BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025673
(249 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1
Length = 149
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 94/148 (63%), Gaps = 2/148 (1%)
Query: 1 MLAVFDKSVAKAPEALQSPQT--ESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSL 58
MLAVF++S+ + P L PQ + A +A F + S +L + +A+S
Sbjct: 1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSH 60
Query: 59 NRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPY 118
+NPL PR V+DD+FC+F G ++N L++ YGL++ A E +I++EAY+ LRDR PY
Sbjct: 61 GNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPY 120
Query: 119 PADQVVRDIQGKFAFILYDSSSKNAFLA 146
P DQV+++++GKFAFIL+DS + FLA
Sbjct: 121 PPDQVIKELEGKFAFILFDSKASTLFLA 148
>sp|P22106|ASNB_ECOLI Asparagine synthetase B [glutamine-hydrolyzing] OS=Escherichia coli
(strain K12) GN=asnB PE=1 SV=3
Length = 554
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 12/126 (9%)
Query: 81 GHIENVALLKQQYGLN---KTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYD 137
G I N L+ +YG +T ++ +++ Y+ ++GP + + D+QG FAF LYD
Sbjct: 76 GEIYNHQALRAEYGDRYQFQTGSDCEVILALYQ---EKGP----EFLDDLQGMFAFALYD 128
Query: 138 SSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFFTSSGG- 196
S + D G +P + G D G L ++ +++ + C ++ FP + S G
Sbjct: 129 SEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVC-RTIKEFPAGSYLWSQDGE 187
Query: 197 LRSFEH 202
+RS+ H
Sbjct: 188 IRSYYH 193
>sp|Q10MX3|ASNS1_ORYSJ Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Oryza sativa
subsp. japonica GN=Os03g0291500 PE=2 SV=1
Length = 604
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 18/144 (12%)
Query: 75 IFCLFQGHIENVALLKQQYGLNKTAN-----EVII-VIEAYRTLRDRGPYPADQVVRDIQ 128
I + G I N +++Q+ T + EVII + E Y + V +
Sbjct: 70 IVVVANGEIYNHKKIRKQFASKHTFSTGSDCEVIIPLYEEY----------GEDFVDMLD 119
Query: 129 GKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKA 188
G FAF+LYD+ +K A DA G P + G S+G + +S +++ + + C + F FP
Sbjct: 120 GVFAFVLYDTRTKTYMAARDAIGVNPLYIGRGSDGAVWISSEMKALNEDCVE-FEIFPPG 178
Query: 189 CFFTS-SGGLRSFEHPMNELKPVP 211
++S +GGLR + P + VP
Sbjct: 179 HLYSSAAGGLRRWYKPQWFAENVP 202
>sp|Q54MB4|ASNS_DICDI Probable asparagine synthetase [glutamine-hydrolyzing]
OS=Dictyostelium discoideum GN=asns PE=1 SV=1
Length = 557
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 121 DQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGK 180
D V + G FAF++Y+ + + A D G VP + G +G + S +++ +K C K
Sbjct: 114 DDFVHMLDGDFAFVVYNKKANSFLAARDPIGVVPLYIGWHKDGSIWFSSEMKAIKDDCYK 173
Query: 181 SFAPFPKACFFTS 193
F PFP +F+S
Sbjct: 174 -FQPFPPGHYFSS 185
>sp|Q43011|ASNS2_ORYSJ Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Oryza sativa
subsp. japonica GN=Os06g0265000 PE=2 SV=3
Length = 591
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 81 GHIENVALLKQQYGLNK--TANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDS 138
G I N LK +K TA++ ++ Y ++ V + G FAF+L D+
Sbjct: 76 GEIYNHEELKANLKSHKFQTASDCEVIAHLYEEY-------GEEFVDMLDGMFAFVLLDT 128
Query: 139 SSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFFTS-SGGL 197
