii~l~G~l~~~~~~~~~~~~~~~~~~~-~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i~~~~~~~~~~l~~ 88 (99)
T cd07043 10 LVVRLSGELDAATAPELREALEELLAEG-PRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVLVNVSPAVRRVLEL 88 (99)
T ss_pred EEEEEeceecccchHHHHHHHHHHHHcC-CCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 4788999999999999888877655432 355665553322 24455555666666654 35666666666666666555
Q ss_pred cC
Q 025670 137 SG 138 (249)
Q Consensus 137 ag 138 (249)
+|
T Consensus 89 ~g 90 (99)
T cd07043 89 TG 90 (99)
T ss_pred hC
Confidence 54
No 173
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.65 E-value=1.4e+02 Score=29.80 Aligned_cols=96 Identities=17% Similarity=0.205 Sum_probs=66.4
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEE--cccc-----chHHHHHHhcCCCCcEEeccCceEeeecCCCCCCCchh
Q 025670 93 MYLNSPGGQVTAGLAIYDTMQYIRSPINTIC--LGQA-----ASMGSLLLASGTKGERRALPNSTIMIHQPSGGYSGQAK 165 (249)
Q Consensus 93 l~INSPGG~V~ag~aIyd~i~~~~~pV~tv~--~G~A-----ASaa~~I~~ag~kg~R~a~p~s~imiHqp~~~~~G~~~ 165 (249)
+.|=+|+=+|.=-..|.+.=+.-++-|.++| .|+. |=.++||+...- +++|.-.-+.-.|-.+
T Consensus 354 vQILTP~~sVDlLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkf----------rVLIAACDTFRsGAvE 423 (587)
T KOG0781|consen 354 VQILTPQRSVDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKF----------RVLIAACDTFRSGAVE 423 (587)
T ss_pred HHHcCCCchhhHHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCc----------eEEEEeccchhhhHHH
Confidence 4455777777655544444333333355555 3444 557899998543 4566666666678899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHh
Q 025670 166 DMTIHTKQIVRVWDALNALYCKHTGQSIEVIQK 198 (249)
Q Consensus 166 di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~ 198 (249)
.++.+.+.+..+...++.+|.+..|.+...|.+
T Consensus 424 QLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak 456 (587)
T KOG0781|consen 424 QLRTHVERLSALHGTMVELFEKGYGKDAAGVAK 456 (587)
T ss_pred HHHHHHHHHHHhccchhHHHhhhcCCChHHHHH
Confidence 999999999888889999999999988776644
No 174
>PRK06091 membrane protein FdrA; Validated
Probab=45.58 E-value=55 Score=32.81 Aligned_cols=68 Identities=19% Similarity=0.343 Sum_probs=48.9
Q ss_pred cEEEEcce-eCcch-HHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEEccccc
Q 025670 59 RIICINGP-INDDT-AHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQAA 128 (249)
Q Consensus 59 riI~L~g~-Id~~~-a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~~~pV~tv~~G~AA 128 (249)
.+|-+++. +..+. --.+.+.|.||..++..+-|.+|+-=|+-.+.. .+.+.++..++||+++..|.-.
T Consensus 222 ~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kppaE~v~~--~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 222 HAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKPPAEAVRL--KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred EEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEecCchHHHH--HHHHHHhhCCCCEEEEEecCCc
Confidence 35666665 11111 113456677888888889999999778877775 8888888889999999988654
No 175
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=44.84 E-value=1e+02 Score=23.09 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=51.6
Q ss_pred cEEEEcceeCcchHHHHHHHHHHhhhcCC--------CCCeEEEEeCCCC-cHHHHHHHHHHHHhcC-CCEEEEEccccc
Q 025670 59 RIICINGPINDDTAHVVVAQLLFLESENP--------SKPIHMYLNSPGG-QVTAGLAIYDTMQYIR-SPINTICLGQAA 128 (249)
Q Consensus 59 riI~L~g~Id~~~a~~i~a~L~~l~~~~~--------~~~I~l~INSPGG-~V~ag~aIyd~i~~~~-~pV~tv~~G~AA 128 (249)
.|+.+.|+++...++.+.+.+..+....+ .+.++|.+..--. +..+...|.+..+.++ ..+..+..|..-
T Consensus 11 ~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~~~ 90 (117)
T PF01740_consen 11 LIIRLDGPLFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVGLNP 90 (117)
T ss_dssp EEEEEESEESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEESHHH
T ss_pred EEEEEeeEEEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 57899999999999999999988776554 3566666633322 4555556666666554 455556555555
Q ss_pred hHHHHHHhc
Q 025670 129 SMGSLLLAS 137 (249)
Q Consensus 129 Saa~~I~~a 137 (249)
..-..+-.+
T Consensus 91 ~v~~~l~~~ 99 (117)
T PF01740_consen 91 DVRRILERS 99 (117)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 444444433
No 176
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=41.67 E-value=1.4e+02 Score=22.05 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=46.2
Q ss_pred cEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEe-CCCCcHHHHHHHHHHHHhcC-CCEEEEEccccchHHHHHHh
Q 025670 59 RIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLN-SPGGQVTAGLAIYDTMQYIR-SPINTICLGQAASMGSLLLA 136 (249)
Q Consensus 59 riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~IN-SPGG~V~ag~aIyd~i~~~~-~pV~tv~~G~AASaa~~I~~ 136 (249)
-++.+.|+++...+..+...+...-.+.+.+.+.+.+. .+-=+.++...+.+..+..+ ..+..++.|.-....-++-.
