Query 025673
Match_columns 249
No_of_seqs 213 out of 1754
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:18:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01910 Wali7 This domain is p 100.0 2.9E-54 6.3E-59 374.5 23.5 224 2-226 1-224 (224)
2 PF12481 DUF3700: Aluminium in 100.0 1.6E-46 3.4E-51 321.7 20.0 225 2-226 1-228 (228)
3 PLN02549 asparagine synthase ( 100.0 3.5E-41 7.5E-46 329.7 19.1 198 29-241 21-230 (578)
4 PRK09431 asnB asparagine synth 100.0 3.8E-41 8.3E-46 328.4 18.1 199 28-241 20-232 (554)
5 PTZ00077 asparagine synthetase 100.0 2.1E-40 4.6E-45 324.8 18.9 199 29-241 21-242 (586)
6 COG0367 AsnB Asparagine syntha 100.0 2.6E-40 5.6E-45 321.8 15.6 199 26-241 17-235 (542)
7 TIGR03104 trio_amidotrans aspa 100.0 2.8E-38 6.1E-43 310.5 16.3 200 28-241 19-265 (589)
8 TIGR01536 asn_synth_AEB aspara 100.0 1.1E-36 2.5E-41 291.4 17.4 196 28-240 17-257 (467)
9 TIGR03108 eps_aminotran_1 exos 100.0 1.7E-36 3.7E-41 299.7 16.2 200 28-241 20-263 (628)
10 cd00712 AsnB Glutamine amidotr 100.0 1E-34 2.2E-39 252.6 18.6 163 27-202 17-220 (220)
11 KOG0571 Asparagine synthase (g 100.0 1.4E-35 3E-40 274.2 10.8 198 29-240 20-229 (543)
12 cd01909 betaLS_CarA_N Glutamin 100.0 4.9E-33 1.1E-37 239.4 16.9 123 71-203 48-199 (199)
13 cd03766 Gn_AT_II_novel Gn_AT_I 100.0 1.9E-31 4.1E-36 226.6 13.8 144 28-188 20-178 (181)
14 PRK07631 amidophosphoribosyltr 100.0 1.8E-29 4E-34 241.7 17.8 168 29-201 27-236 (475)
15 PRK08525 amidophosphoribosyltr 100.0 2.8E-29 6.1E-34 239.4 18.7 166 29-199 17-227 (445)
16 PRK06388 amidophosphoribosyltr 100.0 4.1E-29 8.8E-34 239.4 19.2 171 27-202 33-245 (474)
17 PRK08341 amidophosphoribosyltr 100.0 8.3E-29 1.8E-33 235.6 18.5 165 27-199 17-223 (442)
18 cd00714 GFAT Glutamine amidotr 100.0 1.4E-28 3E-33 213.9 16.9 155 28-191 15-213 (215)
19 PRK07272 amidophosphoribosyltr 100.0 2.8E-28 6.2E-33 234.0 20.0 168 28-200 26-237 (484)
20 PRK06781 amidophosphoribosyltr 100.0 2.3E-28 4.9E-33 234.2 19.3 168 28-200 26-235 (471)
21 PRK07847 amidophosphoribosyltr 100.0 1.9E-28 4.1E-33 236.3 18.5 211 29-243 40-316 (510)
22 PF13537 GATase_7: Glutamine a 100.0 3.8E-29 8.2E-34 200.0 9.9 120 49-176 2-125 (125)
23 PRK07349 amidophosphoribosyltr 100.0 4.3E-28 9.3E-33 233.4 18.6 168 29-200 50-264 (500)
24 PRK09123 amidophosphoribosyltr 100.0 1.2E-27 2.5E-32 229.9 19.6 169 27-201 35-248 (479)
25 cd00715 GPATase_N Glutamine am 100.0 3.1E-27 6.7E-32 209.9 20.3 170 27-200 14-226 (252)
26 PRK05793 amidophosphoribosyltr 99.9 6.6E-27 1.4E-31 224.4 19.2 168 29-201 32-241 (469)
27 PLN02440 amidophosphoribosyltr 99.9 6.4E-27 1.4E-31 225.0 18.4 166 28-197 16-223 (479)
28 PRK00331 glucosamine--fructose 99.9 7.8E-27 1.7E-31 229.9 18.7 165 28-201 16-225 (604)
29 PRK09246 amidophosphoribosyltr 99.9 6.3E-27 1.4E-31 226.2 17.0 164 29-196 17-235 (501)
30 TIGR01135 glmS glucosamine--fr 99.9 7.5E-27 1.6E-31 230.2 17.7 165 28-201 15-224 (607)
31 cd01907 GlxB Glutamine amidotr 99.9 8.3E-27 1.8E-31 207.2 15.9 125 59-192 95-248 (249)
32 TIGR01134 purF amidophosphorib 99.9 5.1E-26 1.1E-30 216.9 18.8 167 27-199 15-225 (442)
33 cd00352 Gn_AT_II Glutamine ami 99.9 3.1E-25 6.7E-30 190.3 15.4 158 30-191 21-220 (220)
34 PTZ00295 glucosamine-fructose- 99.9 8.4E-25 1.8E-29 217.0 18.6 134 59-201 113-255 (640)
35 PF13522 GATase_6: Glutamine a 99.9 3.6E-23 7.8E-28 167.4 12.0 114 45-170 15-133 (133)
36 COG0034 PurF Glutamine phospho 99.9 1.7E-22 3.7E-27 189.4 17.6 182 59-244 89-298 (470)
37 KOG0572 Glutamine phosphoribos 99.9 1.6E-22 3.5E-27 185.4 15.5 182 59-244 86-306 (474)
38 PTZ00394 glucosamine-fructose- 99.8 2.4E-20 5.2E-25 186.0 16.5 149 44-200 99-279 (670)
39 PLN02981 glucosamine:fructose- 99.8 4.9E-20 1.1E-24 184.1 17.9 150 45-201 89-277 (680)
40 COG0449 GlmS Glucosamine 6-pho 99.7 3.2E-17 7E-22 159.6 14.5 121 73-198 92-219 (597)
41 cd00713 GltS Glutamine amidotr 99.7 1.9E-15 4.2E-20 142.5 14.6 114 76-192 226-391 (413)
42 cd01908 YafJ Glutamine amidotr 99.6 1.4E-14 3.1E-19 129.1 13.2 133 47-192 85-253 (257)
43 TIGR03442 conserved hypothetic 99.6 3.7E-14 8E-19 126.4 13.7 137 46-198 86-247 (251)
44 KOG0573 Asparagine synthase [A 99.4 1.3E-12 2.9E-17 122.6 12.2 140 29-188 20-171 (520)
45 PF00310 GATase_2: Glutamine a 99.3 9.4E-12 2E-16 116.3 11.0 94 76-171 220-361 (361)
46 PRK11750 gltB glutamate syntha 99.0 2.8E-09 6E-14 112.7 13.6 115 76-192 237-401 (1485)
47 KOG1268 Glucosamine 6-phosphat 98.8 6.4E-09 1.4E-13 99.7 5.9 128 26-159 56-202 (670)
48 PF13230 GATase_4: Glutamine a 98.2 1.3E-05 2.7E-10 72.4 10.1 131 58-196 88-251 (271)
49 PF09147 DUF1933: Domain of un 98.0 9E-05 1.9E-09 62.6 10.7 111 71-191 45-184 (201)
50 COG0067 GltB Glutamate synthas 97.6 0.00024 5.3E-09 66.6 7.9 116 76-197 227-362 (371)
51 COG0121 Predicted glutamine am 88.1 2.7 5.9E-05 37.7 8.0 46 58-106 87-133 (252)
52 COG0067 GltB Glutamate synthas 70.7 8.1 0.00018 36.6 5.1 47 124-172 324-370 (371)
53 KOG0399 Glutamate synthase [Am 41.6 46 0.001 36.6 5.1 66 124-191 407-474 (2142)
54 TIGR03823 FliZ flagellar regul 41.3 19 0.00041 30.2 1.9 19 73-91 33-51 (168)
55 PRK11582 flagella biosynthesis 41.0 19 0.00042 30.1 1.9 19 73-91 33-51 (169)
56 PF04566 RNA_pol_Rpb2_4: RNA p 35.9 1E+02 0.0023 21.5 4.8 47 100-157 12-60 (63)
57 KOG0876 Manganese superoxide d 34.8 2.1E+02 0.0045 25.5 7.5 81 76-160 92-183 (234)
58 PF08973 TM1506: Domain of unk 34.2 15 0.00034 29.8 0.4 27 128-157 10-36 (134)
59 COG4911 Uncharacterized conser 27.8 1.3E+02 0.0028 23.7 4.5 41 100-143 51-97 (123)
60 PF03508 Connexin43: Gap junct 21.3 35 0.00075 18.4 0.2 8 239-246 12-19 (20)
61 PF12594 DUF3764: Protein of u 20.7 40 0.00088 25.3 0.5 19 145-163 28-46 (86)
62 COG4315 Uncharacterized protei 20.3 84 0.0018 25.3 2.2 32 124-160 86-117 (138)
No 1
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=100.00 E-value=2.9e-54 Score=374.45 Aligned_cols=224 Identities=65% Similarity=1.129 Sum_probs=205.1
Q ss_pred eeeccccccCCCcccCCCCCcccccccHHHHHHHHHhcCCCccceeccceeEEeccCCCCCCCcCcccccCCcEEEEEEE
Q 025673 2 LAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQG 81 (249)
Q Consensus 2 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~m~~~l~hRGpd~~~~~~~rl~i~~~~~~~~QP~~~~~~~~~~~~~lv~NG 81 (249)
|+||+++||++|+||++|++.+. ++...++++.+....|+..++.+|..+.++++++++.|++|+.++.++++++++||
T Consensus 1 laif~~~~~~~p~el~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~rl~~~~~~~~~vfnG 79 (224)
T cd01910 1 LAVFSKAVAKPPEELVSAGSRTP-AKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHNQSPLHPRLFAVKDDIFCLFQG 79 (224)
T ss_pred CcccccccCCCChHHcCCCcccc-CCCHHHHHHHHHhcCCCcEEEEcCCceEEEEecCCCCcccCcEECCCCCEEEEEEe
Confidence 79999999999999999986333 44467899999999999999999988899998666558988889888999999999
Q ss_pred EEcchHHHHHHhcCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEec
Q 025673 82 HIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDS 161 (249)
Q Consensus 82 eI~N~~eL~~~L~~~~~~sD~Evil~ly~~~~~~G~~~~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~ 161 (249)
||||+.+|+++|+..++.+|+|+|+++|++++++|+++..+++++|+|+|||+|||++++++++|||++|++||||+...
T Consensus 80 eIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~~~ 159 (224)
T cd01910 80 HLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIAA 159 (224)
T ss_pred EEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEEeC
Confidence 99999999999977788999999999999977778777768999999999999999999999999999999999999876
Q ss_pred CCeEEEEecchhhhhccCCceEEecCCeEEEeCCeeEEeecCCCCCCCCCCCCChhhhhcceece
Q 025673 162 EGHLVLSDDVEIVKKGCGKSFAPFPKACFFTSSGGLRSFEHPMNELKPVPRVDSSGQVCGSTFKV 226 (249)
Q Consensus 162 dg~~~fASe~~aL~~~~~~~i~~lpPG~~~~~~~gi~~y~~p~~~~~~~~~~d~~~~~~~~~f~~ 226 (249)
+|.++||||+++|...|.+.+..||||||+.+.+|+++|++|..+++++||+|++|++||++|||
T Consensus 160 dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s~ggl~~~~~p~~~~~~vp~~~s~g~~cg~~f~v 224 (224)
T cd01910 160 DGSVVFSDDVELVKASCGKSFAPFPKGCFFHSEGGLRSFEHPMNKLKAVPRVDSEGEMCGATFKV 224 (224)
T ss_pred CCEEEEEeCHHHhhhhhccEEEEECCCCEEeCCCCEEEeeCCCchhhcCCcccCcccEecceeeC
Confidence 78999999999999999778999999999987777999999999999999999999999999975
No 2
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=100.00 E-value=1.6e-46 Score=321.69 Aligned_cols=225 Identities=60% Similarity=1.071 Sum_probs=212.4
Q ss_pred eeeccccccCCCcccCCCCC-ccc--ccccHHHHHHHHHhcCCCccceeccceeEEeccCCCCCCCcCcccccCCcEEEE
Q 025673 2 LAVFDKSVAKAPEALQSPQT-ESA--CALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCL 78 (249)
Q Consensus 2 ~~~~~~~~~~~p~~~~~~~~-~~~--~~~~~~~m~~~l~hRGpd~~~~~~~rl~i~~~~~~~~QP~~~~~~~~~~~~~lv 78 (249)
||||+++||++|+||++|+| .++ .++-..++++.+....|+.+++.+|..+.++|+++.+.|++|+.|..-++|.|+
T Consensus 1 LavF~k~va~~PeeL~sp~s~~~s~~~~k~~~ell~~F~s~~p~a~s~~~g~~~~lAys~~~~~~l~pR~F~~~DdIfCi 80 (228)
T PF12481_consen 1 LAVFHKSVAKPPEELNSPASSLPSSKKPKGPEELLKDFVSANPNAFSMNFGDSAALAYSHSNQSSLHPRLFAGVDDIFCI 80 (228)
T ss_pred CcccccccCCCchHhcCcccCCCcccCCCCHHHHHHHHHHhCCCeEEEEcCCCEEEEEecCCCCccccccccccCCEEEE
Confidence 79999999999999999986 333 255588999999999999999999999999999776668888899888899999
Q ss_pred EEEEEcchHHHHHHhcCCCCCCHHHHHHHHHHHHHhCCCChHHHHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEE
Q 025673 79 FQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWG 158 (249)
Q Consensus 79 ~NGeI~N~~eL~~~L~~~~~~sD~Evil~ly~~~~~~G~~~~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~ 158 (249)
|-|.|.|...|+++|+..++.++.-+|+++|+.++|+|+++..+++++|+|.|||+|||..++++++|||+.|.-|||||
T Consensus 81 F~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLyWG 160 (228)
T PF12481_consen 81 FLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSDGSVPLYWG 160 (228)
T ss_pred EecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCCCCcceEEE
Confidence 99999999999999999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCeEEEEecchhhhhccCCceEEecCCeEEEeCCeeEEeecCCCCCCCCCCCCChhhhhcceece
Q 025673 159 TDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFFTSSGGLRSFEHPMNELKPVPRVDSSGQVCGSTFKV 226 (249)
Q Consensus 159 ~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~~~~~gi~~y~~p~~~~~~~~~~d~~~~~~~~~f~~ 226 (249)
.+.||.++||++...|...|++....||+|+++.+++|+++|.+|..+++++||+|++|++||++|||
T Consensus 161 i~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~f~S~~Gl~sfehP~nk~k~~prvDseG~~cGa~FkV 228 (228)
T PF12481_consen 161 IAADGSLVFSDDLELIKEGCGKSFAPFPAGCFFSSEGGLRSFEHPKNKVKAMPRVDSEGQMCGATFKV 228 (228)
T ss_pred EeCCCCEEEcCCHHHHHhhhhhccCCCCcceEEEecCceEeecCCcccccccccccCcccCcceeeeC
Confidence 99889999999999999999999999999999999999999999999999999999999999999975
No 3
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=3.5e-41 Score=329.73 Aligned_cols=198 Identities=21% Similarity=0.387 Sum_probs=167.7
Q ss_pred HHHHHHHHHhcCCCccc--------eeccceeEEeccCCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC--CCC
Q 025673 29 NGLLANHFSSVHPGSVT--------VNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL--NKT 98 (249)
Q Consensus 29 ~~~m~~~l~hRGpd~~~--------~~~~rl~i~~~~~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~--~~~ 98 (249)
+.+|+++++|||||+.. +++.||+|+|.. .+.||+ ++.++++++++||||||+.+||++|.. |.+
T Consensus 21 ~~~m~~~l~hRGPD~~g~~~~~~~~Lgh~RLsI~d~~-~g~QP~----~~~~~~~~lv~NGEIyN~~eLr~~L~~~~f~t 95 (578)
T PLN02549 21 VLELSRRLRHRGPDWSGLYGNEDCYLAHERLAIMDPE-SGDQPL----YNEDKTIVVTANGEIYNHKELREKLKLHKFRT 95 (578)
T ss_pred HHHHHHHhcCcCCCccCEEEeCCeEEEEeeeeEeCCC-CCCCCc----CcCCCCEEEEEEEEEEcHHHHHHHHHhCCCCC
Confidence 67899999999999843 445589999984 789999 467788999999999999999999963 899
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecchhhhhcc
Q 025673 99 ANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGC 178 (249)
Q Consensus 99 ~sD~Evil~ly~~~~~~G~~~~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~ 178 (249)
.||+|+|+++|++ +|. +++++|+|+|||+|||..++++++||||+|+|||||+...++.++||||+++|...+
T Consensus 96 ~sD~Evil~ly~~---~G~----~~~~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyyg~~~~g~~~fASE~KaL~~~~ 168 (578)
T PLN02549 96 GSDCEVIAHLYEE---HGE----EFVDMLDGMFSFVLLDTRDNSFIAARDHIGITPLYIGWGLDGSVWFASEMKALCDDC 168 (578)
T ss_pred CCHHHHHHHHHHH---HHH----HHHHhCCCceEEEEEECCCCEEEEEECCCCCCCeEEEEecCCeEEEEecHHHHHHHh
Confidence 9999999999998 563 899999999999999998999999999999999999987567899999999999876
Q ss_pred CCceEEecCCeEEEe-CCeeEEeecCCCCCCCCCCCCChhhhhcceeceeeccccc-CCCCCCCc
Q 025673 179 GKSFAPFPKACFFTS-SGGLRSFEHPMNELKPVPRVDSSGQVCGSTFKVDAETKKE-TGMPRVGS 241 (249)
Q Consensus 179 ~~~i~~lpPG~~~~~-~~gi~~y~~p~~~~~~~~~~d~~~~~~~~~f~~~~~~~~~-~~~p~~~~ 241 (249)
++|++|||||++.. .+++++||+|.......+..+...+.++..| .+||.+|. +++| ||.
T Consensus 169 -~~I~~lpPGh~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~~lr~~L-~~aV~~rl~sdvp-vgv 230 (578)
T PLN02549 169 -ERFEEFPPGHYYSSKAGGFRRWYNPPWFSESIPSTPYDPLVLREAF-EKAVIKRLMTDVP-FGV 230 (578)
T ss_pred -CCEEEeCCCeEEEEcCCCEEEEEecccCccccCCchhHHHHHHHHH-HHHHHHHhccCCc-eeE
Confidence 46999999999954 4458999997643333333333446788889 89999997 8999 764
No 4
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=3.8e-41 Score=328.39 Aligned_cols=199 Identities=21% Similarity=0.377 Sum_probs=166.8
Q ss_pred cHHHHHHHHHhcCCCccc--------eeccceeEEeccCCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC---C
Q 025673 28 KNGLLANHFSSVHPGSVT--------VNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL---N 96 (249)
Q Consensus 28 ~~~~m~~~l~hRGpd~~~--------~~~~rl~i~~~~~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~---~ 96 (249)
.+.+|+++|+|||||+.. +++.||+|+|+. .+.||+ ++.+++++++|||||||+.+|+++|.. |
T Consensus 20 ~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~RLsIid~~-~g~QP~----~~~~~~~~lv~NGEIyN~~eLr~~L~~~~~f 94 (554)
T PRK09431 20 KALEMSRLMRHRGPDWSGIYASDNAILGHERLSIVDVN-GGAQPL----YNEDGTHVLAVNGEIYNHQELRAELGDKYAF 94 (554)
T ss_pred HHHHHHHHhhCCCCCcCCEEEeCCeEEEEEEeeecCCC-CCCCCC----CcCCCCEEEEEEEEEecHHHHHHHHhccCCc
Confidence 377899999999999943 445599999995 789999 467889999999999999999999863 8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecchhhhh
Q 025673 97 KTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKK 176 (249)
Q Consensus 97 ~~~sD~Evil~ly~~~~~~G~~~~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~ 176 (249)
.+.||+|+|+++|++ +|. +++++|+|+|||+|||.+++++++||||+|+|||||+...++.++||||+++|..
T Consensus 95 ~t~sD~Evil~ly~~---~G~----~~~~~L~G~FAf~i~D~~~~~l~laRD~~GikPLyy~~~~~~~~~faSE~kaL~~ 167 (554)
T PRK09431 95 QTGSDCEVILALYQE---KGP----DFLDDLDGMFAFALYDSEKDAYLIARDPIGIIPLYYGYDEHGNLYFASEMKALVP 167 (554)
T ss_pred CCCCHHHHHHHHHHH---HHH----HHHHhCCCceEEEEEECCCCEEEEEeCCCCCcceEEEEeCCCeEEEecchHHHHH
Confidence 899999999999998 553 8999999999999999999999999999999999999885478999999999998
Q ss_pred ccCCceEEecCCeEEEeCCe-eEEeecCCCC-CCCCCCCCChhhhhcceeceeeccccc-CCCCCCCc
Q 025673 177 GCGKSFAPFPKACFFTSSGG-LRSFEHPMNE-LKPVPRVDSSGQVCGSTFKVDAETKKE-TGMPRVGS 241 (249)
Q Consensus 177 ~~~~~i~~lpPG~~~~~~~g-i~~y~~p~~~-~~~~~~~d~~~~~~~~~f~~~~~~~~~-~~~p~~~~ 241 (249)
.+ ++|++|||||++...+| +.+||++... ....+..+..-+.++..| .+||.+|. +++| ||.
