Query 025671
Match_columns 249
No_of_seqs 173 out of 646
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 08:16:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00014 light-harvesting-like 100.0 3.8E-81 8.2E-86 556.8 16.3 242 5-248 2-248 (250)
2 PHA02337 putative high light i 99.3 1.5E-12 3.2E-17 87.6 3.7 31 160-190 3-33 (35)
3 PLN00084 photosystem II subuni 98.9 9E-10 1.9E-14 97.0 3.7 35 160-194 136-171 (214)
4 PLN00187 photosystem II light- 98.6 3.4E-08 7.3E-13 91.3 4.1 74 160-233 134-223 (286)
5 PF00504 Chloroa_b-bind: Chlor 98.6 1.6E-08 3.5E-13 82.8 1.5 74 160-233 30-121 (156)
6 PLN00170 photosystem II light- 98.5 1.4E-07 3.1E-12 86.0 5.4 77 160-236 96-203 (255)
7 PLN00048 photosystem I light h 98.5 1.2E-07 2.5E-12 86.7 4.0 75 160-234 86-199 (262)
8 PLN00101 Photosystem I light-h 98.3 5.6E-07 1.2E-11 81.9 3.1 59 160-218 92-161 (250)
9 PLN00098 light-harvesting comp 98.3 6.5E-07 1.4E-11 82.1 3.4 73 160-232 101-201 (267)
10 PLN00025 photosystem II light 98.1 1.9E-06 4.1E-11 78.9 3.4 72 160-232 92-193 (262)
11 PLN00097 photosystem I light h 98.1 1.8E-06 3.8E-11 78.5 2.9 59 160-218 83-153 (244)
12 PLN00147 light-harvesting comp 98.1 2.6E-06 5.6E-11 77.6 3.1 73 160-232 84-187 (252)
13 PLN00147 light-harvesting comp 97.9 1.1E-05 2.3E-10 73.7 4.4 38 160-197 201-238 (252)
14 PLN00171 photosystem light-ha 97.9 1E-05 2.2E-10 76.3 4.0 29 160-188 149-177 (324)
15 PLN00099 light-harvesting comp 97.9 1.1E-05 2.4E-10 73.2 3.6 72 160-232 83-173 (243)
16 PLN00100 light-harvesting comp 97.9 1E-05 2.2E-10 73.8 3.1 35 160-194 161-195 (246)
17 PF00504 Chloroa_b-bind: Chlor 97.8 2E-05 4.3E-10 64.7 3.1 23 160-182 134-156 (156)
18 PLN00089 fucoxanthin-chlorophy 97.7 1.9E-05 4.2E-10 70.0 3.1 31 160-190 178-208 (209)
19 PLN00101 Photosystem I light-h 97.7 1.7E-05 3.6E-10 72.4 2.3 38 160-197 201-238 (250)
20 PLN00099 light-harvesting comp 97.7 2.9E-05 6.3E-10 70.5 3.8 38 160-197 187-225 (243)
21 PLN00025 photosystem II light 97.7 2.9E-05 6.2E-10 71.3 3.5 38 160-197 207-244 (262)
22 PLN00048 photosystem I light h 97.6 3.7E-05 8.1E-10 70.5 3.4 38 160-197 211-248 (262)
23 PLN00098 light-harvesting comp 97.6 5.7E-05 1.2E-09 69.5 4.0 38 160-197 216-253 (267)
24 PLN00097 photosystem I light h 97.6 5.8E-05 1.3E-09 68.8 3.6 37 160-196 198-234 (244)
25 PLN00171 photosystem light-ha 97.5 7.2E-05 1.6E-09 70.7 4.0 38 160-197 274-311 (324)
26 PLN00187 photosystem II light- 97.5 8.2E-05 1.8E-09 69.2 3.9 38 160-197 236-273 (286)
27 PLN00120 fucoxanthin-chlorophy 97.3 0.00015 3.3E-09 64.0 3.2 30 160-189 169-199 (202)
28 PLN00100 light-harvesting comp 97.3 0.00023 5.1E-09 65.0 3.9 60 160-219 74-138 (246)
29 PLN00089 fucoxanthin-chlorophy 96.5 0.0023 4.9E-08 57.0 3.6 28 160-187 76-103 (209)
30 PLN00170 photosystem II light- 96.5 0.0013 2.7E-08 60.6 1.5 34 159-193 221-254 (255)
31 PLN00120 fucoxanthin-chlorophy 95.4 0.0045 9.8E-08 54.8 0.2 23 160-182 65-87 (202)
32 PLN02449 ferrochelatase 93.7 0.039 8.4E-07 54.8 2.2 23 169-191 463-485 (485)
33 PF04531 Phage_holin_1: Bacter 48.4 39 0.00085 26.2 4.5 42 169-210 15-63 (84)
34 KOG0033 Ca2+/calmodulin-depend 29.4 20 0.00044 34.7 0.4 72 161-235 165-237 (355)
35 KOG2735 Phosphatidylserine syn 25.2 1E+02 0.0022 31.3 4.2 63 162-224 90-156 (466)