T Consensus 12 ~v~~l~G~L~~~~a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~~~v~~~l~~ 91 (109)
T cd07041 12 LVLPLIGDLDDERAEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIRPEVAQTLVE 91 (109)
T ss_pred EEEeeeeeECHHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 35789999999999999887754433233455666442 22223344444455555443 34555555665555555555
Q ss_pred cC
Q 025670 137 SG 138 (249)
Q Consensus 137 ag 138 (249)
.|
T Consensus 92 ~g 93 (109)
T cd07041 92 LG 93 (109)
T ss_pred hC
Confidence 54
No 177
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=37.72 E-value=1.3e+02 Score=27.53 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=42.7
Q ss_pred cEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHh-cCCCEEEEEccccc
Q 025670 59 RIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQY-IRSPINTICLGQAA 128 (249)
Q Consensus 59 riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~-~~~pV~tv~~G~AA 128 (249)
.+|.++...+.++ .+.+-|.|+..++..+.|.+|+-+-|-....+ ...++. .++||.++-.|...
T Consensus 172 ~~Vs~Gn~a~~dv--~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~~---~~~~~~~~~KPVV~lk~Grs~ 237 (286)
T TIGR01019 172 TCVGIGGDPVNGT--SFIDVLEAFEKDPETEAIVMIGEIGGSAEEEA---ADFIKQNMSKPVVGFIAGATA 237 (286)
T ss_pred EEEEeCCCcCCCC--CHHHHHHHHhhCCCCcEEEEEEecCCchHHHH---HHHHHhcCCCCEEEEEecCCC
Confidence 3677777744222 34456677888888899999999644333322 233443 67999999888754
No 178
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=35.13 E-value=67 Score=28.96 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=30.8
Q ss_pred eEEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEEccc
Q 025670 91 IHMYLNSPG-GQVTAGLAIYDTMQYIRSPINTICLGQ 126 (249)
Q Consensus 91 I~l~INSPG-G~V~ag~aIyd~i~~~~~pV~tv~~G~ 126 (249)
|.+.+..+| |.++-+++|.+.++. +..|..++.|.
T Consensus 2 il~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~ 37 (321)
T TIGR00661 2 ILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGR 37 (321)
T ss_pred EEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCC
Confidence 788999999 999999999999998 77787776665
No 179
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=32.30 E-value=87 Score=28.29 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=42.7
Q ss_pred cEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEE
Q 025670 59 RIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYL-NSPGGQVTAGLAIYDTMQYIRSPINTIC 123 (249)
Q Consensus 59 riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~I-NSPGG~V~ag~aIyd~i~~~~~pV~tv~ 123 (249)
||+|+++.+...=-+.+...|..+..+.+..-+...- |+.|| ..-...+++.|...+.++.|..
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG-~Gi~~~~~~~L~~~GvDviT~G 66 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHG-KGLTLKIYEFLKQSGVNYITMG 66 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCC-CCCCHHHHHHHHhcCCCEEEcc
Confidence 6889888887754555666666777655433333333 44454 3445889999999999988875
No 180
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=32.30 E-value=2.4e+02 Score=23.29 Aligned_cols=72 Identities=22% Similarity=0.313 Sum_probs=44.2
Q ss_pred cchhhhhcc------CcEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCC-CcHHHHHHHHHHHHhcCCCEEE
Q 025670 49 YDIFSRLLK------ERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPG-GQVTAGLAIYDTMQYIRSPINT 121 (249)
Q Consensus 49 ~di~~~l~~------~riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPG-G~V~ag~aIyd~i~~~~~pV~t 121 (249)
.|+...+++ .+|.+|+|. +++.+.+.+.|. ..-+ .+.+.-..+| -+-.+-..|.+.|+.++.++..