T Consensus 168 ~~-~~I~~lpPGh~l~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~lr~~L-~~aV~~rl~sdvp-vGv 232 (554)
T PRK09431 168 VC-KTIKEFPPGHYYWSKDGEFVRYYQRDWFDYDAVKDNVTDKNELRDAL-EAAVKKRLMSDVP-YGV 232 (554)
T ss_pred hc-CCEEEECCCeEEEECCCcEEEecCCCcccccccCCHHHHHHHHHHHH-HHHHHHHhcCCCc-eEE
Confidence 76 47999999999965444 8899996531 111221222335688888 99999997 9999 774
No 5
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=2.1e-40 Score=324.77 Aligned_cols=199 Identities=17% Similarity=0.316 Sum_probs=164.4
Q ss_pred HHHHHHHHHhcCCCccce-------------eccceeEEeccCCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC
Q 025673 29 NGLLANHFSSVHPGSVTV-------------NLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL 95 (249)
Q Consensus 29 ~~~m~~~l~hRGpd~~~~-------------~~~rl~i~~~~~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~ 95 (249)
..+|+++++|||||+..+ ++.||+|+|++ .+.||| ++.+++++++|||||||+.+|+++|..
T Consensus 21 ~~~m~~~l~HRGPD~~g~~~~~~~~~~~~~lgh~RLsIvd~~-~g~QP~----~~~d~~~~lv~NGEIYN~~eLr~~L~~ 95 (586)
T PTZ00077 21 ALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVDLS-DGKQPL----LDDDETVALMQNGEIYNHWEIRPELEK 95 (586)
T ss_pred HHHHHHHHhCCCCCcCCEEEeccCCCCcEEEEeccceecCCC-CCCCCc----CCCCCCEEEEEEEEEcCHHHHHHHHHh
Confidence 668999999999998443 22389999996 589999 467889999999999999999999853
Q ss_pred ----CCCCCHHHHHHHHHHHHHhCCCChHHHHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecc
Q 025673 96 ----NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDV 171 (249)
Q Consensus 96 ----~~~~sD~Evil~ly~~~~~~G~~~~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~ 171 (249)
|.+.||+|+|+++|++ +|. .+++++|+|+|||+|||..++++++||||+|+|||||+...++.++||||+
T Consensus 96 ~g~~f~t~sD~Evil~ly~~---~G~---~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyy~~~~~g~~~faSE~ 169 (586)
T PTZ00077 96 EGYKFSSNSDCEIIGHLYKE---YGP---KDFWNHLDGMFATVIYDMKTNTFFAARDHIGIIPLYIGYAKDGSIWFSSEL 169 (586)
T ss_pred cCCcCCCCCHHHHHHHHHHH---hCH---HHHHHhcCCCEEEEEEECCCCEEEEEECCCCCcCeEEEEecCCeEEEEecH
Confidence 8999999999999998 662 379999999999999999999999999999999999997546789999999
Q ss_pred hhhhhccCCceEEecCCeEEEeC-C--eeEEeecCCCCCCC--CCCCCChhhhhcceeceeeccccc-CCCCCCCc
Q 025673 172 EIVKKGCGKSFAPFPKACFFTSS-G--GLRSFEHPMNELKP--VPRVDSSGQVCGSTFKVDAETKKE-TGMPRVGS 241 (249)
Q Consensus 172 ~aL~~~~~~~i~~lpPG~~~~~~-~--gi~~y~~p~~~~~~--~~~~d~~~~~~~~~f~~~~~~~~~-~~~p~~~~ 241 (249)
|+|...+ ++|++|||||++... + .+++||+|...... .+..+..-+.++..| .+||.+|. +++| ||.
T Consensus 170 kaL~~~~-~~I~~lpPGh~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lr~~L-~~AV~~rl~sdvp-vGv 242 (586)
T PTZ00077 170 KALHDQC-VEVKQFPPGHYYDQTKEKGEFVRYYNPNWHDFDHPIPTGEIDLEEIREAL-EAAVRKRLMGDVP-FGL 242 (586)
T ss_pred HHHHHhc-CCEEEeCCCcEEEecCCcceeEEecCCcccccccCCCCHHHHHHHHHHHH-HHHHHHHhcCCCc-eEE
Confidence 9998876 469999999999543 2 37899997643211 222222235688888 99999997 8999 774
No 6
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-40 Score=321.76 Aligned_cols=199 Identities=18% Similarity=0.352 Sum_probs=170.7
Q ss_pred cccHHHHHHHHHhcCCCccc--------eeccceeEEeccCCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC--
Q 025673 26 ALKNGLLANHFSSVHPGSVT--------VNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL-- 95 (249)
Q Consensus 26 ~~~~~~m~~~l~hRGpd~~~--------~~~~rl~i~~~~~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~-- 95 (249)
.....+|++.++|||||+.. +++-||+|+|++. +.||+. +.+++++++|||||||+.+||++|..
T Consensus 17 ~~~~~~m~~~l~hRGPD~~g~~~~~~~~~gh~rL~i~d~~~-g~QP~~----~~~~~~~l~~NGEIYN~~elr~~l~~~g 91 (542)
T COG0367 17 KSIIEEMTKLLRHRGPDDSGVWISLNALLGHRRLSIVDLSG-GRQPMI----KEGGKYAIVYNGEIYNVEELRKELREAG 91 (542)
T ss_pred hHHHHHHHHHhhccCCCccccEecCCceeeeeEEEEecccc-CCCCcc----cCCCcEEEEECCEeeeHHHHHHHHHhcC
Confidence 34478999999999999843 3444899999984 899993 45677999999999999999999983
Q ss_pred --CCCCCHHHHHHHHHHHHHhCCCChHHHHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecchh
Q 025673 96 --NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEI 173 (249)
Q Consensus 96 --~~~~sD~Evil~ly~~~~~~G~~~~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~a 173 (249)
|.+.+|+|+|+++|++ ||. +|+++|+|+|||++||..+++|+++|||+|+|||||+..+ +.++||||.|+
T Consensus 92 ~~f~t~sDtEvil~~y~~---~g~----~~~~~l~G~fAfai~d~~~~~l~laRD~~GikPLyy~~~~-~~l~faSE~Ka 163 (542)
T COG0367 92 YEFRTYSDTEVILTLYEE---WGE----DCVEHLNGMFAFAIYDETRQKLFLARDPFGVKPLYYTSKN-ENLAFASEIKA 163 (542)
T ss_pred ceeccccchHHHHHHHHH---HHH----HHHHHhccceEEEEEECCCCEEEEEecCCCccccEEEecC-CceEEEechhh
Confidence 8999999999999999 553 8999999999999999999999999999999999999984 56999999999
Q ss_pred hhhc-----cCCceEEecCCeEEE-eCCe-eEEeecCCCCCCCCCCCCChhhhhcceeceeeccccc-CCCCCCCc
Q 025673 174 VKKG-----CGKSFAPFPKACFFT-SSGG-LRSFEHPMNELKPVPRVDSSGQVCGSTFKVDAETKKE-TGMPRVGS 241 (249)
Q Consensus 174 L~~~-----~~~~i~~lpPG~~~~-~~~g-i~~y~~p~~~~~~~~~~d~~~~~~~~~f~~~~~~~~~-~~~p~~~~ 241 (249)
|... + ++|++|||||++. +.++ +++||++...... ...++.-+.++..+ .+||.++. +++| ||+
T Consensus 164 l~~~~~~~~~-~~i~~l~pg~~l~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~l~~~l-~~sV~~r~~advp-vg~ 235 (542)
T COG0367 164 LLAHPVVRFL-RDIKELPPGHLLEFTDGGLIRRYWRLSEKTSK-ESADELAEHLRSLL-EDAVKRRLVADVP-VGV 235 (542)
T ss_pred hhhCCccccc-CCeEEcCCCcEEEEcCCCceeeeecccccccc-cchHHHHHHHHHHH-HHHHHHHhccCCc-EEE
Confidence 9876 4 4799999999994 4566 9999998776555 34455557788888 89999998 8999 775
No 7
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=2.8e-38 Score=310.46 Aligned_cols=200 Identities=19% Similarity=0.280 Sum_probs=161.3
Q ss_pred cHHHHHHHHHhcCCCccc--------eeccceeEEeccCCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC----
Q 025673 28 KNGLLANHFSSVHPGSVT--------VNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL---- 95 (249)
Q Consensus 28 ~~~~m~~~l~hRGpd~~~--------~~~~rl~i~~~~~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~---- 95 (249)
.+.+|+++|+|||||+.. +++.|++|++.+..+.||+ ++.+++++++|||||||+.+|+++|..
T Consensus 19 ~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~rl~i~~~~~~~~QP~----~~~~~~~~~v~nGeiyN~~eL~~~l~~~g~~ 94 (589)
T TIGR03104 19 AVVRMLAVLAPRGPDAGGVHAQGPVALGHRRLKIIDLSEASQQPM----VDAELGLALVFNGCIYNYRELRAELEALGYR 94 (589)
T ss_pred HHHHHHHhhcCCCCCcCCcEecCCEEEEEEeeEecCCCcCCCCCe----ECCCCCEEEEECCEecCHHHHHHHHHhcCCc
Confidence 378999999999999843 3444899999876789999 467788999999999999999999853
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecchhhh
Q 025673 96 NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVK 175 (249)
Q Consensus 96 ~~~~sD~Evil~ly~~~~~~G~~~~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~ 175 (249)
|.+.||+|+|+++|++ ||. +++++|+|+|||+|||..+++++++|||+|+|||||+.. ++.++||||+++|+
T Consensus 95 f~~~sD~Evil~~y~~---~G~----~~~~~l~G~fa~~i~d~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaLl 166 (589)
T TIGR03104 95 FFSDGDTEVILKAYHA---WGR----DCVSRFNGMFAFAIWERDSGRLLLARDRLGIKPLYYAED-AGRLRFASSLPALL 166 (589)
T ss_pred ccCCCHHHHHHHHHHH---HHH----HHHHHhhcceEEEEEeCCCCEEEEEecCCCCCCeEEEEe-CCEEEEEeCHHHHH
Confidence 7899999999999998 553 899999999999999999999999999999999999987 56899999999986
Q ss_pred hcc---------------------------CCceEEecCCeEE-EeCCe---eEEeecCCCCCCC--CCCCC-Chhhhhc
Q 025673 176 KGC---------------------------GKSFAPFPKACFF-TSSGG---LRSFEHPMNELKP--VPRVD-SSGQVCG 221 (249)
Q Consensus 176 ~~~---------------------------~~~i~~lpPG~~~-~~~~g---i~~y~~p~~~~~~--~~~~d-~~~~~~~ 221 (249)
... .++|++|||||++ ++.++ .++||+|.....+ ....+ ...+.++
T Consensus 167 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~T~~~gI~~l~pG~~l~i~~~~~~~~~~yw~~~~~~~~~~~~~~~~~~~~~l~ 246 (589)
T TIGR03104 167 AAGGVDTDIDPVALHHYLTFHAVVPAPHTILKGVRKLPPATWMTVEPDGSRTQRSYWSLDAGRPADDAARTEADWQDAIL 246 (589)
T ss_pred hCCCCCCCcCHHHHHHHHHhcCCCCCCCchhhCceeeCCCcEEEEECCCCeEEEeeccCCCCcccccCCCCHHHHHHHHH
Confidence 311 1579999999998 44333 5799997542111 11111 1224577
Q ss_pred ceeceeeccccc-CCCCCCCc
Q 025673 222 STFKVDAETKKE-TGMPRVGS 241 (249)
Q Consensus 222 ~~f~~~~~~~~~-~~~p~~~~ 241 (249)
..| .+||..+. +++| ||.
T Consensus 247 ~~L-~~AV~~rl~sd~p-vg~ 265 (589)
T TIGR03104 247 EAL-RLAVKRRLVADVP-VGV 265 (589)
T ss_pred HHH-HHHHHHHhhcCCc-eeE
Confidence 788 88999987 8999 775
No 8
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=100.00 E-value=1.1e-36 Score=291.36 Aligned_cols=196 Identities=19% Similarity=0.297 Sum_probs=156.1
Q ss_pred cHHHHHHHHHhcCCCcccee---------ccceeEEeccCCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC---
Q 025673 28 KNGLLANHFSSVHPGSVTVN---------LGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL--- 95 (249)
Q Consensus 28 ~~~~m~~~l~hRGpd~~~~~---------~~rl~i~~~~~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~--- 95 (249)
.+.+|+++|+|||||+..++ +.||+|++.+ .+.||+ .+.+++++++|||||||+.+|+++|..
T Consensus 17 ~~~~m~~~l~hRGPD~~g~~~~~~~~~lgh~rl~i~d~~-~~~qP~----~~~~~~~~lv~nGeiyN~~eL~~~l~~~g~ 91 (467)
T TIGR01536 17 AILRMSDTIAHRGPDASGIEYKDGNAILGHRRLAIIDLS-GGAQPM----SNEGKTYVIVFNGEIYNHEELREELEAKGY 91 (467)
T ss_pred HHHHHHHHhhCcCCCcCCcEEccCCEEEEEEEeEEeCCC-CCCCee----ECCCCCEEEEEeeEEcCHHHHHHHHHhcCC
Confidence 37889999999999985433 3389999986 568999 457778999999999999999999863
Q ss_pred -CCCCCHHHHHHHHHHHHHhCCCChHHHHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecchhh
Q 025673 96 -NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIV 174 (249)
Q Consensus 96 -~~~~sD~Evil~ly~~~~~~G~~~~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL 174 (249)
|.+.||+|+|+++|++ || .+++++|+|+|||++||..+++++++||++|+|||||+.. ++.++||||+++|
T Consensus 92 ~~~~~~D~e~il~~y~~---~g----~~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaL 163 (467)
T TIGR01536 92 TFQTDSDTEVILHLYEE---WG----EECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYD-GGQLYFASEIKAL 163 (467)
T ss_pred ccCCCCHHHHHHHHHHH---HH----HHHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEE-CCEEEEEecHHHH
Confidence 7899999999999998 55 3899999999999999999999999999999999999988 5789999999998
Q ss_pred hhcc---------------------------CCceEEecCCeEEE-eCCe---eEEeecCCCCCCCCCCCCChhhhhcce
Q 025673 175 KKGC---------------------------GKSFAPFPKACFFT-SSGG---LRSFEHPMNELKPVPRVDSSGQVCGST 223 (249)
Q Consensus 175 ~~~~---------------------------~~~i~~lpPG~~~~-~~~g---i~~y~~p~~~~~~~~~~d~~~~~~~~~ 223 (249)
...+ .++|++|||||++. +.++ .++||.+. .. .....++..+.++..
T Consensus 164 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~I~~l~pG~~l~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~e~l~~~ 241 (467)
T TIGR01536 164 LAHPRNIKPFPDGAALAPGFGFVRVPPPSTFFRGVFELEPGHDLPLEDDGLNIERYYWERR-DE-HTDSEEDLVDELRSL 241 (467)
T ss_pred HhccccCcCCCCHHHHHHHhccCccCCCCcccCCcEEcCCCeEEEEeCCCceEEEEecCCC-CC-CCCCHHHHHHHHHHH
Confidence 6432 15799999999984 4333 34566522 11 101111223567788
Q ss_pred eceeeccccc-CCCCCCC
Q 025673 224 FKVDAETKKE-TGMPRVG 240 (249)
Q Consensus 224 f~~~~~~~~~-~~~p~~~ 240 (249)
| .+|+.+|. +++| ||
T Consensus 242 l-~~aV~~r~~~~~~-vg 257 (467)
T TIGR01536 242 L-EDAVKRRLVADVP-VG 257 (467)
T ss_pred H-HHHHHHHhccCCc-eE
Confidence 8 78888887 7888 66
No 9
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=100.00 E-value=1.7e-36 Score=299.69 Aligned_cols=200 Identities=18% Similarity=0.269 Sum_probs=160.3
Q ss_pred cHHHHHHHHHhcCCCccc--------eeccceeEEeccCCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC----
Q 025673 28 KNGLLANHFSSVHPGSVT--------VNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL---- 95 (249)
Q Consensus 28 ~~~~m~~~l~hRGpd~~~--------~~~~rl~i~~~~~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~---- 95 (249)
.+.+|+++|.|||||+.. +++.|++|+|.. .+.||+ ++.+++++++|||+|||+.||+++|..
T Consensus 20 ~~~~m~~~l~hRGpD~~g~~~~~~~~lgh~rl~i~d~~-~~~qP~----~~~~~~~~lv~nGei~N~~eL~~~l~~~g~~ 94 (628)
T TIGR03108 20 LLRRMNDAQAHRGPDGGGVHVEPGIGLGHRRLSIIDLS-GGQQPL----FNEDGSVVVVFNGEIYNFQELVAELQALGHV 94 (628)
T ss_pred HHHHHHHHhcCCCCCccCeEeeCCEEEEEEeeeecCCC-CCCCCc----CcCCCCEEEEECCeECCHHHHHHHHHhcCCc
Confidence 378899999999999853 334489999985 689999 467889999999999999999999853
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecchhhh
Q 025673 96 NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVK 175 (249)
Q Consensus 96 ~~~~sD~Evil~ly~~~~~~G~~~~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~ 175 (249)
|.+.||+|+|+++|++ ||. +++++|+|+|||++||...++++++||++|+|||||+...++.++||||+++|.
T Consensus 95 ~~~~sD~Evi~~~~~~---~g~----~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLyy~~~~~~~~~faSe~~al~ 167 (628)
T TIGR03108 95 FRTRSDTEVIVHAWEE---WGE----ACVERFRGMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFGSELKALT 167 (628)
T ss_pred cCCCChHHHHHHHHHH---HHH----HHHHHcCCCEEEEEEECCCCEEEEEECCCCCcceEEEEeCCCEEEEEecHHHHH
Confidence 7899999999999998 552 899999999999999999999999999999999999975456799999999985
Q ss_pred hc--------------------------cCCceEEecCCeEE-EeCCe----eEEeecCCCCCCCCCCCCChhhhhccee
Q 025673 176 KG--------------------------CGKSFAPFPKACFF-TSSGG----LRSFEHPMNELKPVPRVDSSGQVCGSTF 224 (249)
Q Consensus 176 ~~--------------------------~~~~i~~lpPG~~~-~~~~g----i~~y~~p~~~~~~~~~~d~~~~~~~~~f 224 (249)
.. +.++|++|||||++ ++.++ +++||++..........+...+.++..|
T Consensus 168 ~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~gI~~l~pG~~l~~~~~~~~~~~~~yw~~~~~~~~~~~~~e~~e~l~~~l 247 (628)
T TIGR03108 168 AHPSLPRELDPLAVEDYFAYGYVPDPRTIFKGVKKLEPGHTLTLRRGAPPARPRCYWDVSFAPAAPLSEADALAELIERL 247 (628)
T ss_pred hCCCCCCCCCHHHHHHHHhcCCCCCCCchhcCcEEECCCeEEEEECCCcceeccccccCCCCCCCCCCHHHHHHHHHHHH
Confidence 31 11579999999998 44332 4689997543111001112224688888
Q ss_pred ceeeccccc-CCCCCCCc
Q 025673 225 KVDAETKKE-TGMPRVGS 241 (249)
Q Consensus 225 ~~~~~~~~~-~~~p~~~~ 241 (249)
.+|+..|. +++| ||.
T Consensus 248 -~~aV~~rl~~d~~-vg~ 263 (628)
T TIGR03108 248 -REAVRSRMVADVP-LGA 263 (628)
T ss_pred -HHHHHHHHhcCCc-ceE
Confidence 88998887 8898 774
No 10
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=100.00 E-value=1e-34 Score=252.58 Aligned_cols=163 Identities=21% Similarity=0.429 Sum_probs=138.5
Q ss_pred ccHHHHHHHHHhcCCCccc--------eeccceeEEeccCCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC---
Q 025673 27 LKNGLLANHFSSVHPGSVT--------VNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL--- 95 (249)
Q Consensus 27 ~~~~~m~~~l~hRGpd~~~--------~~~~rl~i~~~~~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~--- 95 (249)
.....|+.+|+|||||+.. +++.|+++.+.. .+.||+ ...++++++++||+|||+.+|+++|..