K+ A DA G P + G +G + S +++ + C + F FP ++S +GGL
Sbjct: 129 RDKSFIAARDAIGICPLYMGWGLDGSVWFSSEMKALSDDCER-FISFPPGHLYSSKTGGL 187
Query: 198 RSFEHP 203
R + +P
Sbjct: 188 RRWYNP 193
>sp|P49094|ASNS_MAIZE Asparagine synthetase [glutamine-hydrolyzing] OS=Zea mays GN=ASN1
PE=2 SV=2
Length = 586
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 121 DQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGK 180
++ V + G F+F+L D+ K+ A DA G P + G +G + S +++ + C +
Sbjct: 111 EEFVDMLDGMFSFVLLDTRDKSFIAARDAIGICPLYMGWGLDGSVWFSSEMKALSDDCER 170
Query: 181 SFAPFPKACFFTS-SGGLRSFEHP 203
F FP ++S +GGLR + +P
Sbjct: 171 -FITFPPGHLYSSKTGGLRRWYNP 193
>sp|Q9LFU1|ASNS3_ARATH Asparagine synthetase [glutamine-hydrolyzing] 3 OS=Arabidopsis
thaliana GN=ASN3 PE=2 SV=1
Length = 578
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 120 ADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCG 179
++ V + G FAF+L D+ K+ A DA G P + G +G + + +++ + C
Sbjct: 110 GEEFVDMLDGMFAFVLLDTRDKSFIAARDAIGITPLYIGWGLDGSVWFASEMKALSDDC- 168
Query: 180 KSFAPFPKACFFTS-SGGLRSFEHPMNELKPVPRVDSSGQVCGSTFKVDAETKKETGMP 237
+ F FP ++S GGLR + +P + VP V +TF+ + T +P
Sbjct: 169 EQFMCFPPGHIYSSKQGGLRRWYNPPWFSEVVPSTPYDPLVVRNTFEKAVIKRLMTDVP 227
>sp|Q9LV77|ASNS2_ARATH Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Arabidopsis
thaliana GN=ASN2 PE=2 SV=1
Length = 578
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 13/134 (9%)
Query: 81 GHIENVALLKQQYGLN--KTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDS 138
G I N +L+++ + +T ++ ++ Y ++ + + G FAF+L D+
Sbjct: 76 GEIYNHKILREKLKSHQFRTGSDCEVIAHLYEE-------HGEEFIDMLDGMFAFVLLDT 128
Query: 139 SSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFFTS-SGGL 197
K+ A DA G P + G +G + + +++ + C + F FP ++S GGL
Sbjct: 129 RDKSFIAARDAIGITPLYIGWGLDGSVWFASEMKALSDDC-EQFMSFPPGHIYSSKQGGL 187
Query: 198 RSFEHP--MNELKP 209
R + +P NE P
Sbjct: 188 RRWYNPPWYNEQVP 201
>sp|Q5ZJU3|ASNS_CHICK Asparagine synthetase [glutamine-hydrolyzing] OS=Gallus gallus
GN=ASNS PE=2 SV=3
Length = 561
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 75 IFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFI 134
++ + G I N L++Q+G + ++ E L +RG +Q + G FAFI
Sbjct: 70 LWLCYNGEIYNFKQLQEQFGFE---YQTLVDGEVILHLYNRGG--IEQTASMLDGVFAFI 124
Query: 135 LYDSSSKNAFLASDADGSVPFFWGTDSEGHL 165
L D++++ FLA D G P F +G L
Sbjct: 125 LLDTANRKVFLARDTYGVRPLFKVLTDDGFL 155
>sp|P17714|ASNS_MESAU Asparagine synthetase [glutamine-hydrolyzing] OS=Mesocricetus
auratus GN=ASNS PE=1 SV=3
Length = 561
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 75 IFCLFQGHIENVALLKQQYGLNKTAN---EVIIVIEAYRTLRDRGPYPADQVVRDIQGKF 131
++ + G I N L+Q++ N E+I+ L D+G +Q + + G F
Sbjct: 70 LWLCYNGEIYNHKALQQRFEFEYQTNVDGEIIL------HLYDKGG--IEQTICMLDGVF 121
Query: 132 AFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVE 172
AFIL D+++K FL D G P F +G L + + +
Sbjct: 122 AFILLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAK 162
>sp|P19891|ASNS_CRIGR Asparagine synthetase [glutamine-hydrolyzing] OS=Cricetulus griseus
GN=ASNS PE=2 SV=2
Length = 561
