Your job contains 1 sequence.
>025674
MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASP
TYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA
PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG
YPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN
TIVQTLSGN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025674
(249 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2079117 - symbol:LHCA4 "light-harvesting chlor... 1149 1.3e-116 1
TAIR|locus:2082767 - symbol:LHCA2 "photosystem I light ha... 595 6.6e-58 1
TAIR|locus:2825741 - symbol:Lhca5 "photosystem I light ha... 540 4.4e-52 1
TAIR|locus:2202150 - symbol:Lhca6 "photosystem I light ha... 525 1.7e-50 1
TAIR|locus:2082717 - symbol:LHCA1 "photosystem I light ha... 387 7.2e-36 1
UNIPROTKB|P12330 - symbol:CAB1R "Chlorophyll a-b binding ... 328 1.3e-29 1
TAIR|locus:2019287 - symbol:CAB3 "chlorophyll A/B binding... 320 9.1e-29 1
TAIR|locus:2019372 - symbol:CAB2 "chlorophyll A/B-binding... 320 9.1e-29 1
TAIR|locus:2019322 - symbol:CAB1 "chlorophyll A/B binding... 320 9.1e-29 1
TAIR|locus:2200868 - symbol:LHCA3 "photosystem I light ha... 319 1.2e-28 1
TAIR|locus:2040934 - symbol:LHB1B2 "photosystem II light ... 319 1.2e-28 1
TAIR|locus:2040944 - symbol:LHB1B1 "light-harvesting chlo... 316 2.4e-28 1
TAIR|locus:2122794 - symbol:LHCB5 "light harvesting compl... 314 3.9e-28 1
UNIPROTKB|P12331 - symbol:CAB2R "Chlorophyll a-b binding ... 313 5.0e-28 1
TAIR|locus:2097608 - symbol:LHCB4.2 "light harvesting com... 216 5.2e-28 2
TAIR|locus:2089139 - symbol:LHCB2.3 "photosystem II light... 309 1.3e-27 1
TAIR|locus:2044988 - symbol:LHCB2.2 "photosystem II light... 307 2.2e-27 1
TAIR|locus:2042148 - symbol:LHCB2.1 "photosystem II light... 307 2.2e-27 1
TAIR|locus:2149765 - symbol:LHCB4.1 "light harvesting com... 217 2.8e-27 2
TAIR|locus:2011691 - symbol:AT1G76570 species:3702 "Arabi... 303 5.7e-27 1
TAIR|locus:2162540 - symbol:LHCB3 "light-harvesting chlor... 274 6.8e-24 1
TAIR|locus:2047751 - symbol:LHCB4.3 "light harvesting com... 179 3.4e-22 2
TAIR|locus:2036209 - symbol:LHCB6 "light harvesting compl... 251 1.9e-21 1
UNIPROTKB|Q93WD2 - symbol:Lhcb4 "Chlorophyll a-b binding ... 167 7.6e-20 2
TAIR|locus:2146544 - symbol:AT5G28450 species:3702 "Arabi... 226 8.3e-19 1
>TAIR|locus:2079117 [details] [associations]
symbol:LHCA4 "light-harvesting chlorophyll-protein
complex I subunit A4" species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009765
"photosynthesis, light harvesting" evidence=IEA] [GO:0015979
"photosynthesis" evidence=ISS] [GO:0016020 "membrane"
evidence=IEA;IDA] [GO:0016168 "chlorophyll binding"
evidence=ISS;NAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0080167 "response to karrikin" evidence=IEP] [GO:0019344
"cysteine biosynthetic process" evidence=RCA] [GO:0030003 "cellular
cation homeostasis" evidence=RCA] [GO:0070838 "divalent metal ion
transport" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0009941 GO:GO:0080167 GO:GO:0018298 GO:GO:0009535
GO:GO:0010287 EMBL:AL132955 EMBL:M63931 EMBL:AY093080 EMBL:BT000093
EMBL:AY086470 IPI:IPI00523187 PIR:T45707 RefSeq:NP_190331.3
UniGene:At.21346 UniGene:At.27524 UniGene:At.35504 UniGene:At.35803
UniGene:At.66361 UniGene:At.68076 UniGene:At.71101
ProteinModelPortal:P27521 SMR:P27521 STRING:P27521 PaxDb:P27521
PRIDE:P27521 EnsemblPlants:AT3G47470.1 GeneID:823901
KEGG:ath:AT3G47470 TAIR:At3g47470 eggNOG:NOG249845
HOGENOM:HOG000238033 InParanoid:P27521 KO:K08910 OMA:WFVQAEL