T Consensus 17 ~~~~~~~~~l~hRGpd~~~~~~~~~~~lgh~rl~~~~~~-~~~qP~----~~~~~~~~~~~nG~i~N~~~L~~~l~~~~~ 91 (220)
T cd00712 17 ATLERMLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLS-GGAQPM----VSEDGRLVLVFNGEIYNYRELRAELEALGH 91 (220)
T ss_pred HHHHHHHHHHhccCCCCCCEEEECCEEEEEEeeeecCcc-cCCCCe----EeCCCCEEEEEEEEEeCHHHHHHHHHhcCC
Confidence 4478999999999999843 333478887776 688998 345678999999999999999999864
Q ss_pred -CCCCCHHHHHHHHHHHHHhCCCChHHHHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecchhh
Q 025673 96 -NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIV 174 (249)
Q Consensus 96 -~~~~sD~Evil~ly~~~~~~G~~~~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL 174 (249)
+.+.+|+|+|+++|.+ +| .+++++|+|+|||++||.++++++++||++|.|||||+.. ++.++||||+++|
T Consensus 92 ~~~~~sD~e~l~~~~~~---~g----~~~~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~~-~~~~~~aSe~~~l 163 (220)
T cd00712 92 RFRTHSDTEVILHLYEE---WG----EDCLERLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGRD-GGGLAFASELKAL 163 (220)
T ss_pred cCCCCChHHHHHHHHHH---Hh----HHHHHHhhheEEEEEEECCCCEEEEEECCCCCEeeEEEEE-CCEEEEEcchHHH
Confidence 6899999999999998 55 3899999999999999998999999999999999999998 4689999999998
Q ss_pred hhccC--------------------------CceEEecCCeEE-EeCCe--eEEeec
Q 025673 175 KKGCG--------------------------KSFAPFPKACFF-TSSGG--LRSFEH 202 (249)
Q Consensus 175 ~~~~~--------------------------~~i~~lpPG~~~-~~~~g--i~~y~~ 202 (249)
...+. ++|++|||||++ ++.++ +++||+
T Consensus 164 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~V~~l~pG~~l~~~~~~~~~~~yw~ 220 (220)
T cd00712 164 LALPGVPRELDEAALAEYLAFQYVPAPRTIFKGIRKLPPGHYLTVDPGGVEIRRYWD 220 (220)
T ss_pred HhcCCCCCCcCHHHHHHHHhcCCCCCCCchhcCceEECCceEEEEECCCeEEeeeCC
Confidence 64221 579999999999 45444 678995
No 11
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-35 Score=274.22 Aligned_cols=198 Identities=21% Similarity=0.377 Sum_probs=169.3
Q ss_pred HHHHHHHHHhcCCCcc--------ceeccceeEEeccCCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC--CCC
Q 025673 29 NGLLANHFSSVHPGSV--------TVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL--NKT 98 (249)
Q Consensus 29 ~~~m~~~l~hRGpd~~--------~~~~~rl~i~~~~~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~--~~~ 98 (249)
..++..+++|||||-. -+++.||+|++.. .+.||+ ++.++.+++.+||||||+.+||+.+.. +++
T Consensus 20 ~l~ls~~~~hRgpd~sg~~~~~~~~l~heRLAIvdp~-sg~QPi----~~~~~~~~~~vNGEIYNH~~Lr~~~~~~~~~T 94 (543)
T KOG0571|consen 20 ALELSRRIRHRGPDWSGLAQRNDNILGHERLAIVDPT-SGAQPI----VGEDGTYVVTVNGEIYNHKKLREHCKDFEFQT 94 (543)
T ss_pred hhhHHHhhcCCCCCcchhheeccccccccceeEecCC-cCCccc----ccCCCcEEEEECceeccHHHHHHHhhhccccc
Confidence 6678899999999973 2567799999996 689999 467888888899999999999999984 899
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecchhhhhcc
Q 025673 99 ANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGC 178 (249)
Q Consensus 99 ~sD~Evil~ly~~~~~~G~~~~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~ 178 (249)
.||+|+|+++|.+ +| ..+++..|+|+|||+++|...+++++|||+.|++|||||...+++++||||.|+|...|
T Consensus 95 ~sDcEvIi~lY~k---hg---~~~~~~~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k~l~d~C 168 (543)
T KOG0571|consen 95 GSDCEVIIHLYEK---HG---GEQAICMLDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFASEMKCLEDDC 168 (543)
T ss_pred CCCceeeeehHhh---cC---chhHHHHhhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCCcEEEeeehhhhhhhh
Confidence 9999999999998 54 24899999999999999999999999999999999999999888999999999999999
Q ss_pred CCceEEecCCeEEEe-CCeeEEeecCCCCCCCCCCCCChhhhhcceeceeeccccc-CCCCCCC
Q 025673 179 GKSFAPFPKACFFTS-SGGLRSFEHPMNELKPVPRVDSSGQVCGSTFKVDAETKKE-TGMPRVG 240 (249)
Q Consensus 179 ~~~i~~lpPG~~~~~-~~gi~~y~~p~~~~~~~~~~d~~~~~~~~~f~~~~~~~~~-~~~p~~~ 240 (249)
.+ |..+||||++.+ -+++.+|++|..=-...|-+.-.-..+|.+| +.||.||. +++| .|
T Consensus 169 ~~-i~~fpPgh~y~~~~~~~~r~f~p~w~~~~~~s~p~d~~~~r~~~-~~aV~KRLM~d~p-~G 229 (543)
T KOG0571|consen 169 EK-IESFPPGHYYTSKTGKLTRYFNPEWFDENIPSTPLDYLALRHTL-EKAVRKRLMTDVP-FG 229 (543)
T ss_pred hc-eeecCCcceeecccccccCCCCchhhhccCCCCcccHHHHHHHH-HHHHHHHhhccCc-ee
Confidence 64 899999999966 4559999998842222443222334589999 99999997 8998 54
No 12
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=100.00 E-value=4.9e-33 Score=239.37 Aligned_cols=123 Identities=18% Similarity=0.254 Sum_probs=106.7
Q ss_pred cCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCCCChHHHHhhhccceeEEEEEeCCCCEEEEE
Q 025673 71 VVDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLA 146 (249)
Q Consensus 71 ~~~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G~~~~~~~l~~L~G~FAf~i~D~~~~~l~~a 146 (249)
..+++++++||||||+.+|+++|.. |.+.||+|+|+++|++ ||. +++++|+|||||+|||++ ++|++|
T Consensus 48 ~~~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~~---~G~----~~l~~L~G~FAfai~D~~-~~L~la 119 (199)
T cd01909 48 RSETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTR---LGL----HAFRLAEGDFCFFIEDGN-GRLTLA 119 (199)
T ss_pred eCCCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHHH---HhH----HHHHHcCEEEEEEEEcCC-CEEEEE
Confidence 4567999999999999999999853 7899999999999999 663 899999999999999999 999999
Q ss_pred EeCCCCccEEEEEecCCeEEEEecchhhhhc-----------------cCCceEEecCCeEE-Ee-C---Ce---eEEee
Q 025673 147 SDADGSVPFFWGTDSEGHLVLSDDVEIVKKG-----------------CGKSFAPFPKACFF-TS-S---GG---LRSFE 201 (249)
Q Consensus 147 RD~~G~rPLyy~~~~dg~~~fASe~~aL~~~-----------------~~~~i~~lpPG~~~-~~-~---~g---i~~y~ 201 (249)
|||+|+|||||... +.++||||+|+|... ..++|++|||||++ ++ + .+ .++||
T Consensus 120 RDr~GikPLYy~~~--~~l~FASEikaLla~~~~~~~~d~~~~~~~~T~~~gI~rL~PG~~l~~~~~g~~~~~~~~~~yW 197 (199)
T cd01909 120 TDHAGSVPVYLVQA--GEVWATTELKLLAAHEGPKAFPFKSAGADTVSGLTGVQRVPPGTVNVLTFDGGSYGTAESRRTW 197 (199)
T ss_pred ECCCCCcCeEEEEC--CeEEEEeCHHHHhhCcCCCcccCcccCCCCCChhcCceEECCCcEEEEeeCCcccceEEEEEee
Confidence 99999999999876 579999999999642 12579999999998 33 2 11 57899
Q ss_pred cC
Q 025673 202 HP 203 (249)
Q Consensus 202 ~p 203 (249)
+|
T Consensus 198 ~p 199 (199)
T cd01909 198 TP 199 (199)
T ss_pred cC
Confidence 86
No 13
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=99.97 E-value=1.9e-31 Score=226.60 Aligned_cols=144 Identities=17% Similarity=0.245 Sum_probs=117.1
Q ss_pred cHHHHHHHHHhcCCCccce----------ec--cceeEEeccCCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC
Q 025673 28 KNGLLANHFSSVHPGSVTV----------NL--GSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL 95 (249)
Q Consensus 28 ~~~~m~~~l~hRGpd~~~~----------~~--~rl~i~~~~~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~ 95 (249)
...+|+++++|||||+..+ .+ .+|+|.+.. .+.||+. +.+++++++|||+|||+.+|++
T Consensus 20 ~~~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~~rL~i~~~~-~~~QP~~----~~~~~~~lv~NGeIyN~~~l~~---- 90 (181)
T cd03766 20 LSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGDH-VTRQPLV----DQSTGNVLQWNGELYNIDGVED---- 90 (181)
T ss_pred hHHHHHHHHHhcCCCccCCEEeeccccEEEEEeeEEEecCCC-CCCCCCE----eCCCCEEEEECCEEECcccccC----
Confidence 3689999999999998421 22 277888864 5789983 4556899999999999999874
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC--ChHHHHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEec-CCeEEEEecch
Q 025673 96 NKTANEVIIVIEAYRTLRDRGP--YPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDS-EGHLVLSDDVE 172 (249)
Q Consensus 96 ~~~~sD~Evil~ly~~~~~~G~--~~~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~-dg~~~fASe~~ 172 (249)
+.+|+|+|+++|++ +|. .++.+++++|+|+|||++||..++++|++|||+|+|||||+... ++.++|||+..
T Consensus 91 --s~sDtEvi~~l~~~---~g~~~~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~l~~aS~~~ 165 (181)
T cd03766 91 --EENDTEVIFELLAN---CSSESQDILDVLSSIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLDPNGFELSISSVSG 165 (181)
T ss_pred --CCCHHHHHHHHHHH---HhhhHHHHHHHHHhcccceEEEEEeCCCCEEEEEECCCCCcCcEEEeeCCCCcEEEEEccC
Confidence 78999999999987 441 23458999999999999999989999999999999999999874 56899999976
Q ss_pred hhhhccCCceEEecCC
Q 025673 173 IVKKGCGKSFAPFPKA 188 (249)
Q Consensus 173 aL~~~~~~~i~~lpPG 188 (249)
.... ....++||+
T Consensus 166 ~~~~---~~~~e~~~~ 178 (181)
T cd03766 166 SSSG---SGFQEVLAG 178 (181)
T ss_pred CCCC---CceEECCCC
Confidence 4321 247888884
No 14
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=1.8e-29 Score=241.74 Aligned_cols=168 Identities=14% Similarity=0.145 Sum_probs=130.5
Q ss_pred HHHHHHHHHhcCCCccceec----------------------------c-------ceeEEecc-CCCCCCCcCcccccC
Q 025673 29 NGLLANHFSSVHPGSVTVNL----------------------------G-------SSGVIAYS-LNRQNPLLPRLFAVV 72 (249)
Q Consensus 29 ~~~m~~~l~hRGpd~~~~~~----------------------------~-------rl~i~~~~-~~~~QP~~~~~~~~~ 72 (249)
.-.++.+|.|||+|+..+.. | |++..+.+ ..+.||+.. .+.+
T Consensus 27 ~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~l~~l~G~~gIGH~RysT~G~~~~~n~QP~~~--~~~~ 104 (475)
T PRK07631 27 TYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQNGELDALKGKAAIGHVRYATAGGGGYENVQPLLF--RSQT 104 (475)
T ss_pred HHHHHHHhcCCCcccCeEEEEcCCEEEEEEcccccchhhchhhhhccCCCEEEEEeeccccCCCCcCCcCCeEe--EcCC
Confidence 56789999999999843221 1 22222211 245799831 1346
Q ss_pred CcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCCC-ChHHHHhhhccceeEEEEEeCCCCEEEEEE
Q 025673 73 DDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSSKNAFLAS 147 (249)
Q Consensus 73 ~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G~-~~~~~~l~~L~G~FAf~i~D~~~~~l~~aR 147 (249)
++++++|||+|||+++||++|.. |.+.||+|+|+++|.++..... .++.+++++|+|+|||+++|. ++++++|
T Consensus 105 g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~Li~~~~~~~~~eai~~~~~~l~G~yalvi~~~--~~l~aaR 182 (475)
T PRK07631 105 GSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHLIKRSGAPTLKEQIKNALSMLKGAYAFLLMTE--TELYVAL 182 (475)
T ss_pred CCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCceeeEEeC--CEEEEEE
Confidence 78999999999999999999963 8999999999999987311000 234678999999999999985 6799999
Q ss_pred eCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEE-EeCCeeEEee
Q 025673 148 DADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFF-TSSGGLRSFE 201 (249)
Q Consensus 148 D~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~~~gi~~y~ 201 (249)
||+|+|||||+.. ++.++||||.+||...+.+.+++|+||+++ ++++|++.|-
T Consensus 183 Dp~GirPL~~G~~-~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g~~~~~ 236 (475)
T PRK07631 183 DPNGLRPLSIGRL-GDAYVVASETCAFDVIGATYEREVEPGELLIINDEGMRSER 236 (475)
T ss_pred CCCCCCCEEEEEe-CCEEEEEeChHHHhhcCcceEEEcCCCeEEEEECCcEEEEe
Confidence 9999999999998 457999999999987776779999999998 5677766544
No 15
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=2.8e-29 Score=239.39 Aligned_cols=166 Identities=10% Similarity=0.132 Sum_probs=130.1
Q ss_pred HHHHHHHHHhcCCCccce---------------------------------ecc--ceeEEecc-CCCCCCCcCcccccC
Q 025673 29 NGLLANHFSSVHPGSVTV---------------------------------NLG--SSGVIAYS-LNRQNPLLPRLFAVV 72 (249)
Q Consensus 29 ~~~m~~~l~hRGpd~~~~---------------------------------~~~--rl~i~~~~-~~~~QP~~~~~~~~~ 72 (249)
+-.|+.+|.|||+|+..+ ++| |+++.+.. ..+.||+.. ...+
T Consensus 17 ~~~~L~~LqhRG~DsaGia~~~~~~~~~~k~~G~v~~~f~~~~~~~~~g~~~iGH~R~at~g~~~~~naqP~~~--~~~~ 94 (445)
T PRK08525 17 AYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNEDNLKTLKGEIAIGHNRYSTAGNDSILDAQPVFA--RYDL 94 (445)
T ss_pred HHHHHHHhhCcCcccceEEEEeCCEEEEEEcCcchhhccchhhhhccCCcEEEeecccccCCCCCCCCCCCeEe--ecCC
Confidence 567999999999988321 222 56666542 357899831 0146
Q ss_pred CcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCCC--ChHHHHhhhccceeEEEEEeCCCCEEEEE
Q 025673 73 DDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGP--YPADQVVRDIQGKFAFILYDSSSKNAFLA 146 (249)
Q Consensus 73 ~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G~--~~~~~~l~~L~G~FAf~i~D~~~~~l~~a 146 (249)
++++++|||+|||+.+||++|.. |.+.||+|+|+++|.++.. +. .++.+++++|+|+|||+++|+ ++++++
T Consensus 95 g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~~~~~-~~~~ea~~~~~~~L~G~fa~vi~~~--~~l~~~ 171 (445)
T PRK08525 95 GEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIARSKK-ESLKDRIIEALKKIIGAYCLVLLSR--SKMFAI 171 (445)
T ss_pred CCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHhcCCceEEEEEeC--CEEEEE
Confidence 78999999999999999999853 8999999999999986311 11 234578999999999999985 789999
Q ss_pred EeCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEE-Ee--CCeeEE
Q 025673 147 SDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFF-TS--SGGLRS 199 (249)
Q Consensus 147 RD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~--~~gi~~ 199 (249)
||++|+|||||+...++.++||||.++|.....+.+++++||+++ ++ ++|++.
T Consensus 172 RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g~~~~~~~~pGe~v~i~~~~~~~~~ 227 (445)
T PRK08525 172 RDPHGVRPLSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEMLIFEQGNDEFES 227 (445)
T ss_pred ECCCCCCCeEEEEecCCEEEEEECHHHhhccCCcEEEEeCCCeEEEEEcCCCceEE
Confidence 999999999999864467999999999976656678999999998 44 345543
No 16
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=4.1e-29 Score=239.40 Aligned_cols=171 Identities=11% Similarity=0.146 Sum_probs=135.4
Q ss_pred ccHHHHHHHHHhcCCCccce--------------------------------ecc--ceeEEecc-CCCCCCCcCccccc
Q 025673 27 LKNGLLANHFSSVHPGSVTV--------------------------------NLG--SSGVIAYS-LNRQNPLLPRLFAV 71 (249)
Q Consensus 27 ~~~~~m~~~l~hRGpd~~~~--------------------------------~~~--rl~i~~~~-~~~~QP~~~~~~~~ 71 (249)
..+-.++.+|.|||+|+..+ ++| |+++.+.. ..+.||+.. .+.
T Consensus 33 ~~~~~gL~~LqhRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~~l~G~~gIGH~RyaT~G~~~~~naqP~~~--~~~ 110 (474)
T PRK06388 33 SPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPATDPIKGIVGVGHTRYSTAGSKGVENAGPFVI--NSS 110 (474)
T ss_pred HHHHHHHHHhhCcCcCcceEEEEcCCEEEEEecCcchHHHhhhhhhcCCCcEEEeeeeeeecCCCCccCCCCeEe--ecC
Confidence 34778999999999998321 222 56666542 356799831 123
Q ss_pred CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHH-hCCC-ChHHHHhhhccceeEEEEEeCCCCEEEE
Q 025673 72 VDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLR-DRGP-YPADQVVRDIQGKFAFILYDSSSKNAFL 145 (249)
Q Consensus 72 ~~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~-~~G~-~~~~~~l~~L~G~FAf~i~D~~~~~l~~ 145 (249)
.++++++|||+|+|+.+||++|.. |.+.||+|+|+++|.+.. .++. .++.+++++|+|+|||++++. ++|++
T Consensus 111 ~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~li~~~~~~~~~~eai~~~~~~l~G~ya~vi~~~--~~l~a 188 (474)
T PRK06388 111 LGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISKYGLKEGFERSMERLRGAYACALMIN--DRLYA 188 (474)
T ss_pred CCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCceeEEEEEC--CEEEE
Confidence 678999999999999999999963 899999999999996432 2331 235679999999999999974 78999
Q ss_pred EEeCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEE-EeCCeeEEeec
Q 025673 146 ASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFF-TSSGGLRSFEH 202 (249)
Q Consensus 146 aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~~~gi~~y~~ 202 (249)
+||++|+|||||+.. ++.++||||.+||.....+.+++|+||+++ ++++|++.+..
T Consensus 189 ~RDp~GiRPL~~G~~-~~~~~~ASE~~Al~~~~~~~i~~l~PGeiv~i~~~g~~~~~~ 245 (474)
T PRK06388 189 IRDPNGIRPLVLGKN-FDGYIIASESCAIDALSGTTIKNVEPGEVVEVFDNGYKTIFK 245 (474)
T ss_pred EECCCCCCceEEEec-CCEEEEEEChHHHHhccCcEEEEeCCCEEEEEECCceEEEEe
Confidence 999999999999998 457999999999998776679999999998 56777755543
No 17
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=8.3e-29 Score=235.61 Aligned_cols=165 Identities=13% Similarity=0.152 Sum_probs=130.4
Q ss_pred ccHHHHHHHHHhcCCCccce----------------------------------eccceeEEeccCCCCCCCcCcccccC
Q 025673 27 LKNGLLANHFSSVHPGSVTV----------------------------------NLGSSGVIAYSLNRQNPLLPRLFAVV 72 (249)
Q Consensus 27 ~~~~~m~~~l~hRGpd~~~~----------------------------------~~~rl~i~~~~~~~~QP~~~~~~~~~ 72 (249)
..+-.++.+|.|||+|+..+ ++.|+++.+. ..+.||+. +.+.+
T Consensus 17 ~~l~~gL~~LqhRG~dsaGIa~~~~~~~~~K~~Glv~~vf~~~~~~~l~g~~~IGH~R~sT~G~-~~~~QP~~--~~~~~ 93 (442)
T PRK08341 17 KKAYYALIALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGGSLSRLKSNLAIGHVRYSTSGS-LSEVQPLE--VECCG 93 (442)
T ss_pred HHHHHHHHHhhccCcccceEEEECCcEEEEecCCchhhhhcccccccCCCCEEEEEeeccccCC-CcCcCCEE--eecCC
Confidence 34778999999999998322 1225555553 36789983 22346
Q ss_pred CcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHH-HhCCC--ChHHHHhhhccceeEEEEEeCCCCEEEE
Q 025673 73 DDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTL-RDRGP--YPADQVVRDIQGKFAFILYDSSSKNAFL 145 (249)
Q Consensus 73 ~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~-~~~G~--~~~~~~l~~L~G~FAf~i~D~~~~~l~~ 145 (249)
+.++++|||+|+|+.+||++|.. |.+.||+|+|++++... .++|. .++.+++++|+|+|||++++. ++|++
T Consensus 94 g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~~~~~~~~ai~~~~~~l~G~yal~i~~~--~~l~a 171 (442)
T PRK08341 94 YKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGISFLWHYSETGDEFEAMREVFNEVKGAYSVAILFD--GKIIV 171 (442)
T ss_pred CCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCceEEEEEEC--CEEEE
Confidence 78999999999999999999963 89999999999987432 22343 245678999999999999985 78999
Q ss_pred EEeCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEE-EeCCeeEE
Q 025673 146 ASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFF-TSSGGLRS 199 (249)
Q Consensus 146 aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~~~gi~~ 199 (249)
+||++|+|||||+.. + .++||||.+||...+. .+++|+||+++ ++++|++.
