Query 025673
Match_columns 249
No_of_seqs 213 out of 1754
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 15:07:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ct9_A Asparagine synthetase B 100.0 8.1E-38 2.8E-42 303.9 13.3 199 28-241 19-231 (553)
2 1jgt_A Beta-lactam synthetase; 100.0 6.2E-32 2.1E-36 260.4 12.7 163 61-240 57-245 (513)
3 1ao0_A Glutamine phosphoribosy 100.0 2.3E-30 7.8E-35 246.3 16.8 169 29-204 16-231 (459)
4 1xff_A D-fructose-6-, glucosam 100.0 5.6E-30 1.9E-34 224.3 16.7 164 28-202 15-224 (240)
5 1q15_A CARA; CMPR, (2S,5S)-5-c 100.0 2.5E-29 8.6E-34 241.7 6.9 176 44-240 28-242 (503)
6 1ecf_A Glutamine phosphoribosy 99.9 5.3E-27 1.8E-31 225.5 19.5 165 28-196 15-236 (504)
7 2bpl_A Glucosamine--fructose-6 99.9 1.1E-26 3.7E-31 227.7 16.3 163 28-201 15-223 (608)
8 3mdn_A Glutamine aminotransfer 99.9 8.9E-23 3.1E-27 182.4 12.7 143 45-201 84-256 (274)
9 1te5_A Conserved hypothetical 99.6 2.5E-16 8.6E-21 139.2 4.7 132 58-198 88-252 (257)
10 1ea0_A Glutamate synthase [NAD 99.5 1.5E-14 5.3E-19 151.4 11.0 113 77-192 228-392 (1479)
11 1ofd_A Ferredoxin-dependent gl 99.5 1.3E-13 4.6E-18 144.7 11.9 113 77-192 224-391 (1520)
12 1vk9_A Conserved hypothetical 38.3 5.7 0.0002 31.8 -0.4 27 128-157 27-53 (151)
No 1
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=100.00 E-value=8.1e-38 Score=303.86 Aligned_cols=199 Identities=22% Similarity=0.386 Sum_probs=164.3
Q ss_pred cHHHHHHHHHhcCCCccc--------eeccceeEEeccCCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC---C
Q 025673 28 KNGLLANHFSSVHPGSVT--------VNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL---N 96 (249)
Q Consensus 28 ~~~~m~~~l~hRGpd~~~--------~~~~rl~i~~~~~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~---~ 96 (249)
.+.+|+++|.|||||+.. +++.||+|++.+ .+.||+ .+.+++++++|||+|||+.+||++|.. |
T Consensus 19 ~~~~m~~~l~hRGpD~~G~~~~~~~~lgh~Rlsi~~~~-~~~QP~----~~~~~~~~lv~NGeIyN~~eLr~~L~~~~~f 93 (553)
T 1ct9_A 19 KALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVN-AGAQPL----YNQQKTHVLAVNGEIYNHQALRAEYGDRYQF 93 (553)
T ss_dssp HHHHHHHTTGGGCBTEEEEEECSSEEEEEEECCCSCTT-TCCSSE----ECTTSCEEEEEEEEETTHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHhccCCCcccEEEECCEEEEEEeeeeeCCC-CCCCCe----EeCCCCEEEEEEEEEECHHHHHHHHhccCcc
Confidence 367899999999999843 344489999987 789999 356788999999999999999999963 8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecchhhhh
Q 025673 97 KTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKK 176 (249)
Q Consensus 97 ~~~sD~Evil~ly~~~~~~G~~~~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~ 176 (249)
.+.||+|+|+++|++ +|. +++++|+|+|||++||.++++|+++||++|+|||||+...++.++||||+++|..
T Consensus 94 ~s~sDtEvil~l~~~---~g~----~~l~~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe~~al~~ 166 (553)
T 1ct9_A 94 QTGSDCEVILALYQE---KGP----EFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVP 166 (553)
T ss_dssp CSCCTTHHHHHHHHH---HTT----TTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTTT
T ss_pred CCCCcHHHHHHHHHH---HHH----HHHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEecCCEEEEeechHHHHh
Confidence 899999999999998 664 7999999999999999988999999999999999999854567999999999987
Q ss_pred ccCCceEEecCCeEEEeCC-eeEEeecCCCCC-CCCCCCCChhhhhcceeceeeccccc-CCCCCCCc
Q 025673 177 GCGKSFAPFPKACFFTSSG-GLRSFEHPMNEL-KPVPRVDSSGQVCGSTFKVDAETKKE-TGMPRVGS 241 (249)
Q Consensus 177 ~~~~~i~~lpPG~~~~~~~-gi~~y~~p~~~~-~~~~~~d~~~~~~~~~f~~~~~~~~~-~~~p~~~~ 241 (249)
.+ ++|++|||||++..++ .+++||+|.... ...+..+..-+.++..+ .+|+.+|. +++| ||.