PhylomeDB:P27521 ProtClustDB:PLN00101 Genevestigator:P27521
GermOnline:AT3G47470 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
Uniprot:P27521
Length = 251
Score = 1149 (409.5 bits), Expect = 1.3e-116, P = 1.3e-116
Identities = 216/251 (86%), Positives = 229/251 (91%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSA---SFKVEAK-GEWLPG 56
MATVTT ASA++FRPC SK RFLTGSSG+LNR+++ + SSA SFKVEAK GEWLPG
Sbjct: 1 MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPG 60
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
LASP YL GSL GDNGFDPLGLAEDPENLKW+VQAELVN RWAMLGV GMLLPEVFTKIG
Sbjct: 61 LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120
Query: 117 IINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 176
IIN P+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP
Sbjct: 121 IINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPK 180
Query: 177 NEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISD 236
EVGYPGGIFNPLNFAPT EAKEKELANGRLAMLAFLGF+VQHNVTGKGPFENLLQH+SD
Sbjct: 181 GEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSD 240
Query: 237 PWHNTIVQTLS 247
PWHNTIVQT +
Sbjct: 241 PWHNTIVQTFN 251
>TAIR|locus:2082767 [details] [associations]
symbol:LHCA2 "photosystem I light harvesting complex gene
2" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0009768 "photosynthesis, light harvesting in
photosystem I" evidence=TAS] [GO:0009782 "photosystem I antenna
complex" evidence=TAS] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009534
"chloroplast thylakoid" evidence=IDA] InterPro:IPR001344
Pfam:PF00504 EMBL:CP002686 GO:GO:0009535 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
TCDB:5.B.4.1.1 UniGene:At.46743 UniGene:At.55066 KO:K08908
EMBL:AF134120 EMBL:AY054670 EMBL:AY065429 EMBL:AY072483
EMBL:BT002070 IPI:IPI00543126 PIR:T50550 RefSeq:NP_191706.2
ProteinModelPortal:Q9SYW8 SMR:Q9SYW8 STRING:Q9SYW8 PRIDE:Q9SYW8
EnsemblPlants:AT3G61470.1 GeneID:825320 KEGG:ath:AT3G61470
TAIR:At3g61470 InParanoid:Q9SYW8 OMA:SWYTAGE PhylomeDB:Q9SYW8
ProtClustDB:CLSN2696878 ArrayExpress:Q9SYW8 Genevestigator:Q9SYW8
Uniprot:Q9SYW8
Length = 257
Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
Identities = 122/246 (49%), Positives = 155/246 (63%)
Query: 8 ASAAVFRPCASKSRFLTGSSGKLNREVALKPVSS-SASFKVEAKGE----WLPGLASPTY 62
AS+A+ S FL G +L +++ + VS AS + A W PG P +
Sbjct: 7 ASSAI--AAISSPSFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPGSTPPEW 64
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQ 122
L+GSLPGD GFDPLGL+ DP++LKW VQAE+V+ RWAMLG G+ +PE TKIGI+N P
Sbjct: 65 LDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPS 124
Query: 123 WYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYP 182
WY AG+ EYF +TLFV+E IL + E RRW DI PGSVN DP+F L +VGYP
Sbjct: 125 WYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYP 184
Query: 183 GGI-FNPLNF-----APTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISD 236
GG+ F+PL + A E + KE+ NGRLAMLA +G QH TG GP +NL H++D
Sbjct: 185 GGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLAD 244
Query: 237 PWHNTI 242
P H TI
Sbjct: 245 PGHATI 250
>TAIR|locus:2825741 [details] [associations]
symbol:Lhca5 "photosystem I light harvesting complex gene
5" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0030076
"light-harvesting complex" evidence=ISS] [GO:0009535 "chloroplast
thylakoid membrane" evidence=IDA] [GO:0009782 "photosystem I
antenna complex" evidence=IDA] [GO:0031409 "pigment binding"
