Query 025671
Match_columns 249
No_of_seqs 173 out of 646
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 15:05:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025671.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025671hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pl9_A Chlorophyll A-B binding 98.5 5.4E-08 1.9E-12 86.9 5.3 73 160-233 93-181 (243)
2 2bhw_A Chlorophyll A-B binding 98.3 5.1E-07 1.8E-11 79.4 5.0 38 160-197 177-214 (232)
3 3pl9_A Chlorophyll A-B binding 98.2 1.3E-06 4.5E-11 78.0 5.1 38 160-197 194-231 (243)
4 2wsc_4 Chlorophyll A-B binding 98.0 1.1E-07 3.7E-12 84.8 -5.4 31 160-190 92-122 (251)
5 2wsc_3 LHCA3, type II chloroph 97.9 1.2E-06 4E-11 79.3 -0.8 38 160-197 225-262 (276)
6 2wsc_2 LHCA2, type II chloroph 97.8 1.3E-06 4.5E-11 78.7 -1.6 35 159-193 217-251 (269)
7 2wsc_3 LHCA3, type II chloroph 97.8 1.1E-07 3.6E-12 86.1 -8.7 58 160-217 100-177 (276)
8 2wsc_2 LHCA2, type II chloroph 97.7 2.8E-06 9.5E-11 76.6 -1.5 30 160-189 103-132 (269)
9 2bhw_A Chlorophyll A-B binding 97.6 1.9E-05 6.6E-10 69.4 2.3 26 160-185 62-87 (232)
10 2wsc_1 AT3G54890, LHCA1; photo 97.6 5.7E-06 1.9E-10 73.5 -1.3 36 159-194 187-223 (241)
11 2wsc_1 AT3G54890, LHCA1; photo 97.4 4.3E-06 1.5E-10 74.3 -4.3 73 160-233 84-175 (241)
12 2wsc_4 Chlorophyll A-B binding 97.3 3.1E-05 1.1E-09 69.0 -0.7 35 159-194 200-234 (251)
13 1pfi_A Major coat protein of P 30.6 64 0.0022 22.3 3.9 31 180-210 10-40 (46)
No 1
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=98.55 E-value=5.4e-08 Score=86.88 Aligned_cols=73 Identities=30% Similarity=0.456 Sum_probs=55.7
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhH---h--------hh-----HHHHHHHHHHHHhhhheeecccchHHHHhh
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVD---Q--------MS-----NFFCKTLLFVAVVGVLLIRKNEDIETLKKL 223 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~---Q--------lg-----~~~g~~Ll~vaVaG~llirkneDld~lk~L 223 (249)
+++|++|||+||+|+++.++.|+++|....+ + .+ .......+-++++|+++++|..+++..+.+
T Consensus 93 ReaELkHGRwAMLAvlG~lvpE~l~g~~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv~lmG~~E~~R~~~~~~~~~~ 172 (243)
T 3pl9_A 93 RECELIHGRWAMLATLGALTVEGLTGITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELDTEKRL 172 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCTTTHHHHHHHSCEEETTEEECCCHHHHHHHHHHHHHHHHHHHHSCCCTTTTT
T ss_pred HHhhhhcchhHHHHHHHHHhHHhhcCcccccccccccccccccccCccchhhHHHHHHHHHHHHHHHHHhhcccCCcccc
Confidence 8999999999999999999999998743221 0 00 011223445678999999999999888889
Q ss_pred cccccccchh
Q 025671 224 LEETTFYDKQ 233 (249)
Q Consensus 224 ~~e~tfyDkq 233 (249)
|++.- ||+-
T Consensus 173 ~PG~~-FDPL 181 (243)
T 3pl9_A 173 YPGGT-FDPL 181 (243)
T ss_dssp CCCGG-GCTT
T ss_pred CCCcc-hhhc
Confidence 99875 8875
No 2
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=98.30 E-value=5.1e-07 Score=79.41 Aligned_cols=38 Identities=29% Similarity=0.509 Sum_probs=34.7
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFC 197 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g 197 (249)
+.+|+.|||+|||||++.++.|++||+++++|+...+.