T Consensus 167 ~~-~~i~~l~pG~~~~~~~g~~~~yw~~~~~~~~~~~~~~~~~~~lr~~L-~~aV~~rl~sdvp-vgv 231 (553)
T 1ct9_A 167 VC-RTIKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQAL-EDSVKSHLMSDVP-YGV 231 (553)
T ss_dssp TC-SEEEECCTTEEEETTTCSEEECCCCGGGSHHHHTTCCCCHHHHHHHH-HHHHHHHTCCSSC-EEE
T ss_pred hc-CCEEEECCCeEEEEcCCcEEEeecCCccccccCCCHHHHHHHHHHHH-HHHHHHHhcCCCc-eEE
Confidence 55 5799999999996543 489999976321 11222234446688888 89999987 8888 663
No 2
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=99.97 E-value=6.2e-32 Score=260.41 Aligned_cols=163 Identities=16% Similarity=0.172 Sum_probs=131.1
Q ss_pred CCCCcCcc-cccCCcEEEEEEEEEcchHHHHHHhcC-CCCCCHHHHHHHHHHHHHhCCCChHHHHhhhccceeEEEEEeC
Q 025673 61 QNPLLPRL-FAVVDDIFCLFQGHIENVALLKQQYGL-NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDS 138 (249)
Q Consensus 61 ~QP~~~~~-~~~~~~~~lv~NGeI~N~~eL~~~L~~-~~~~sD~Evil~ly~~~~~~G~~~~~~~l~~L~G~FAf~i~D~ 138 (249)
.||+.... | .+++++++|||+|||+.+||++|.. |.+.||+|+|+++|++ +|. +++++|+|+|||++||.
T Consensus 57 ~QP~~~~~Pf-~~~~~~lv~NGeIyN~~eLr~~L~~~f~t~sDtEvil~l~~~---~g~----~~~~~l~G~fA~~i~d~ 128 (513)
T 1jgt_A 57 APDRAVARSL-TGAPTTAVLAGEIYNRDELLSVLPAGPAPEGDAELVLRLLER---YDL----HAFRLVNGRFATVVRTG 128 (513)
T ss_dssp CGGGGEEEEC-SSSSEEEEEEEEESCHHHHHHTSCSSCCCSSHHHHHHHHHHH---HGG----GGGGTCCEEEEEEEEET
T ss_pred CCCcccCCcC-CCCCEEEEEEEEEeCHHHHHHHhCCCCCCCCHHHHHHHHHHH---HhH----HhHhhcCeeEEEEEEEC
Confidence 58873210 0 2378999999999999999999953 8899999999999998 553 79999999999999997
Q ss_pred CCCEEEEEEeCCCCccEEEEEecCCeEEEEecchhhhhcc---------------CCceEEecCCeEE-Ee--CCe--eE
Q 025673 139 SSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGC---------------GKSFAPFPKACFF-TS--SGG--LR 198 (249)
Q Consensus 139 ~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~---------------~~~i~~lpPG~~~-~~--~~g--i~ 198 (249)
. +++++|||+|+|||||+.. ++.++||||+++|...+ .++|++|||||++ ++ +++ .+
T Consensus 129 ~--~l~~aRD~~G~kPLyy~~~-~~~~~faSe~~aL~~~~~~~~~~l~~~~~~t~~~~i~~l~pG~~l~i~~~~g~~~~~ 205 (513)
T 1jgt_A 129 D--RVLLATDHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPLADARRVAGLTGVYQVPAGAVMDIDLGSGTAVTH 205 (513)
T ss_dssp T--EEEEEECTTCCSCCEEEEE-TTEEEEESCHHHHHTC--CCCCCCTTSEECSSCSSCEECCTTEEEEEETTTTEEEEE
T ss_pred C--EEEEEECCCCCceeEEEEe-CCEEEEcchHHHHHhccCcccccccCCCccccccceEEcCCCcEEEEEcCCCCEEEE
Confidence 4 3999999999999999987 57899999999998765 2689999999998 44 455 47
Q ss_pred EeecCCCCCCCCCCCCChh---hhhcceeceeeccccc-CCCCCCC
Q 025673 199 SFEHPMNELKPVPRVDSSG---QVCGSTFKVDAETKKE-TGMPRVG 240 (249)
Q Consensus 199 ~y~~p~~~~~~~~~~d~~~---~~~~~~f~~~~~~~~~-~~~p~~~ 240 (249)
+||++.... +..+.+ +.++..+ .+|+.+|. +++| ||
T Consensus 206 ~yw~~~~~~----~~~~~~~~~~~l~~~L-~~aV~~rl~sd~~-vg 245 (513)
T 1jgt_A 206 RTWTPGLSR----RILPEGEAVAAVRAAL-EKAVAQRVTPGDT-PL 245 (513)
T ss_dssp ECCCCCCSC----BCCCHHHHHHHHHHHH-HHHHHHHSCTTCC-CE
T ss_pred eecCCcccc----cCCCHHHHHHHHHHHH-HHHHHHHHhCCCc-EE
Confidence 899976542 223322 4577777 88898887 8888 65
No 3
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=99.97 E-value=2.3e-30 Score=246.28 Aligned_cols=169 Identities=14% Similarity=0.174 Sum_probs=133.2
Q ss_pred HHHHHHHHHhcCCCcccee---------------------------------c--cceeEEecc-CCCCCCCcCcccccC
Q 025673 29 NGLLANHFSSVHPGSVTVN---------------------------------L--GSSGVIAYS-LNRQNPLLPRLFAVV 72 (249)
Q Consensus 29 ~~~m~~~l~hRGpd~~~~~---------------------------------~--~rl~i~~~~-~~~~QP~~~~~~~~~ 72 (249)
...|+.+|.|||||+..+. + .|+++.+.+ ..+.|||... .+.+
T Consensus 16 ~~~~l~~L~hRG~D~~Gi~~~~~~~~~~~k~~g~v~~~~~~~~l~~l~g~~~igH~R~at~g~~~~~n~qP~~~~-~~~~ 94 (459)
T 1ao0_A 16 TYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGELSKVKGKGAIGHVRYATAGGGGYENVQPLLFR-SQNN 94 (459)
T ss_dssp HHHHHHHTGGGCCSEEEEEEECSSCEEEEEEESCHHHHTTSSCTTTCCBSEEEEEEECCC----CGGGSSSEEEB-CTTT
T ss_pred HHHHHHHHHhcCCCcCCEEEEeCCeEEEEecCCcHhhhcchhhhhccCCCEEEEEEecCCCCCCCccCCCCceec-cCCC