evidence=IDA] [GO:0009768 "photosynthesis, light harvesting in
photosystem I" evidence=IGI] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0009657 "plastid organization" evidence=RCA]
[GO:0010027 "thylakoid membrane organization" evidence=RCA]
[GO:0010207 "photosystem II assembly" evidence=RCA]
InterPro:IPR001344 Pfam:PF00504 EMBL:CP002684 EMBL:AC083835
GO:GO:0009535 GO:GO:0031409 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511 GO:GO:0009768
UniGene:At.52042 EMBL:AY062097 EMBL:AY090263 EMBL:AK221694
IPI:IPI00542586 PIR:F96510 RefSeq:NP_175137.1 RefSeq:NP_849778.1
UniGene:At.20798 ProteinModelPortal:Q9C639 SMR:Q9C639 STRING:Q9C639
PRIDE:Q9C639 EnsemblPlants:AT1G45474.1 EnsemblPlants:AT1G45474.2
GeneID:841099 KEGG:ath:AT1G45474 TAIR:At1g45474 InParanoid:Q9C639
KO:K08911 OMA:VQASVTH PhylomeDB:Q9C639 ProtClustDB:PLN00147
Genevestigator:Q9C639 GO:GO:0009782 Uniprot:Q9C639
Length = 256
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 107/206 (51%), Positives = 142/206 (68%)
Query: 50 KGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
+ WLPGL P YL+G+L GD GFDPLGL EDPE+LKWYVQAELV+SR+AMLGV G+L
Sbjct: 46 RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105
Query: 110 EVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI 168
++ GI N P WY+AG ++ FAS+ TL V++F+L + E +R+ D +PGS ++
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165
Query: 169 F---KQYSLPPNEVGYPGG-IFNPLNFAP----TDEAKEKELANGRLAMLAFLGFIVQHN 220
F + +L E GYPGG + NPL A + K KE+ NGRLAM+A LGF VQ +
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225
Query: 221 VTGKGPFENLLQHISDPWHNTIVQTL 246
VT GP +NL++H+S+PWH TI+QTL
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTL 251
>TAIR|locus:2202150 [details] [associations]
symbol:Lhca6 "photosystem I light harvesting complex gene
6" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009637 "response to blue light"
evidence=IEP;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0010218 "response to far red light"
evidence=IEP;RCA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0009744 "response to sucrose stimulus" evidence=RCA]
[GO:0010155 "regulation of proton transport" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0019761
"glucosinolate biosynthetic process" evidence=RCA] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0070838 "divalent
metal ion transport" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
EMBL:CP002684 GO:GO:0009507 GO:GO:0016020 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 KO:K08908 EMBL:AY086461 EMBL:BT020322
EMBL:BT020554 IPI:IPI00532569 RefSeq:NP_173349.1 UniGene:At.359
ProteinModelPortal:Q8LCQ4 SMR:Q8LCQ4 STRING:Q8LCQ4 PRIDE:Q8LCQ4
DNASU:838498 EnsemblPlants:AT1G19150.1 GeneID:838498
KEGG:ath:AT1G19150 TAIR:At1g19150 InParanoid:Q8LCQ4 OMA:WFAQAEL
PhylomeDB:Q8LCQ4 ProtClustDB:PLN00098 Genevestigator:Q8LCQ4
Uniprot:Q8LCQ4
Length = 270
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 111/262 (42%), Positives = 155/262 (59%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSS--GKLNRE--VAL---KPVSSSASFKVEAKGEW 53
+ + T +++ V P + + SS G+L RE V + K VSS + W
Sbjct: 9 LTSTLTLSTSRVQNPTQRRPHVASTSSTGGRLMRERLVVVRAGKEVSSVCEPLPPDRPLW 68
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
PG + P +L+GSLPGD GFDPLGL DP+ LKW+ QAEL++SRWAML V G+++PE
Sbjct: 69 FPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLE 128
Query: 114 KIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYS 173
++G I WYDAG EYFA S+TLFV + +L + E RRW D+ PGSV+ +P +