36 PF06783 UPF0239: Uncharacteri 23.6 81 0.0018 25.4 2.7 25 188-212 17-44 (85)
37 COG3087 FtsN Cell division pro 22.0 37 0.0008 32.1 0.6 26 160-187 202-227 (264)
38 PF12911 OppC_N: N-terminal TM 20.7 98 0.0021 21.1 2.4 17 163-179 11-27 (56)
39 TIGR01598 holin_phiLC3 holin, 20.5 2.3E+02 0.005 22.2 4.6 42 169-210 14-60 (78)
No 1
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=100.00 E-value=3.8e-81 Score=556.79 Aligned_cols=242 Identities=57% Similarity=0.984 Sum_probs=206.4
Q ss_pred ccccccCCCC-CCCccCCccccccCcceeccCCC-cccchhhcccccCCCccC-CCcccccCCCccc--CCCCCCCCCCc
Q 025671 5 IDLLSFSPPP-SSMLSRTQFSFTHKPTFLLSSKK-ESFFTLRASAADNGAGVS-APAVTVEEPKVRE--ASEGPTESNGA 79 (249)
Q Consensus 5 ~~~~~fsp~~-~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~ve~p~~~~--~~~~~~~~~~a 79 (249)
++|++++++. +..+++|+ ..+++..+|++++ .+++...+++.+++..++ .++..++.++.+. +.-...+..++
T Consensus 2 ~~~sl~~~~~~~~~~~k~~--~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~pl~~gg~l~g~~a~gk~~~~aa~ 79 (250)
T PLN00014 2 ISMSLSRASSSTLVVSKPN--PQSRSSRSLGAKSEGSLVSVTVASTDGGGISERKPSPLERGGTLEGEAAAGKDPGPAAA 79 (250)
T ss_pred cccccCCCccccccccCCC--cccccccccccccccceEEEeecccCCCCccccCCCccccCCCcccccccccCcccccc
Confidence 5667777665 44457888 8899999999999 888888888888865443 2222333333222 11111222223
Q ss_pred ccCcccccCCCccCCceeccccccccccccCCCCcchhhHHHHHHhhhhhcCCCCCCCCCCceecCCCCCchhhhhccCC
Q 025671 80 VEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHL 159 (249)
Q Consensus 80 ~~~~~~~~~~~f~d~rw~~g~wdl~~F~~~g~~dwd~VI~AE~~~Rk~le~~P~assne~p~~fdts~vP~wgf~~~fg~ 159 (249)
+......++++|+||||+||||||+||++||+||||+|||||++||||+|+||++++|++|++||+|+||||.|+||||+
T Consensus 80 ~~~~~~~~~~~f~d~RW~~GtWDl~qF~~dG~~DWd~vIdaEv~rRK~LE~nPe~s~n~epv~FdtSiiPWWaW~~rf~l 159 (250)
T PLN00014 80 AKTSLAVSVGKFEDPRWKNGTWDLNQFKKDGKTDWDAVIDAEVVRRKWLEDNPETSSNDEPVLFDTSIIPWWAWVKRFHL 159 (250)
T ss_pred cccccccccccccCchhcCCcccHHHHhhcCCcchHHHHHHHHHHHHHHhhCccccCCCCCceeecccccHHHHHHhccC
Confidence 33334456899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHHHHHHHHHHhhhheeecccchHHHHhhcccccccchhhhcccc
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEETTFYDKQWQATWQ 239 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g~~Ll~vaVaG~llirkneDld~lk~L~~e~tfyDkqw~atw~ 239 (249)
+++|++|||+|||||++++++|++||+|+++|+|+++|++++|++|+|+++||||||||+||+|+||+||||||||||||
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f~~k~llfv~v~gvlliRk~eDl~~lk~L~dE~TfYDKQWqAtW~ 239 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNFFCKTLLFVTVAGVLLIRKNEDLDTLKKLADEATFYDKQWQATWK 239 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhhhhHHHHHHHHHHheeeeehhhHHHHHHHHHhhhhHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 025671 240 DETTSGAKK 248 (249)
Q Consensus 240 ~~~~~~~k~ 248 (249)
|++.+++++
T Consensus 240 ~~~~~s~~~ 248 (250)
T PLN00014 240 DQDRPSTSS 248 (250)
T ss_pred CCCCCCccc
Confidence 999987765
No 2
>PHA02337 putative high light inducible protein
Probab=99.31 E-value=1.5e-12 Score=87.60 Aligned_cols=31 Identities=45% Similarity=0.554 Sum_probs=29.1
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVD 190 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~ 190 (249)
++||+||||+|||||++++++|++|||+|..