Confidence 5689999999999973221 1 145555542 2467998310 0045
Q ss_pred CcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCCC----ChHHHHhhhccceeEEEEEeCCCCEEE
Q 025673 73 DDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGP----YPADQVVRDIQGKFAFILYDSSSKNAF 144 (249)
Q Consensus 73 ~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G~----~~~~~~l~~L~G~FAf~i~D~~~~~l~ 144 (249)
++++++|||+|||+.+||++|.. |.+.||+|+|+++|.+ +|. .++.+++++|+|+|||++|| .++|+
T Consensus 95 g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi~~l~~~---~~~~~~~~a~~~~~~~l~G~fa~~i~d--~~~l~ 169 (459)
T 1ao0_A 95 GSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKR---SGHFTLKDQIKNSLSMLKGAYAFLIMT--ETEMI 169 (459)
T ss_dssp CCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHHHHHHHT---CCCSSHHHHHHHHHTTCCEEEEEEEEC--SSEEE
T ss_pred CcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHH---hccCCHHHHHHHHHHhhccceEEEEEe--CCEEE
Confidence 78999999999999999999853 8899999999999987 441 13458999999999999999 47999
Q ss_pred EEEeCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEE-EeCCee--EEeecCC
Q 025673 145 LASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFF-TSSGGL--RSFEHPM 204 (249)
Q Consensus 145 ~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~~~gi--~~y~~p~ 204 (249)
++||++|+|||||+.. ++.++||||+++|.....+.|++|+||+++ ++.+++ .+||++.
T Consensus 170 ~~RD~~G~rPL~~~~~-~~~~~~ASE~~al~~~~~~~i~~l~pG~~~~i~~~~~~~~~~~~~~ 231 (459)
T 1ao0_A 170 VALDPNGLRPLSIGMM-GDAYVVASETCAFDVVGATYLREVEPGEMLIINDEGMKSERFSMNI 231 (459)
T ss_dssp EEECTTCCSCCEEEEE-TTEEEEESSTHHHHHHTCEEEEECCTTEEEEEETTEEEEEESCSSC
T ss_pred EEECCCCCCCeEEEec-CCEEEEEECchHHhcCCCceEEEECCCEEEEEECCceEEEecCCCc
Confidence 9999999999999998 568999999999987655679999999998 566774 5789754
No 4
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=99.97 E-value=5.6e-30 Score=224.32 Aligned_cols=164 Identities=13% Similarity=0.143 Sum_probs=130.2
Q ss_pred cHHHHHHHHHhcCCCcccee-c----------------------------c-------ceeEEec-cCCCCCCCcCcccc
Q 025673 28 KNGLLANHFSSVHPGSVTVN-L----------------------------G-------SSGVIAY-SLNRQNPLLPRLFA 70 (249)
Q Consensus 28 ~~~~m~~~l~hRGpd~~~~~-~----------------------------~-------rl~i~~~-~~~~~QP~~~~~~~ 70 (249)
.+..|+++|.|||||+..+. + + |+++.+. +..+.|||. +
T Consensus 15 ~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~g~~~~~n~qP~~----~ 90 (240)
T 1xff_A 15 ILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEVNAHPHV----S 90 (240)
T ss_dssp HHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESCHHHHHHHHHHSCCCCSEEEEEEECCSSSCSSTTTSSCEE----E
T ss_pred HHHHHHHHHHhcCCCcCCEEEEecCCcEEEEEcCCcHHHHHhhhhcccCCccEEEEEEeccCCCCCCcccCCCcc----c
Confidence 37789999999999985443 2 1 3444442 235679982 2
Q ss_pred cCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCCC---ChHHHHhhhccceeEEEEEeCC-CCE
Q 025673 71 VVDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGP---YPADQVVRDIQGKFAFILYDSS-SKN 142 (249)
Q Consensus 71 ~~~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G~---~~~~~~l~~L~G~FAf~i~D~~-~~~ 142 (249)
++++++|||+|||+.+||++|.. |.+.||+|+|+++|.++...|. .++.+++++|+|+|||++||.+ .++
T Consensus 91 --~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~g~~~~~ai~~~~~~l~G~fa~~i~d~~~~~~ 168 (240)
T 1xff_A 91 --EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDT 168 (240)
T ss_dssp --TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCEEEEEEEEETTCTTC
T ss_pred --CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcccceEEEEEecCCCCE
Confidence 78999999999999999999853 8899999999999987533232 2245789999999999999975 689
Q ss_pred EEEEEeCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEE-EeCCeeEEeec
Q 025673 143 AFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFF-TSSGGLRSFEH 202 (249)
Q Consensus 143 l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~~~gi~~y~~ 202 (249)
|+++||+ |||||+.. ++.++||||+++|...+. .+.+||||+++ ++.++++.|-.