Sbjct: 129 RLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKV 188
Query: 174 LPPNEVGYPGGI-FNPLNFA-----PTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPF 227
P +VGYPGG+ F+ + + P + KE+ NGRLAMLAFLGF Q T + P
Sbjct: 189 NPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPI 248
Query: 228 ENLLQHISDPWHNTIVQTLSGN 249
ENL+ H++DP H + + +
Sbjct: 249 ENLMAHLADPGHCNVFSAFTSH 270
>TAIR|locus:2082717 [details] [associations]
symbol:LHCA1 "photosystem I light harvesting complex gene
1" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009768 "photosynthesis, light harvesting in photosystem I"
evidence=IMP] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0010218 "response to far red light"
evidence=IEP;RCA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009644 "response
to high light intensity" evidence=RCA] [GO:0009744 "response to
sucrose stimulus" evidence=RCA] [GO:0010155 "regulation of proton
transport" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AL049655
GO:GO:0046872 GO:GO:0009941 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 GO:GO:0010287
HOGENOM:HOG000238033 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 EMBL:M85150 EMBL:X56062
EMBL:AF324692 EMBL:AF325016 EMBL:AF326866 EMBL:AF339688
EMBL:AF361847 EMBL:AY070473 EMBL:AY094437 EMBL:BT000852
EMBL:AK317555 IPI:IPI00516813 PIR:S25435 RefSeq:NP_191049.1
UniGene:At.23982 UniGene:At.67867 PDB:2O01 PDB:2WSC PDB:2WSE
PDB:2WSF PDBsum:2O01 PDBsum:2WSC PDBsum:2WSE PDBsum:2WSF
ProteinModelPortal:Q01667 SMR:Q01667 DIP:DIP-59003N STRING:Q01667
PaxDb:Q01667 PRIDE:Q01667 ProMEX:Q01667 EnsemblPlants:AT3G54890.1
GeneID:824654 KEGG:ath:AT3G54890 TAIR:At3g54890 eggNOG:NOG263751
InParanoid:Q01667 KO:K08907 OMA:LAIEFLA PhylomeDB:Q01667
ProtClustDB:PLN00099 EvolutionaryTrace:Q01667 Genevestigator:Q01667
GO:GO:0009768 Uniprot:Q01667
Length = 241
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 93/231 (40%), Positives = 129/231 (55%)
Query: 26 SSGKLNREVALKPVSSSASF-KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPEN 84
SS K A P+ ++ + ++ W+PG P YL+GS PGD GFDPLGL E P N
Sbjct: 20 SSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPAN 79
Query: 85 LKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQW--YDAGKAEYFASS------S 136
L+ Y ++EL++ RWAML V G+L+PE + A +W G+A Y +
Sbjct: 80 LERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLP 139
Query: 137 TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA--PT 194
T+ IEF+ +VE +R S+ +DP K+Y PGG F+PL ++ P
Sbjct: 140 TILAIEFLAIAFVEHQR--------SMEKDPEKKKY---------PGGAFDPLGYSKDPK 182
Query: 195 --DEAKEKELANGRLAMLAFLGFIVQHNV-TGKGPFENLLQHISDPWHNTI 242
+E K KE+ NGRLA+LAF+GF VQ + G GP ENL H++DPWHN I
Sbjct: 183 KLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
>UNIPROTKB|P12330 [details] [associations]
symbol:CAB1R "Chlorophyll a-b binding protein 1,
chloroplastic" species:39947 "Oryza sativa Japonica Group"
[GO:0009535 "chloroplast thylakoid membrane" evidence=ISS]
[GO:0015979 "photosynthesis" evidence=ISS] InterPro:IPR001344
Pfam:PF00504 GO:GO:0016021 GO:GO:0005739 GO:GO:0046872
GO:GO:0048046 GO:GO:0009941 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 GO:GO:0010287
GO:GO:0015979 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
HOGENOM:HOG000238032 KO:K08912 ProtClustDB:PLN00025 EMBL:X13908
EMBL:D00641 EMBL:AP005313 EMBL:AP005700 EMBL:AK060851 PIR:A44956
PIR:S03705 RefSeq:NP_001062939.1 UniGene:Os.7941
ProteinModelPortal:P12330 SMR:P12330 STRING:P12330