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~ipG 33 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQIIPG 33 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCCCCC
Confidence 7899999999999999999999999998753
No 3
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.90 E-value=9e-10 Score=97.04 Aligned_cols=35 Identities=43% Similarity=0.691 Sum_probs=32.7
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHh-CCchhHhhhH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLT-GVGLVDQMSN 194 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~T-G~gil~Qlg~ 194 (249)
+..|+||||+||+||+++++.|++| |+|+++|++.
T Consensus 136 K~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ 171 (214)
T PLN00084 136 KPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNG 171 (214)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhcc
Confidence 3479999999999999999999999 9999999975
No 4
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=98.60 E-value=3.4e-08 Score=91.28 Aligned_cols=74 Identities=31% Similarity=0.481 Sum_probs=57.1
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhh-------hHHH---------HHHHHHHHHhhhheeecccchHHHHhh
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQM-------SNFF---------CKTLLFVAVVGVLLIRKNEDIETLKKL 223 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Ql-------g~~~---------g~~Ll~vaVaG~llirkneDld~lk~L 223 (249)
+++|++|||+||+|+++.++.|+++|....+.- ..|+ ....+-+.++|+++++|+.+.+..+.+
T Consensus 134 REaELiHGRwAMLAvaG~lvpEll~G~~W~~aG~~~~~~g~~y~g~~~p~~~~~l~~iqvllmG~~E~~R~~~~~~~~~~ 213 (286)
T PLN00187 134 RECELIHGRWAMLATLGALSVEALTGVTWQDAGKVELVDGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRL 213 (286)
T ss_pred HHHHhhhhHHHHHHhhchhhHHhccCCcccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Confidence 799999999999999999999998875321100 1122 122345668999999999998888999
Q ss_pred cccccccchh
Q 025671 224 LEETTFYDKQ 233 (249)
Q Consensus 224 ~~e~tfyDkq 233 (249)
|++..+||+-
T Consensus 214 yPGg~~FDPl 223 (286)
T PLN00187 214 YPGGKFFDPL 223 (286)
T ss_pred CCcccccccc
Confidence 9999889973
No 5
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=98.58 E-value=1.6e-08 Score=82.80 Aligned_cols=74 Identities=22% Similarity=0.180 Sum_probs=52.1
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCch----hHhh-----h---HHHHHHHHHHHHhhhheeecccchH------HHH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGL----VDQM-----S---NFFCKTLLFVAVVGVLLIRKNEDIE------TLK 221 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gi----l~Ql-----g---~~~g~~Ll~vaVaG~llirkneDld------~lk 221 (249)
+++|++|||+||+||++.++.|+.++.+. .+|. + ......+..++++|++.+.+..+.. ...
T Consensus 30 R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~~~~ 109 (156)
T PF00504_consen 30 REAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGGIPVPAAGWAQILLFIGALEPWRQQGVPEPGEGGGKD 109 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTSSSSHSHHHHHHHHHHHHHHHHHHHHTTTCCTTSSSS
T ss_pred HHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhhhhhhhHHHHHHHHHHhHhhhhhcccccCCccccccc
Confidence 89999999999999999999999998643 2222 1 1222334666777887777666542 234
Q ss_pred hhcccccccchh
Q 025671 222 KLLEETTFYDKQ 233 (249)
Q Consensus 222 ~L~~e~tfyDkq 233 (249)
..+++...||+-
T Consensus 110 ~~~pG~~~~dpl 121 (156)
T PF00504_consen 110 GRYPGDLGFDPL 121 (156)
T ss_dssp SSSSSSSSSSTS
T ss_pred ccCccccccchh
Confidence 567777778875
No 6
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=98.50 E-value=1.4e-07 Score=85.98 Aligned_cols=77 Identities=19% Similarity=0.176 Sum_probs=57.4
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhH--------HHHHHHHHHHHhhhheeecccchHH------------
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSN--------FFCKTLLFVAVVGVLLIRKNEDIET------------ 219 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~--------~~g~~Ll~vaVaG~llirkneDld~------------ 219 (249)
.++|+.|||+||+|+++.++.|++||...++.-.. +...+.+.+.++|.++.+|..|+.+
T Consensus 96 r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~aG~~~~~~~p~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~ 175 (255)
T PLN00170 96 REAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPW 175 (255)
T ss_pred HHHHhhccHHHHHHHHhhhhHHHccCCChhhCCccccccCccchHHHHHHHHHHhhhhhheeeccccCCccccccccccc
Confidence 78999999999999999999999999887664321 1122334577899999999877531
Q ss_pred -----------HHhhcccccccchhhhc
Q 025671 220 -----------LKKLLEETTFYDKQWQA 236 (249)
Q Consensus 220 -----------lk~L~~e~tfyDkqw~a 236 (249)
-...|+++.||||-=-+
T Consensus 176 ~~~~~~f~~~~g~~~yPGG~~FDPLGl~ 203 (255)
T PLN00170 176 SRTAENFANATGLQGYPGGKFFDPLGLA 203 (255)
T ss_pred ccccccccccCCCcccCCCcccCccccc
Confidence 02458888899985433
No 7
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=98.47 E-value=1.2e-07 Score=86.67 Aligned_cols=75 Identities=24% Similarity=0.349 Sum_probs=55.9