T Consensus 169 l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~-~~~~l~pG~~~~i~~~~~~~~~~ 224 (240)
T 1xff_A 169 LLAARSG---SPLVIGLG-MGENFIASDQLALLPVTR-RFIFLEEGDIAEITRRSVNIFDK 224 (240)
T ss_dssp EEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCS-EEEECCTTCEEEECSSCEEEECT
T ss_pred EEEEECC---CceEEEEe-CCEEEEEECHHHHHhhCC-eEEEECCCEEEEEECCeEEEEeC
Confidence 9999997 99999997 567999999999987664 58999999998 45666666653
No 5
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=99.95 E-value=2.5e-29 Score=241.67 Aligned_cols=176 Identities=9% Similarity=0.031 Sum_probs=139.6
Q ss_pred cceeccceeEEeccCCCCCCCcCcccccCCcEEEEEEEEEcchH---HHHHHhcC-CCCCCHHHHHHHHHHHHHhCCCCh
Q 025673 44 VTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVA---LLKQQYGL-NKTANEVIIVIEAYRTLRDRGPYP 119 (249)
Q Consensus 44 ~~~~~~rl~i~~~~~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~---eL~~~L~~-~~~~sD~Evil~ly~~~~~~G~~~ 119 (249)
..++++|+++.. ..+.||+ .+.+++++++ |+|||+. +|+++|.. |.+.||+|+|+++|++ +|.
T Consensus 28 ~~igh~R~~t~~--~~~~QP~----~~~~~~~~l~--GeI~N~~~~~eLr~~l~g~f~s~sDtEvil~l~~~---~g~-- 94 (503)
T 1q15_A 28 EALSNGYLFIEQ--NGHYQKC----EMERGTAYLI--GSLYNRTFLIGLAGVWEGEAYLANDAELLALLFTR---LGA-- 94 (503)
T ss_dssp EEETTEEEEEET--TCCEEEE----ECSSSEEEEE--ECCSCHHHHHHHHTTTCGGGGGCCHHHHHHHHHHH---HCG--
T ss_pred eeEeeeeEEEcC--CCCCCCc----CcCCCeEEEE--EEEeCCCChHHHHHHhhCCCCCCChHHHHHHHHHH---HHH--
Confidence 446666888753 3678999 3456677777 9999999 99999864 7899999999999998 663
Q ss_pred HHHHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCe-----------------EEEEecchhhhhc-----
Q 025673 120 ADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGH-----------------LVLSDDVEIVKKG----- 177 (249)
Q Consensus 120 ~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~-----------------~~fASe~~aL~~~----- 177 (249)
+++++|+|+|||++||..++ |+++|||+|+|||||+.. ++. ++||||+++|...
T Consensus 95 --~~l~~l~G~fa~~i~d~~~~-l~~aRD~~G~rPL~y~~~-~~~~~t~~l~l~~~~~~~~~~~faSE~~al~~~~~~~~ 170 (503)
T 1q15_A 95 --NALALAEGDFCFFIDEPNGE-LTVITESRGFSPVHVVQG-KKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADT 170 (503)
T ss_dssp --GGGGGCCSSEEEEEECTTSC-EEEEECSSSSSCCEEEES-SSEEEESCHHHHHHHHCTTSSCBCCHHHHTTCSCCCTT
T ss_pred --HHHHHcCEEEEEEEEeCCCC-EEEEECCCCCeeEEEEEe-CCceecccccccccccCCcceEEecchHHHHhccCCCC
Confidence 79999999999999999878 999999999999999987 566 9999999998764
Q ss_pred --cCCceEEecCCeEE-EeCCe------eEEeecCCCCCCCCCCCCChh---hhhcceeceeeccccc-CCCCCCC
Q 025673 178 --CGKSFAPFPKACFF-TSSGG------LRSFEHPMNELKPVPRVDSSG---QVCGSTFKVDAETKKE-TGMPRVG 240 (249)
Q Consensus 178 --~~~~i~~lpPG~~~-~~~~g------i~~y~~p~~~~~~~~~~d~~~---~~~~~~f~~~~~~~~~-~~~p~~~ 240 (249)
..++|++||||+++ ++.++ .++||++..... ++..+.+ +.++..+ .+|+.+|. +++| ||
T Consensus 171 ~T~~~~v~~l~pG~~~~i~~~g~~~~~~~~~yw~~~~~~~--~~~~~~~~~~~~l~~~L-~~aV~~rl~sd~~-v~ 242 (503)
T 1q15_A 171 YTPVKNAQRLKPGAVHVLTHDSEGYSFVESRTLTTPASNQ--LLALPREPLLALIDRYL-NAPLEDLAPRFDT-VG 242 (503)
T ss_dssp CCSBTTEEECCSSEEEEEEECTTCCEEEEEEESCCCCCCS--CBCCCHHHHHHHHHHHH-HHHHHHHGGGCSE-EE
T ss_pred CcccCCeEEECCCeEEEEeCCCcccccceeeecCCccccc--ccCCCHHHHHHHHHHHH-HHHHHHHHhCCCc-EE
Confidence 13689999999998 44443 578999765422 1222322 4577777 78888887 7887 54
No 6
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=99.95 E-value=5.3e-27 Score=225.54 Aligned_cols=165 Identities=12% Similarity=0.102 Sum_probs=127.9
Q ss_pred cHHHHHHHHHhcCCCcccee----------------------------------cc--ceeEEecc-CCCCCCCcCcccc
Q 025673 28 KNGLLANHFSSVHPGSVTVN----------------------------------LG--SSGVIAYS-LNRQNPLLPRLFA 70 (249)
Q Consensus 28 ~~~~m~~~l~hRGpd~~~~~----------------------------------~~--rl~i~~~~-~~~~QP~~~~~~~ 70 (249)
.+..|+.+|.|||||+..+. +| |+++.+.+ ..+.|||. .+
T Consensus 15 ~l~~~l~~LqhRG~D~aGi~~~~~~~~~~~~k~~g~v~~vf~~~~~~~l~g~~~igH~R~sT~G~~~~~n~QP~~---~~ 91 (504)
T 1ecf_A 15 SIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFY---VN 91 (504)
T ss_dssp HHHHHHHHTGGGCCSEEEEEEECTTSCEEEEEEESCHHHHCCHHHHHHCCSSEEEEEEECCBTTBCTTSCCSCEE---EC