EnsemblPlants:LOC_Os09g17740.1 GeneID:4346803
KEGG:dosa:Os09t0346500-04 KEGG:osa:4346803 Gramene:P12330
eggNOG:NOG322441 OMA:GEARITM Uniprot:P12330
Length = 265
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 93/256 (36%), Positives = 129/256 (50%)
Query: 1 MATVTTQASAAVF-RPCASKSRFLTGSSGKLNREVALKP---VSSSASFKVEAKGEWLPG 56
MA T S+ V R S S L G + R+ A KP SS + + + +L
Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGP 60
Query: 57 LAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK 114
L+ P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +
Sbjct: 61 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 120
Query: 115 IGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQ 171
G+ W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 121 NGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEG---YRI 176
Query: 172 YSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGK 224
P EV YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGK
Sbjct: 177 AGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 225 GPFENLLQHISDPWHN 240
GP ENL H++DP +N
Sbjct: 237 GPLENLADHLADPVNN 252
>TAIR|locus:2019287 [details] [associations]
symbol:CAB3 "chlorophyll A/B binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0016168 "chlorophyll
binding" evidence=ISS;TAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0010287
"plastoglobule" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002684 GO:GO:0005739 GO:GO:0046872
GO:GO:0018298 GO:GO:0009535 UniGene:At.49175 GO:GO:0010287
EMBL:AC008030 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
IPI:IPI00527705 RefSeq:NP_564339.1 RefSeq:NP_564340.1
UniGene:At.10812 UniGene:At.24351 UniGene:At.27031 UniGene:At.32199
UniGene:At.43708 UniGene:At.66422 UniGene:At.70617 UniGene:At.71449
UniGene:At.71528 UniGene:At.71547 DNASU:839869 DNASU:839870
EnsemblPlants:AT1G29910.1 EnsemblPlants:AT1G29920.1 GeneID:839869
GeneID:839870 KEGG:ath:AT1G29910 KEGG:ath:AT1G29920 KO:K08912
EMBL:X03908 EMBL:AY065165 EMBL:AY114594 ProteinModelPortal:Q8VZ87
SMR:Q8VZ87 IntAct:Q8VZ87 STRING:Q8VZ87 PaxDb:Q8VZ87 PRIDE:Q8VZ87
TAIR:At1g29910 eggNOG:NOG327854 PhylomeDB:Q8VZ87
Genevestigator:Q8VZ87 GermOnline:AT1G29910 Uniprot:Q8VZ87
Length = 267
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 90/245 (36%), Positives = 125/245 (51%)
Query: 8 ASAAV-FRPCASKSRFLTGSSGKLNREVALKPVSSSAS-FKVEAKGEWLPGLA--SPTYL 63
A AV P AS+ + GS R+ KP S S + + ++L + SP+YL
Sbjct: 14 AGKAVNLSPAASE---VLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYL 70
Query: 64 NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQ 122
G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 71 TGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAV 130
Query: 123 WYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNE-V 179
W+ AG ++ F+ ++ L H I W + G+V + L E +
Sbjct: 131 WFKAG-SQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDL 189
Query: 180 GYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHIS 235
YPGG F+PL A EA K KEL NGRLAM + GF VQ VTGKGP ENL H++
Sbjct: 190 LYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLA 249
Query: 236 DPWHN 240
DP +N
Sbjct: 250 DPVNN 254
>TAIR|locus:2019372 [details] [associations]
symbol:CAB2 "chlorophyll A/B-binding protein 2"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0016168 "chlorophyll
binding" evidence=ISS;TAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP] [GO:0010114 "response to red light" evidence=IEP]