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~---~~yP--~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~ 106 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLR---RRYP--GLRIVGYHHGYFDEEEEEAIINRINASGPDIVF 106 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHH---HHCC--CeEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 355555553 255555553 455555555554 3333 3444433333 4777889999999999999998
Q ss_pred EEcccc
Q 025670 122 ICLGQA 127 (249)
Q Consensus 122 v~~G~A 127 (249)
++.|.=
T Consensus 107 vglG~P 112 (172)
T PF03808_consen 107 VGLGAP 112 (172)
T ss_pred EECCCC
Confidence 887743
No 181
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=31.35 E-value=1.4e+02 Score=26.43 Aligned_cols=56 Identities=20% Similarity=0.218 Sum_probs=43.4
Q ss_pred EEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCCEEE
Q 025670 62 CINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINT 121 (249)
Q Consensus 62 ~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~~~pV~t 121 (249)
.-.++|-..+...+..++..+. ..-..+.+|+||+.+.++.++-+.++..+..+.|
T Consensus 52 ~atPaiaaG~~~el~r~~~~~d----gr~l~VvVse~~a~~da~sal~~lir~~G~y~~t 107 (245)
T COG3904 52 SATPAIAAGTPAELKRTLKTLD----GRQLPVVVSEPGANVDAASALGRLIRKAGLYIAT 107 (245)
T ss_pred cCCCcccCCCHHHHHHhhhhcc----CceeeEEEcCCCCCccHHHHHHHHHhccCceeEE
Confidence 3355566666666666654433 4678899999999999999999999999988877
No 182
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=30.48 E-value=90 Score=23.85 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=27.7
Q ss_pred EEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCc
Q 025670 60 IICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQ 101 (249)
Q Consensus 60 iI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~ 101 (249)
++.+.|.||...+..+...+...-.....+. +.||.-|=+
T Consensus 16 vl~l~G~lD~~~a~~~~e~~~~~~~~~~~~~--ivIDls~v~ 55 (117)
T COG1366 16 VLPLIGELDAARAPALKETLLEVIAASGARG--LVIDLSGVD 55 (117)
T ss_pred EEEeeEEEchHHHHHHHHHHHHHHhcCCCcE--EEEECCCCc
Confidence 6889999999999999988874443332222 666665543
No 183
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=30.14 E-value=2e+02 Score=24.73 Aligned_cols=73 Identities=14% Similarity=0.074 Sum_probs=44.2
Q ss_pred hhhhhccCcEEEEcceeCcchHHHHHHHHHHhh-hcCCCCCeEEEE---eCCCCcHHHHHHHHHHHHhcCCCEEEEEccc
Q 025670 51 IFSRLLKERIICINGPINDDTAHVVVAQLLFLE-SENPSKPIHMYL---NSPGGQVTAGLAIYDTMQYIRSPINTICLGQ 126 (249)
Q Consensus 51 i~~~l~~~riI~L~g~Id~~~a~~i~a~L~~l~-~~~~~~~I~l~I---NSPGG~V~ag~aIyd~i~~~~~pV~tv~~G~ 126 (249)
+...++.+--+.+ .++.+++.+.-.+..|. ..+....+.+.+ |...|.+..-.+-...-+..+.+|+|+..|-
T Consensus 76 ~l~~~l~~~q~g~---ag~~TadAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG~ 152 (191)
T cd01455 76 TLKMMHAHSQFCW---SGDHTVEATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIGS 152 (191)
T ss_pred HHHHHHHhcccCc---cCccHHHHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEecC
Confidence 4455555554543 44678877877888886 444344566655 3334445544433444556678899998876
No 184
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=29.94 E-value=31 Score=22.25 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=15.5
Q ss_pred cCCcccCHHHHHHcCCcce
Q 025670 201 DRDYFMTPEEAKEFGIIDE 219 (249)
Q Consensus 201 ~~d~~lsa~EA~e~GlID~ 219 (249)
.....|+-+||++.|+||.
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 3567889999999999995
No 185
>TIGR02763 chlamy_scaf chlamydiaphage internal scaffolding protein. Members of this protein family are encoded by genes in chlamydiaphage such as Chp2, viruses with around eight genes that infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein, initially designated VP3 (as if a structural protein of mature viral particles), is displaced from procapsids as DNA is packaged, and therefore is described as a scafolding protein.
Probab=29.81 E-value=2.6e+02 Score=21.91 Aligned_cols=59 Identities=14% Similarity=0.232 Sum_probs=38.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHH---HHHhhCCCHHHHHhhhcC-CcccCHHHHHHcCCcceecCC
Q 025670 162 GQAKDMTIHTKQIVRVWDALNAL---YCKHTGQSIEVIQKNMDR-DYFMTPEEAKEFGIIDEVIDQ 223 (249)
Q Consensus 162 G~~~di~~~a~~l~~~~~~~~~~---ya~~tg~~~~~i~~~~~~-d~~lsa~EA~e~GlID~I~~~ 223 (249)
-.+-|.....+.+.+.++.|... +.++.|-+++++.+.+++ +.| +|++.+||.|.-...
T Consensus 28 ~sp~D~qeAln~Vie~~eaFdsLPAkvRe~FgNdPeeml~~L~d~~ny---de~~algll~~e~~~ 90 (114)
T TIGR02763 28 PSPLDYQEALNIVIEGEEAFDSLPAKVRENFGNDPEEMLSWLEDEANY---DEVEALGLLDPETKI 90 (114)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhHHHHHHhCCCHHHHHHHHhChhhH---HHHHHhccccccccc
Confidence 34555555555555555555443 556788888888777764 344 689999999865443
No 186
>smart00250 PLEC Plectin repeat.