T ss_pred HHHHHHHHHHhcCCCcceEEEEcCCCcEEEEecCCchhhhcCccccccCCCCEEEEEEccCcCCCCCccccCCeE---ec
Confidence 36789999999999973221 11 34444432 35789983 12
Q ss_pred cCCcEEEEEEEEEcchHHHHHHhc----C-CCCCCHHHHHHHHHHHHHh-CCC---------ChHHHHhhhccceeEEEE
Q 025673 71 VVDDIFCLFQGHIENVALLKQQYG----L-NKTANEVIIVIEAYRTLRD-RGP---------YPADQVVRDIQGKFAFIL 135 (249)
Q Consensus 71 ~~~~~~lv~NGeI~N~~eL~~~L~----~-~~~~sD~Evil~ly~~~~~-~G~---------~~~~~~l~~L~G~FAf~i 135 (249)
..++++++|||+|+|+.+||++|. . |.+.||+|+|+++|.++.+ +|. .++.+++++|+|+|||++
T Consensus 92 ~~~~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi~~l~~~~~~~~g~~~~~~~~~~~a~~~~~~~l~G~fa~v~ 171 (504)
T 1ecf_A 92 SPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLIRGAYACVA 171 (504)
T ss_dssp SSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred cCCCEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHhccccccccccHHHHHHHhhhhcCccceEEE
Confidence 234699999999999999999984 2 8899999999999976432 231 124568999999999999
Q ss_pred EeCCCCEEEEEEeCCCCccEEEEEec--C--CeEEEEecchhhhhccCCceEEecCCeEE-EeCCe
Q 025673 136 YDSSSKNAFLASDADGSVPFFWGTDS--E--GHLVLSDDVEIVKKGCGKSFAPFPKACFF-TSSGG 196 (249)
Q Consensus 136 ~D~~~~~l~~aRD~~G~rPLyy~~~~--d--g~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~~~g 196 (249)
|+. .++|+++|||+|+|||||+..+ + +.++||||.++|.....+.|++|+||+++ ++.+|
T Consensus 172 ~~~-~~~l~a~RD~~GirPL~~g~~~~~~g~~~~~~ASE~~al~~~~~~~v~~l~PGe~v~i~~~g 236 (504)
T 1ecf_A 172 MII-GHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGEAIYITEEG 236 (504)
T ss_dssp EET-TTEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHTCEEEEECCTTEEEEEETTC
T ss_pred EEc-CCeEEEEECCCCCCceEEeecccCCCceEEEEEeCchHhhccCccEEEECCCCeEEEEeCCC
Confidence 975 3589999999999999999872 3 37999999999987766779999999998 55566
No 7
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=99.94 E-value=1.1e-26 Score=227.68 Aligned_cols=163 Identities=12% Similarity=0.126 Sum_probs=130.8
Q ss_pred cHHHHHHHHHhcCCCcccee------------------------------------ccceeEEec-cCCCCCCCcCcccc
Q 025673 28 KNGLLANHFSSVHPGSVTVN------------------------------------LGSSGVIAY-SLNRQNPLLPRLFA 70 (249)
Q Consensus 28 ~~~~m~~~l~hRGpd~~~~~------------------------------------~~rl~i~~~-~~~~~QP~~~~~~~ 70 (249)
.+..|+++|.|||||+..+. +.|+++.+. +..+.||+. +
T Consensus 15 ~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~l~~~l~~~~~~~~~~igH~R~at~g~~~~~n~qP~~----~ 90 (608)
T 2bpl_A 15 ILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEVNAHPHV----S 90 (608)
T ss_dssp HHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESSHHHHHHHHHHSCCCCSEEEEEEECCCSSSCCGGGCSCEE----E
T ss_pred HHHHHHHHHHhcCCCcCceEEEecCCcEEEEeCCCcHHHHHHHhhccCCCCCEEEEEEccCCCCCCCccCCCCcc----C
Confidence 47889999999999974322 114444443 234679982 2
Q ss_pred cCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhCCC---ChHHHHhhhccceeEEEEEeCCC-CE
Q 025673 71 VVDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGP---YPADQVVRDIQGKFAFILYDSSS-KN 142 (249)
Q Consensus 71 ~~~~~~lv~NGeI~N~~eL~~~L~~----~~~~sD~Evil~ly~~~~~~G~---~~~~~~l~~L~G~FAf~i~D~~~-~~ 142 (249)
++++++|||+|||+.+||++|.. |.+.||+|+|+++|.++.++|. .++.+++++|+|+|||++||.+. ++
T Consensus 91 --~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEvi~~l~~~~~~~g~~~~~av~~~~~~l~G~fa~~i~d~~~~~~ 168 (608)
T 2bpl_A 91 --EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDT 168 (608)
T ss_dssp --TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHHHHHHHHHHTTCCCHHHHHHHHGGGCCSSEEEEEEETTCTTC
T ss_pred --CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcCceEEEEEecCCCCE
Confidence 78999999999999999999853 8899999999999988543363 23567999999999999999977 89
Q ss_pred EEEEEeCCCCccEEEEEecCCeEEEEecchhhhhccCCceEEecCCeEE-EeCCeeEEee
Q 025673 143 AFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKACFF-TSSGGLRSFE 201 (249)
Q Consensus 143 l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~~lpPG~~~-~~~~gi~~y~ 201 (249)
|+++||+ |||||+.. ++.++||||+++|...+ +.+..|+||+++ ++.++++.|.