T Consensus 172 ~RD~~GirPL~~G~~-~-~~~~ASE~~Al~~~~~-~v~~l~PGeiv~i~~~g~~~ 223 (442)
T PRK08341 172 ARDPVGFRPLSYGEG-D-GHYFASEDSALRMFVN-EIRDVFPGEVFVVSEGEVES 223 (442)
T ss_pred EEcCCCceEEEEEEC-C-EEEEEeCcHHHHhhCC-eEEEeCCCEEEEEECCceEE
Confidence 999999999999984 4 4899999999987764 79999999998 56667654
No 18
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.96 E-value=1.4e-28 Score=213.91 Aligned_cols=155 Identities=13% Similarity=0.148 Sum_probs=125.2
Q ss_pred cHHHHHHHHHhcCCCcccee---------------------------------cc--ceeEEecc-CCCCCCCcCccccc
Q 025673 28 KNGLLANHFSSVHPGSVTVN---------------------------------LG--SSGVIAYS-LNRQNPLLPRLFAV 71 (249)
Q Consensus 28 ~~~~m~~~l~hRGpd~~~~~---------------------------------~~--rl~i~~~~-~~~~QP~~~~~~~~ 71 (249)
++..|+.++.|||||+..+. +| |+++.+.. ..+.|||. ..
T Consensus 15 ~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~g~~~~~n~qPf~----~~ 90 (215)
T cd00714 15 ILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVGIGHTRWATHGEPTDVNAHPHR----SC 90 (215)
T ss_pred HHHHHHHHHhccCcCcceEEEEeCCEEEEEEcCccHHHHHHHhhhccCCccEEEEEEEccCCCCCCccCCCCCC----cC
Confidence 36789999999999984321 22 56666642 35789993 34
Q ss_pred CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCCC---ChHHHHhhhccceeEEEEEeCCC-CEE
Q 025673 72 VDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGP---YPADQVVRDIQGKFAFILYDSSS-KNA 143 (249)
Q Consensus 72 ~~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G~---~~~~~~l~~L~G~FAf~i~D~~~-~~l 143 (249)
+++++++|||+|||+.+|+++|.. +.+.||+|+|+++|.++...+. .++.+++++|+|+|||++||+.. ++|
T Consensus 91 ~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~fa~~~~d~~~~~~l 170 (215)
T cd00714 91 DGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAYALAVISKDEPDEI 170 (215)
T ss_pred CCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccceEEEEEEeCCCCEE
Confidence 568999999999999999999953 7899999999999987433221 23457999999999999999876 499
Q ss_pred EEEEeCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEE
Q 025673 144 FLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFF 191 (249)
Q Consensus 144 ~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~ 191 (249)
+++|| .|||||+.. ++.++||||.++|...+. .+..|.+|.++
T Consensus 171 ~~~RD---~~PL~~~~~-~~~~~~aSE~~al~~~~~-~~~~~~~~~~~ 213 (215)
T cd00714 171 VAARN---GSPLVIGIG-DGENFVASDAPALLEHTR-RVIYLEDGDIA 213 (215)
T ss_pred EEEEC---CCCcEEEEc-CCeEEEEECHHHHHHhcC-EEEEECCCCEE
Confidence 99999 499999987 567999999999998875 58899999886
No 19
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=2.8e-28 Score=234.00 Aligned_cols=168 Identities=12% Similarity=0.160 Sum_probs=131.5
Q ss_pred cHHHHHHHHHhcCCCccce----------------------------------ecc--ceeEEecc-CCCCCCCcCcccc
Q 025673 28 KNGLLANHFSSVHPGSVTV----------------------------------NLG--SSGVIAYS-LNRQNPLLPRLFA 70 (249)
Q Consensus 28 ~~~~m~~~l~hRGpd~~~~----------------------------------~~~--rl~i~~~~-~~~~QP~~~~~~~ 70 (249)
..-.++.+|.|||+|+..+ ++| |+++.+.. ..+.||+.. ..
T Consensus 26 ~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~l~~l~G~~~IGH~RysT~G~~~~~naqP~~~--~~ 103 (484)
T PRK07272 26 LTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDKLTGQAAIGHVRYATAGSASIENIQPFLF--HF 103 (484)
T ss_pred HHHHHHHHhcccCCccceEEEEeCCeeEEEecCCcccchhcchhhHhcCCCcEEEEEeeccccCCCCcCCCCCEEe--ec
Confidence 3668899999999998321 111 34444321 246799831 11
Q ss_pred cCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCCC--ChHHHHhhhccceeEEEEEeCCCCEEE
Q 025673 71 VVDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGP--YPADQVVRDIQGKFAFILYDSSSKNAF 144 (249)
Q Consensus 71 ~~~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G~--~~~~~~l~~L~G~FAf~i~D~~~~~l~ 144 (249)
.+++++++|||+|+|+.+||++|.. |.+.||+|+|+++|.+... +. .++.+++++|+|+|||++++. ++|+
T Consensus 104 ~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~Li~~~~~-~~~~eai~~~~~~l~G~ya~~i~~~--~~l~ 180 (484)
T PRK07272 104 HDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHLIRRSHN-PTFMGKLKEALNTVKGGFAYLLLTE--DKLI 180 (484)
T ss_pred CCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHccCceeEEEEEC--CEEE
Confidence 4678999999999999999999963 8999999999999987311 11 245688999999999999985 7899
Q ss_pred EEEeCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEE-EeCCeeEEe
Q 025673 145 LASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFF-TSSGGLRSF 200 (249)
Q Consensus 145 ~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~~~gi~~y 200 (249)
++|||+|+||||||..+++.++||||.+||...+.+.+++|+||+++ ++++|++.+
T Consensus 181 a~RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~l~PGEiv~i~~~g~~~~ 237 (484)
T PRK07272 181 AALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIVIIDDEGIQYD 237 (484)
T ss_pred EEECCCCCCcEEEEEecCCEEEEEECHHHHhccCCceEEEcCCCeEEEEECCceEEE
Confidence 99999999999999864557999999999987766779999999998 566776554
No 20
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=2.3e-28 Score=234.23 Aligned_cols=168 Identities=12% Similarity=0.164 Sum_probs=130.5
Q ss_pred cHHHHHHHHHhcCCCccceec-----------------------------------cceeEEecc-CCCCCCCcCccccc
Q 025673 28 KNGLLANHFSSVHPGSVTVNL-----------------------------------GSSGVIAYS-LNRQNPLLPRLFAV 71 (249)
Q Consensus 28 ~~~~m~~~l~hRGpd~~~~~~-----------------------------------~rl~i~~~~-~~~~QP~~~~~~~~ 71 (249)
..-.++.+|.|||+|+..+.. .|++..+.+ ..+.||+... ..
T Consensus 26 ~~~~gL~~LqhRG~dsaGia~~d~~~~~~~k~~GlV~~vf~~~~l~~l~g~~~IGHvRyaT~G~~~~~naqP~~~~--~~ 103 (471)
T PRK06781 26 VSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKSAIGHVRYATAGGSEVANVQPLLFR--FS 103 (471)
T ss_pred HHHHHHHHhhCcCcCcceEEEEeCCEEEEEecCcchhhhcchhhHhcCCCCEEEEEeEcccCCCCCcCCCCCeEEe--cC
Confidence 355799999999999843221 122322321 2457998321 13
Q ss_pred CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCCC-ChHHHHhhhccceeEEEEEeCCCCEEEEE
Q 025673 72 VDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSSKNAFLA 146 (249)
Q Consensus 72 ~~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G~-~~~~~~l~~L~G~FAf~i~D~~~~~l~~a 146 (249)
+++++++|||+|+|+++||++|.. |.+.||+|+|+++|.++..... .++.+++++|+|+|||+++|. ++++++
T Consensus 104 ~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~Li~~~~~~~~~eai~~~~~~l~G~ya~vi~~~--~~l~aa 181 (471)
T PRK06781 104 DHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRSTKDSLIESVKEALNKVKGAFAYLLLTG--NEMIVA 181 (471)
T ss_pred CCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCcEEEEEEEC--CEEEEE
Confidence 678999999999999999999963 8999999999999987321100 245678999999999999985 789999
Q ss_pred EeCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEE-EeCCeeEEe
Q 025673 147 SDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFF-TSSGGLRSF 200 (249)
Q Consensus 147 RD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~~~gi~~y 200 (249)
||++|+|||||+.. ++.++||||.++|.....+.+++|+||+++ ++++|++.|
T Consensus 182 RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~ir~v~pGeiv~i~~~g~~~~ 235 (471)
T PRK06781 182 LDPNGFRPLSIGKM-GDAYVVASETCAFDVVGATYIRDVEPGELLIINDEGIHVD 235 (471)
T ss_pred ECCCCCCCeEEEEE-CCEEEEEECchHhhhcCCcEEEEeCCCEEEEEECCceEEE
Confidence 99999999999998 457999999999987666678999999998 566776544
No 21
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=1.9e-28 Score=236.35 Aligned_cols=211 Identities=15% Similarity=0.192 Sum_probs=149.7
Q ss_pred HHHHHHHHHhcCCCccce---------------------------------ecc--ceeEEecc-CCCCCCCcCcccccC
Q 025673 29 NGLLANHFSSVHPGSVTV---------------------------------NLG--SSGVIAYS-LNRQNPLLPRLFAVV 72 (249)
Q Consensus 29 ~~~m~~~l~hRGpd~~~~---------------------------------~~~--rl~i~~~~-~~~~QP~~~~~~~~~ 72 (249)
.-.++.+|.|||+|+..+ ++| |+++.+.+ ..+.|||... ....
T Consensus 40 ~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~d~~l~~l~G~i~IGHvR~sT~G~~~~~naQP~~~~-~~~~ 118 (510)
T PRK07847 40 TYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHVAIGHCRYSTTGASTWENAQPTFRA-TAAG 118 (510)
T ss_pred HHHHHHHHhhhCcCcccEEEEeCCEEEEEecCccHHHhhchhhhhhcCCcEEEEeccCCcCCCCcccCCCCcCcc-cCCC
Confidence 457899999999998321 111 44444432 2467998311 0126
Q ss_pred CcEEEEEEEEEcchHHHHHHhcC---------CCCCCHHHHHHHHHHHHHhCCC--ChHHHHhhhccceeEEEEEeCCCC
Q 025673 73 DDIFCLFQGHIENVALLKQQYGL---------NKTANEVIIVIEAYRTLRDRGP--YPADQVVRDIQGKFAFILYDSSSK 141 (249)
Q Consensus 73 ~~~~lv~NGeI~N~~eL~~~L~~---------~~~~sD~Evil~ly~~~~~~G~--~~~~~~l~~L~G~FAf~i~D~~~~ 141 (249)
++++++|||+|+|+++||++|.. |.+.||+|+|+++|.++.+.+. ..+.+++++|+|+|||+++|. +
T Consensus 119 g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~~~~~~~~eai~~~~~~l~G~yA~vi~d~--~ 196 (510)
T PRK07847 119 GGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHGAADSTLEQAALELLPTVRGAFCLVFMDE--H 196 (510)
T ss_pred CCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhhhheEEEEEEC--C
Confidence 78999999999999999999842 6899999999999987321111 234578999999999999995 6
Q ss_pred EEEEEEeCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEE-EeCCeeE--EeecCCCCCC-----CCCCC
Q 025673 142 NAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFF-TSSGGLR--SFEHPMNELK-----PVPRV 213 (249)
Q Consensus 142 ~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~~~gi~--~y~~p~~~~~-----~~~~~ 213 (249)
+|+++||++|+|||||+.. ++.++||||.++|.....+.+++|+||+++ ++.++++ +||.+....= ..-|.
T Consensus 197 ~L~aaRDp~GirPL~~g~~-~~~~~vASE~~AL~~~g~~~ir~v~PGeiv~I~~~gv~~~~~~~~~~~~C~fE~vYfarp 275 (510)
T PRK07847 197 TLYAARDPQGVRPLVLGRL-ERGWVVASETAALDIVGASFVREIEPGELIAIDADGLRSTRFAEPTPKGCVFEYVYLARP 275 (510)
T ss_pred EEEEEECCCCCCCcEEEEE-CCeEEEEechHHHhccCCcEEEEECcCEEEEEECCceEEEeccCCCCCCCeEEEEEecCC
Confidence 8999999999999999998 457999999999987655679999999998 5666643 4665322111 11166
Q ss_pred CCh---------hhhhcceeceeeccccc--CCCCCCCccc
Q 025673 214 DSS---------GQVCGSTFKVDAETKKE--TGMPRVGSAA 243 (249)
Q Consensus 214 d~~---------~~~~~~~f~~~~~~~~~--~~~p~~~~~~ 243 (249)
||. -..+|+.+..+...+.. ..||..|..+
T Consensus 276 dS~~~g~~v~~~R~~~G~~La~~~~~~~D~VvpVP~sG~~~ 316 (510)
T PRK07847 276 DTTIAGRSVHAARVEIGRRLAREHPVEADLVIPVPESGTPA 316 (510)
T ss_pred cceeCCeEHHHHHHHHHHHHHhhCCCCCeEEEeccCchHHH
Confidence 652 12467766555444433 5678666544
No 22
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.96 E-value=3.8e-29 Score=199.99 Aligned_cols=120 Identities=19% Similarity=0.413 Sum_probs=73.9
Q ss_pred cceeEEeccCCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCCCChHHHHh
Q 025673 49 GSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGPYPADQVV 124 (249)
Q Consensus 49 ~rl~i~~~~~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G~~~~~~~l 124 (249)
.|+++.+. ..+.||+. .+.++++++++||+|||+++|+++|.. +.+.+|+|+++++|+++.++| .+++
T Consensus 2 ~rl~~~~~-~~~~QP~~---~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~~~----~~~~ 73 (125)
T PF13537_consen 2 VRLSTDDS-DEGAQPFV---SSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYREWG----EDFL 73 (125)
T ss_dssp ---------------------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH---HG----GGGG
T ss_pred cccccccc-cccccccc---cccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH----HHHH
Confidence 36777444 47889993 146788999999999999999999964 688999999999998633344 3899
Q ss_pred hhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecchhhhh
Q 025673 125 RDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKK 176 (249)
Q Consensus 125 ~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~ 176 (249)
++|+|+|||++||+++++++++|||+|+|||||+..+++.++||||+++|++
T Consensus 74 ~~l~G~fa~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a 125 (125)
T PF13537_consen 74 KRLDGPFAFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA 125 (125)
T ss_dssp GT--EEEEEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred HhCCceEEEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence 9999999999999988999999999999999999995358999999999863
No 23
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=4.3e-28 Score=233.42 Aligned_cols=168 Identities=17% Similarity=0.197 Sum_probs=130.8
Q ss_pred HHHHHHHHHhcCCCccce---------------------------------ecc--ceeEEecc-CCCCCCCcCcccccC
Q 025673 29 NGLLANHFSSVHPGSVTV---------------------------------NLG--SSGVIAYS-LNRQNPLLPRLFAVV 72 (249)
Q Consensus 29 ~~~m~~~l~hRGpd~~~~---------------------------------~~~--rl~i~~~~-~~~~QP~~~~~~~~~ 72 (249)
.-.++.+|.|||+|+..+ ++| |+++.+.+ ..+.|||... +..
T Consensus 50 ~~~gL~~LqHRGqdsaGIa~~~~~~~~~~K~~Glv~~vf~~~~l~~l~G~i~IGHvRysT~G~~~~~naQP~~~~--~~~ 127 (500)
T PRK07349 50 TYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDLAVGHTRYSTTGSSRKANAQPAVLE--TRL 127 (500)
T ss_pred HHHHHHHhcccCcCcceEEEEeCCEEEEEecCcchhhhcchhhhhcCCCCEEEEEeecccCCCCCccCCCCeEee--cCC
Confidence 457899999999998321 111 44444432 2468998311 135
Q ss_pred CcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCC-C--ChHHHHhhhccceeEEEEEeCCCCEEEE
Q 025673 73 DDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRG-P--YPADQVVRDIQGKFAFILYDSSSKNAFL 145 (249)
Q Consensus 73 ~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G-~--~~~~~~l~~L~G~FAf~i~D~~~~~l~~ 145 (249)
++++++|||+|+|+.+||++|.. |.+.||+|+|+++|.+....| . .++.+++++|+|+|||++++. ++|++
T Consensus 128 g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~~~eai~~~~~~l~G~ya~vi~~~--~~l~a 205 (500)
T PRK07349 128 GPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDWLEAAISAFQRCQGAFSLVIGTP--EGLMG 205 (500)
T ss_pred CCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhEEEEEEeC--CEEEE
Confidence 78999999999999999999953 899999999999997643223 1 235678999999999999874 78999
Q ss_pred EEeCCCCccEEEEEec---CCeEEEEecchhhhhccCCceEEecCCeEE-EeCCeeEEe
Q 025673 146 ASDADGSVPFFWGTDS---EGHLVLSDDVEIVKKGCGKSFAPFPKACFF-TSSGGLRSF 200 (249)
Q Consensus 146 aRD~~G~rPLyy~~~~---dg~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~~~gi~~y 200 (249)
+||++|+|||||+... ++.++||||.++|.....+.+++++||+++ ++++|++.|
T Consensus 206 aRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir~v~PGeiv~i~~~g~~~~ 264 (500)
T PRK07349 206 VRDPNGIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELVWITEGGLSSF 264 (500)
T ss_pred EECCCCCCCeEEEecccCCCCeEEEEeccchhhhcCCceEEEeCCCeEEEEECCceEEE
Confidence 9999999999999762 247999999999987666779999999998 566776554
No 24
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=1.2e-27 Score=229.86 Aligned_cols=169 Identities=11% Similarity=0.168 Sum_probs=131.6
Q ss_pred ccHHHHHHHHHhcCCCccce------------------------------------eccceeEEecc-CCCCCCCcCccc
Q 025673 27 LKNGLLANHFSSVHPGSVTV------------------------------------NLGSSGVIAYS-LNRQNPLLPRLF 69 (249)
Q Consensus 27 ~~~~~m~~~l~hRGpd~~~~------------------------------------~~~rl~i~~~~-~~~~QP~~~~~~ 69 (249)
...-.++.+|.|||+|+..+ ++.|+++.+.+ ..+.|||...
T Consensus 35 ~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~~l~~l~G~~~IGH~R~sT~G~~~~~n~QP~~~~-- 112 (479)
T PRK09123 35 ALTALGLHALQHRGQEAAGIVSFDGERFHSERRMGLVGDHFTDADVIARLPGNRAIGHVRYSTTGETILRNVQPLFAE-- 112 (479)
T ss_pred HHHHHHHHHhcCcCccCCEEEEEECCEEEEEecCcchhhhhhhhhhhhccCCCEEEEEEecccCCCCCcCCCCCceee--
Confidence 34667899999999998321 11144444432 3567998311
Q ss_pred ccCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCCC--ChHHHHhhhccceeEEEEEeCCCCEE
Q 025673 70 AVVDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGP--YPADQVVRDIQGKFAFILYDSSSKNA 143 (249)
Q Consensus 70 ~~~~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G~--~~~~~~l~~L~G~FAf~i~D~~~~~l 143 (249)
..+++++++|||+|+|+.+||++|.. |.+.||+|+|+++|.+... +. ..+.+++++|+|+|||++|+. ++|
T Consensus 113 ~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~Li~~~~~-~~~~eai~~~~~~L~G~ya~vil~~--~~l 189 (479)
T PRK09123 113 LEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHLIARSRK-ASFLDRFIDALRQVEGAYSLVALTN--TKL 189 (479)
T ss_pred cCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHhhcceeEEEEEC--CEE
Confidence 13678999999999999999999953 8899999999999976321 11 234578999999999999986 689
Q ss_pred EEEEeCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEE-EeCCe-eEEee
Q 025673 144 FLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFF-TSSGG-LRSFE 201 (249)
Q Consensus 144 ~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~~~g-i~~y~ 201 (249)
+++||++|+|||||+.. ++.++||||.++|.....+.+++|+||+++ ++.++ ++.+.