Probab=29.61 E-value=36 Score=21.07 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=16.0
Q ss_pred CCcccCHHHHHHcCCccee
Q 025670 202 RDYFMTPEEAKEFGIIDEV 220 (249)
Q Consensus 202 ~d~~lsa~EA~e~GlID~I 220 (249)
...-||-.||++.|+||..
T Consensus 18 t~~~lsv~eA~~~glid~~ 36 (38)
T smart00250 18 TGQKLSVEEALRRGLIDPE 36 (38)
T ss_pred CCCCcCHHHHHHcCCCCcc
Confidence 4567899999999999964
No 187
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=29.49 E-value=2.2e+02 Score=25.99 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=40.6
Q ss_pred cEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHh-cCCCEEEEEccccc
Q 025670 59 RIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQY-IRSPINTICLGQAA 128 (249)
Q Consensus 59 riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~-~~~pV~tv~~G~AA 128 (249)
.+|.++..-+.++ .+.+.|.||..++..+.|.+|+-+-|-.-..+ ...+.. .++||+++-.|...
T Consensus 174 ~~Vs~Gn~~~~dv--~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~a---~~~~~~~~~KPVV~lk~Grs~ 239 (291)
T PRK05678 174 TCVGIGGDPINGT--NFIDVLEAFEEDPETEAIVMIGEIGGSAEEEA---AEYIKANVTKPVVGYIAGVTA 239 (291)
T ss_pred EEEEeCCCcCCCC--CHHHHHHHHhhCCCCcEEEEEEecCCcHHHHH---HHHHHHcCCCCEEEEEecCCC
Confidence 3667776633222 34456778888888899999999432211122 122333 48999999988855
No 188
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=29.32 E-value=48 Score=28.09 Aligned_cols=29 Identities=34% Similarity=0.741 Sum_probs=20.1
Q ss_pred CC-CcHHHHH------HHHHHHHhcCCCEEEEEccc
Q 025670 98 PG-GQVTAGL------AIYDTMQYIRSPINTICLGQ 126 (249)
Q Consensus 98 PG-G~V~ag~------aIyd~i~~~~~pV~tv~~G~ 126 (249)
|| |...+.+ .+.+.++..+.||.-+|.|+
T Consensus 45 PG~G~~~~~~~~l~~~~l~~~i~~~~~PilGIClG~ 80 (196)
T PRK13170 45 PGVGTAQAAMDQLRERELIDLIKACTQPVLGICLGM 80 (196)
T ss_pred CCCCchHHHHHHHHHcChHHHHHHcCCCEEEECHHH
Confidence 88 6655553 34667777788988888764
No 189
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=29.08 E-value=2.9e+02 Score=21.85 Aligned_cols=56 Identities=9% Similarity=0.179 Sum_probs=37.2
Q ss_pred cCcEEEEcceeCcc---hHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhc
Q 025670 57 KERIICINGPINDD---TAHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYI 115 (249)
Q Consensus 57 ~~riI~L~g~Id~~---~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~ 115 (249)
+.+|..++|.=+.. ....|.+.+..+.+ ..+.+.++.+= ||++.......+.++.-
T Consensus 27 ~~~i~~~gg~~d~~~gt~~~~I~~ai~~~~~--~~dgVlvl~DL-Ggs~~n~e~a~~~l~~~ 85 (125)
T TIGR02364 27 DVTIISAGGTDDGRLGTSPDKIIEAIEKADN--EADGVLIFYDL-GSAVMNAEMAVELLEDE 85 (125)
T ss_pred CccEEEEecCCCCCccchHHHHHHHHHHhcC--CCCCEEEEEcC-CCcHhHHHHHHHHhccc
Confidence 45677777665544 34556666655432 14679999999 99998876677777543
No 190
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=28.28 E-value=61 Score=28.96 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=36.1
Q ss_pred CHHHHHhhhcCCcc---------cCHHHHH----HcCCcceecCCCccccccccccCCCcCCcccc
Q 025670 192 SIEVIQKNMDRDYF---------MTPEEAK----EFGIIDEVIDQRPMALVTDAVGREGKEGKEGK 244 (249)
Q Consensus 192 ~~~~i~~~~~~d~~---------lsa~EA~----e~GlID~I~~~~~~~~~~~~~~~~~~~~~~~~ 244 (249)
+.+.+...+++++| ||++||+ +|| .++++-+.+.....+....-|++...=+
T Consensus 166 N~etv~~vld~e~~vGlTvqPgKlt~~eAveIV~ey~-~~r~ilnSD~~s~~sd~lavprtal~m~ 230 (254)
T COG1099 166 NEETVDEVLDEEFYVGLTVQPGKLTVEEAVEIVREYG-AERIILNSDAGSAASDPLAVPRTALEME 230 (254)
T ss_pred cHHHHHHHHhccceEEEEecCCcCCHHHHHHHHHHhC-cceEEEecccccccccchhhhHHHHHHH
Confidence 34455555555554 7899996 579 8998877777777777777777655433
No 191
>PF07027 DUF1318: Protein of unknown function (DUF1318); InterPro: IPR008309 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.04 E-value=2.8e+02 Score=21.05 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=37.3
Q ss_pred ccCceEeeecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHhhh
Q 025670 146 LPNSTIMIHQPSGGYSGQAKDMTIHTKQIVRVWDALNALYCKHTGQSIEVIQKNM 200 (249)
Q Consensus 146 ~p~s~imiHqp~~~~~G~~~di~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~ 200 (249)
.++..+.++.+ ...++....+.+..-+......+++..|.++++|....