T Consensus 177 ~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~a 214 (232)
T 2bhw_A 177 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 214 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHH
T ss_pred HHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence 68999999999999999999999999999999876543
No 3
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=98.18 E-value=1.3e-06 Score=78.01 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=34.8
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFC 197 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g 197 (249)
+.+|+.|||+|||||++.++.|++||+|.++|+...+.
T Consensus 194 r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~Hla 231 (243)
T 3pl9_A 194 QLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLS 231 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence 68999999999999999999999999999999876543
No 4
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=98.01 E-value=1.1e-07 Score=84.84 Aligned_cols=31 Identities=39% Similarity=0.640 Sum_probs=29.2
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVD 190 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~ 190 (249)
+++|++|||+||+|+++.++.|++++.|++.
T Consensus 92 r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~ 122 (251)
T 2wsc_4 92 VQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122 (251)
T ss_dssp HHHHHHHTHHHHHHHTTSSTTSSSCCSCSSC
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCccC
Confidence 7999999999999999999999999988774
No 5
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=97.90 E-value=1.2e-06 Score=79.33 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=31.1
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhHHHH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSNFFC 197 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~~~g 197 (249)
+.+|+.|||+|||||++.++.|++||+++++|+...+.
T Consensus 225 r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~Hla 262 (276)
T 2wsc_3 225 KLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLT 262 (276)
T ss_dssp CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC------
T ss_pred HHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhcc
Confidence 78999999999999999999999999999998865443
No 6
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=97.83 E-value=1.3e-06 Score=78.75 Aligned_cols=35 Identities=34% Similarity=0.539 Sum_probs=32.8
Q ss_pred CchhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhh
Q 025671 159 LPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMS 193 (249)
Q Consensus 159 ~~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg 193 (249)
++.+|+.|||+|||||++.++.|++||+|+++++.
T Consensus 217 ~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~ 251 (269)
T 2wsc_2 217 LRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 251 (269)
T ss_dssp STTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred HHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 37899999999999999999999999999998875
No 7
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=97.83 E-value=1.1e-07 Score=86.06 Aligned_cols=58 Identities=29% Similarity=0.433 Sum_probs=41.6
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhHh------h--------h--HHHH----HHHHHHHHhhhheeecccch
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQ------M--------S--NFFC----KTLLFVAVVGVLLIRKNEDI 217 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Q------l--------g--~~~g----~~Ll~vaVaG~llirkneDl 217 (249)
.++|++|||+||+|+++.++.|++++.|++.+ . + .+++ ..++.++++|++++++..|+
T Consensus 100 r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~~~~~p~~w~~~g~ip~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~~ 177 (276)
T 2wsc_3 100 AYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDW 177 (276)
T ss_dssp HHHHHHHHTTSCCTTTSTTSCSSCSSCCCCCCSSCCSSSSCCCC-----CCCSCCCCSTTHHHHHHTHHHHTTTTTGG
T ss_pred HHHHhhcccchhhhHHHHHHHHHhcccccccccCcchhhhhhcccchhHHHHhccchHHHHHHHHHHHHHHHhhhccc
Confidence 79999999999999999999999999886621 0 1 0111 11234467888888876653
No 8
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=97.72 E-value=2.8e-06 Score=76.60 Aligned_cols=30 Identities=33% Similarity=0.512 Sum_probs=28.1
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchh
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLV 189 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil 189 (249)
.++|+.|||+||+|+++.++.|++++.|++
T Consensus 103 r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 103 VQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp HHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred HHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 799999999999999999999999987765
No 9
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=97.60 E-value=1.9e-05 Score=69.42 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=24.4
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhC
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTG 185 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG 185 (249)
+++|++|||+||+|+++.++.|+++.