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 75 IFCLFQGHIENVALLKQQYGLNKTAN---EVIIVIEAYRTLRDRGPYPADQVVRDIQGKF 131
++ + G I N L+Q++ N E+I+ L D+G +Q + + G F
Sbjct: 70 LWLCYNGEIYNHKALQQRFEFEYQTNVDGEIIL------HLYDKGG--IEQTICMLDGVF 121
Query: 132 AFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVE 172
AFIL D+++K FL D G P F +G L + + +
Sbjct: 122 AFILLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAK 162
>sp|Q61024|ASNS_MOUSE Asparagine synthetase [glutamine-hydrolyzing] OS=Mus musculus
GN=Asns PE=2 SV=3
Length = 561
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 75 IFCLFQGHIENVALLKQQYGLNKTAN---EVIIVIEAYRTLRDRGPYPADQVVRDIQGKF 131
++ + G I N L+Q++ N E+I+ L D+G ++ + + G F
Sbjct: 70 LWLCYNGEIYNHKALQQRFEFEYQTNVDGEIIL------HLYDKGG--IEKTICMLDGVF 121
Query: 132 AFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVE 172
AFIL D+++K FL D G P F +G L + + +
Sbjct: 122 AFILLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAK 162
>sp|P49088|ASNS_RAT Asparagine synthetase [glutamine-hydrolyzing] OS=Rattus norvegicus
GN=Asns PE=2 SV=3
Length = 561
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 75 IFCLFQGHIENVALLKQQYGLNKTAN---EVIIVIEAYRTLRDRGPYPADQVVRDIQGKF 131
++ + G I N L+Q++ N E+I+ L D+G ++ + + G F
Sbjct: 70 LWLCYNGEIYNHKALQQRFEFEYQTNVDGEIIL------HLYDKGG--IEKTICMLDGVF 121
Query: 132 AFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVE 172
AFIL D+++K FL D G P F +G L + + +
Sbjct: 122 AFILLDTANKKVFLGRDTYGVRPLFKALTEDGFLAVCSEAK 162
>sp|Q5R6W9|ASNS_PONAB Asparagine synthetase [glutamine-hydrolyzing] OS=Pongo abelii
GN=ASNS PE=2 SV=3
Length = 561
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 75 IFCLFQGHIENVALLKQQYGL---NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKF 131
++ + G I N ++Q + K E+I+ L D+G +Q + + G F
Sbjct: 70 LWLCYNGEIYNHKKMQQHFEFEYQTKVDGEIIL------HLYDKGG--IEQTICMLDGVF 121
Query: 132 AFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVE 172
AF+L D+++K FL D G P F +G L + + +
Sbjct: 122 AFVLLDTATKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAK 162
>sp|P08243|ASNS_HUMAN Asparagine synthetase [glutamine-hydrolyzing] OS=Homo sapiens
GN=ASNS PE=1 SV=4
Length = 561
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 75 IFCLFQGHIENVALLKQQYGL---NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKF 131
++ + G I N ++Q + K E+I+ L D+G +Q + + G F
Sbjct: 70 LWLCYNGEIYNHKKMQQHFEFEYQTKVDGEIIL------HLYDKGG--IEQTICMLDGVF 121
Query: 132 AFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVE 172
AF+L D+++K FL D G P F +G L + + +
Sbjct: 122 AFVLLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAK 162
>sp|Q1LZA3|ASNS_BOVIN Asparagine synthetase [glutamine-hydrolyzing] OS=Bos taurus GN=ASNS
PE=2 SV=3
Length = 561
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 11/101 (10%)
Query: 75 IFCLFQGHIENVALLKQQYGL---NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKF 131
++ + G I N L+ + K E+I+ L D+G +Q V + G F
Sbjct: 70 LWLCYNGEIYNHKKLQHHFEFEYQTKVDGEIIL------HLYDKGG--IEQTVCMLDGVF 121
Query: 132 AFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVE 172