T Consensus 23 ~~dGyL~~v~~------~~~~~~~lV~~~N~~R~~~Y~~iA~~ng~t~~~V~~~~ 71 (95)
T PF07027_consen 23 QNDGYLGVVTS------ASAEVRALVAAINADRRALYQEIAKKNGITVEQVAATA 71 (95)
T ss_pred cCCceEEecCC------CCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 34667777663 33566667778888888888999999999999997654
No 192
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=24.95 E-value=1.4e+02 Score=26.60 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=42.3
Q ss_pred cEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEE-E-eCCCCc-HHHHHHHHHHHHhcCCCEEEEE
Q 025670 59 RIICINGPINDDTAHVVVAQLLFLESENPSKPIHMY-L-NSPGGQ-VTAGLAIYDTMQYIRSPINTIC 123 (249)
Q Consensus 59 riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~-I-NSPGG~-V~ag~aIyd~i~~~~~pV~tv~ 123 (249)
||+||++.+...=...+...|..+..+.+. ++.+. - |+-||. + ...+++.|+..+.++.|..
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~-D~vi~NgEn~~gg~gl--~~~~~~~L~~~G~D~iTlG 65 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKI-DFVIANGENAAGGKGI--TPKIAKELLSAGVDVITMG 65 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCC-CEEEECCccccCCCCC--CHHHHHHHHhcCCCEEEec
Confidence 689999988887666777777777665432 22221 1 455552 3 3678999999999988875
No 193
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=24.90 E-value=1.6e+02 Score=23.81 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=30.7
Q ss_pred cCcEEEEcceeCcch------HHHHHHHHHHhhhcCCCCCeEEEEeCCCCc--HHHHHHHHHHHH
Q 025670 57 KERIICINGPINDDT------AHVVVAQLLFLESENPSKPIHMYLNSPGGQ--VTAGLAIYDTMQ 113 (249)
Q Consensus 57 ~~riI~L~g~Id~~~------a~~i~a~L~~l~~~~~~~~I~l~INSPGG~--V~ag~aIyd~i~ 113 (249)
...+-|.-=||.+.. .+.|+..+. +- .+.-.|.+||-.|. -+.++.||++|+
T Consensus 90 ~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~---~~--p~~~~l~fhC~~G~GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPDPEDIDAFINFVK---SL--PKDTWLHFHCQAGRGRTTTFMVMYDLIR 149 (149)
T ss_dssp HTT-EEEEEEE-TTS---HHHHHHHHHHHH---TS---TT-EEEEE-SSSSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCCCHHHHHHHHHHHH---hC--CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 345666666776653 334444333 32 24678888998886 688899999885
No 194
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=24.73 E-value=1.1e+02 Score=31.95 Aligned_cols=42 Identities=12% Similarity=0.242 Sum_probs=27.8
Q ss_pred EEEEcceeCcchHHHHHHHHHHhhhcCC--------CCCeEEEEeCCCCc
Q 025670 60 IICINGPINDDTAHVVVAQLLFLESENP--------SKPIHMYLNSPGGQ 101 (249)
Q Consensus 60 iI~L~g~Id~~~a~~i~a~L~~l~~~~~--------~~~I~l~INSPGG~ 101 (249)
-+.++|..++-+-+.+..++.|+.+... ...-.+|||-|||.
T Consensus 623 ~~~~tG~lg~vmkes~~~A~~~~~~~~~~~~~~~~~~~~~Di~i~v~~g~ 672 (784)
T PRK10787 623 KLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGA 672 (784)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCCcccccCceEEEEecCCC
Confidence 4668888888776666666766654211 12446889999984
No 195
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=24.09 E-value=1.6e+02 Score=25.52 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhc
Q 025670 72 AHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYI 115 (249)
Q Consensus 72 a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~ 115 (249)
...|..+++.+.--...+.+-+|+|+++|.|..+.-|-++++.=
T Consensus 31 s~ai~~kV~e~~~fk~skrvs~YmSm~~~Ev~T~~Ii~~~fq~g 74 (200)
T KOG3093|consen 31 SEAISKKVLELPWFKNSKRVSIYMSMDKGEVDTGEIIKEAFQDG 74 (200)
T ss_pred HHHHHHHHHhhHHHHhcCceEEEEecCcccccHHHHHHHHHhcC
Confidence 34555555544433346899999999999999998888888754
No 196
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=23.90 E-value=2.2e+02 Score=26.86 Aligned_cols=70 Identities=13% Similarity=0.024 Sum_probs=41.5
Q ss_pred EEEcceeCcchHHHHHHHHHHhhh---cCCCCCeEEEEeCCCCcHHHH---HHHHHHHHhcCCCEEEEEccccchH
Q 025670 61 ICINGPINDDTAHVVVAQLLFLES---ENPSKPIHMYLNSPGGQVTAG---LAIYDTMQYIRSPINTICLGQAASM 130 (249)
Q Consensus 61 I~L~g~Id~~~a~~i~a~L~~l~~---~~~~~~I~l~INSPGG~V~ag---~aIyd~i~~~~~pV~tv~~G~AASa 130 (249)
++++-+.|...++.+...|....- ++..++=.+.|||-+-...+- ..+...++...+.+.+++.|.-++.