[GO:0010218 "response to far red light" evidence=IEP] [GO:0009750
"response to fructose stimulus" evidence=IEP] [GO:0005794 "Golgi
apparatus" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872
GO:GO:0048046 GO:GO:0009750 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 UniGene:At.49175
EMBL:AC008030 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511 EMBL:X03907
EMBL:AY052237 EMBL:AY054198 EMBL:AY060500 EMBL:AY062814
EMBL:AY081572 EMBL:AY128345 EMBL:BT000726 EMBL:AY086905
IPI:IPI00527705 PIR:A29280 RefSeq:NP_564339.1 RefSeq:NP_564340.1
UniGene:At.10812 UniGene:At.24351 UniGene:At.27031 UniGene:At.32199
UniGene:At.43708 UniGene:At.66422 UniGene:At.70617 UniGene:At.71449
UniGene:At.71528 UniGene:At.71547 ProteinModelPortal:P0CJ48
SMR:P0CJ48 IntAct:P0CJ48 PRIDE:P0CJ48 DNASU:839869 DNASU:839870
EnsemblPlants:AT1G29910.1 EnsemblPlants:AT1G29920.1 GeneID:839869
GeneID:839870 KEGG:ath:AT1G29910 KEGG:ath:AT1G29920 TAIR:At1g29920
HOGENOM:HOG000238032 KO:K08912 PhylomeDB:P0CJ48 Uniprot:P0CJ48
Length = 267
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 90/245 (36%), Positives = 125/245 (51%)
Query: 8 ASAAV-FRPCASKSRFLTGSSGKLNREVALKPVSSSAS-FKVEAKGEWLPGLA--SPTYL 63
A AV P AS+ + GS R+ KP S S + + ++L + SP+YL
Sbjct: 14 AGKAVNLSPAASE---VLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYL 70
Query: 64 NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQ 122
G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 71 TGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAV 130
Query: 123 WYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNE-V 179
W+ AG ++ F+ ++ L H I W + G+V + L E +
Sbjct: 131 WFKAG-SQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDL 189
Query: 180 GYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHIS 235
YPGG F+PL A EA K KEL NGRLAM + GF VQ VTGKGP ENL H++
Sbjct: 190 LYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLA 249
Query: 236 DPWHN 240
DP +N
Sbjct: 250 DPVNN 254
>TAIR|locus:2019322 [details] [associations]
symbol:CAB1 "chlorophyll A/B binding protein 1"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016168
"chlorophyll binding" evidence=ISS;TAS] [GO:0030076
"light-harvesting complex" evidence=ISS] [GO:0009535 "chloroplast
thylakoid membrane" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0015979
"photosynthesis" evidence=ISS] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872
UniGene:At.23809 GO:GO:0018298 GO:GO:0009535 UniGene:At.49175
EMBL:AC008030 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
UniGene:At.10812 UniGene:At.24351 UniGene:At.32199 UniGene:At.43708
UniGene:At.66422 UniGene:At.71449 UniGene:At.71528
HOGENOM:HOG000238032 KO:K08912 eggNOG:NOG327854
GermOnline:AT1G29910 EMBL:X03909 EMBL:AF428359 EMBL:AY045673
EMBL:AY050935 EMBL:AY058180 EMBL:AY091169 EMBL:X15221 EMBL:X15222
EMBL:Z17799 IPI:IPI00547631 PIR:A86423 RefSeq:NP_174286.1
UniGene:At.19140 UniGene:At.48174 UniGene:At.71551
ProteinModelPortal:P04778 SMR:P04778 IntAct:P04778 STRING:P04778
PaxDb:P04778 PRIDE:P04778 ProMEX:P04778 EnsemblPlants:AT1G29930.1
GeneID:839871 KEGG:ath:AT1G29930 TAIR:At1g29930 InParanoid:P04778
OMA:SSGIEFY PhylomeDB:P04778 ProtClustDB:PLN00025
Genevestigator:P04778 Uniprot:P04778
Length = 267
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 88/242 (36%), Positives = 123/242 (50%)
Query: 10 AAVFRPCASKSRFLTGSSGKLNREVALKPVSSSAS-FKVEAKGEWLPGLA--SPTYLNGS 66
A P AS+ + GS R+ KP S S + + ++L + SP+YL G