T Consensus 190 ~a~RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~~r~v~pGeiv~i~~~g~~~~~~ 248 (479)
T PRK09123 190 IGARDPLGIRPLVLGEL-DGSPILASETCALDIIGAEFVRDVEPGELVVIDEDGSIESIK 248 (479)
T ss_pred EEEECCCCCCceEEEEE-CCEEEEEECchHHhccCCceEEEECCCeEEEEeCCCcEEEEE
Confidence 99999999999999998 567999999999976555679999999998 55566 65543
No 25
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=99.96 E-value=3.1e-27 Score=209.88 Aligned_cols=170 Identities=11% Similarity=0.124 Sum_probs=130.7
Q ss_pred ccHHHHHHHHHhcCCCccceec-----------------------------------cceeEEecc-CCCCCCCcCcccc
Q 025673 27 LKNGLLANHFSSVHPGSVTVNL-----------------------------------GSSGVIAYS-LNRQNPLLPRLFA 70 (249)
Q Consensus 27 ~~~~~m~~~l~hRGpd~~~~~~-----------------------------------~rl~i~~~~-~~~~QP~~~~~~~ 70 (249)
.++..|+++|.|||||+..+.. .|+++.+.. ..+.|||.. ..
T Consensus 14 ~~~~~~l~~l~~RG~D~~Gi~~~d~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~lgH~R~at~g~~~~~n~qPf~~--~~ 91 (252)
T cd00715 14 RLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIAIGHVRYSTAGSSSLENAQPFVV--NS 91 (252)
T ss_pred HHHHHHHHHHhccCcceeEEEEEeCCEEEEEecCCcHHHhhcccchhhCCCcEEEEEEEcccCCCCCccCCCCcEE--ec
Confidence 3367899999999999843211 133333331 346799831 01
Q ss_pred cCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCCC--ChHHHHhhhccceeEEEEEeCCCCEEE
Q 025673 71 VVDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGP--YPADQVVRDIQGKFAFILYDSSSKNAF 144 (249)
Q Consensus 71 ~~~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G~--~~~~~~l~~L~G~FAf~i~D~~~~~l~ 144 (249)
.+++++++|||+|+|+++|+++|.. +.+.+|+|+|+++|.++.+.+. .++.++++.|+|+||++++|. ++|+
T Consensus 92 ~~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~~~~~~~~~~~al~~~~~~l~G~~a~~~~d~--~~l~ 169 (252)
T cd00715 92 PLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLFEAIIDALERVKGAYSLVIMTA--DGLI 169 (252)
T ss_pred CCCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHhhccCCHHHHHHHHHHhccCceEEEEEEC--CEEE
Confidence 3578999999999999999999853 6789999999999987322111 234578999999999999997 8999
Q ss_pred EEEeCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEE-EeCCeeEEe
Q 025673 145 LASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFF-TSSGGLRSF 200 (249)
Q Consensus 145 ~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~~~gi~~y 200 (249)
++||++|+|||||+..+++.++||||.++|.....+.+++||||+++ ++.+++..+
T Consensus 170 ~~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~~~~~~~~l~pg~~~~i~~~~~~~~ 226 (252)
T cd00715 170 AVRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVIDDDGLESS 226 (252)
T ss_pred EEECCCCCCCeEEEEeCCCeEEEEECHHHhcccCCcEEEEcCCCeEEEEECCceEEE
Confidence 99999999999999874368999999999987544578999999998 455666554
No 26
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.95 E-value=6.6e-27 Score=224.41 Aligned_cols=168 Identities=13% Similarity=0.174 Sum_probs=130.9
Q ss_pred HHHHHHHHHhcCCCcccee-----------------------------------ccceeEEecc-CCCCCCCcCcccccC
Q 025673 29 NGLLANHFSSVHPGSVTVN-----------------------------------LGSSGVIAYS-LNRQNPLLPRLFAVV 72 (249)
Q Consensus 29 ~~~m~~~l~hRGpd~~~~~-----------------------------------~~rl~i~~~~-~~~~QP~~~~~~~~~ 72 (249)
+-.++.+|.|||+|+..+. +-|+++.+.+ ..+.|||... ..+
T Consensus 32 ~~~gL~~LqhRG~dsaGIa~~~~~~~~~~k~~G~v~~~f~~~~l~~l~g~~~iGHvR~sT~G~~~~~n~qPf~~~--~~~ 109 (469)
T PRK05793 32 TYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNSAIGHVRYSTTGASDLDNAQPLVAN--YKL 109 (469)
T ss_pred HHHHHHHHhhhCCCcceEEEEeCCEEEEEecccccccccchhhHhccCCcEEEEEeecccCCCCCCCCCCCeEee--cCC
Confidence 4568899999999983221 1134444332 2467998321 136
Q ss_pred CcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCCC-ChHHHHhhhccceeEEEEEeCCCCEEEEEE
Q 025673 73 DDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSSKNAFLAS 147 (249)
Q Consensus 73 ~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G~-~~~~~~l~~L~G~FAf~i~D~~~~~l~~aR 147 (249)
++++++|||+|+|+++||++|.. |.+.+|+|+|+++|.++...+. .++.+++++|+|+||+++++. ++++++|
T Consensus 110 g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~li~~~~~~~~~~ai~~~~~~l~G~ya~vi~~~--~~l~a~R 187 (469)
T PRK05793 110 GSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLEKALVDAIQAIKGSYALVILTE--DKLIGVR 187 (469)
T ss_pred CCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhhceEEEEEC--CEEEEEE
Confidence 78999999999999999999853 8899999999999987322111 245679999999999999985 7899999
Q ss_pred eCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEE-EeCCeeEEee
Q 025673 148 DADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFF-TSSGGLRSFE 201 (249)
Q Consensus 148 D~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~~~gi~~y~ 201 (249)
|++|+|||||+.. ++.++||||.++|.....+.+++|+||+++ ++.++++.+-
T Consensus 188 D~~GirPL~~g~~-~~~~~vASE~~al~~~g~~~~r~v~pGeiv~i~~~g~~~~~ 241 (469)
T PRK05793 188 DPHGIRPLCLGKL-GDDYILSSESCALDTIGAEFIRDVEPGEIVIIDEDGIKSIK 241 (469)
T ss_pred CCCCCCCcEEEEE-CCEEEEEEChHHHhhcCcceEEEeCCCeEEEEECCceEEEe
Confidence 9999999999998 467999999999987766779999999998 4566765543
No 27
>PLN02440 amidophosphoribosyltransferase
Probab=99.95 E-value=6.4e-27 Score=224.97 Aligned_cols=166 Identities=11% Similarity=0.114 Sum_probs=128.7
Q ss_pred cHHHHHHHHHhcCCCccceec---------------------------------c--ceeEEec-cCCCCCCCcCccccc
Q 025673 28 KNGLLANHFSSVHPGSVTVNL---------------------------------G--SSGVIAY-SLNRQNPLLPRLFAV 71 (249)
Q Consensus 28 ~~~~m~~~l~hRGpd~~~~~~---------------------------------~--rl~i~~~-~~~~~QP~~~~~~~~ 71 (249)
..-.|+.+|.|||+|+..+.. | |++..+. +..+.|||.. ...
T Consensus 16 ~~~~~L~~LqHRGqds~Gi~~~d~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT~G~~~~~n~QPf~~--~~~ 93 (479)
T PLN02440 16 LCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESKLDQLPGDIAIGHVRYSTAGASSLKNVQPFVA--NYR 93 (479)
T ss_pred HHHHHHHHHHhhCcccceEEEEcCCEEEEEecCCchhhhcchhhhhccCCcEEEEEEeccccCCCCccCCCCcee--ecC
Confidence 367899999999999843211 1 3333332 2356799831 013
Q ss_pred CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCCC-ChHHHHhhhccceeEEEEEeCCCCEEEEE
Q 025673 72 VDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSSKNAFLA 146 (249)
Q Consensus 72 ~~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G~-~~~~~~l~~L~G~FAf~i~D~~~~~l~~a 146 (249)
+++++++|||+|+|+++||++|.. |.+.||+|+|+++|.+...... ..+.+++++|+|+|||++||. ++|+++
T Consensus 94 ~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~~~a~~~~~~~l~G~fa~vi~~~--~~l~a~ 171 (479)
T PLN02440 94 FGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKARPFFSRIVDACEKLKGAYSMVFLTE--DKLVAV 171 (479)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHhccceeeeEEEC--CEEEEE
Confidence 467999999999999999999863 7899999999999976311000 124578999999999999995 579999
Q ss_pred EeCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEE-EeCCee
Q 025673 147 SDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFF-TSSGGL 197 (249)
Q Consensus 147 RD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~~~gi 197 (249)
||++|+|||||+...++.++||||.++|.....+.+++|+||+++ ++++|+
T Consensus 172 RD~~G~RPL~~g~~~~~~~~vASE~~al~~~g~~~ir~v~PGeiv~i~~~g~ 223 (479)
T PLN02440 172 RDPHGFRPLVMGRRSNGAVVFASETCALDLIGATYEREVNPGEVIVVDKDKG 223 (479)
T ss_pred ECCCCCCceEEEEeCCCEEEEEECchHHhccCCcEEEEeCCCeEEEEECCCc
Confidence 999999999999764567999999999988766789999999998 566663
No 28
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.95 E-value=7.8e-27 Score=229.95 Aligned_cols=165 Identities=15% Similarity=0.164 Sum_probs=132.8
Q ss_pred cHHHHHHHHHhcCCCccceec---------------------------------c--ceeEEecc-CCCCCCCcCccccc
Q 025673 28 KNGLLANHFSSVHPGSVTVNL---------------------------------G--SSGVIAYS-LNRQNPLLPRLFAV 71 (249)
Q Consensus 28 ~~~~m~~~l~hRGpd~~~~~~---------------------------------~--rl~i~~~~-~~~~QP~~~~~~~~ 71 (249)
++..|+.++.|||||+..+.. | |+++.+.. ..+.||+. +.
T Consensus 16 ~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~~n~qP~~----~~ 91 (604)
T PRK00331 16 ILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAKLEEEPLPGTTGIGHTRWATHGKPTERNAHPHT----DC 91 (604)
T ss_pred HHHHHHHHHhccCcCcceEEEEeCCEEEEEECCcCHHHHHhhhccccCCCcEEEEEEecCCCCCCccccCCccc----cC
Confidence 467899999999999844321 1 45555532 35679983 45
Q ss_pred CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCCC---ChHHHHhhhccceeEEEEEeCCC-CEE
Q 025673 72 VDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGP---YPADQVVRDIQGKFAFILYDSSS-KNA 143 (249)
Q Consensus 72 ~~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G~---~~~~~~l~~L~G~FAf~i~D~~~-~~l 143 (249)
+++++++|||+|||+++||++|.. +.+.||+|+|+++|.++.++|. .++.+++++|+|+|||++||... +++
T Consensus 92 ~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~d~~~~~~l 171 (604)
T PRK00331 92 SGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEGAYALAVIDKDEPDTI 171 (604)
T ss_pred CCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHhccCeeEEEEEecCCCCEE
Confidence 688999999999999999999953 7899999999999987533342 23567999999999999999876 899
Q ss_pred EEEEeCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEE-EeCCeeEEee
Q 025673 144 FLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFF-TSSGGLRSFE 201 (249)
Q Consensus 144 ~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~~~gi~~y~ 201 (249)
+++||+ |||||+.. ++.++||||.++|...+. .+..|+||+++ +++++++.|-
T Consensus 172 ~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~-~~~~l~pg~~~~i~~~~~~~~~ 225 (604)
T PRK00331 172 VAARNG---SPLVIGLG-EGENFLASDALALLPYTR-RVIYLEDGEIAVLTRDGVEIFD 225 (604)
T ss_pred EEEECC---CceEEEEc-CCeEEEEECHHHHHHhcC-EEEEECCCeEEEEECCeEEEEe
Confidence 999995 99999997 467999999999988764 58999999998 5667766554
No 29
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.95 E-value=6.3e-27 Score=226.16 Aligned_cols=164 Identities=11% Similarity=0.109 Sum_probs=127.2
Q ss_pred HHHHHHHHHhcCCCccceec----------------------------c-------ceeEEecc-CCCCCCCcCcccccC
Q 025673 29 NGLLANHFSSVHPGSVTVNL----------------------------G-------SSGVIAYS-LNRQNPLLPRLFAVV 72 (249)
Q Consensus 29 ~~~m~~~l~hRGpd~~~~~~----------------------------~-------rl~i~~~~-~~~~QP~~~~~~~~~ 72 (249)
.-.|+.+|.|||||+..+.. | |+++.+.+ ..+.|||. .+..
T Consensus 17 ~~~~L~aLqHRGqdsaGi~~~~~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT~G~~~~~n~QP~~---~~~~ 93 (501)
T PRK09246 17 IYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFRTRHMRRLQGNMGIGHVRYPTAGSSSSAEAQPFY---VNSP 93 (501)
T ss_pred HHHHHHHHhccCcceeEEEEEeCCEEEEEccCCccccccCcchHhhCCCCEEEEEEcCCcCCCCCcccCCCEE---EeCC
Confidence 56899999999999843221 1 34444432 35679983 2334
Q ss_pred CcEEEEEEEEEcchHHHHHHhcC-----CCCCCHHHHHHHHHHHHHhC--C------C--ChHHHHhhhccceeEEEEEe
Q 025673 73 DDIFCLFQGHIENVALLKQQYGL-----NKTANEVIIVIEAYRTLRDR--G------P--YPADQVVRDIQGKFAFILYD 137 (249)
Q Consensus 73 ~~~~lv~NGeI~N~~eL~~~L~~-----~~~~sD~Evil~ly~~~~~~--G------~--~~~~~~l~~L~G~FAf~i~D 137 (249)
++++++|||+|+|+++||++|.. |.+.||+|+|+++|.++... | . .++.+++++|+|+|||+++.
T Consensus 94 ~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~g~~~~~~~l~eai~~~~~~l~Gays~v~~~ 173 (501)
T PRK09246 94 YGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFRGLPLTPEDIFAAVAAVHRRVRGAYAVVAMI 173 (501)
T ss_pred CCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcccceeeEEEe
Confidence 46999999999999999999852 78999999999999764211 1 1 23457899999999999884
Q ss_pred CCCCEEEEEEeCCCCccEEEEEec---CCeEEEEecchhhhhccCCceEEecCCeEE-EeCCe
Q 025673 138 SSSKNAFLASDADGSVPFFWGTDS---EGHLVLSDDVEIVKKGCGKSFAPFPKACFF-TSSGG 196 (249)
Q Consensus 138 ~~~~~l~~aRD~~G~rPLyy~~~~---dg~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~~~g 196 (249)
. .++|+++||++|+|||||+..+ ++.++||||.+||.....+.|++|+||+++ ++++|
T Consensus 174 ~-~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g 235 (501)
T PRK09246 174 I-GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVAPGEAIYITEDG 235 (501)
T ss_pred c-CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEEeCCCeEEEEECCC
Confidence 3 4679999999999999999873 347999999999998776789999999998 55555
No 30
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.95 E-value=7.5e-27 Score=230.20 Aligned_cols=165 Identities=12% Similarity=0.139 Sum_probs=132.3
Q ss_pred cHHHHHHHHHhcCCCccc-----------------------------------eeccceeEEecc-CCCCCCCcCccccc
Q 025673 28 KNGLLANHFSSVHPGSVT-----------------------------------VNLGSSGVIAYS-LNRQNPLLPRLFAV 71 (249)
Q Consensus 28 ~~~~m~~~l~hRGpd~~~-----------------------------------~~~~rl~i~~~~-~~~~QP~~~~~~~~ 71 (249)
.+..|+.+|.|||||+.. +++.|+++.+.. ..+.|||. ..
T Consensus 15 ~~~~~l~~l~hRG~ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~g~~~~~n~qP~~----~~ 90 (607)
T TIGR01135 15 ILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANKLGEKPLPGGVGIGHTRWATHGKPTEENAHPHT----DE 90 (607)
T ss_pred HHHHHHHHHhccCcccceEEEEeCCEEEEEECCcCHHHHHhhhhcccCCccEEEEEeeccCCCCCCccCCCCcC----cC
Confidence 467899999999999843 222266666643 35789993 45
Q ss_pred CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCCC---ChHHHHhhhccceeEEEEEeCCC-CEE
Q 025673 72 VDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGP---YPADQVVRDIQGKFAFILYDSSS-KNA 143 (249)
Q Consensus 72 ~~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G~---~~~~~~l~~L~G~FAf~i~D~~~-~~l 143 (249)
+++++++|||+|||+++||++|.. |.+.+|+|+|+++|.++.+.|. .++.+++++|+|+|||++||+.+ +++
T Consensus 91 ~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~~a~~i~~~~~~~~l 170 (607)
T TIGR01135 91 GGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGGDLLEAVQKALKQLRGAYALAVLHADHPETL 170 (607)
T ss_pred CCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCceEEEEEecCCCCEE
Confidence 678999999999999999999963 7899999999999987433221 24567999999999999999865 569
Q ss_pred EEEEeCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEE-EeCCeeEEee
Q 025673 144 FLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFF-TSSGGLRSFE 201 (249)
Q Consensus 144 ~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~~~gi~~y~ 201 (249)
+++||+ |||||+.. ++.++||||.++|...+. .+..|+||+++ ++.++++.|-
T Consensus 171 ~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~-~~~~l~pg~~~~~~~~~~~~~~ 224 (607)
T TIGR01135 171 VAARSG---SPLIVGLG-DGENFVASDVTALLPVTR-RVIYLEDGDIAILTRDGVRIYN 224 (607)
T ss_pred EEEECC---CceEEEEC-CCeEEEEEChHHHHhhCC-EEEEeCCCeEEEEECCeeEEEe
Confidence 999994 99999997 567999999999988764 58899999998 5666766554
No 31
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.95 E-value=8.3e-27 Score=207.16 Aligned_cols=125 Identities=12% Similarity=0.123 Sum_probs=103.0
Q ss_pred CCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHH-hCCC--C-------------
Q 025673 59 NRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLR-DRGP--Y------------- 118 (249)
Q Consensus 59 ~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~-~~G~--~------------- 118 (249)
.+.|||. .++++++|||+|+|+.+||++|.. +.+.||+|+|+++|.... .+|. .
T Consensus 95 ~n~qP~~------~~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi~~ll~~~~~~~g~~~~a~~~~i~~~~~~~ 168 (249)
T cd01907 95 YGAHPFS------IGDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYYKHIIRMPEEER 168 (249)
T ss_pred cCCCCee------cCCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCChHHHHHHHhcCCHhHH
Confidence 3678982 348999999999999999999863 789999999999997532 2332 0
Q ss_pred ------hHHHHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecchhhhhcc---CCceEEecCCe
Q 025673 119 ------PADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGC---GKSFAPFPKAC 189 (249)
Q Consensus 119 ------~~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~---~~~i~~lpPG~ 189 (249)
.+..++++|+|+|||++++. +.++++|||+|.|||||+.. ++.++||||.++|...+ .+.+.+++||+
T Consensus 169 ~~~~~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~~~~~~~~~~~l~pGe 245 (249)
T cd01907 169 ELLLALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET-DDYVAIASEECAIREIPDRDNAKVWEPRPGE 245 (249)
T ss_pred HHHHHHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE-CCEEEEEEcHHHHhccCccchheEecCCCCc
Confidence 12357899999999999985 56999999999999999998 56799999999998664 45689999999
Q ss_pred EEE
Q 025673 190 FFT 192 (249)
Q Consensus 190 ~~~ 192 (249)
+++
T Consensus 246 ~v~ 248 (249)
T cd01907 246 YVI 248 (249)
T ss_pred eEe
Confidence 873
No 32
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.94 E-value=5.1e-26 Score=216.95 Aligned_cols=167 Identities=13% Similarity=0.174 Sum_probs=129.1
Q ss_pred ccHHHHHHHHHhcCCCccceec----------------------------c-------ceeEEec-cCCCCCCCcCcccc
Q 025673 27 LKNGLLANHFSSVHPGSVTVNL----------------------------G-------SSGVIAY-SLNRQNPLLPRLFA 70 (249)
Q Consensus 27 ~~~~~m~~~l~hRGpd~~~~~~----------------------------~-------rl~i~~~-~~~~~QP~~~~~~~ 70 (249)
.....|+.+|.|||+|+..+.. | |++..+. +..+.|||. .+
T Consensus 15 ~~~~~~L~~lqhRG~ds~Gia~~d~~~~~~~k~~glv~~v~~~~~l~~l~g~~~IgHvR~aT~G~~~~~n~QPf~---~~ 91 (442)
T TIGR01134 15 SLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDERHLERLKGNVGIGHVRYSTAGSSSLSNAQPFV---VN 91 (442)
T ss_pred HHHHHHHHHHHhhCccceEEEEEeCCEEEEEEcCCchhhhcchhhhhcccCcEEEEEEEecCCCCCCccCCCCEE---Ee
Confidence 3466899999999999843221 1 2332222 124679983 12
Q ss_pred cCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCC-C--ChHHHHhhhccceeEEEEEeCCCCEE
Q 025673 71 VVDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRG-P--YPADQVVRDIQGKFAFILYDSSSKNA 143 (249)
Q Consensus 71 ~~~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G-~--~~~~~~l~~L~G~FAf~i~D~~~~~l 143 (249)
..++++++|||+|+|+++|+++|.. |.+.+|+|+|+++|.++...+ . .++.+++++|+|+|||+++|. ++|
T Consensus 92 ~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~falvi~~~--~~L 169 (442)
T TIGR01134 92 SPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEEDDLFEAIARVLKRVRGAYALVIMIG--DGL 169 (442)
T ss_pred CCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhcccCCHHHHHHHHHHHhCccceEEEEEC--CEE
Confidence 3345999999999999999999853 789999999999998732111 1 234678999999999999974 789
Q ss_pred EEEEeCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEE-EeCCeeEE
Q 025673 144 FLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFF-TSSGGLRS 199 (249)
Q Consensus 144 ~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~~~gi~~ 199 (249)
+++||++|+|||||+.. ++.++||||.++|.....+.+++|+||+++ +++++++.