T Consensus 169 l~~aRd~---~PL~~g~~-~~~~~~aSe~~al~~~~-~~~~~l~~G~i~~i~~~~~~~~~ 223 (608)
T 2bpl_A 169 LLAARSG---SPLVIGLG-MGENFIASDQLALLPVT-RRFIFLEEGDIAEITRRSVNIFD 223 (608)
T ss_dssp EEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTC-CEEEECCTTCEEEECSSCEEEEC
T ss_pred EEEEECC---CceEEEEe-CCeEEEEechHHHHhcC-CeEEEECCCeEEEEECCeEEEEe
Confidence 9999997 99999998 56799999999998765 468999999998 5566666554
No 8
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=99.89 E-value=8.9e-23 Score=182.43 Aligned_cols=143 Identities=10% Similarity=0.145 Sum_probs=104.1
Q ss_pred ceeccceeEEec-cCCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcC------C---CCCCHHHHHHHHHHHHHh
Q 025673 45 TVNLGSSGVIAY-SLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL------N---KTANEVIIVIEAYRTLRD 114 (249)
Q Consensus 45 ~~~~~rl~i~~~-~~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~------~---~~~sD~Evil~ly~~~~~ 114 (249)
.+++-|+++.+. +..+.|||. .++++++|||+|+|+.+||++|.. | .+.||+|+|+++|..
T Consensus 84 ~igHvR~AT~g~~s~~n~qPf~------~g~~~~~HNG~I~N~~~Lr~~L~~~g~~~~f~~~~~~TDSEvi~~l~~~--- 154 (274)
T 3mdn_A 84 FLSHVRASTGSCISRNNCHPFA------ARRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALS--- 154 (274)
T ss_dssp EEEEC------------CCCEE------ETTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHHHHHHHH---
T ss_pred EEEEEccccCCCCcccCCCCcc------cCCEEEEEeeEEcCHHHHHHHHHhhCCcceecCCCCCChHHHHHHHHHH---
Confidence 355558888764 446889992 378999999999999999988752 3 689999999999965
Q ss_pred CCC-----ChHHHHhhhccce-----------eEEEEEeCCCCEEEEEEeC-CCCccEEEEEecC--CeEEEEecchhhh
Q 025673 115 RGP-----YPADQVVRDIQGK-----------FAFILYDSSSKNAFLASDA-DGSVPFFWGTDSE--GHLVLSDDVEIVK 175 (249)
Q Consensus 115 ~G~-----~~~~~~l~~L~G~-----------FAf~i~D~~~~~l~~aRD~-~G~rPLyy~~~~d--g~~~fASe~~aL~ 175 (249)
++. .++.+++++|+|+ |+|+++|. ++|+++||+ +|++||+|+...+ +.++||||. |.
T Consensus 155 ~~~~~~~~~al~~~l~~l~G~~~~~g~~~~~a~~~~~~d~--~~l~a~Rd~~~G~~Pll~~~~~~~~~~~~vASE~--l~ 230 (274)
T 3mdn_A 155 EGLEHDPHGALARAIARLEGLSRAHGTTPHMRLSAAFSDG--QTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEP--LE 230 (274)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHHHHHSCSSSEEEEEEEECS--SCEEEEEEESSSCCCCCEEEEETTTTEEEEESSC--C-
T ss_pred hhhcCCHHHHHHHHHHHHHhHHhhcCcccCceEEEEEEcC--CEEEEEECCCCCCCCeEEEEEeCCCCEEEEEecc--cc
Confidence 331 2356789999998 99999984 789999998 9999977777643 689999999 43
Q ss_pred hccCCceEEecCCeEE-EeCCeeEEee
Q 025673 176 KGCGKSFAPFPKACFF-TSSGGLRSFE 201 (249)
Q Consensus 176 ~~~~~~i~~lpPG~~~-~~~~gi~~y~ 201 (249)
..+ +.+++|+||+++ +++++++.|-
T Consensus 231 ~~~-~~~~~v~pGeiv~i~~~~v~~~~ 256 (274)
T 3mdn_A 231 TDE-GDWTELRPGRMLTIGAEGAAERD 256 (274)
T ss_dssp -CC-SCCEECCSSEEEEEETTEEEEEE
T ss_pred cCC-ceEEEECcCEEEEEeCCeEEEEE
Confidence 332 459999999998 5677776553
No 9
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1
Probab=99.61 E-value=2.5e-16 Score=139.22 Aligned_cols=132 Identities=9% Similarity=0.020 Sum_probs=96.4
Q ss_pred CCCCCCCcCcccccCCcEEEEEEEEEcchHHHHHHhcCCCCCCHHHHHHHHHHHHHh-C-C--C--ChHHHHhhhcc---
Q 025673 58 LNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRD-R-G--P--YPADQVVRDIQ--- 128 (249)
Q Consensus 58 ~~~~QP~~~~~~~~~~~~~lv~NGeI~N~~eL~~~L~~~~~~sD~Evil~ly~~~~~-~-G--~--~~~~~~l~~L~--- 128 (249)
..+.|||... ..+++++++|||.|.|+++ |.++..|.+.+|+|+|++++.+..+ . + + ..+.+++++|.