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhh----------------HH----HHHHHHHHHHhhhheeecccchHH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMS----------------NF----FCKTLLFVAVVGVLLIRKNEDIET 219 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg----------------~~----~g~~Ll~vaVaG~llirkneDld~ 219 (249)
+++|++|||+||+|+++.++.|++++.|++.+.. .| ....++.+.++|+++++|.+|+.+
T Consensus 86 r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p~~l~~~~~~lmg~~E~~R~~~~~~ 165 (262)
T PLN00048 86 AYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYK 165 (262)
T ss_pred HHHHhhcchHHHHHHhhHHHHHHhccCCccccccccccccccccccccccccccchhHHHHHHHHHhhheeeeccccccC
Confidence 6899999999999999999999999888764321 01 123356667899999999887421
Q ss_pred --------H-----------Hhhcccccccchhh
Q 025671 220 --------L-----------KKLLEETTFYDKQW 234 (249)
Q Consensus 220 --------l-----------k~L~~e~tfyDkqw 234 (249)
+ ..+||+..+||+--
T Consensus 166 pG~~~~~~~~~~~~~~~~~~d~~yPG~~~fDPlG 199 (262)
T PLN00048 166 PGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLG 199 (262)
T ss_pred CCcccccccccchhccccccccccccccccCccc
Confidence 1 23688887888843
No 8
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=98.25 E-value=5.6e-07 Score=81.89 Aligned_cols=59 Identities=29% Similarity=0.478 Sum_probs=45.1
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhHh-----hhH--HHH----HHHHHHHHhhhheeecccchH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQ-----MSN--FFC----KTLLFVAVVGVLLIRKNEDIE 218 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Q-----lg~--~~g----~~Ll~vaVaG~llirkneDld 218 (249)
.++|+.|||+||+|+++.++.|++|+.|++.+ .+. +++ ...+.+.++|+++++|.+|+.
T Consensus 92 r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~p~w~~ag~~~~~~~~~~l~~ie~~~mg~~E~~R~~~~~ 161 (250)
T PLN00101 92 VQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIK 161 (250)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhcCCCCcCCCccccccchhhcccchHHHHHHHHHHHHHHHHHhhccc
Confidence 78999999999999999999999999987631 121 222 223346788999999987754
No 9
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=98.25 E-value=6.5e-07 Score=82.12 Aligned_cols=73 Identities=16% Similarity=0.280 Sum_probs=52.6
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhh-----hH--H----HHHHHHHHHHhhhheeecccchHH-----H---
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQM-----SN--F----FCKTLLFVAVVGVLLIRKNEDIET-----L--- 220 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Ql-----g~--~----~g~~Ll~vaVaG~llirkneDld~-----l--- 220 (249)
.++|++|||+||+|+++.++.|++++.|++... +. + .....+.+.++|+++++|.+|+.+ +
T Consensus 101 r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~ 180 (267)
T PLN00098 101 AQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPK 180 (267)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHHHHHHHHHHHHHHHHHhhcccCCcccccccc
Confidence 789999999999999999999999988775522 11 1 112234455789999988766421 1
Q ss_pred ---------Hhhcccccccch
Q 025671 221 ---------KKLLEETTFYDK 232 (249)
Q Consensus 221 ---------k~L~~e~tfyDk 232 (249)
...||+.-+|||
T Consensus 181 ~~~~~~~~~d~~yPGg~~FDP 201 (267)
T PLN00098 181 LPNKTNPKPDVGYPGGLWFDP 201 (267)
T ss_pred ccccccCCCCCCCCCCccCCc
Confidence 235788877887
No 10
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=98.11 E-value=1.9e-06 Score=78.93 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=50.6
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchh-H------------------hhh--------HHHHHHHHHHHHhhhheee
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLV-D------------------QMS--------NFFCKTLLFVAVVGVLLIR 212 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil-~------------------Qlg--------~~~g~~Ll~vaVaG~llir 212 (249)
.++|++|||+||+|+++.++.|++++.++. . .++ .......+.+.++|+++.+
T Consensus 92 re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~ 171 (262)
T PLN00025 92 RELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 171 (262)
T ss_pred HHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCcccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999876652 1 111 0112223455568999988
Q ss_pred cccchH---HHHhhcccccccch
Q 025671 213 KNEDIE---TLKKLLEETTFYDK 232 (249)
Q Consensus 213 kneDld---~lk~L~~e~tfyDk 232 (249)
|..+.. ....+||+.. ||+
T Consensus 172 r~~~~~~~~~~d~~yPG~~-FDP 193 (262)
T PLN00025 172 RVNGGPLGEGLDPLYPGGS-FDP 193 (262)
T ss_pred cccCCcccccccCcCCccc-CCc
Confidence 876632 1234899886 887
No 11
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=98.10 E-value=1.8e-06 Score=78.51 Aligned_cols=59 Identities=25% Similarity=0.379 Sum_probs=42.8
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhH---h--hhH---HH----HHHHHHHHHhhhheeecccchH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVD---Q--MSN---FF----CKTLLFVAVVGVLLIRKNEDIE 218 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~---Q--lg~---~~----g~~Ll~vaVaG~llirkneDld 218 (249)
.++|+.|||+||+|+++.++.|++++.++.. . .+. ++ ..+.+.+.++|.++++|..|+.