T Consensus 2 ~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a~~ 77 (414)
T TIGR01579 2 ETLGCRVNQYESESLKNQLIQKGYEVVPDEDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYAQS 77 (414)
T ss_pred EeeCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCcccc
Confidence 566777777777777777764321 222345577788887776554 4444444444445667776755443
No 197
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=23.41 E-value=1.8e+02 Score=26.52 Aligned_cols=55 Identities=18% Similarity=0.298 Sum_probs=45.0
Q ss_pred cCcEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHH--HHHHHHHH
Q 025670 57 KERIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGQVT--AGLAIYDT 111 (249)
Q Consensus 57 ~~riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~--ag~aIyd~ 111 (249)
..|+.=+.+.|+...-..+..+|..|+++...+-.+|.|.|-+|.-- .+..++|.
T Consensus 33 ~~~V~D~t~~Ls~~e~~~Leq~l~~L~~kt~~QiaVv~vpSt~g~~IE~ya~rlfd~ 89 (271)
T COG1512 33 SQRVTDLTGTLSAAERGALEQQLADLEQKTGAQIAVVTVPSTGGETIEQYATRLFDK 89 (271)
T ss_pred cceeeeccccCChhhHHHHHHHHHHHHhccCCeEEEEEecCCCCCCHHHHHHHHHHh
Confidence 45666678889999999999999999999988999999999998753 34455665
No 198
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=22.93 E-value=2.4e+02 Score=27.86 Aligned_cols=40 Identities=25% Similarity=0.363 Sum_probs=23.0
Q ss_pred EEEEcceeCcc-----------------hHHHHHHHHHHhhhcCCCCCeEEEEeCCCC
Q 025670 60 IICINGPINDD-----------------TAHVVVAQLLFLESENPSKPIHMYLNSPGG 100 (249)
Q Consensus 60 iI~L~g~Id~~-----------------~a~~i~a~L~~l~~~~~~~~I~l~INSPGG 100 (249)
.+.+.|-.+++ ..+++.+.|...-. -+-..-.++||.|||
T Consensus 380 ~~~i~G~~~~~~~~~~~~~~~~k~~~~es~~~v~~~l~~~~g-~~~~~~di~vn~p~~ 436 (531)
T TIGR02902 380 SINVTGIIEEEEIGGSGKSVRRKSSARGSVENVLAVLRSVFG-INPQNYDIHINFPGG 436 (531)
T ss_pred eEEEEeccCccccccchhhhhHHHHHHHHHHHHHHHHHHhcC-CCCCCeeEEEEcCCC
Confidence 57778877751 22334444443211 123467888889997
No 199
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=22.88 E-value=2.9e+02 Score=21.25 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=28.4
Q ss_pred CcEEEEcceeCcch---HHHHHHHHHHhhhcCCCCCeEEEEeCCCCcHHHH
Q 025670 58 ERIICINGPINDDT---AHVVVAQLLFLESENPSKPIHMYLNSPGGQVTAG 105 (249)
Q Consensus 58 ~riI~L~g~Id~~~---a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V~ag 105 (249)
+.+..++.+.++.. .+.+.+.+. ..+..+.+.+..+=+||++...