T Consensus 88 ~~NahPf~~~--~~~~~~a~aHNG~i~n~~~-r~~~~~~~s~TDSEvi~~li~~~~~~~~~~~~~~~a~~~al~~l~~~~ 164 (257)
T 1te5_A 88 LSNTHPFIRE--LGGRYWTFAHNGQLADFQP-KPGFYRPVGETDSEAAFCDLLNRVRRAFPEPVPVEVLLPVLISACDEY 164 (257)
T ss_dssp GGGCSCEEEE--ETTEEEEEEEESCBSSCCC-CCCSSCCSSCCHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHH
T ss_pred cCcCCCcEec--CCCCeEEEEecCcccCchh-hhccCCcccCCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 3567998310 1146799999999999998 7665458999999999999965321 1 1 1 23445666665
Q ss_pred ---ceeEEEEEeCCCCEEEEEEe----------CCCCccEEE-------EE---ecCCeEEEEecchhhhhccCCceEEe
Q 025673 129 ---GKFAFILYDSSSKNAFLASD----------ADGSVPFFW-------GT---DSEGHLVLSDDVEIVKKGCGKSFAPF 185 (249)
Q Consensus 129 ---G~FAf~i~D~~~~~l~~aRD----------~~G~rPLyy-------~~---~~dg~~~fASe~~aL~~~~~~~i~~l 185 (249)
|.|+|++.|. ++|+++|| |+|.+||+. +. ..++.++||||. |.. .+.++++
T Consensus 165 ~~~G~~n~~l~~g--~~l~a~rd~~L~~~~~~~p~g~rpL~~~~~~i~~g~~~~~~~~~~vvASE~--l~~--~~~wr~v 238 (257)
T 1te5_A 165 RKKGVFNALISDG--DWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEP--LTD--NENWTLQ 238 (257)
T ss_dssp HTTBCCEEEEESS--SCEEEECSSCEEEEEEESSCCCEEEECSSEEEEECCCSSTTCEEEEEESSC--SSS--SSSCEEE
T ss_pred HhcCcEEEEEEcC--CEEEEEEcCCceEEeecCCCcccccccccceeecccccCCCCCEEEEEeCc--cCC--CCCeeEe
Confidence 9999999985 78999999 999999976 31 112368999995 542 4579999
Q ss_pred cCCeEE-EeCCeeE
Q 025673 186 PKACFF-TSSGGLR 198 (249)
Q Consensus 186 pPG~~~-~~~~gi~ 198 (249)
+||+++ +.++++.
T Consensus 239 ~pGe~v~i~~~~~~ 252 (257)
T 1te5_A 239 QSGEWVLWWGGEVL 252 (257)
T ss_dssp CTTCEEEEETTEEE
T ss_pred CCCEEEEEECCEEE
Confidence 999998 4566654
No 10
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=99.54 E-value=1.5e-14 Score=151.41 Aligned_cols=113 Identities=13% Similarity=0.164 Sum_probs=90.6
Q ss_pred EEEEEEEcchHHHHHHhc--------------------C-CCCCCHHHHHHHHHHHHHhCCCChH---------------
Q 025673 77 CLFQGHIENVALLKQQYG--------------------L-NKTANEVIIVIEAYRTLRDRGPYPA--------------- 120 (249)
Q Consensus 77 lv~NGeI~N~~eL~~~L~--------------------~-~~~~sD~Evil~ly~~~~~~G~~~~--------------- 120 (249)
++|||||.|+..+|+.+. . +.+.||+|+|.++++.+...|. .+
T Consensus 228 laHNGeInn~~~nr~~m~are~~~~~~~~G~~l~~~~pii~~~~SDSevld~~lelL~~~g~-~l~~A~~~liPeaw~~~ 306 (1479)
T 1ea0_A 228 LAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSGSLDTVFEVMVRAGR-TAPMVKMMLVPQALTSS 306 (1479)
T ss_dssp EEEEECCTTHHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHHHHHHHHHHHHHTTC-CHHHHHHHHSCCCCC--
T ss_pred EEECChhhCHHHHHHHHHHhHhhhcCchhhhhHHhcCCcCCCCCCcHHHHHHHHHHHHHcCC-CHHHHHHHhCchhhccc
Confidence 899999999999986642 1 6789999999666654322441 11
Q ss_pred --------------HHHhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecchhhhhccCCceE--E
Q 025673 121 --------------DQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFA--P 184 (249)
Q Consensus 121 --------------~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~--~ 184 (249)
..+++.++|.||+++.|. +.++++|||+|.|||.|+.++|+.+++|||..+|.....+-++ +
T Consensus 307 ~~m~~~~~~fye~~~~~me~~dGp~slv~~dg--~~l~a~~DrnGlRPl~~g~t~d~~~v~ASE~galdi~~a~~vrkg~ 384 (1479)
T 1ea0_A 307 QTTPDNHKALIQYCNSVMEPWDGPAALAMTDG--RWVVGGMDRNGLRPMRYTITTDGLIIGGSETGMVKIDETQVIEKGR 384 (1479)
T ss_dssp -CCCHHHHHHHHHHHHHCCCCCSSEEEEECSS--SEEEEECCTTCCSCCEEEEETTSEEEECSSSTTSCCCGGGEEEEEE
T ss_pred ccCCHHHHHHHHHHHHhhccCCCcEEEEEEeC--CEEEEEecCCCCcceEEEEECCCEEEEEcccccccCcchheeeccC
Confidence 123578999999999875 8999999999999999999877789999999999765555566 9
Q ss_pred ecCCeEEE
Q 025673 185 FPKACFFT 192 (249)
Q Consensus 185 lpPG~~~~ 192 (249)
+.||+++.