T Consensus 83 r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~~p~W~~Ag~~~~~~~~~~~l~~i~~~lmg~~E~~r~~~~~ 153 (244)
T PLN00097 83 VQAELMHARWAMLGLAGCVAPELLTKIGMADLPNWIDAAKWDGYWAGAGPLFFIQMAMFNWAEIRRWQDMK 153 (244)
T ss_pred HHHHHhcchHHHHHHhhhhHHHHhcCCCcccCCccccCCcchhccccchhHHHHHHHHHHHHHHHHhhccc
Confidence 6899999999999999999999999887631 1 110 11 1233455568889998877653
No 12
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=98.05 E-value=2.6e-06 Score=77.64 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=49.5
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhH-----hhh-------HHHHHHHHHHHHhhhheeecccchH---------
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVD-----QMS-------NFFCKTLLFVAVVGVLLIRKNEDIE--------- 218 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~-----Qlg-------~~~g~~Ll~vaVaG~llirkneDld--------- 218 (249)
.++|+.|||+||+|+++.++.|+++..++.. ..+ ......++.+.++|+++.+|..+..
T Consensus 84 r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~~p~w~~ag~~~~~~~~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g 163 (252)
T PLN00147 84 VQAELVHSRFAMAGVAGILFTDLLRVTGIRNLPVWYEAGAVKFEFASTRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEG 163 (252)
T ss_pred HHHHhhccHHHHHHHhhhhHHHHhccCCCcCCcchhhcccchhccccchHHHHHHHHHHHHHHHHhhccccCCCcccccc
Confidence 7899999999999999999999998766421 111 1111223345688999988754432
Q ss_pred ----------HHHhhcccccccch
Q 025671 219 ----------TLKKLLEETTFYDK 232 (249)
Q Consensus 219 ----------~lk~L~~e~tfyDk 232 (249)
.++.-|++...|||
T Consensus 164 ~~~g~~~~~~~~~~~yPGd~~FDP 187 (252)
T PLN00147 164 SFFGLEAALEGLEPGYPGGPLFNP 187 (252)
T ss_pred ccccccccccccCCCCcccccCCc
Confidence 12344888877887
No 13
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=97.91 E-value=1.1e-05 Score=73.65 Aligned_cols=38 Identities=26% Similarity=0.428 Sum_probs=34.4
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFC 197 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g 197 (249)
+..|+.|||+||+|+++.++.|++||+|.++++...+.
T Consensus 201 k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hla 238 (252)
T PLN00147 201 KLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLS 238 (252)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence 56899999999999999999999999999999876544
No 14
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=97.90 E-value=1e-05 Score=76.29 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=26.3
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCch
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGL 188 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gi 188 (249)
.++|++|||+||+|+++.++.|++++.+.
T Consensus 149 reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 149 FNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred HHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 78999999999999999999999886554
No 15
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=97.86 E-value=1.1e-05 Score=73.21 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=47.5
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCch-------------hHhhhH------HHHHHHHHHHHhhhheeecccchHHH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGL-------------VDQMSN------FFCKTLLFVAVVGVLLIRKNEDIETL 220 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gi-------------l~Qlg~------~~g~~Ll~vaVaG~llirkneDld~l 220 (249)
+++|++|||+||+|+++.++.|+++.-.. ....+. ......+.+.++|++++.|....+..