T Consensus 170 ~a~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~g~~~~r~v~pGeiv~i~~~~~~~ 225 (442)
T TIGR01134 170 IAVRDPHGIRPLVLGKR-GDGYVVASESCALDILGAEFIRDVEPGEAVVIDDGGLES 225 (442)
T ss_pred EEEECCCCCCCcEEEEe-CCEEEEEeCchHhcccCCcEEEEECCCeEEEEECCcEEE
Confidence 99999999999999988 467999999999986555679999999998 56677655
No 33
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.93 E-value=3.1e-25 Score=190.32 Aligned_cols=158 Identities=17% Similarity=0.263 Sum_probs=125.4
Q ss_pred HHHHHHHHhcCCCccceec-----------------------------------cceeEEec-cCCCCCCCcCcccccCC
Q 025673 30 GLLANHFSSVHPGSVTVNL-----------------------------------GSSGVIAY-SLNRQNPLLPRLFAVVD 73 (249)
Q Consensus 30 ~~m~~~l~hRGpd~~~~~~-----------------------------------~rl~i~~~-~~~~~QP~~~~~~~~~~ 73 (249)
..|+..+.|||||+..+.+ .|++..+. +..+.|||. ...+
T Consensus 21 ~~~~~~~~~rg~dg~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~R~at~g~~~~~n~hPf~----~~~~ 96 (220)
T cd00352 21 LRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLATNGLPSEANAQPFR----SEDG 96 (220)
T ss_pred HHHHHhhcccCCccCCeEEECCCceEEEEeccchhhhhhhhhhhccCCCEEEEEeEeeecCCCCCCCCCCcC----cCCC
Confidence 5799999999999843221 14444332 235679983 2336
Q ss_pred cEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCCC--ChHHHHhhhccceeEEEEEeCCCCEEEEEE
Q 025673 74 DIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGP--YPADQVVRDIQGKFAFILYDSSSKNAFLAS 147 (249)
Q Consensus 74 ~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G~--~~~~~~l~~L~G~FAf~i~D~~~~~l~~aR 147 (249)
+++++|||+|+|+++|++.|.. +.+.+|+|+++++|.++.+.+. ..+.+++++++|.|+|+++|...++++++|
T Consensus 97 ~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~d~~~~~l~~~r 176 (220)
T cd00352 97 RIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKRLDGPFAFALWDGKPDRLFAAR 176 (220)
T ss_pred CEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHHHHhccCCHHHHHHHHHHhCCccEEEEEEECCCCEEEEEE
Confidence 8999999999999999998863 6789999999999988321110 124589999999999999998889999999
Q ss_pred eCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEE
Q 025673 148 DADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFF 191 (249)
Q Consensus 148 D~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~ 191 (249)
|++|.+||||+...++.++||||..++...+.+.+.+++||+++
T Consensus 177 d~~G~~pL~~~~~~~~~~~~aSe~~~~~~~~~~~~~~l~~g~~~ 220 (220)
T cd00352 177 DRFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220 (220)
T ss_pred CCCCCCCeEEEEeCCCeEEEEecHHHHhhcCcccEEECCCCCCC
Confidence 99999999999983467999999999987664569999999874
No 34
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.93 E-value=8.4e-25 Score=217.05 Aligned_cols=134 Identities=13% Similarity=0.221 Sum_probs=111.8
Q ss_pred CCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCCC---ChHHHHhhhcccee
Q 025673 59 NRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGP---YPADQVVRDIQGKF 131 (249)
Q Consensus 59 ~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G~---~~~~~~l~~L~G~F 131 (249)
.+.||+. +.+++++++|||+|||+.+||++|.. |.+.+|+|+|+++|....++|. .++.+++++|+|+|
T Consensus 113 ~n~qP~~----~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~li~~~~~~g~~~~~a~~~~~~~l~G~~ 188 (640)
T PTZ00295 113 ENAHPHC----DYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQGEDFQEAVKSAISRLQGTW 188 (640)
T ss_pred CCCCCCC----CCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhc
Confidence 4679983 44678999999999999999999853 8899999999999975433442 24567899999999
Q ss_pred EEEEEeCC-CCEEEEEEeCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEE-EeCCeeEEee
Q 025673 132 AFILYDSS-SKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFF-TSSGGLRSFE 201 (249)
Q Consensus 132 Af~i~D~~-~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~~~gi~~y~ 201 (249)
||++||+. .++|+++||+ |||||+.. ++.++||||.++|...+.+ +..|+||+++ +++++++.|.
T Consensus 189 a~~~~~~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~-~~~l~pGei~~i~~~~~~~~~ 255 (640)
T PTZ00295 189 GLCIIHKDNPDSLIVARNG---SPLLVGIG-DDSIYVASEPSAFAKYTNE-YISLKDGEIAELSLENVNDLY 255 (640)
T ss_pred eEEEEEeCCCCEEEEEECC---CceEEEEc-CceEEEEechHHHHhhCcE-EEEeCCCeEEEEECCeEEEEe
Confidence 99999976 4899999996 99999997 4579999999999887764 6679999998 5677877766
No 35
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.90 E-value=3.6e-23 Score=167.41 Aligned_cols=114 Identities=21% Similarity=0.414 Sum_probs=98.7
Q ss_pred ceeccceeEEecc-CCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCCCCh
Q 025673 45 TVNLGSSGVIAYS-LNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGPYP 119 (249)
Q Consensus 45 ~~~~~rl~i~~~~-~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G~~~ 119 (249)
.+++.|++..+.. ..+.||| .+.+++++++|||+|+|+.+|+++|.. +.+.+|+|+|++++++ +|
T Consensus 15 ~lgH~R~AT~G~~~~~~~hPf----~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~li~~---~g--- 84 (133)
T PF13522_consen 15 ALGHTRYATVGSPTEENNHPF----SNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAALIHR---WG--- 84 (133)
T ss_pred EEEEeecCCCCCCCCcCCCCC----cCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHHHHH---HH---
Confidence 3555588877665 3455999 356888999999999999999999875 7889999999999977 44
Q ss_pred HHHHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEec
Q 025673 120 ADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDD 170 (249)
Q Consensus 120 ~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe 170 (249)
.++++.|+|+|+|++||...++++++||++|.+||||+.. ++.++||||
T Consensus 85 -~~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~~-~~~~~~ASE 133 (133)
T PF13522_consen 85 -EEALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGRD-GDGYVFASE 133 (133)
T ss_pred -HHHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEEc-CCEEEEEeC
Confidence 3889999999999999988899999999999999999998 578999998
No 36
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.90 E-value=1.7e-22 Score=189.40 Aligned_cols=182 Identities=15% Similarity=0.208 Sum_probs=133.2
Q ss_pred CCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHh-CCC-ChHHHHhhhccceeE
Q 025673 59 NRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRD-RGP-YPADQVVRDIQGKFA 132 (249)
Q Consensus 59 ~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~-~G~-~~~~~~l~~L~G~FA 132 (249)
.+.|||.. .+.++.++++|||+|.|..+||++|.. |.+++|+|+|++++.+... .+. .++..+++.++|.||
T Consensus 89 ~naQP~~~--~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~~~~~~a~~~~~~~v~G~ys 166 (470)
T COG0034 89 ENAQPFYV--NSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDEDDIFEAVKEVLRRVKGAYA 166 (470)
T ss_pred ccccceEE--ecCCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHHHHhhcccccHHHHHHHHHhhcCCcEE
Confidence 34599843 223567999999999999999999975 8899999999999976321 111 235678899999999
Q ss_pred EEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEEE--e-CCeeEEee--cCCC-C
Q 025673 133 FILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFFT--S-SGGLRSFE--HPMN-E 206 (249)
Q Consensus 133 f~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~~--~-~~gi~~y~--~p~~-~ 206 (249)
++++.. ++|+++|||.|+|||.+|..++|.++||||.+||...+.+.+++++||+.++ . +.|++.+. .+.. .
T Consensus 167 ~v~~~~--~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v~i~~~~~g~~s~~~~~~~~~~ 244 (470)
T COG0034 167 LVALIK--DGLIAVRDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVIITIDGDGLESKQVAEPPRRA 244 (470)
T ss_pred EEEEEC--CeEEEEECCCCCccceeeecCCCCEEEEechhhhhcccceEEEecCCceEEEEEecCceeEEEeccCCCCCc
Confidence 999986 5999999999999999999866669999999999988888899999999984 3 33454332 2211 1
Q ss_pred CCC-----CCCCCChh---------hhhcceeceeeccccc--CCCCCCCcccc
Q 025673 207 LKP-----VPRVDSSG---------QVCGSTFKVDAETKKE--TGMPRVGSAAN 244 (249)
Q Consensus 207 ~~~-----~~~~d~~~---------~~~~~~f~~~~~~~~~--~~~p~~~~~~~ 244 (249)
.-. ..|.||.= ...|..+..++....+ .+||..|-+|+
T Consensus 245 ~C~fEyVYFARPDS~Idg~sVy~~R~~mG~~La~e~~~eaDvVipVPDSg~~aA 298 (470)
T COG0034 245 PCSFEYVYFARPDSVIDGISVYEARKRMGEKLAEEIPVEADVVIPVPDSGRPAA 298 (470)
T ss_pred cceEEEEEeecCccccCCeeHHHHHHHHHHHHHHhCCccccEEEecCCCChHHH
Confidence 111 11666521 1355555555555554 56888876654
No 37
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.89 E-value=1.6e-22 Score=185.36 Aligned_cols=182 Identities=15% Similarity=0.247 Sum_probs=140.7
Q ss_pred CCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHH-----HhCC-CC--hHHHHhhh
Q 025673 59 NRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTL-----RDRG-PY--PADQVVRD 126 (249)
Q Consensus 59 ~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~-----~~~G-~~--~~~~~l~~ 126 (249)
.+.|||.. .+..|.+++.|||++.|+++||+++.. +.|.||+|+|++++..- +..+ +| .+..+.+.
T Consensus 86 ~n~QPFvv--~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~~~d~~~ri~~~~~~ 163 (474)
T KOG0572|consen 86 SNVQPFVV--NTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVDAPDWFARIRDVMEL 163 (474)
T ss_pred ccccceEe--eccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhhhcccCccHHHHHHHHHHh
Confidence 45699953 345777999999999999999999864 89999999999999541 1112 12 25678999
Q ss_pred ccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCC----eEEEEecchhhhhccCCceEEecCCeEE-EeCCeeEEee
Q 025673 127 IQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEG----HLVLSDDVEIVKKGCGKSFAPFPKACFF-TSSGGLRSFE 201 (249)
Q Consensus 127 L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg----~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~~~gi~~y~ 201 (249)
++|.||++++.. ++||+.|||+|.|||++|+..+. .++||||.++|+....+..+++.||+++ ++.+|.+.-|
T Consensus 164 ~~g~Yslv~m~~--d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PGEiV~i~r~g~~s~~ 241 (474)
T KOG0572|consen 164 LPGAYSLVFMTA--DKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPGEIVEISRNGVKSVD 241 (474)
T ss_pred cCCceeEEEEEc--cEEEEEecCCCCccceEeeecCCCCcceEEEEecceeeeecccEEEEeecCceEEEEecCCceeee
Confidence 999999999975 67999999999999999986533 7999999999998878889999999998 5666654444
Q ss_pred c---CCCC-CCC-------CCCCCCh---------hhhhcceeceeeccccc--CCCCCCCcccc
Q 025673 202 H---PMNE-LKP-------VPRVDSS---------GQVCGSTFKVDAETKKE--TGMPRVGSAAN 244 (249)
Q Consensus 202 ~---p~~~-~~~-------~~~~d~~---------~~~~~~~f~~~~~~~~~--~~~p~~~~~~~ 244 (249)
- |... .+. ..|.||. ...||+.++.+++.+.+ +.||.+|..|+
T Consensus 242 ~~~~~~~~~~~~cIFEyvYFArpdSi~eG~sVY~~R~~~G~~LA~e~P~d~DvVi~VPdS~~~aA 306 (474)
T KOG0572|consen 242 IMKRPDENRMAFCIFEYVYFARPDSIFEGQSVYTVRLQCGEQLATEAPVDADVVIPVPDSGTTAA 306 (474)
T ss_pred eecCCccccccceeeeEEEeccCCceecccchHHHHHHHHhHhhhcCCcccceEEecCCchhHHH
Confidence 2 2211 111 1155652 23599999999998887 88999998775
No 38
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.84 E-value=2.4e-20 Score=186.01 Aligned_cols=149 Identities=14% Similarity=0.131 Sum_probs=118.8
Q ss_pred cceeccceeEEecc-CCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHH-hCCC
Q 025673 44 VTVNLGSSGVIAYS-LNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLR-DRGP 117 (249)
Q Consensus 44 ~~~~~~rl~i~~~~-~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~-~~G~ 117 (249)
..+++.|+++.+.. ..+.||+. +.+++++++|||+|||+.+||++|.. |.+.+|+|+|+|+++.+. ++|.
T Consensus 99 ~~igH~R~at~g~~~~~n~qP~~----~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEvi~~li~~~~~~~g~ 174 (670)
T PTZ00394 99 VGIAHTRWATHGGVCERNCHPQQ----SNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVISVLSEYLYTRKGI 174 (670)
T ss_pred EEEEEeeceecCCCCcCCCCCcC----CCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHHHHHHHHHHHHhcCC
Confidence 34566699988863 45779983 45788999999999999999999963 899999999998875432 2452
Q ss_pred ----ChHHHHhhhccceeEEEEEeC-CCCEEEEEEeCCCCccEEEEEecC--------------------CeEEEEecch
Q 025673 118 ----YPADQVVRDIQGKFAFILYDS-SSKNAFLASDADGSVPFFWGTDSE--------------------GHLVLSDDVE 172 (249)
Q Consensus 118 ----~~~~~~l~~L~G~FAf~i~D~-~~~~l~~aRD~~G~rPLyy~~~~d--------------------g~~~fASe~~ 172 (249)
.++.+++++|+|+|||++.+. ..++|+++||+ +||++|..++ +.++|||+..
T Consensus 175 ~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSd~~ 251 (670)
T PTZ00394 175 HNFADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKLQTYDLTDLSGPLEVFFSSDVN 251 (670)
T ss_pred CCHHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEeccccccccccccccccccccCCCCcEEEEeChH
Confidence 245689999999999999864 34899999997 9999999742 4699999999
Q ss_pred hhhhccCCceEEecCCeEEE-eCCeeEEe
Q 025673 173 IVKKGCGKSFAPFPKACFFT-SSGGLRSF 200 (249)
Q Consensus 173 aL~~~~~~~i~~lpPG~~~~-~~~gi~~y 200 (249)
+|...+. .+..|++|+++. ++++++.|
T Consensus 252 a~~~~t~-~~~~l~dg~~~~~~~~~~~~~ 279 (670)
T PTZ00394 252 SFAEYTR-EVVFLEDGDIAHYCDGALRFY 279 (670)
T ss_pred HHHHhhc-eEEEecCCeEEEEECCEEEEE
Confidence 9988775 589999999984 45555444
No 39
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.84 E-value=4.9e-20 Score=184.13 Aligned_cols=150 Identities=13% Similarity=0.212 Sum_probs=117.8
Q ss_pred ceeccceeEEecc-CCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHH-HhCCC-
Q 025673 45 TVNLGSSGVIAYS-LNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTL-RDRGP- 117 (249)
Q Consensus 45 ~~~~~rl~i~~~~-~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~-~~~G~- 117 (249)
.+++.|+++.+.. ..+.||+.. ..++.++++|||+|+|+.+||++|.. |.+.+|+|+|+|++.+. ..+|.
T Consensus 89 ~IGH~R~at~g~~~~~n~qP~~~---~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~~~~~~ 165 (680)
T PLN02981 89 GIAHTRWATHGPPAPRNSHPQSS---GPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFDKLNEE 165 (680)
T ss_pred EEEEcccccCCCCCcCCCCCccc---CCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHHhcccc
Confidence 3555688888753 356799831 12478999999999999999999863 89999999999996442 12331
Q ss_pred -------ChHHHHhhhccceeEEEEEeCCC-CEEEEEEeCCCCccEEEEEec--C---------------------CeEE
Q 025673 118 -------YPADQVVRDIQGKFAFILYDSSS-KNAFLASDADGSVPFFWGTDS--E---------------------GHLV 166 (249)
Q Consensus 118 -------~~~~~~l~~L~G~FAf~i~D~~~-~~l~~aRD~~G~rPLyy~~~~--d---------------------g~~~ 166 (249)
.++.+++++|+|+|||+++++.. +++|++||+ +||++|..+ + +.++
T Consensus 166 ~~~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (680)
T PLN02981 166 EGDVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSEGFLTKNRDKPKEFF 242 (680)
T ss_pred cCCCCHHHHHHHHHHhccCccceEEEecCCCCeEEEEecC---CceEEEecCcccccccccccccccccccccccCCcEE
Confidence 23457899999999999999754 899999994 999999873 1 3699
Q ss_pred EEecchhhhhccCCceEEecCCeEE-EeCCeeEEee
Q 025673 167 LSDDVEIVKKGCGKSFAPFPKACFF-TSSGGLRSFE 201 (249)
Q Consensus 167 fASe~~aL~~~~~~~i~~lpPG~~~-~~~~gi~~y~ 201 (249)
||||.++|... .+.+..|+||+++ ++++|++.|-
T Consensus 243 ~aSe~~al~~~-~~~~~~l~~gei~~i~~~~~~~~~ 277 (680)
T PLN02981 243 LASDASAVVEH-TKRVLVIEDNEVVHLKDGGVGIYK 277 (680)
T ss_pred EEeCHHHHHHh-cCEEEEECCCeEEEEECCeEEEEe
Confidence 99999999887 4579999999998 5667766553
No 40
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=3.2e-17 Score=159.58 Aligned_cols=121 Identities=20% Similarity=0.319 Sum_probs=103.6
Q ss_pred CcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCCC-ChHHHHhhhccceeEEEEEeCCC-CEEEEE
Q 025673 73 DDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSS-KNAFLA 146 (249)
Q Consensus 73 ~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G~-~~~~~~l~~L~G~FAf~i~D~~~-~~l~~a 146 (249)
++++|||||.|.||.+||++|.. |.+++|||+|.|++++..+.+. .+++.++++|+|+||+++.|.+. ++|++|
T Consensus 92 ~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hLi~~~~~~~~~~a~~~~l~~l~Gsyal~~~~~~~p~~i~~a 171 (597)
T COG0449 92 GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTSLLEAVKKVLKRLEGSYALLCTHSDFPDELVAA 171 (597)
T ss_pred CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHhcceeEEEEEecCCCCeEEEE
Confidence 88999999999999999999984 9999999999999977543322 34567899999999999999876 799999
Q ss_pred EeCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEE-EeCCeeE
Q 025673 147 SDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFF-TSSGGLR 198 (249)
Q Consensus 147 RD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~~~gi~ 198 (249)
|. | .||+.|.. ++..++||+.-+++.... .+..|.+|.+. ++.+++.