T Consensus 27 ~~i~~~~~~~~~~~~~~~~~i~~~i~---~~~~~~~viil~Dl~GGSp~n~ 74 (122)
T cd00006 27 ENVEAIDFPPGESPDDLLEKIKAALA---ELDSGEGVLILTDLFGGSPNNA 74 (122)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH---HhCCCCcEEEEEeCCCCCHHHH
Confidence 35666666666542 333433333 3333578999999999999764
No 200
>PRK14635 hypothetical protein; Provisional
Probab=22.85 E-value=1.5e+02 Score=24.69 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=29.3
Q ss_pred eeCcchHHHHHHHHHH-hhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCCEEE
Q 025670 66 PINDDTAHVVVAQLLF-LESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINT 121 (249)
Q Consensus 66 ~Id~~~a~~i~a~L~~-l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~~~pV~t 121 (249)
.|+-+....+...+.. |+..++..+-.|-+.|||=+= .-..--+..++.+.+|.+
T Consensus 49 gv~lddC~~vSr~is~~LD~~d~~~~Y~LEVSSPGldR-pL~~~~~~~r~~G~~v~v 104 (162)
T PRK14635 49 SVSLLECEQVSRKLKEELERISPDLDFTLKVSSAGAER-KLRLPEDLDRFRGIPVRL 104 (162)
T ss_pred CcCHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCCC-cCCCHHHHHHhCCCEEEE
Confidence 3665555555554432 233344568899999999541 111122344555555543
No 201
>PRK14640 hypothetical protein; Provisional
Probab=22.59 E-value=1.5e+02 Score=24.29 Aligned_cols=62 Identities=16% Similarity=0.266 Sum_probs=35.6
Q ss_pred EEEcc--eeCcchHHHHHHHHHH-hhhcCC-CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEE
Q 025670 61 ICING--PINDDTAHVVVAQLLF-LESENP-SKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTIC 123 (249)
Q Consensus 61 I~L~g--~Id~~~a~~i~a~L~~-l~~~~~-~~~I~l~INSPGG~V~ag~aIyd~i~~~~~pV~tv~ 123 (249)
|||.. .|+-+....+..+|.. |+.+++ ..+-+|-+.|||=+= .-...-+..++.+.+|.+..
T Consensus 39 V~ID~~~gv~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~R-pL~~~~~f~r~~G~~v~V~l 104 (152)
T PRK14640 39 VYIDGENGVSVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDR-PLFKVAQFEKYVGQEAAVTL 104 (152)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCC-cCCCHHHHHHhCCCeEEEEE
Confidence 45542 3666666666666653 333333 357899999999751 11223455566666665543
No 202
>COG3093 VapI Plasmid maintenance system antidote protein [General function prediction only]
Probab=22.22 E-value=1.1e+02 Score=23.85 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=23.6
Q ss_pred HHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHcC
Q 025670 182 NALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEFG 215 (249)
Q Consensus 182 ~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~G 215 (249)
...+++..|.+...|.+++....-+|++-|+.++
T Consensus 26 ~~~lA~~lgV~r~~is~ling~~~iT~dmAlrL~ 59 (104)
T COG3093 26 QTELAEALGVTRNTISELINGRRAITADMALRLA 59 (104)
T ss_pred HHHHHHHhCCCHHHHHHHHcCCcCCCHHHHHHHH
Confidence 3456777777777777777776777777776653
No 203
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=22.05 E-value=4e+02 Score=24.10 Aligned_cols=86 Identities=12% Similarity=0.124 Sum_probs=50.9
Q ss_pred EEEEccee-CcchHHHHHHHHHHhhhcCCC-CCeEEEEeCCCCcH-----HHHHHHHHHHHhcCCCEEEEEcccc-chHH
Q 025670 60 IICINGPI-NDDTAHVVVAQLLFLESENPS-KPIHMYLNSPGGQV-----TAGLAIYDTMQYIRSPINTICLGQA-ASMG 131 (249)
Q Consensus 60 iI~L~g~I-d~~~a~~i~a~L~~l~~~~~~-~~I~l~INSPGG~V-----~ag~aIyd~i~~~~~pV~tv~~G~A-ASaa 131 (249)
++...-.+ +++.+..|+.+|..++..... ..=.|.|-=.||+. +.-..+..+|-.++.||++=+..-. .+.+
T Consensus 44 ~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~PvisaIGHe~D~ti~ 123 (319)
T PF02601_consen 44 IILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISAIGHETDFTIA 123 (319)
T ss_pred EEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEecCCCCCchHH
Confidence 33333334 345678899999988764311 12233344456664 5567788889999999988664432 2222
Q ss_pred HHHHhcCCCCcEEeccCce
Q 025670 132 SLLLASGTKGERRALPNST 150 (249)
Q Consensus 132 ~~I~~ag~kg~R~a~p~s~ 150 (249)
= ..++ .|+..|++-
T Consensus 124 D---~vAd--~ra~TPtaa 137 (319)
T PF02601_consen 124 D---FVAD--LRAPTPTAA 137 (319)
T ss_pred H---HHHH--hhCCCHHHH
Confidence 2 3334 577777654
No 204
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=21.83 E-value=1.5e+02 Score=18.92 Aligned_cols=33 Identities=12% Similarity=0.060 Sum_probs=25.6