T Consensus 83 r~~ELkHGR~AMLAv~G~i~~E~l~~~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~~~~~~ 162 (243)
T PLN00099 83 KESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPE 162 (243)
T ss_pred HHHhccCCcHHHHHHhhHHHHHHhccCCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 68999999999999999999999653111 111111 01112233557888888665444445
Q ss_pred Hhhcccccccch
Q 025671 221 KKLLEETTFYDK 232 (249)
Q Consensus 221 k~L~~e~tfyDk 232 (249)
++.|++. .||+
T Consensus 163 ~~~yPGd-~FDP 173 (243)
T PLN00099 163 KKKYPGG-AFDP 173 (243)
T ss_pred CCcCCCC-cCCc
Confidence 6789998 7887
No 16
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=97.85 E-value=1e-05 Score=73.81 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=33.1
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSN 194 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~ 194 (249)
+..|+.|||+|||+|++.++.+++||+|.++++..
T Consensus 161 K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~ 195 (246)
T PLN00100 161 KVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKA 195 (246)
T ss_pred HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHH
Confidence 68999999999999999999999999999999865
No 17
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=97.76 E-value=2e-05 Score=64.68 Aligned_cols=23 Identities=39% Similarity=0.403 Sum_probs=21.0
Q ss_pred chhHHhHHHHHHHHHHHHHHHHH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDS 182 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl 182 (249)
+.+|++|||+|||||++.++.|.
T Consensus 134 ~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 134 QLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 88999999999999999998873
No 18
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=97.75 E-value=1.9e-05 Score=70.04 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=28.4
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVD 190 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~ 190 (249)
...|+.|||+||||+++.++.|++||++++.
T Consensus 178 ~~~El~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 178 KDKELKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 4579999999999999999999999999864
No 19
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=97.72 E-value=1.7e-05 Score=72.40 Aligned_cols=38 Identities=32% Similarity=0.501 Sum_probs=34.5
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFC 197 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g 197 (249)
+..|+.||||||++|++.++.++.||+|.++++...+.
T Consensus 201 k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hla 238 (250)
T PLN00101 201 KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLS 238 (250)
T ss_pred HHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhc
Confidence 66899999999999999999999999999999876543
No 20
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=97.71 E-value=2.9e-05 Score=70.49 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=33.4
Q ss_pred chhHHhHHHHHHHHHHHHHHHH-HHhCCchhHhhhHHHH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVD-SLTGVGLVDQMSNFFC 197 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vE-l~TG~gil~Qlg~~~g 197 (249)
+..|+.|||+|||||++.++.| ..||++.++++...+.
T Consensus 187 k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hla 225 (243)
T PLN00099 187 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 225 (243)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhc
Confidence 6789999999999999999999 5799999999876544
No 21
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=97.70 E-value=2.9e-05 Score=71.32 Aligned_cols=38 Identities=26% Similarity=0.498 Sum_probs=34.7
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFC 197 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g 197 (249)
+..|+.|||+||+++++.++.+++||+|.++++...+.
T Consensus 207 k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hla 244 (262)
T PLN00025 207 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 244 (262)
T ss_pred HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhc
Confidence 67899999999999999999999999999999876544
No 22
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=97.64 E-value=3.7e-05 Score=70.46 Aligned_cols=38 Identities=26% Similarity=0.442 Sum_probs=34.2
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFC 197 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g 197 (249)
...|+.|||+||+++++.++.+++||+|.++++...+.
T Consensus 211 k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hla 248 (262)
T PLN00048 211 KLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLA 248 (262)
T ss_pred HHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhc
Confidence 56899999999999999999999999999999865443
No 23
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=97.60 E-value=5.7e-05 Score=69.53 Aligned_cols=38 Identities=26% Similarity=0.425 Sum_probs=34.3
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFC 197 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g 197 (249)
...|+.|||+|||++++.++.+.+||+|.++++...+.
T Consensus 216 k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hla 253 (267)
T PLN00098 216 RTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLA 253 (267)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhc
Confidence 66899999999999999999999999999999865443
No 24
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=97.57 E-value=5.8e-05 Score=68.76 Aligned_cols=37 Identities=32% Similarity=0.446 Sum_probs=33.9
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFF 196 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~ 196 (249)
+..|+.|||+||++|++.++.++.||+|.++++...+
T Consensus 198 k~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~Hl 234 (244)
T PLN00097 198 KLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHL 234 (244)
T ss_pred HHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHh
Confidence 6799999999999999999999999999999986544
No 25
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=97.55 E-value=7.2e-05 Score=70.65 Aligned_cols=38 Identities=29% Similarity=0.525 Sum_probs=33.8
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFC 197 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g 197 (249)
...|+.|||+||+|+++.++.+.+||++.++++...+.
T Consensus 274 k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hla 311 (324)
T PLN00171 274 KVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLS 311 (324)
T ss_pred HHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhc
Confidence 55799999999999999999999999999999865443
No 26
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=97.52 E-value=8.2e-05 Score=69.15 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=34.3
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFC 197 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g 197 (249)
...|+.|||+||+++++.++.+.+||+|.++++...+.