T Consensus 172 r~--~-sPL~iG~g-~~e~f~aSD~~a~l~~t~-~~~~l~dgd~~~~~~~~v~ 219 (597)
T COG0449 172 RK--G-SPLVIGVG-EGENFLASDVSALLNFTR-RFVYLEEGDIAKLTTDGVS 219 (597)
T ss_pred cC--C-CCeEEEec-CCcceEecChhhhhhhhc-eEEEeCCCCEEEEECCcEE
Confidence 96 5 99999998 567999999999988765 47889999997 5666665
No 41
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.65 E-value=1.9e-15 Score=142.46 Aligned_cols=114 Identities=14% Similarity=0.171 Sum_probs=90.3
Q ss_pred EEEEEEEEcchHHHHHHhcC---------------------CCCCCHHHHHHHHHHHHHhCCC---ChHH----------
Q 025673 76 FCLFQGHIENVALLKQQYGL---------------------NKTANEVIIVIEAYRTLRDRGP---YPAD---------- 121 (249)
Q Consensus 76 ~lv~NGeI~N~~eL~~~L~~---------------------~~~~sD~Evil~ly~~~~~~G~---~~~~---------- 121 (249)
.++|||||.|+..+++.+.. ..+.||+|++.++++.+...|. .++.
T Consensus 226 ~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~~ld~~le~l~~~g~~l~~A~~mliPeaw~~~ 305 (413)
T cd00713 226 YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSASLDNVLELLVRSGRSLPEAMMMLIPEAWQNN 305 (413)
T ss_pred eEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHhCChhhccC
Confidence 49999999999988876632 2368999999999976543332 1111
Q ss_pred ---------------HHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecchhhhhccCCceE---
Q 025673 122 ---------------QVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFA--- 183 (249)
Q Consensus 122 ---------------~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~--- 183 (249)
.+++.++|.||+++.|. +.++++|||+|.|||+|+.++++.++||||..++.. ..+.|.
T Consensus 306 ~~m~~~~r~fYey~~~~me~~dGp~aiv~~dg--~~i~a~rDrnGlRPl~~~~t~d~~~v~ASE~gal~~-~~~~V~~kg 382 (413)
T cd00713 306 PTMDPELRAFYEYHSSLMEPWDGPAAIAFTDG--RQVGASLDRNGLRPARYVITKDGLLIMSSEVGVVDV-PPEKVVEKG 382 (413)
T ss_pred ccCCHHHHHHHHHHHHHhccCCCcEEEEEEeC--CEEEEEeCCCCCcceEEEEECCCEEEEEeCCcccCC-CcceeeecC
Confidence 34577999999999885 789999999999999999886667999999999965 334565
Q ss_pred EecCCeEEE
Q 025673 184 PFPKACFFT 192 (249)
Q Consensus 184 ~lpPG~~~~ 192 (249)
+|.||+++.
T Consensus 383 ~l~PGe~v~ 391 (413)
T cd00713 383 RLGPGEMLL 391 (413)
T ss_pred CCCCCeEEE
Confidence 899999984
No 42
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.59 E-value=1.4e-14 Score=129.07 Aligned_cols=133 Identities=13% Similarity=0.236 Sum_probs=102.4
Q ss_pred eccceeEEe-ccCCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC-----CCCCCHHHHHHHHHHHHH-hCCC--
Q 025673 47 NLGSSGVIA-YSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL-----NKTANEVIIVIEAYRTLR-DRGP-- 117 (249)
Q Consensus 47 ~~~rl~i~~-~~~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~-----~~~~sD~Evil~ly~~~~-~~G~-- 117 (249)
++-|.+..+ .+..+.|||. .++++++|||.|.|+++|+..+.. +.+.+|+|++++++.+.. +.+.
T Consensus 85 ~H~R~At~G~~~~~n~hPf~------~~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~~~~ 158 (257)
T cd01908 85 AHVRAATVGPVSLENCHPFT------RGRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERDPLD 158 (257)
T ss_pred EEEecCCCCCCccccCCCcc------cCCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcCCcc
Confidence 333555444 2345678983 348999999999999999988753 688999999999996532 2111
Q ss_pred -----ChHHHHhhhcc-----ceeEEEEEeCCCCEEEEEEeCCCCccEEEEEec-----------------CCeEEEEec
Q 025673 118 -----YPADQVVRDIQ-----GKFAFILYDSSSKNAFLASDADGSVPFFWGTDS-----------------EGHLVLSDD 170 (249)
Q Consensus 118 -----~~~~~~l~~L~-----G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~-----------------dg~~~fASe 170 (249)
.++.++++.|+ |.|+|++.|. ++|+++||+. .+||||+... ++.++||||
T Consensus 159 ~~~~~~al~~~~~~l~~~~~~~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vvaSE 235 (257)
T cd01908 159 PAELLDAILQTLRELAALAPPGRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVASE 235 (257)
T ss_pred hHHHHHHHHHHHHHHHHhCcCeEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEEEeC
Confidence 24567888888 7889888875 7899999988 8999999864 357999999
Q ss_pred chhhhhccCCceEEecCCeEEE
Q 025673 171 VEIVKKGCGKSFAPFPKACFFT 192 (249)
Q Consensus 171 ~~aL~~~~~~~i~~lpPG~~~~ 192 (249)
..+... .++++|||+++.
T Consensus 236 ~l~~~~----~w~~v~~ge~~~ 253 (257)
T cd01908 236 PLTDDE----GWTEVPPGELVV 253 (257)
T ss_pred CCCCCC----CceEeCCCEEEE
Confidence 887643 589999999984
No 43
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.57 E-value=3.7e-14 Score=126.38 Aligned_cols=137 Identities=11% Similarity=0.199 Sum_probs=99.9
Q ss_pred eeccceeEEe--ccCCCCCCCcCcccccCCcEEEEEEEEEcchH-----HHHHHhc-----CCCCCCHHHHHHHHHHHHH
Q 025673 46 VNLGSSGVIA--YSLNRQNPLLPRLFAVVDDIFCLFQGHIENVA-----LLKQQYG-----LNKTANEVIIVIEAYRTLR 113 (249)
Q Consensus 46 ~~~~rl~i~~--~~~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~-----eL~~~L~-----~~~~~sD~Evil~ly~~~~ 113 (249)
+++-|.+-.+ .+..+.|||. .++++++|||.|.|++ +|+++|. .+.+.+|+|++.+++.+..
T Consensus 86 i~HvR~AT~G~~~~~~N~hPf~------~g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~li~~~~ 159 (251)
T TIGR03442 86 LAAVRSATVGMAIDESACAPFS------DGRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALLLNRL 159 (251)
T ss_pred EEEeeeCCCCCCcchhcCCCCC------cCCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHHHHHHH
Confidence 3333655443 2335789992 4789999999999997 5666653 2678999999999996532
Q ss_pred -hCCC----ChHHHHhhhccce-------eEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecchhhhhccCCc
Q 025673 114 -DRGP----YPADQVVRDIQGK-------FAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKS 181 (249)
Q Consensus 114 -~~G~----~~~~~~l~~L~G~-------FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~ 181 (249)
+..+ ..+.++++.|.|. |+|++.|. ++||+.||+. ||||+..+ +.++||||. |.. ...
T Consensus 160 ~~~~~~~~~~ai~~~~~~l~~~~~~~~~~~n~~~sdg--~~l~a~R~~~---~L~~~~~~-~~~vvASEp--l~~--~~~ 229 (251)
T TIGR03442 160 LENDPRALEEALAEVLLILFSAAAAPRVRLNLLLTDG--SRLVATRWAD---TLYWLKDP-EGVIVASEP--YDD--DPG 229 (251)
T ss_pred hhcCCchHHHHHHHHHHHHHHHhhCcccceEEEEEcC--CEEEEEEeCC---eEEEEEcC-CEEEEEeCC--cCC--CCC
Confidence 2111 2345677888888 99999985 7999999976 99999874 579999998 211 127
Q ss_pred eEEecCCeEE-EeCCeeE
Q 025673 182 FAPFPKACFF-TSSGGLR 198 (249)
Q Consensus 182 i~~lpPG~~~-~~~~gi~ 198 (249)
++++|||+++ +.+++++
T Consensus 230 W~~v~pge~v~i~~~~v~ 247 (251)
T TIGR03442 230 WQDVPDRHLLSVSEDDVT 247 (251)
T ss_pred ceEeCCCeEEEEECCcEE
Confidence 9999999998 4555544
No 44
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=99.43 E-value=1.3e-12 Score=122.63 Aligned_cols=140 Identities=23% Similarity=0.352 Sum_probs=101.3
Q ss_pred HHHHHHHHHhcCCCccc----------eeccc--eeEEeccCCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcCC
Q 025673 29 NGLLANHFSSVHPGSVT----------VNLGS--SGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLN 96 (249)
Q Consensus 29 ~~~m~~~l~hRGpd~~~----------~~~~r--l~i~~~~~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~~ 96 (249)
...|.-.+..||||... +.++. |.+-++ .-.||. ..+++.++.|||||||-+- .
T Consensus 20 ~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG~--~t~Qpv-----v~d~~~vfl~NGeIyn~~~-------s 85 (520)
T KOG0573|consen 20 SEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRGY--LTKQPV-----VEDDRYVFLFNGEIYNGEK-------S 85 (520)
T ss_pred hhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEeee--eccCce-----ecccceEEEecceeccCCC-------c
Confidence 45677889999999842 11111 222232 336886 3566699999999999642 3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecchhhhh
Q 025673 97 KTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKK 176 (249)
Q Consensus 97 ~~~sD~Evil~ly~~~~~~G~~~~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~ 176 (249)
.+..|+.+|++....+.+.| .+.+.++.++|.|||++||.+.++||++||++|+|.|.|+....+..+++|....
T Consensus 86 ~~~~d~~~l~~~l~~~~e~~--~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~~GRrSLly~~~~~~f~~~~st~g~--- 160 (520)
T KOG0573|consen 86 DTLFDTDILAEELSNLKESG--DILDIIKSLQGPWAFIYYDVRSDKLYFGRDDIGRRSLLYSLDPFNFSLVLSTVGT--- 160 (520)
T ss_pred cccchHHHHHHHHhcCCccc--cHHHHHHhccCCceEEEEEccCcEEEEecccccceeeeEEeccCceeEEeecccc---
Confidence 56679999999887653333 3668899999999999999999999999999999999999986553333343221
Q ss_pred ccCCceEEecCC
Q 025673 177 GCGKSFAPFPKA 188 (249)
Q Consensus 177 ~~~~~i~~lpPG 188 (249)
..+.|+++||+
T Consensus 161 -~~~~i~e~~~~ 171 (520)
T KOG0573|consen 161 -SGKLIYEVPPV 171 (520)
T ss_pred -CCccccccCch
Confidence 22457799999
No 45
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.32 E-value=9.4e-12 Score=116.26 Aligned_cols=94 Identities=17% Similarity=0.222 Sum_probs=69.2
Q ss_pred EEEEEEEEcchHHHHHHhcC----CCC----------------CCHHHHHHHHHHHHHhCCC------------------
Q 025673 76 FCLFQGHIENVALLKQQYGL----NKT----------------ANEVIIVIEAYRTLRDRGP------------------ 117 (249)
Q Consensus 76 ~lv~NGeI~N~~eL~~~L~~----~~~----------------~sD~Evil~ly~~~~~~G~------------------ 117 (249)
+++|||||.|+..+++.+.. +.+ .||+|++.++++.+...|.
T Consensus 220 ~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS~~l~~~le~l~~~g~~l~~a~~~l~p~~~~~~~ 299 (361)
T PF00310_consen 220 ALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDSEVLDNLLELLLRRGRSLEEAMMMLIPPAWENDE 299 (361)
T ss_dssp EEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HHHHHHHHHHHHHHTTSSHHHHHHHHSGG--TTSC
T ss_pred HhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHhhCCcccccCc
Confidence 89999999999999988753 344 8999999999876544440
Q ss_pred ----------ChHHHHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecc
Q 025673 118 ----------YPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDV 171 (249)
Q Consensus 118 ----------~~~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~ 171 (249)
.....+++.++|.|++++.|. +.++++|||.|.||+.|+.++|+.+++|||.
T Consensus 300 ~~~~~~~~~y~~~~~~~~~~dGPaai~~~~g--~~~~a~~Dr~GLRP~~~~~~~d~~~v~aSE~ 361 (361)
T PF00310_consen 300 DMSPEKRAFYEYHASLMEPWDGPAAIIFTDG--NGVGAFLDRNGLRPLRYGITEDGLVVLASEA 361 (361)
T ss_dssp CSTHHHHHHHHHHHHHHCC--CCEEEEEECS--SEEEEEE-TT--S--EEEEETTCEEEEESST
T ss_pred cCCHHHHHHHHHHHHhhccCCCceEEEEEeC--CEEEEEECCCCCcceEEEEECCCEEEEEeCC
Confidence 012345778999999999975 5799999999999999999977789999994
No 46
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.03 E-value=2.8e-09 Score=112.70 Aligned_cols=115 Identities=14% Similarity=0.148 Sum_probs=83.4
Q ss_pred EEEEEEEEcchHHHHHHhc-------C-------------CCCCCHHHHHHHHHHHHHhCCC-------------Ch---
Q 025673 76 FCLFQGHIENVALLKQQYG-------L-------------NKTANEVIIVIEAYRTLRDRGP-------------YP--- 119 (249)
Q Consensus 76 ~lv~NGeI~N~~eL~~~L~-------~-------------~~~~sD~Evil~ly~~~~~~G~-------------~~--- 119 (249)
.++|||||--+..-++.+. . ....||++.+-..++-+...|. |.
T Consensus 237 ~laHNGEINTi~gN~nwm~are~~l~s~~~~~~~~~~Pii~~~~SDSa~lDn~lElL~~~G~sl~~A~~mliPeaW~~~~ 316 (1485)
T PRK11750 237 YLAHNGEINTITGNRQWARARAYKFQTPLIPDLQEAAPFVNETGSDSSSLDNMLELLLAGGMDLFRAMRLLVPPAWQNNP 316 (1485)
T ss_pred eeeeccccccHHHHHHHHHHHHHhccCCCcchHHhhCCcCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHhCCcccccCC
Confidence 4799999974432221111 0 2457899988777765433431 10
Q ss_pred -----HHH-------HhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecchhhhhccCCceE--Ee
Q 025673 120 -----ADQ-------VVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFA--PF 185 (249)
Q Consensus 120 -----~~~-------~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~--~l 185 (249)
.++ +++-++|.||+++.|. +.+++.|||+|.|||.|+..+|+.+++|||..++.....+.++ +|
T Consensus 317 ~m~~~~r~fYeY~s~lmEpwdGpaaiv~~~g--~~i~A~~DrnGlRPlr~~~~~d~~~i~aSE~g~ldi~~~~vvrkg~l 394 (1485)
T PRK11750 317 DMDPDLRAFYEFNSMHMEPWDGPAGIVMTDG--RYAACNLDRNGLRPARYVITKDKLITLASEVGIWDYQPDEVVEKGRV 394 (1485)
T ss_pred CCCHHHHHHHHHHHhhcccCCCCEEEEEEeC--CEEEEecCCCCCccceEEEEcCCEEEEEecceeeecccceeEEeccc
Confidence 111 3445699999999985 8999999999999999998877779999999998765555566 89
Q ss_pred cCCeEEE
Q 025673 186 PKACFFT 192 (249)
Q Consensus 186 pPG~~~~ 192 (249)
.||+++.
T Consensus 395 ~PGemi~ 401 (1485)
T PRK11750 395 GPGELLV 401 (1485)
T ss_pred CCCeEEE
Confidence 9999983
No 47
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=98.80 E-value=6.4e-09 Score=99.65 Aligned_cols=128 Identities=16% Similarity=0.230 Sum_probs=86.0
Q ss_pred cccHHHHHHHHHhcCCCcc-------ceeccceeEEec-cCCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC--
Q 025673 26 ALKNGLLANHFSSVHPGSV-------TVNLGSSGVIAY-SLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL-- 95 (249)
Q Consensus 26 ~~~~~~m~~~l~hRGpd~~-------~~~~~rl~i~~~-~~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~-- 95 (249)
+.|++.+.+.+..-+.|-. .+.+.|++.-+. +..+.-|.. .+..+.++++|||.|.||++|+..|..
T Consensus 56 ~GkVkaL~e~i~~q~~~l~~~f~sH~gIAHTRWATHGvPs~~NsHP~r---Sd~~n~FvVVHNGIITNyk~lK~~L~~kG 132 (670)
T KOG1268|consen 56 TGKVSSLKEEINNQNLNLDEKFISHCGIAHTRWATHGVPSEVNCHPHR---SDPSNEFVVVHNGIITNFKELKALLEKKG 132 (670)
T ss_pred cCceeehhHHHhhcCcccceeeeeeeeeeeeehhhcCCCCccCCCCCc---CCCCCcEEEEEcCeeccHHHHHHHHHhcC
Confidence 3444555555555544431 233446654332 222334552 345678999999999999999999875
Q ss_pred --CCCCCHHHHHHHHHHHHHhCCC--Ch----HHHHhhhccceeEEEEEeCC-CCEEEEEEeCCCCccEEEEE
Q 025673 96 --NKTANEVIIVIEAYRTLRDRGP--YP----ADQVVRDIQGKFAFILYDSS-SKNAFLASDADGSVPFFWGT 159 (249)
Q Consensus 96 --~~~~sD~Evil~ly~~~~~~G~--~~----~~~~l~~L~G~FAf~i~D~~-~~~l~~aRD~~G~rPLyy~~ 159 (249)
|.+++|+|.|++++....+.-+ .. .+.++++|+|.|++++-... .+++.+.|+ | .||..|.
T Consensus 133 ~~FESdTDTEciaKL~~~~~D~~~~~~~F~~lv~~v~k~lEGaFalvfkS~hfP~e~Va~Rr--g-SPlliGv 202 (670)
T KOG1268|consen 133 YVFESDTDTECIAKLYKHIYDTSPEDLDFHVLVELVLKELEGAFGLLFKSSHFPGEVVAARK--G-SPLLIGV 202 (670)
T ss_pred ceeecccchHHHHHHHHHHHhhCCCcccHHHHHHHHHHHhhhHHHHHHHhhcCCcceeeecc--C-Ccceeee
Confidence 8999999999999976544321 11 45689999999999986543 378999998 5 6676654
No 48
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=98.17 E-value=1.3e-05 Score=72.45 Aligned_cols=131 Identities=17% Similarity=0.255 Sum_probs=63.7
Q ss_pred CCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcCCCCCCHHHHHHHHHHH-HHhCC---CCh-------HHHHhhh
Q 025673 58 LNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRT-LRDRG---PYP-------ADQVVRD 126 (249)
Q Consensus 58 ~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~~~~~sD~Evil~ly~~-~~~~G---~~~-------~~~~l~~ 126 (249)
..+.+||... ..+++.+.+|||.|.+++.++...-.....+|+|.+..++-. +.+.+ ... +.+.++.
T Consensus 88 ~~N~HPF~~~--~~g~~w~FaHNG~i~~f~~~~~~~~~~~G~TDSE~~F~lll~~l~~~~~~~~~~~~~~~~~l~~~~~~ 165 (271)
T PF13230_consen 88 LENCHPFSRE--LWGRRWLFAHNGTIPGFEDILDDRYQPVGTTDSEHAFCLLLDQLRDRGPDAPPALEELFEALRELAKE 165 (271)
T ss_dssp ---SS-EE------ETTEEEEEEEEETTGGGGHHHHHT--S--HHHHHHHHHHHTTTTT-HH--HHHHHHHHHHHHHHHS
T ss_pred cccCCCceec--cCCCcEEEEeCCccccccccCccccccCCCcHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHH
Confidence 4567899311 124679999999999987665222125688999999988743 22222 101 1233444
Q ss_pred c--cceeEEEEEeCCCCEEEEEEeC----CCCccEE-------------EE---EecCCeEEEEecchhhhhccCCceEE
Q 025673 127 I--QGKFAFILYDSSSKNAFLASDA----DGSVPFF-------------WG---TDSEGHLVLSDDVEIVKKGCGKSFAP 184 (249)
Q Consensus 127 L--~G~FAf~i~D~~~~~l~~aRD~----~G~rPLy-------------y~---~~~dg~~~fASe~~aL~~~~~~~i~~ 184 (249)
+ .|.++|++-|. +.|++.|+. .-+++.+ +. ...+..++||||.-. ..+...+
T Consensus 166 ~~~~~~~N~~lsDG--~~l~a~~~~~l~~~~r~~p~~~~~l~~~~~~~~~~~~~~~~~~~~vVaSePLt----~~e~W~~ 239 (271)
T PF13230_consen 166 INEYGSLNFLLSDG--ERLFAHRYTSLYYLTRRPPFGKARLFDEDYEVDFSEVTDPDDRAVVVASEPLT----DDEDWEP 239 (271)
T ss_dssp -SSSEEEEEEEE-S--S-EEEEEEESSS----------------------EEEEETTTTEEEEESS--------SS--EE
T ss_pred hccCeeEEEEEECC--ceEEEEEcCCeeEEeccccccccccccchhhhhhhhccCCCCCEEEEEeccCC----CCCCeEE
Confidence 4 37889999885 789999982 1122211 00 112346788888433 1235999
Q ss_pred ecCCeEEEeCCe
Q 025673 185 FPKACFFTSSGG 196 (249)
Q Consensus 185 lpPG~~~~~~~g 196 (249)
+|+|+++..++|
T Consensus 240 vp~g~~l~~~~G 251 (271)
T PF13230_consen 240 VPPGSLLVFRDG 251 (271)
T ss_dssp --SSEEEE----
T ss_pred cCCCcEEEEecc
Confidence 999999965555
No 49
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=97.98 E-value=9e-05 Score=62.61 Aligned_cols=111 Identities=15% Similarity=0.247 Sum_probs=74.5
Q ss_pred cCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCCCChHHHHhhhccceeEEEEEeCCCCEEEEE
Q 025673 71 VVDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLA 146 (249)
Q Consensus 71 ~~~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G~~~~~~~l~~L~G~FAf~i~D~~~~~l~~a 146 (249)
...+-..-.-|.|||+.-|+.-.+. ...-+|+|++..+|.+ -|. .++.--+|+|+|.|=|+ +++|.+.