Sbjct: 17 AVKLSPAASE---VLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGE 73
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYD 125
PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+ W+
Sbjct: 74 FPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFK 133
Query: 126 AGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNE-VGYP 182
AG ++ F+ ++ L H I W + G+V + L E + YP
Sbjct: 134 AG-SQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYP 192
Query: 183 GGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPW 238
GG F+PL A EA K KEL NGRLAM + GF VQ VTGKGP ENL H++DP
Sbjct: 193 GGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 252
Query: 239 HN 240
+N
Sbjct: 253 NN 254
>TAIR|locus:2200868 [details] [associations]
symbol:LHCA3 "photosystem I light harvesting complex gene
3" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR001344 Pfam:PF00504 EMBL:CP002684
GO:GO:0009535 GO:GO:0010287 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 PDB:2O01 PDBsum:2O01 UniGene:At.2877 EMBL:AC005850
UniGene:At.21403 EMBL:AY059879 EMBL:AY093370 IPI:IPI00532189
PIR:E96640 RefSeq:NP_001185280.1 RefSeq:NP_176347.1
UniGene:At.20472 UniGene:At.71924 UniGene:At.71944
ProteinModelPortal:Q9SY97 SMR:Q9SY97 STRING:Q9SY97 PRIDE:Q9SY97
ProMEX:Q9SY97 EnsemblPlants:AT1G61520.1 EnsemblPlants:AT1G61520.3
GeneID:842446 KEGG:ath:AT1G61520 TAIR:At1g61520 InParanoid:Q9SY97
KO:K08909 OMA:LMGFAEH PhylomeDB:Q9SY97 ProtClustDB:PLN00048
ArrayExpress:Q9SY97 Genevestigator:Q9SY97 Uniprot:Q9SY97
Length = 273
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 95/266 (35%), Positives = 132/266 (49%)
Query: 3 TVTTQASAAVF--RPCASKSRFLTGSSGKLNREVALKPVSSSAS----FKVEAKGEWLPG 56
T + Q + +F +P AS S+ S + + A PV A+ F +L G
Sbjct: 12 TSSVQTARQIFGSKPVASASQ---KKSSFVVKAAATPPVKQGANRPLWFASSQSLSYLDG 68
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
Y G P DP G E +W E++N R+AMLG G + PE+ K G
Sbjct: 69 SLPGDY--GFDPLGLS-DPEGTGGFIEP-RWLAYGEIINGRFAMLGAAGAIAPEILGKAG 124
Query: 117 IINAPQ---WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 167
+I A W+ AG Y+A + TLFV+E L + E RR QD NPGS+ +
Sbjct: 125 LIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQY 184
Query: 168 IFK-QYSLPPN-EVGYPGG-IFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHN 220
+ L + YPGG FNPL F + E K KE+ NGRLAMLA LG+ +Q
Sbjct: 185 FLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGL 244
Query: 221 VTGKGPFENLLQHISDPWHNTIVQTL 246
VTG GP++NLL H++DP +N ++ +L
Sbjct: 245 VTGVGPYQNLLDHLADPVNNNVLTSL 270
>TAIR|locus:2040934 [details] [associations]
symbol:LHB1B2 "photosystem II light harvesting complex
gene B1B2" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0009769 "photosynthesis, light
harvesting in photosystem II" evidence=TAS] [GO:0016020 "membrane"
evidence=IEA;IDA] [GO:0016168 "chlorophyll binding"
evidence=ISS;TAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0042651 "thylakoid membrane" evidence=TAS]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0015979 "photosynthesis" evidence=ISS] [GO:0010287
"plastoglobule" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009535 GO:GO:0010287
EMBL:AC004077 EMBL:AC004481 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 UniGene:At.10812 UniGene:At.24351 UniGene:At.32199
UniGene:At.66422 UniGene:At.71449 UniGene:At.71528
HOGENOM:HOG000238032 KO:K08912 ProtClustDB:PLN00025
UniGene:At.23647 UniGene:At.27457 UniGene:At.24064 UniGene:At.24888
EMBL:AF372886 EMBL:AY039561 EMBL:AY045806 EMBL:AF428397
