BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025671
(249 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P14895|ELI5_HORVU High molecular mass early light-inducible protein HV58,
chloroplastic OS=Hordeum vulgare PE=2 SV=1
Length = 231
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 157 FHLPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNED 216
F P E +NGR AM+GF A V++ G GL+DQ+ + F+A GV
Sbjct: 124 FSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVF------S 177
Query: 217 IETLKKLLEETTFYDK 232
+ +L LL+ + K
Sbjct: 178 VASLLPLLQGQSVESK 193
>sp|Q07473|CB4A_ARATH Chlorophyll a-b binding protein CP29.1, chloroplastic
OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1
Length = 290
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 18/94 (19%)
Query: 154 IKRFHLPEAELLNGRAAMIGFFMAYLVDSLTGVG--------LVDQMSN------FFCKT 199
I+RF E EL++GR AM+ A V+ LTGV LVD S F T
Sbjct: 133 IQRFR--ECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSIST 190
Query: 200 LLF--VAVVGVLLIRKNEDIETLKKLLEETTFYD 231
L++ V V+G + ++N ++++ K+L F+D
Sbjct: 191 LIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFD 224
>sp|P14897|ELI9_HORVU Low molecular mass early light-inducible protein HV90,
chloroplastic OS=Hordeum vulgare PE=2 SV=1
Length = 172
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 157 FHLPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSN-----FFCKTLLFVAVVGVLLI 211
F P E +NGR AM+GF A V++ G GL+ Q+ + +F T+ +++ ++ +
Sbjct: 66 FSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPL 125
Query: 212 RKNEDIE 218
+ E E
Sbjct: 126 LQGESAE 132
>sp|P11432|ELI_PEA Early light-induced protein, chloroplastic OS=Pisum sativum PE=2
SV=1
Length = 196
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 157 FHLPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSN 194
F P E +NGR AMIGF A V+ G GL +Q+S
Sbjct: 93 FSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSG 130
>sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2, chloroplastic
OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1
Length = 287
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 18/94 (19%)
Query: 154 IKRFHLPEAELLNGRAAMIGFFMAYLVDSLTGVG--------LVDQMSN------FFCKT 199
++RF E EL++GR AM+ A V+ LTGV LVD S F T
Sbjct: 130 LQRFR--ECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSIST 187
Query: 200 LLF--VAVVGVLLIRKNEDIETLKKLLEETTFYD 231
L++ V V+G + ++N ++++ K+L F+D
Sbjct: 188 LIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFD 221
>sp|Q9S7W1|CB4C_ARATH Chlorophyll a-b binding protein CP29.3, chloroplastic
OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1
Length = 276
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 18/92 (19%)
Query: 154 IKRFHLPEAELLNGRAAMIGFFMAYLVDSLTGVGLVD-------QMSNFFCKTLLF---- 202
I+RF E EL++GR AM+G A V++LTG+ D + S++ + L F
Sbjct: 134 IQRFR--ECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTT 191
Query: 203 -----VAVVGVLLIRKNEDIETLKKLLEETTF 229
V VVG + ++N +++ K++ F
Sbjct: 192 LIWIEVLVVGYIEFQRNSELDPEKRIYPGGYF 223
>sp|P14896|ELI6_HORVU Low molecular mass early light-inducible protein HV60,
chloroplastic OS=Hordeum vulgare PE=2 SV=1
Length = 167
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 157 FHLPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSN-----FFCKTLLFVAVVGVLLI 211
F P E +NGR AM+GF A V++ G GL+ Q+ + +F T+ +++ ++ +
Sbjct: 61 FSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPL 120
Query: 212 RKNEDIE 218
+ E E
Sbjct: 121 LQGESAE 127
>sp|Q2UUI0|ACRB_ASPOR Probable ubiquitination network signaling protein acrB
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=acrB PE=3 SV=2
Length = 1013
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 35 SKKESFFTLRASAADNGAGVSAPAVTVEEPKVREASEGP--------TESNGAVEAPEVK 86
+K++S L +A + A +S P+ V+ P R S+ T++NG E +
Sbjct: 28 NKQKSNGQLNGNANGSSAPISGPSSQVDWPSSRSNSDTAINSTVATATKANGTTECSKAD 87
Query: 87 AVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSND--DPVIFD 144
+ +V G D+ Q NG + + +A RR E+S S SN +P+
Sbjct: 88 GNGRGYLNGYVKGNPDMSYGQANGAVPQNGGLTGQASRRT--ESSKRSGSNTSINPLQLA 145
Query: 145 TSIV 148
++I+
Sbjct: 146 STIL 149
>sp|Q02060|PSBS_SPIOL Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea
GN=PSBS PE=1 SV=1
Length = 274
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 161 EAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMS 193