AFIL D+++K FL D G P F +G L + + +
Sbjct: 122 AFILLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAK 162
>sp|P31752|ASNS_ASPOF Asparagine synthetase [glutamine-hydrolyzing] OS=Asparagus
officinalis PE=2 SV=2
Length = 590
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 127 IQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFP 186
+ G F+F+L D+ + A DA G P + G +G + LS +++ + C + F FP
Sbjct: 117 LDGMFSFVLLDTRNNCFVAARDAVGITPLYIGWGLDGSVWLSSEMKGLNDDC-EHFEVFP 175
Query: 187 KACFFTS-SGGLRSFEHPMNELKPVPRVDSSGQVCGSTFKVDAETKK 232
++S SG R + +P + +P V F+ DA K+
Sbjct: 176 PGNLYSSRSGSFRRWYNPQWYNETIPSAPYDPLVLRKAFE-DAVIKR 221
>sp|Q58456|ASNH2_METJA Putative asparagine synthetase [glutamine-hydrolyzing] 2
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1056
PE=3 SV=3
Length = 515
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 74 DIFCLFQGHIENVALLKQQYGLN-KTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFA 132
DI ++ G I N LK+++ L +T + ++++ Y L V++ G +A
Sbjct: 86 DIIIVYNGEIYNYLELKEKFNLETETGTDTEVILKLYNKL-------GFDCVKEFNGMWA 138
Query: 133 FILYDSSSKNAFLASDADGSVPFFWGTD 160
F ++D F + D G PF++ D
Sbjct: 139 FCIFDKKKGLIFCSRDRLGVKPFYYYWD 166
>sp|P64247|ASNH_MYCTU Putative asparagine synthetase [glutamine-hydrolyzing]
OS=Mycobacterium tuberculosis GN=asnB PE=3 SV=1
Length = 652
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 122 QVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSD 169
+V++ ++G FAF L+D+ ++ F A D G P F T + G V S+
Sbjct: 129 EVLQRLRGMFAFALWDTVTRELFCARDPFGIKPLFIATGAGGTAVASE 176
>sp|P64248|ASNH_MYCBO Putative asparagine synthetase [glutamine-hydrolyzing]
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=asnB PE=1 SV=1
Length = 652
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 122 QVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSD 169
+V++ ++G FAF L+D+ ++ F A D G P F T + G V S+
Sbjct: 129 EVLQRLRGMFAFALWDTVTRELFCARDPFGIKPLFIATGAGGTAVASE 176
>sp|O24661|ASNS_TRIVS Asparagine synthetase [glutamine-hydrolyzing] OS=Triphysaria
versicolor GN=AS PE=2 SV=3
Length = 586
Score = 34.7 bits (78), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 120 ADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCG 179
+ V + G F+F+L DS A DA G + G +G + +S +++ + C
Sbjct: 110 GENFVEMLDGMFSFVLLDSRDNTFIAARDAFGITSLYIGWGLDGSVWISSELKGLHDEC- 168
Query: 180 KSFAPFPKACFFTS-SGGLRSFEHP 203
++F FP ++S + G R + +P
Sbjct: 169 ENFEVFPPGHVYSSKTEGFRRWYNP 193
>sp|Q12NL3|PYRC_SHEDO Dihydroorotase OS=Shewanella denitrificans (strain OS217 / ATCC
BAA-1090 / DSM 15013) GN=pyrC PE=3 SV=1
Length = 344
Score = 34.3 bits (77), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 13/150 (8%)
Query: 58 LNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGP 117
+R+ L + A V F + +E++ +NK + V I A+ L +R
Sbjct: 147 FDREKVFLETILAQVVTDFPKLKIVLEHITTSDAVEFVNKAPDNVAATITAHHLLYNRN- 205
Query: 118 YPADQVVRDIQGKFAF--ILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVK 175
+ I+ F IL ++ + A +A+ GS FF GTDS HL D +
Sbjct: 206 ---HMLAGGIRPHFYCLPILKRNTHQQALIAAATSGSKKFFLGTDSAPHL---KDKKEAS 259