T Consensus 62 ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 62 RELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccchHHHhhhhhhhHHHhcc
Confidence 79999999999999999999999764
No 10
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=97.60 E-value=5.7e-06 Score=73.54 Aligned_cols=36 Identities=25% Similarity=0.478 Sum_probs=32.4
Q ss_pred CchhHHhHHHHHHHHHHHHHHHH-HHhCCchhHhhhH
Q 025671 159 LPEAELLNGRAAMIGFFMAYLVD-SLTGVGLVDQMSN 194 (249)
Q Consensus 159 ~~~AEl~NGRlAMIGFv~al~vE-l~TG~gil~Qlg~ 194 (249)
++.+|+.|||+|||||++.++.| ++||+|.+++++.
T Consensus 187 ~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~ 223 (241)
T 2wsc_1 187 LKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 223 (241)
T ss_dssp SCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSC
T ss_pred HHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHH
Confidence 37899999999999999999999 5899999998754
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=97.43 E-value=4.3e-06 Score=74.32 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=47.2
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHhCCchhH-------------hh------hHHHHHHHHHHHHhhhheeecccchHHH
Q 025671 160 PEAELLNGRAAMIGFFMAYLVDSLTGVGLVD-------------QM------SNFFCKTLLFVAVVGVLLIRKNEDIETL 220 (249)
Q Consensus 160 ~~AEl~NGRlAMIGFv~al~vEl~TG~gil~-------------Ql------g~~~g~~Ll~vaVaG~llirkneDld~l 220 (249)
+++|+.|||+||+|+++.++.|+++...+.+ .+ +.......+.+.++|+++.+|..+.+..
T Consensus 84 r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~~~~~ 163 (241)
T 2wsc_1 84 KESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPE 163 (241)
T ss_dssp HHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSCCSSC
T ss_pred HHHHHhhchhHHhhhhcccchhhccCCccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 7899999999999999999999854321110 00 0111112233456788887776665556
Q ss_pred Hhhcccccccchh
Q 025671 221 KKLLEETTFYDKQ 233 (249)
Q Consensus 221 k~L~~e~tfyDkq 233 (249)
+..|+++ +||+-
T Consensus 164 ~~~yPgg-~fDPl 175 (241)
T 2wsc_1 164 KKKYPGG-AFDPL 175 (241)
T ss_dssp CSSSCSC-CSCSS
T ss_pred CCCCCCC-ccccc
Confidence 6778887 78984
No 12
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=97.27 E-value=3.1e-05 Score=69.00 Aligned_cols=35 Identities=31% Similarity=0.511 Sum_probs=32.1
Q ss_pred CchhHHhHHHHHHHHHHHHHHHHHHhCCchhHhhhH
Q 025671 159 LPEAELLNGRAAMIGFFMAYLVDSLTGVGLVDQMSN 194 (249)
Q Consensus 159 ~~~AEl~NGRlAMIGFv~al~vEl~TG~gil~Qlg~ 194 (249)
++..|+.|||| ||||++.++.|.+||++.++++..
T Consensus 200 ~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~ 234 (251)
T 2wsc_4 200 AKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQ 234 (251)
T ss_dssp CTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTT
T ss_pred HHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHH
Confidence 37899999999 999999999999999999988754
No 13
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=30.60 E-value=64 Score=22.29 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=24.9
Q ss_pred HHHHhCCchhHhhhHHHHHHHHHHHHhhhhe
Q 025671 180 VDSLTGVGLVDQMSNFFCKTLLFVAVVGVLL 210 (249)
Q Consensus 180 vEl~TG~gil~Qlg~~~g~~Ll~vaVaG~ll 210 (249)
.-+..|++=+..++.++...|.+++|+|+++
T Consensus 10 ~aIT~G~~Dm~si~~~IVGaLvil~VAGLiy 40 (46)
T 1pfi_A 10 SAITDGQGDMKAIGGYIVGALVILAVAGLIY 40 (46)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355788888899998887888889999875
Done!