T Consensus 45 ~~~~~tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~~---lG~----~aLsLAEGdfcffiE~k-ng~L~l~ 116 (201)
T PF09147_consen 45 RFERGTAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFTR---LGN----SALSLAEGDFCFFIEDK-NGELTLI 116 (201)
T ss_dssp EETTEEEEEES--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHHH---H-G----GGGGG--SSEEEEEEET-TSEEEEE
T ss_pred EecCccEEEEEEeccHHHHHHhhheeeccceeeccHHHHHHHHHH---hhh----hhhhhhcCceEEEEecC-CCcEEEE
Confidence 3445566667999999888766654 3467999999999988 342 67888899999999885 6999999
Q ss_pred EeCCCCccEEEEEecCCeEEEEecchhhhh-------------------------ccCCceEEecCCeEE
Q 025673 147 SDADGSVPFFWGTDSEGHLVLSDDVEIVKK-------------------------GCGKSFAPFPKACFF 191 (249)
Q Consensus 147 RD~~G~rPLyy~~~~dg~~~fASe~~aL~~-------------------------~~~~~i~~lpPG~~~ 191 (249)
.|+-|..|.|.-... ..++...+|-.-. ..-+.+.++.||.+-
T Consensus 117 Tds~G~~pv~lV~~~--~~WiTn~LK~V~~~eg~~a~df~~E~~v~q~~l~~d~~sPi~na~RlkPGsin 184 (201)
T PF09147_consen 117 TDSRGFNPVYLVQSK--FIWITNSLKLVSAVEGEGAFDFMPESLVIQSSLRPDNFSPIKNAQRLKPGSIN 184 (201)
T ss_dssp E-SSSSS-EEEEESS--SEEEES-HHHHHHHH-TTSS-B--HHHHSS-S---TT--SBTTEEEE-SSEEE
T ss_pred ecCCCCceEEEEecC--ceEEecceEEEEEeeccccccccchhHHHhhhccCCCcCccccceecCCCceE
Confidence 999999999987762 4677766654421 011478999999996
No 50
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=97.58 E-value=0.00024 Score=66.62 Aligned_cols=116 Identities=9% Similarity=0.052 Sum_probs=84.7
Q ss_pred EEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCCC--------------ChH-HHHhhhccceeEEEEE
Q 025673 76 FCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGP--------------YPA-DQVVRDIQGKFAFILY 136 (249)
Q Consensus 76 ~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G~--------------~~~-~~~l~~L~G~FAf~i~ 136 (249)
.++|||||-++...++.+.. +.+.+|+|.+.+++-.+...|. .+. ..-...|.|.||++.-
T Consensus 227 ~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~a~l~p~~~~~~sDs~~~dn~lE~l~~~G~~l~~a~~m~~P~aw~~~ 306 (371)
T COG0067 227 LLVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAKLLPILMRGGSDSASLDNALELLLLGGRDLYHAAMLLGPEAWVVG 306 (371)
T ss_pred eeeecceecccccHHHHHHHhhcccccCccHHHHHHHHHHhcccCCcchhhhHHHHHHHhcCcCchhHHHhcCchhhccC
Confidence 46999999998776666543 7899999999988853321210 000 1234567999999875
Q ss_pred eC-CCCEEEEEEeCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEEEeCCee
Q 025673 137 DS-SSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFFTSSGGL 197 (249)
Q Consensus 137 D~-~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~~~~~gi 197 (249)
.. ..+...+.+|+.+.+|.+-|-. +..+.++|+..|++..+ .|.|+.|++.+++.
T Consensus 307 ~~~~~~~~afye~~~~l~epwdGpa-~~~f~dgse~gA~ldrn-----gLrp~Ry~~t~d~~ 362 (371)
T COG0067 307 TDMDPEGRAFYEDHSALMEPWDGPA-DIVFTDGSEEGAILDRN-----GLRPARYWITKDGE 362 (371)
T ss_pred CCCCcceEEEEehhhhCCCCccCCc-ceeEEeeeeeeeeeccC-----CCCcceEEEecCCE
Confidence 42 2467889999999999999987 56899999999987544 37888888666553
No 51
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=88.11 E-value=2.7 Score=37.73 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=27.2
Q ss_pred CCCCCCCcCcccccCCcEEEEEEEEEcchHH-HHHHhcCCCCCCHHHHHH
Q 025673 58 LNRQNPLLPRLFAVVDDIFCLFQGHIENVAL-LKQQYGLNKTANEVIIVI 106 (249)
Q Consensus 58 ~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~e-L~~~L~~~~~~sD~Evil 106 (249)
.++.+||+... -+..+.++|||.|.|++. +...+. ....+|.|...
T Consensus 87 ~~ntHPF~~~~--~~~~~~FaHNG~l~~~~~~~~~~~~-~~~~tds~~~~ 133 (252)
T COG0121 87 LSNTHPFTREL--WGYIWLFAHNGQLDKFKLLEGRKLE-PVGYTDSEAAF 133 (252)
T ss_pred ccCCCCccccC--CccceEEEecCcccCcccccccccC-CCCcchHHHHH
Confidence 35567884211 234578999999999987 333332 23345555444
No 52
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=70.69 E-value=8.1 Score=36.64 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=39.2
Q ss_pred hhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecch
Q 025673 124 VRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVE 172 (249)
Q Consensus 124 l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~ 172 (249)
..-.+|.=+.++.|. ..+-+.||+.|.||-=|..++++.++++||..
T Consensus 324 ~epwdGpa~~~f~dg--se~gA~ldrngLrp~Ry~~t~d~~vv~~se~g 370 (371)
T COG0067 324 MEPWDGPADIVFTDG--SEEGAILDRNGLRPARYWITKDGEVVVASEAG 370 (371)
T ss_pred CCCccCCcceeEEee--eeeeeeeccCCCCcceEEEecCCEEEEEEecc
Confidence 344577778888885 67889999999999999888888999999964
No 53
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=41.65 E-value=46 Score=36.64 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=45.2
Q ss_pred hhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecchhhhhccCC--ceEEecCCeEE
Q 025673 124 VRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGK--SFAPFPKACFF 191 (249)
Q Consensus 124 l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~--~i~~lpPG~~~ 191 (249)
++-.+|.=-+.+-| .+.+-+.=||.|.||-=|+.+.|+.++.|||.-.+.-...+ .--+|-||-++
T Consensus 407 MEpWDGPALl~FsD--Gry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~Ml 474 (2142)
T KOG0399|consen 407 MEPWDGPALLTFSD--GRYCGAILDRNGLRPARYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMML 474 (2142)
T ss_pred CCCCCCceEEEecC--CceeeeeeccCCCcceeeEEecCCEEEEeecccccCCCHHHhhhccCcCCCeEE
Confidence 34456765555544 35677778999999998888878899999998765321110 01358899887
No 54
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=41.33 E-value=19 Score=30.15 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=16.5
Q ss_pred CcEEEEEEEEEcchHHHHH
Q 025673 73 DDIFCLFQGHIENVALLKQ 91 (249)
Q Consensus 73 ~~~~lv~NGeI~N~~eL~~ 91 (249)
+++.+||||+|-|.+.+.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (168)
T TIGR03823 33 DRISLVFRGQIINKESISR 51 (168)
T ss_pred hheeeeecceeecHHHHHH
Confidence 5799999999999988754
No 55
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=40.96 E-value=19 Score=30.10 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=16.5
Q ss_pred CcEEEEEEEEEcchHHHHH
Q 025673 73 DDIFCLFQGHIENVALLKQ 91 (249)
Q Consensus 73 ~~~~lv~NGeI~N~~eL~~ 91 (249)
+++.+||||+|-|.+.+.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (169)
T PRK11582 33 DRITLVFRGQIINKIAISR 51 (169)
T ss_pred hheeeeecceeecHHHHHH
Confidence 5799999999999988754
No 56
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=35.94 E-value=1e+02 Score=21.50 Aligned_cols=47 Identities=30% Similarity=0.526 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHhhhccceeEEEEEeCCCCEEEEEEeCCCC--ccEEE
Q 025673 100 NEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGS--VPFFW 157 (249)
Q Consensus 100 sD~Evil~ly~~~~~~G~~~~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~--rPLyy 157 (249)
.|.+-++..++.++..|. +.-.-+ +.+|...+++++..|. |+ |||+.
T Consensus 12 ~~p~~l~~~lr~~RR~g~---------i~~~vs-i~~~~~~~ei~I~tD~-GR~~RPL~v 60 (63)
T PF04566_consen 12 SDPEELVKTLRNLRRSGK---------ISKEVS-IVYDIREKEIRINTDA-GRLCRPLFV 60 (63)
T ss_dssp SSHHHHHHHHHHHHHTTS---------S-TTSE-EEEETTTTEEEEE-SS-CEEEEEEEE
T ss_pred cCHHHHHHHHHHHhhccC---------CcceeE-EEEeccCCEEEEEccC-CcccceeEE
Confidence 456666666766554542 121223 4578888999999995 53 67765
No 57
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism]
Probab=34.76 E-value=2.1e+02 Score=25.54 Aligned_cols=81 Identities=20% Similarity=0.398 Sum_probs=52.4
Q ss_pred EEEEE--EEEcchHHHHHHhcCC-CCCCHHHHHHHHHHHHHhCCCChHHHHhhhc-------cc-eeEEEEEeCCCCEEE
Q 025673 76 FCLFQ--GHIENVALLKQQYGLN-KTANEVIIVIEAYRTLRDRGPYPADQVVRDI-------QG-KFAFILYDSSSKNAF 144 (249)
Q Consensus 76 ~lv~N--GeI~N~~eL~~~L~~~-~~~sD~Evil~ly~~~~~~G~~~~~~~l~~L-------~G-~FAf~i~D~~~~~l~ 144 (249)
+..|| |.|||+.-..+.|... .+....+.++.++++ +.|. .+++++++ .| -|.+.+++++.++|+
T Consensus 92 a~~Fn~~~~~~Nh~fFw~~l~p~gg~~p~~~~L~~aI~~--~FGS--~ee~~k~~~~~~~~v~GsGW~WLv~~~~~~kL~ 167 (234)
T KOG0876|consen 92 APKFNGAGHIYNHSFFWENLAPPGGGKPEGEALLKAIDS--SFGS--LEEFVKELNAAAAAVFGSGWLWLVYNKELKKLF 167 (234)
T ss_pred hhhcCCccccccchhhhhhccCCCCCCCchHHHHHHHHH--hhcC--HHHHHHHHHHHHHhhcCCceEEEEEcCCCCeEE
Confidence 34455 4788987666665531 223344567777765 3553 23333333 44 589999998878999
Q ss_pred EEEeCCCCccEEEEEe
Q 025673 145 LASDADGSVPFFWGTD 160 (249)
Q Consensus 145 ~aRD~~G~rPLyy~~~ 160 (249)
+.+-..-.-||++...
T Consensus 168 i~~T~Na~~P~~~~t~ 183 (234)
T KOG0876|consen 168 ILTTYNAGDPLVWTTG 183 (234)
T ss_pred EEecCCCCCCeeccCC
Confidence 9998887789888643
No 58
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=34.20 E-value=15 Score=29.80 Aligned_cols=27 Identities=7% Similarity=0.277 Sum_probs=18.7
Q ss_pred cceeEEEEEeCCCCEEEEEEeCCCCccEEE
Q 025673 128 QGKFAFILYDSSSKNAFLASDADGSVPFFW 157 (249)
Q Consensus 128 ~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy 157 (249)
.|.|+++++.. ++++-..+ -|++|||=
T Consensus 10 e~~~S~Vv~~~--~~i~t~~~-rGv~pL~~ 36 (134)
T PF08973_consen 10 EENYSCVVLKD--GEIRTSDG-RGVKPLYD 36 (134)
T ss_dssp HTT-SEEEESS--SEEEEE---STTHHHHH
T ss_pred hCCceEEEEeC--CEEEEeCC-CChHHHHH
Confidence 68899999964 56666655 59999983
No 59
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=27.80 E-value=1.3e+02 Score=23.74 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHhCCC------ChHHHHhhhccceeEEEEEeCCCCEE
Q 025673 100 NEVIIVIEAYRTLRDRGP------YPADQVVRDIQGKFAFILYDSSSKNA 143 (249)
Q Consensus 100 sD~Evil~ly~~~~~~G~------~~~~~~l~~L~G~FAf~i~D~~~~~l 143 (249)
+.++.++..+.+ .|. -++.++....+|.|+|..|--+...+
T Consensus 51 ~q~k~~l~~i~e---~G~iird~d~glVDFpa~~Ng~~~~lCWK~DE~~i 97 (123)
T COG4911 51 SQTKKILDEIIE---KGIIIRDIDIGLVDFPAIINGKPAFLCWKIDENDI 97 (123)
T ss_pred HHHHHHHHHHHH---cCceeeccccccccchhhhCCceEEEEEecCCcce
Confidence 445566666655 331 23458888899999999997655544
No 60
>PF03508 Connexin43: Gap junction alpha-1 protein (Cx43); InterPro: IPR013124 The connexins are a family of integral membrane proteins that oligomerise to form intercellular channels that are clustered at gap junctions. These channels are specialised sites of cell-cell contact that allow the passage of ions, intracellular metabolites and messenger molecules (with molecular weight less than 1-2kDa) from the cytoplasm of one cell to its opposing neighbours. They are found in almost all vertebrate cell types, and somewhat similar proteins have been cloned from plant species. Invertebrates utilise a different family of molecules, innexins, that share a similar predicted secondary structure to the vertebrate connexins, but have no sequence identity to them []. Vertebrate gap junction channels are thought to participate in diverse biological functions. For instance, in the heart they permit the rapid cell-cell transfer of action potentials, ensuring coordinated contraction of the cardiomyocytes. They are also responsible for neurotransmission at specialised 'electrical' synapses. In non-excitable tissues, such as the liver, they may allow metabolic cooperation between cells. In the brain, glial cells are extensively-coupled by gap junctions; this allows waves of intracellular Ca2+ to propagate through nervous tissue, and may contribute to their ability to spatially-buffer local changes in extracellular K+ concentration []. The connexin protein family is encoded by at least 13 genes in rodents, with many homologues cloned from other species. They show overlapping tissue expression patterns, most tissues expressing more than one connexin type. Their conductances, permeability to different molecules, phosphorylation and voltage-dependence of their gating, have been found to vary. Possible communication diversity is increased further by the fact that gap junctions may be formed by the association of different connexin isoforms from apposing cells. However, in vitro studies have shown that not all possible combinations of connexins produce active channels [, ]. Hydropathy analysis predicts that all cloned connexins share a common transmembrane (TM) topology. Each connexin is thought to contain 4 TM domains, with two extracellular and three cytoplasmic regions. This model has been validated for several of the family members by in vitro biochemical analysis. Both N- and C-termini are thought to face the cytoplasm, and the third TM domain has an amphipathic character, suggesting that it contributes to the lining of the formed-channel. Amino acid sequence identity between the isoforms is ~50-80%, with the TM domains being well conserved. Both extracellular loops contain characteristically conserved cysteine residues, which likely form intramolecular disulphide bonds. By contrast, the single putative intracellular loop (between TM domains 2 and 3) and the cytoplasmic C terminus are highly variable among the family members. Six connexins are thought to associate to form a hemi-channel, or connexon. Two connexons then interact (likely via the extracellular loops of their connexins) to form the complete gap junction channel. NH2-*** *** *************-COOH ** ** ** ** ** ** ** ** Cytoplasmic ---**----**-----**----**---------------- ** ** ** ** Membrane ** ** ** ** ---**----**-----**----**---------------- ** ** ** ** Extracellular ** ** ** ** ** ** Two sets of nomenclature have been used to identify the connexins. The first, and most commonly used, classifies the connexin molecules according to molecular weight, such as connexin43 (abbreviated to Cx43), indicating a connexin of molecular weight close to 43kDa. However, studies have revealed cases where clear functional homologues exist across species that have quite different molecular masses; therefore, an alternative nomenclature was proposed based on evolutionary considerations, which divides the family into two major subclasses, alpha and beta, each with a number of members []. Due to their ubiquity and overlapping tissue distributions, it has proved difficult to elucidate the functions of individual connexin isoforms. To circumvent this problem, particular connexin-encoding genes have been subjected to targeted-disruption in mice, and the phenotype of the resulting animals investigated. Around half the connexin isoforms have been investigated in this manner []. Further insight into the functional roles of connexins has come from the discovery that a number of human diseases are caused by mutations in connexin genes. For instance, mutations in Cx32 give rise to a form of inherited peripheral neuropathy called X-linked dominant Charcot-Marie-Tooth disease []. Similarly, mutations in Cx26 are responsible for both autosomal recessive and dominant forms of nonsyndromic deafness, a disorder characterised by hearing loss, with no apparent effects on other organ systems. Gap junction alpha-1 protein (also called connexin43, or Cx43) is a connexin of 381 amino acid residues (human isoform) that is widely expressed in several organs and cell types, and is the principal gap junction protein of the heart. Characterisation of genetically-engineered mice that lack Cx43, and also of human patients that have spontaneously-occurring mutations in the gene encoding it (GJA1), suggest Cx43 is essential for the development of normal cardiac architecture and ventricular conduction. Mice lacking Cx43 survive to term but die shortly after birth. They have cardiac malformations that lead to the obstruction of the pulmonary artery, leading to neonatal cyanosis, and subsequent death. This phenotype is reminiscent of some forms of stenosis of the pulmonary artery. Human subjects with visceroatrial heterotaxia (a heart disorder characterised by arterial defects), have been found to have points mutations in the Cx43-encoding gene, as a result of which a potential phosphorylation site within the C terminus is disrupted. Consequently, although these mutant Cx43 molecules still form functional gap junction channels, their response to protein kinase activation is impaired. This domain is found in the C-terminal region of these proteins.; PDB: 1R5S_A.
Probab=21.30 E-value=35 Score=18.39 Aligned_cols=8 Identities=38% Similarity=0.837 Sum_probs=3.3
Q ss_pred CCcccccc
Q 025673 239 VGSAANWS 246 (249)
Q Consensus 239 ~~~~~~~~ 246 (249)
+++|+||+
T Consensus 12 qa~eqnwa 19 (20)
T PF03508_consen 12 QASEQNWA 19 (20)
T ss_dssp -S-S-SS-
T ss_pred hhhhhccc
Confidence 56888886
No 61
>PF12594 DUF3764: Protein of unknown function (DUF3764); InterPro: IPR022240 This family of proteins is found in bacteria. Proteins in this family are typically between 89 and 101 amino acids in length.
Probab=20.70 E-value=40 Score=25.35 Aligned_cols=19 Identities=11% Similarity=0.228 Sum_probs=15.2
Q ss_pred EEEeCCCCccEEEEEecCC
Q 025673 145 LASDADGSVPFFWGTDSEG 163 (249)
Q Consensus 145 ~aRD~~G~rPLyy~~~~dg 163 (249)
..++.+|++|||-|...++
T Consensus 28 ~~~~e~gIk~lyrGvskdD 46 (86)
T PF12594_consen 28 AMHKEFGIKSLYRGVSKDD 46 (86)
T ss_pred HHHHhcCCeEEEEecccCC
Confidence 4457789999999987654
No 62
>COG4315 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.27 E-value=84 Score=25.28 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=22.6
Q ss_pred hhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEe
Q 025673 124 VRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTD 160 (249)
Q Consensus 124 l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~ 160 (249)
-.+-.|.|+++.-+ +++.--+.| | +|||+...
T Consensus 86 ~dka~Gdysii~Rk--DGt~QWa~d--G-kPLY~w~k 117 (138)
T COG4315 86 ADKASGDYSIIARK--DGTKQWAYD--G-KPLYLWVK 117 (138)
T ss_pred ccccCCCeeeEEec--CchhhhhcC--C-ceeEEEee
Confidence 45679999988854 344444555 6 99999765
Done!