Q ss_pred HHHHHHhhCCCHHHHHhhhcCCcccCHHHHHHc
Q 025670 182 NALYCKHTGQSIEVIQKNMDRDYFMTPEEAKEF 214 (249)
Q Consensus 182 ~~~ya~~tg~~~~~i~~~~~~d~~lsa~EA~e~ 214 (249)
..-+++.+|.+...+.++.......+.+.+..+
T Consensus 12 ~~~la~~~gis~~~i~~~~~g~~~~~~~~~~~i 44 (55)
T PF01381_consen 12 QKELAEKLGISRSTISRIENGKRNPSLDTLKKI 44 (55)
T ss_dssp HHHHHHHHTS-HHHHHHHHTTSSTSBHHHHHHH
T ss_pred HHHHHHHhCCCcchhHHHhcCCCCCCHHHHHHH
Confidence 355888999999999988888888888877653
No 205
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=21.59 E-value=3.3e+02 Score=19.84 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=26.0
Q ss_pred cEEEEcceeCcchHHHHHHHHHHhhhcCCCCCeEEEE
Q 025670 59 RIICINGPINDDTAHVVVAQLLFLESENPSKPIHMYL 95 (249)
Q Consensus 59 riI~L~g~Id~~~a~~i~a~L~~l~~~~~~~~I~l~I 95 (249)
.++.+.|+++-..+..+..++..+-.+...+.+.+.+
T Consensus 10 ~ii~~~G~l~f~~~~~~~~~l~~~~~~~~~~~vilDl 46 (100)
T cd06844 10 WVVRLEGELDHHSVEQFKEELLHNITNVAGKTIVIDI 46 (100)
T ss_pred EEEEEEEEecHhhHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 3689999999999999998886544333344555543
No 206
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.11 E-value=1.9e+02 Score=24.03 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=24.5
Q ss_pred EEEc--ceeCcchHHHHHHHHHH-hhhcCCCC-CeEEEEeCCCCc
Q 025670 61 ICIN--GPINDDTAHVVVAQLLF-LESENPSK-PIHMYLNSPGGQ 101 (249)
Q Consensus 61 I~L~--g~Id~~~a~~i~a~L~~-l~~~~~~~-~I~l~INSPGG~ 101 (249)
|++. |.++=+....+..++.. |+.+|+.. .-+|-+.|||-+
T Consensus 41 I~id~~g~v~lddC~~vSr~is~~LD~edpi~~~Y~LEVSSPGld 85 (153)
T COG0779 41 IYIDKEGGVTLDDCADVSRAISALLDVEDPIEGAYFLEVSSPGLD 85 (153)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhccCCcccccEEEEeeCCCCC
Confidence 4444 56665555555555442 33345443 677999999976
No 207
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=20.67 E-value=1e+02 Score=28.64 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=30.9
Q ss_pred CcEEEEcceeCcc---hHHHHHHHHHHhhhcCCCCCeEEEEeCCCCcH
Q 025670 58 ERIICINGPINDD---TAHVVVAQLLFLESENPSKPIHMYLNSPGGQV 102 (249)
Q Consensus 58 ~riI~L~g~Id~~---~a~~i~a~L~~l~~~~~~~~I~l~INSPGG~V 102 (249)
.++|.+.|+|... .|..+..+|-+-. =+...-=.+|+||.|++.
T Consensus 71 SkvI~VeGnI~sGK~klAKelAe~Lgf~h-fP~~~~d~iyvdsyg~D~ 117 (393)
T KOG3877|consen 71 SKVIVVEGNIGSGKTKLAKELAEQLGFVH-FPEFRMDDIYVDSYGNDL 117 (393)
T ss_pred ceEEEEeCCcccCchhHHHHHHHHhCCcc-cccccccceeecccCccc
Confidence 3699999999986 5667777765432 122344568999999975
No 208
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=20.59 E-value=2.6e+02 Score=23.83 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=25.7
Q ss_pred CCCeEEEEeCCCCcHHH-HHHHHHHHHhcCCCEEEEEcccc
Q 025670 88 SKPIHMYLNSPGGQVTA-GLAIYDTMQYIRSPINTICLGQA 127 (249)
Q Consensus 88 ~~~I~l~INSPGG~V~a-g~aIyd~i~~~~~pV~tv~~G~A 127 (249)
.+.|.+++.|||-.=.. ...+...++.....|.+++.|-.
T Consensus 107 ~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~ 147 (187)
T cd01452 107 KQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEI 147 (187)
T ss_pred cceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 35899999999875322 22444555555567777776644
No 209
>PRK14637 hypothetical protein; Provisional
Probab=20.19 E-value=1.7e+02 Score=24.02 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=34.9
Q ss_pred EEEc--ceeCcchHHHHHHHHHH-hhhcCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEE
Q 025670 61 ICIN--GPINDDTAHVVVAQLLF-LESENPSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPINTIC 123 (249)
Q Consensus 61 I~L~--g~Id~~~a~~i~a~L~~-l~~~~~~~~I~l~INSPGG~V~ag~aIyd~i~~~~~pV~tv~ 123 (249)
|+|. +.|+-+....+..++.. |+...+..+.+|-+.|||=+= .-...-+..++.+.+|.+..
T Consensus 41 V~ID~~~gV~iddC~~vSr~Is~~LD~~~~~~~y~LEVSSPGldR-pL~~~~~f~r~~G~~V~V~l 105 (151)
T PRK14637 41 AVIYSAGGVGLDDCARVHRILVPRLEALGGVRDVFLEVSSPGIER-VIKNAAEFSIFVGETVKVWF 105 (151)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCC-CCCCHHHHHHhCCCEEEEEE
Confidence 4554 33666666666655442 222222456799999999751 11223455666666666654
Done!