E EL GR AMIGF + L + +TG G++ Q++
Sbjct: 97 ENELFVGRVAMIGFAASLLGEGITGKGILSQLN 129
>sp|Q9XF91|PSBS_ARATH Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis
thaliana GN=PSBS PE=1 SV=1
Length = 265
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 163 ELLNGRAAMIGFFMAYLVDSLTGVGLVDQMS 193
EL GR AMIGF + L ++LTG G++ Q++
Sbjct: 90 ELFVGRVAMIGFAASLLGEALTGKGILAQLN 120
>sp|Q92QG4|RS3_RHIME 30S ribosomal protein S3 OS=Rhizobium meliloti (strain 1021)
GN=rpsC PE=3 SV=1
Length = 237
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 175 FMAYLVDSLTGVGL---VDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEETT 228
AYL++ L G+ V + + C+ + A G+++ +K DIE L+K L E T
Sbjct: 39 IRAYLMEELKSAGIAKVVIERPHKKCRVTIHSARPGLIIGKKGADIEKLRKKLSEMT 95
>sp|C3MAY6|RS3_RHISN 30S ribosomal protein S3 OS=Rhizobium sp. (strain NGR234) GN=rpsC
PE=3 SV=1
Length = 237
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 177 AYLVDSLTGVGL---VDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEETT 228
AYL++ L G+ V + + C+ + A G+++ +K DIE L+K L E T
Sbjct: 41 AYLMEELKAAGIAKVVIERPHKKCRVTIHSARPGLIIGKKGADIEKLRKKLSEMT 95
>sp|A6U865|RS3_SINMW 30S ribosomal protein S3 OS=Sinorhizobium medicae (strain WSM419)
GN=rpsC PE=3 SV=1
Length = 237
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 177 AYLVDSLTGVGL---VDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEETT 228
AYL++ L G+ V + + C+ + A G+++ +K DIE L+K L E T
Sbjct: 41 AYLMEELKAAGIAKVVIERPHKKCRVTIHSARPGLIIGKKGADIEKLRKKLSEMT 95
>sp|P54773|PSBS_SOLLC Photosystem II 22 kDa protein, chloroplastic OS=Solanum
lycopersicum GN=PSBS PE=3 SV=1
Length = 276
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 163 ELLNGRAAMIGFFMAYLVDSLTGVGLVDQMS 193
EL GR AMIGF + L +++TG G++ Q++
Sbjct: 100 ELFVGRVAMIGFAASLLGEAITGKGILAQLN 130
>sp|Q9FPP4|PSBS_SOLSG Photosystem II 22 kDa protein, chloroplastic OS=Solanum
sogarandinum GN=PSBS PE=2 SV=1
Length = 276
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 163 ELLNGRAAMIGFFMAYLVDSLTGVGLVDQMS 193
EL GR AMIGF + L +++TG G++ Q++
Sbjct: 100 ELFVGRVAMIGFAASLLGEAITGKGILAQLN 130
>sp|P48367|YCF17_CYAPA Uncharacterized protein ycf17 OS=Cyanophora paradoxa GN=ycf17 PE=3
SV=1
Length = 49
Score = 32.0 bits (71), Expect = 3.9, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 162 AELLNGRAAMIGFFMAYLVDSLTGVG 187
AE NGR AM+GF A L +SLTG G
Sbjct: 16 AENWNGRLAMLGFIAALLTESLTGQG 41
>sp|Q9SMB4|PSBS_TOBAC Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum
GN=PSBS PE=2 SV=1
Length = 274
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 163 ELLNGRAAMIGFFMAYLVDSLTGVGLVDQMS 193
EL GR AMIGF + L +++TG G++ Q++
Sbjct: 98 ELFVGRVAMIGFAASLLGEAITGKGILAQLN 128
>sp|P27516|CBR_DUNBA Carotene biosynthesis-related protein CBR, chloroplastic
OS=Dunaliella bardawil GN=CBR PE=1 SV=1
Length = 172
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 141 VIFDT-SIVPWWAWIKRFHL----PEAELLNGRAAMIGFFMAYLVDSLTGVGL 188
V+F S++P +A K + P+AE+ NGR AMIGF + + + G+ L
Sbjct: 119 VLFSAASLIPAFARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQGIAL 171
>sp|A8MEI9|THIC_ALKOO Phosphomethylpyrimidine synthase OS=Alkaliphilus oremlandii (strain
OhILAs) GN=thiC PE=3 SV=1
Length = 437
Score = 31.2 bits (69), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 14/83 (16%)
Query: 57 PAVTVEEPKVREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGT--WDLKQFQKNGQTDW 114
PA + P + + EG S A A ++ K V G WDLK + + DW
Sbjct: 330 PAEHLRLPTLEDMKEGIIASKIAAHAGDL--------AKGVQGADEWDLKMSKARQKLDW 381
Query: 115 DAV----IDAEARRRKWLENSPE 133
+ + ID E RR E+SPE
Sbjct: 382 EEMFSLSIDDEKARRYRKESSPE 404
>sp|A7MPE7|RSMB_CROS8 Ribosomal RNA small subunit methyltransferase B OS=Cronobacter
sakazakii (strain ATCC BAA-894) GN=rsmB PE=3 SV=1
Length = 429
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 92 EDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARR-RKWLENSPESSSNDD 139
+D +W++ W L +FQ +W AV++A R WL + + S D+
Sbjct: 139 QDARWLHPMWLLNRFQTAWPREWQAVVEANNERPPMWLRVNRQHHSRDE 187
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,959,091
Number of Sequences: 539616
Number of extensions: 3864296
Number of successful extensions: 11024
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 10997
Number of HSP's gapped (non-prelim): 42
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)