T Consensus 385 l~PGemv~ 392 (1479)
T 1ea0_A 385 LGPGEMIA 392 (1479)
T ss_dssp CCTTCEEE
T ss_pred CCCCeEEE
Confidence 99999983
No 11
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=99.47 E-value=1.3e-13 Score=144.69 Aligned_cols=113 Identities=13% Similarity=0.125 Sum_probs=89.1
Q ss_pred EEEEEEEcchHHHH------HH-----------h---c-C-CCCCCHHHHHHHHHHHHHhCCCChHHH------------
Q 025673 77 CLFQGHIENVALLK------QQ-----------Y---G-L-NKTANEVIIVIEAYRTLRDRGPYPADQ------------ 122 (249)
Q Consensus 77 lv~NGeI~N~~eL~------~~-----------L---~-~-~~~~sD~Evil~ly~~~~~~G~~~~~~------------ 122 (249)
++|||||.|+..+| +. | . . +.+.||+|+|.++++-+...|. .+.+
T Consensus 224 LaHNGeInt~~~nrnwm~aR~~~~~s~~~~g~~l~~~~p~i~~~~SDSe~ld~~lelL~~~g~-~l~~A~~~liPeaw~~ 302 (1520)
T 1ofd_A 224 LGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLDSALELLVRTGR-SPLEAAMILVPEAYKN 302 (1520)
T ss_dssp EEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHHHHHHHHHHHHHHTTC-CHHHHHHHHSCCCCTT
T ss_pred eEecchhhcHHHHHHHHHHHHHHhcCcccchhhHHhhCCcCCCCCCcHHHHHHHHHHHHhcCC-CHHHHHHHhCcchhcc
Confidence 89999999998887 32 1 2 1 7899999999877664322442 1111
Q ss_pred -------------------HhhhccceeEEEEEeCCCCEEEEEEeCCCCccEEEEEecCCeEEEEecchhhhhccCCceE
Q 025673 123 -------------------VVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFA 183 (249)
Q Consensus 123 -------------------~l~~L~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy~~~~dg~~~fASe~~aL~~~~~~~i~ 183 (249)
+++.++|.||+++.|. +.++++|||+|.|||.|+.++|+.+++|||..+|.....+-++
T Consensus 303 ~~~m~~~~~~~~fyey~~~~me~~dGpaalv~~dg--~~l~a~~DrnGlRPl~~~~t~d~~~v~ASE~galdi~~a~~vr 380 (1520)
T 1ofd_A 303 QPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDG--KIVGAGLDRNGLRPARYCITKDDYIVLGSEAGVVDLPEVDIVE 380 (1520)
T ss_dssp CGGGTTCHHHHHHHHHHTTTCCCCCSSEEEEEECS--SEEEEEECTTCCSCCEEEEETTCCEEEESSTTCSCCCGGGEEE
T ss_pred cccccccHHHHHHHHHHHHhcccCCCCEEEEEEeC--CEEEEEecCCCCCceEEEEeCCCEEEEEcccccccCcchheee
Confidence 2578899999999885 8999999999999999999976779999999999765555566
Q ss_pred --EecCCeEEE
Q 025673 184 --PFPKACFFT 192 (249)
Q Consensus 184 --~lpPG~~~~ 192 (249)
++.||+++.
T Consensus 381 kg~l~PGemv~ 391 (1520)
T 1ofd_A 381 KGRLAPGQMIA 391 (1520)
T ss_dssp EEECCTTCEEE
T ss_pred ccCCCCCeEEE
Confidence 899999983
No 12
>1vk9_A Conserved hypothetical protein TM1506; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3
Probab=38.26 E-value=5.7 Score=31.81 Aligned_cols=27 Identities=19% Similarity=0.453 Sum_probs=21.2
Q ss_pred cceeEEEEEeCCCCEEEEEEeCCCCccEEE
Q 025673 128 QGKFAFILYDSSSKNAFLASDADGSVPFFW 157 (249)
Q Consensus 128 ~G~FAf~i~D~~~~~l~~aRD~~G~rPLyy 157 (249)
.|.|++++.+ .+.++-..++ |++|||=
T Consensus 27 e~~~ScVv~~--~~~i~ts~~r-Gv~pL~~ 53 (151)
T 1vk9_A 27 KKDLSLLAYS--GRSIFESKDS-GLKPVVE 53 (151)
T ss_dssp HTTCSEEEES--SSEEEEECCS-TTHHHHH
T ss_pred hCCeeEEEec--CCEEEEeCCc-ChHHHHH
Confidence 6899999954 4677777765 9999984
Done!