Query: 176 KGCGKSFAPFPK----ACFFTSSGGLRSFE 201
GC S+ A F ++G L E
Sbjct: 260 CGCAGSYTAHAAIELYAEAFEAAGALDKLE 289
>sp|A2SLG5|RPOB_METPP DNA-directed RNA polymerase subunit beta OS=Methylibium
petroleiphilum (strain PM1) GN=rpoB PE=3 SV=1
Length = 1375
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 14/120 (11%)
Query: 62 NPLLPRL-FAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPA 120
+ LL +L A + DI CL+ ++ A + Q ++TA+E+ + YR +R P
Sbjct: 331 DSLLKKLRTAGIKDIQCLYTNELDMGAYISQTLASDETADELAARVAIYRMMRPGEPPTE 390
Query: 121 DQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPF--FWGTDS-EGHLVLSDD--VEIVK 175
D V Q F + Y S++ + S G + F G D+ EG +VL++D +++VK
Sbjct: 391 DAV----QALFNRLFY---SEDTYDLSRV-GRMKFNARVGRDTAEGRMVLANDDILDVVK 442
>sp|Q6IE36|OVOS2_HUMAN Ovostatin homolog 2 OS=Homo sapiens GN=OVOS2 PE=2 SV=2
Length = 1432
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 68 LFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDI 127
F VV DI L ++N+ +L+ YG N ++ + Y + +Q+ ++
Sbjct: 935 FFTVVGDILGL---AMQNLVVLQMPYG-GGEQNAALLASDTYVLDYLKS---TEQLTEEV 987
Query: 128 QGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLS 168
Q K AF L + + ++DGS FW + +G + LS
Sbjct: 988 QSK-AFFLLSNGYQRQLSFKNSDGSYSVFWQQNQKGSIWLS 1027
>sp|Q55946|Y787_SYNY3 Uncharacterized protein sll0787 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0787 PE=4 SV=1
Length = 322
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 17 QSPQTESACALKNGLLANHFSSVHPG-SVTVNLGSSGVIAYSLNRQNPL 64
Q +T AC GL+A +++ PG ++T+ LGS + + L +QNPL
Sbjct: 268 QFVKTVKACFQAEGLIAEAIATIQPGHNLTLKLGSESQLFWDL-QQNPL 315
>sp|P78753|ASNS_SCHPO Probable asparagine synthetase [glutamine-hydrolyzing]
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=asn1 PE=1 SV=3
Length = 557
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 13/119 (10%)
Query: 81 GHIENVALLKQQYGLN---KTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYD 137
G I N L++ N KT ++ +++ YR + GP A+ + G F+++LYD
Sbjct: 76 GEIYNHLKLRENLKGNYKFKTYSDCEVILYLYR---EHGPACANM----LDGMFSWVLYD 128
Query: 138 SSSKNAFLASDADGSVPFFWG--TDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFFTSS 194
A D G + G +DS + +++ + C K A FP ++ S
Sbjct: 129 QDKDKVVAARDPIGITTLYQGFSSDSPDTAYFASELKALHPVCDKIIA-FPPGHYYDSE 186
>sp|C1CVE0|LEUD_DEIDV 3-isopropylmalate dehydratase small subunit OS=Deinococcus deserti
(strain VCD115 / DSM 17065 / LMG 22923) GN=leuD PE=3
SV=1
Length = 181
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 127 IQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFP 186
I FA I Y +S N FLA + DG V F D + + ++ G +F P P
Sbjct: 81 IAPNFARIYYRNSINNGFLALECDGIVEAFQDGDEANLDLKGGTITNLRTGQTLTFVPVP 140
Query: 187 K-ACFFTSSGGLRSFEHPMNELKPVPRVDSS 216
+ A +GG + M P DSS
Sbjct: 141 QFALDVQKAGGWLEY---MRAQVPAEADDSS 168
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,221,897
Number of Sequences: 539616
Number of extensions: 3851860
Number of successful extensions: 9059
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 9035
Number of HSP's gapped (non-prelim): 33
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)