T Consensus 236 k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hla 273 (286)
T PLN00187 236 QLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLS 273 (286)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence 67899999999999999999999999999998866543
No 27
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=97.34 E-value=0.00015 Score=64.02 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=26.4
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCC-chh
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGV-GLV 189 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~-gil 189 (249)
...|+-|||+||||+++.++.|.++|. .++
T Consensus 169 ~~~EL~NGRLAMiai~G~~~qe~l~g~~~~~ 199 (202)
T PLN00120 169 RAIELNQGRAAQMGILALMVHEQLGVELPII 199 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCcCC
Confidence 468999999999999999999999995 443
No 28
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=97.29 E-value=0.00023 Score=65.03 Aligned_cols=60 Identities=25% Similarity=0.237 Sum_probs=40.1
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhh-----HHHHHHHHHHHHhhhheeecccchHH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMS-----NFFCKTLLFVAVVGVLLIRKNEDIET 219 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg-----~~~g~~Ll~vaVaG~llirkneDld~ 219 (249)
.++|+.|||+||+|+++.++.|+++.-+..+... .......+-+.++|+++++|..++..
T Consensus 74 r~aEl~hGR~AMla~~G~~~~E~~~~P~w~~ag~~~~~~~~~~l~~iqill~g~~E~~r~~~~~~ 138 (246)
T PLN00100 74 QEAELMNGRWAMAATAGILFTDAVGLPKFWEAGAEKYGLDLQTLVLIQVVVMAVLEAARYRGFMK 138 (246)
T ss_pred HHHHhhcchHHHHHHhhhhHHHHhcccchhhcchhhhccchhHHHHHHHHHHHHHhhhccccccc
Confidence 7899999999999999999999964322222111 11112233344689999988877643
No 29
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=96.54 E-value=0.0023 Score=57.03 Aligned_cols=28 Identities=36% Similarity=0.315 Sum_probs=25.2
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCc
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVG 187 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~g 187 (249)
+++|+.|||+||+++++.++.|.++.-|
T Consensus 76 r~~ElkhGR~AMlA~~G~~~~~~~~~pG 103 (209)
T PLN00089 76 RESELKHGRAAMLAVAGFIAPDFVRIPG 103 (209)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHcCCC
Confidence 6899999999999999999999977544
No 30
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=96.45 E-value=0.0013 Score=60.58 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=29.7
Q ss_pred CchhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhh
Q 025671 159 LPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMS 193 (249)
Q Consensus 159 ~~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg 193 (249)
++..|+.|||+||++|++.++.- .||+|-++.++
T Consensus 221 lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 221 LKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred HHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 37899999999999999888766 79999998875
No 31
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=95.38 E-value=0.0045 Score=54.82 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=21.7
Q ss_pred chhHHhHHHHHHHHHHHHHHHHH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDS 182 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl 182 (249)
+++|+.|||+||+++++.++.|.
T Consensus 65 r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 65 RYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred HHHHhhcccHHHHhhccceeecc
Confidence 68999999999999999999996
No 32
>PLN02449 ferrochelatase
Probab=93.66 E-value=0.039 Score=54.78 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhCCchhHh
Q 025671 169 AAMIGFFMAYLVDSLTGVGLVDQ 191 (249)
Q Consensus 169 lAMIGFv~al~vEl~TG~gil~Q 191 (249)
+||+||++.++.|++||+|.+++
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~ 485 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNLHQ 485 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcCCC
Confidence 99999999999999999998864
No 33
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=48.37 E-value=39 Score=26.16 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHH--hCC-----chhHhhhHHHHHHHHHHHHhhhhe
Q 025671 169 AAMIGFFMAYLVDSL--TGV-----GLVDQMSNFFCKTLLFVAVVGVLL 210 (249)
Q Consensus 169 lAMIGFv~al~vEl~--TG~-----gil~Qlg~~~g~~Ll~vaVaG~ll 210 (249)
+|+++.+..++..+. +|- .+.+|+......++.+++++|++-
T Consensus 15 ~ali~~i~l~vq~~~~~fg~~~~~~~~~~~i~~~v~~vl~iL~~~Gii~ 63 (84)
T PF04531_consen 15 VALISAILLLVQQVGGLFGWGADFDVLLDQISNIVNAVLTILVILGIIN 63 (84)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHheeee
Confidence 577777777766553 455 456677777777788888888874
No 34
>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=29.44 E-value=20 Score=34.65 Aligned_cols=72 Identities=15% Similarity=0.336 Sum_probs=56.0
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHHHHHHHHHHhhhheeecccchHHHHhhcccccccch-hhh
Q 025671 161 EAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFCKTLLFVAVVGVLLIRKNEDIETLKKLLEETTFYDK-QWQ 235 (249)
Q Consensus 161 ~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g~~Ll~vaVaG~llirkneDld~lk~L~~e~tfyDk-qw~ 235 (249)
.-+.|-||+..=||++ -|++.....-.-+..|-|.+.+++.++|+..|-....-+...++..+.--||. ||-
T Consensus 165 ~g~~~~G~~GtP~fma---PEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~rlye~I~~g~yd~~~~~w~ 237 (355)
T KOG0033|consen 165 DGEAWHGFAGTPGYLS---PEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYEQIKAGAYDYPSPEWD 237 (355)
T ss_pred CccccccccCCCcccC---HHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHHHHHHHHhccccCCCCcccC
Confidence 4567777777666654 67777666666677888889999999999999987777777888888877887 874
No 35
>KOG2735 consensus Phosphatidylserine synthase [Lipid transport and metabolism]
Probab=25.22 E-value=1e+02 Score=31.32 Aligned_cols=63 Identities=21% Similarity=0.334 Sum_probs=47.5
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHhCCchhHhhh----HHHHHHHHHHHHhhhheeecccchHHHHhhc
Q 025671 162 AELLNGRAAMIGFFMAYLVDSLTGVGLVDQMS----NFFCKTLLFVAVVGVLLIRKNEDIETLKKLL 224 (249)
Q Consensus 162 AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg----~~~g~~Ll~vaVaG~llirkneDld~lk~L~ 224 (249)
--.+-|=+|||.++.++.+-.+-.-.+..-.- ..+|..++-+.++-+++|++.+|+..+-+-+
T Consensus 90 ~N~~rGil~~i~~FL~~svlafpngpF~RPHPa~WR~vfg~SViYll~L~FlLFQ~~~d~r~~l~wl 156 (466)
T KOG2735|consen 90 TNVKRGILAMIAVFLIISVLAFPNGPFIRPHPALWRIVFGVSVIYLLFLQFLLFQTFDDIRQFLKWL 156 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHhHHHHHHHHHHHHHhhhHHHHhHheee
Confidence 35688999999999998887776666665443 3467666777778899999999988765443
No 36
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=23.58 E-value=81 Score=25.36 Aligned_cols=25 Identities=8% Similarity=0.349 Sum_probs=19.9
Q ss_pred hhHhh---hHHHHHHHHHHHHhhhheee
Q 025671 188 LVDQM---SNFFCKTLLFVAVVGVLLIR 212 (249)
Q Consensus 188 il~Ql---g~~~g~~Ll~vaVaG~llir 212 (249)
+++++ |.|+|.++-+++|+.+++.-
T Consensus 17 ~~e~llRYGLf~GAIFQliCilAiI~~~ 44 (85)
T PF06783_consen 17 FFENLLRYGLFVGAIFQLICILAIILPI 44 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeec
Confidence 44544 88999999999999888864
No 37
>COG3087 FtsN Cell division protein [Cell division and chromosome partitioning]
Probab=21.95 E-value=37 Score=32.11 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=19.7
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCc
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVG 187 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~g 187 (249)
..||..-+||||+||-+=|-. .+|.+
T Consensus 202 ~qAE~~rA~LAmlG~sskI~~--~~~~~ 227 (264)
T COG3087 202 EQAESVRAQLAMLGISSKITG--VTNGG 227 (264)
T ss_pred HHHHHHHHHHHhccccceeEe--ecCCc
Confidence 789999999999999765432 34444
No 38
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=20.66 E-value=98 Score=21.10 Aligned_cols=17 Identities=18% Similarity=0.473 Sum_probs=12.8
Q ss_pred HHhHHHHHHHHHHHHHH
Q 025671 163 ELLNGRAAMIGFFMAYL 179 (249)
Q Consensus 163 El~NGRlAMIGFv~al~ 179 (249)
+...-|+||+|+++.++
T Consensus 11 ~f~~nk~a~~gl~il~~ 27 (56)
T PF12911_consen 11 RFRRNKLAVIGLIILLI 27 (56)
T ss_pred HHHhCchHHHHHHHHHH
Confidence 45567899999887664
No 39
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=20.47 E-value=2.3e+02 Score=22.21 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHH--HhCC---chhHhhhHHHHHHHHHHHHhhhhe
Q 025671 169 AAMIGFFMAYLVDS--LTGV---GLVDQMSNFFCKTLLFVAVVGVLL 210 (249)
Q Consensus 169 lAMIGFv~al~vEl--~TG~---gil~Qlg~~~g~~Ll~vaVaG~ll 210 (249)
.|+++-+..++... .-|. .+.+|+......++.+++++|++.
T Consensus 14 ~ali~al~l~~q~v~~~fG~~~~~~~~~l~~~i~~v~~lL~~lGii~ 60 (78)
T TIGR01598 14 IALLGALFLAIQSILDNFGVLWLSFNRQLNAPIAAITTILAVVGIIM 60 (78)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 45555555553333 3344 345566666777777788888654
Done!