EMBL:AF419548 EMBL:AF419587 EMBL:AY065125 EMBL:AY079101
EMBL:AY079110 EMBL:AY081587 EMBL:AY142513 EMBL:AK229627 EMBL:X64460
IPI:IPI00530785 PIR:S23546 RefSeq:NP_565786.1 UniGene:At.71003
UniGene:At.71384 ProteinModelPortal:Q39141 SMR:Q39141 IntAct:Q39141
STRING:Q39141 PRIDE:Q39141 EnsemblPlants:AT2G34420.1 GeneID:818005
KEGG:ath:AT2G34420 TAIR:At2g34420 InParanoid:Q39141
PhylomeDB:Q39141 ArrayExpress:Q39141 Genevestigator:Q39141
Uniprot:Q39141
Length = 265
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 90/253 (35%), Positives = 127/253 (50%)
Query: 1 MATVTTQASAAVFRPCASK--SRFLTGSSGKLNREVALKPVSSSAS-FKVEAKGEWLPGL 57
MA+ T S+ F A K + + GS R+ KP S S + + ++L
Sbjct: 1 MASSTMALSSPAFAGKAVKPAASDVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPF 60
Query: 58 AS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKI 115
+ P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +
Sbjct: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 120
Query: 116 GI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQY 172
G+ W+ AG ++ F+ ++ L H I W + G+V +
Sbjct: 121 GVKFGEAVWFKAG-SQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDG 179
Query: 173 SLPPNE-VGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPF 227
L E + YPGG F+PL A EA K KEL NGRLAM + GF VQ VTGKGP
Sbjct: 180 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 228 ENLLQHISDPWHN 240
ENL H++DP +N
Sbjct: 240 ENLADHLADPVNN 252
>TAIR|locus:2040944 [details] [associations]
symbol:LHB1B1 "light-harvesting chlorophyll-protein
complex II subunit B1" species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009765
"photosynthesis, light harvesting" evidence=IEA] [GO:0009769
"photosynthesis, light harvesting in photosystem II" evidence=TAS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS;TAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0042651 "thylakoid membrane" evidence=TAS]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0015979
"photosynthesis" evidence=ISS] [GO:0010287 "plastoglobule"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=RCA] InterPro:IPR001344 Pfam:PF00504 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009941 GO:GO:0009535 GO:GO:0010287
EMBL:AC004077 EMBL:AC004481 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 UniGene:At.10812 UniGene:At.24351 UniGene:At.66422
UniGene:At.71449 UniGene:At.71528 HOGENOM:HOG000238032 KO:K08912
ProtClustDB:PLN00025 UniGene:At.22980 UniGene:At.71384
EMBL:AF326864 EMBL:AF339687 EMBL:AY120776 EMBL:BT002103 EMBL:X64459
IPI:IPI00535697 PIR:S25677 RefSeq:NP_565787.1 UniGene:At.67299
UniGene:At.71696 ProteinModelPortal:Q39142 SMR:Q39142 STRING:Q39142
PRIDE:Q39142 EnsemblPlants:AT2G34430.1 GeneID:818006
KEGG:ath:AT2G34430 TAIR:At2g34430 InParanoid:Q39142 OMA:RITMRKA
PhylomeDB:Q39142 ArrayExpress:Q39142 Genevestigator:Q39142
Uniprot:Q39142
Length = 266
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 82/225 (36%), Positives = 117/225 (52%)
Query: 27 SGKLNREVALKPVSSSAS-FKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPE 83
+G++ A KP S S + + ++L + P+YL G PGD G+D GL+ DPE
Sbjct: 30 TGRITMRKASKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 89
Query: 84 NLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIE 142
+ E+++SRWAMLG +G + PE+ + G+ W+ AG ++ F+ ++
Sbjct: 90 TFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSDGGLDYLGN 148
Query: 143 FILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNE-VGYPGGIFNPLNFAPTDEA-- 197
L H I W + G+V + L E + YPGG F+PL A EA
Sbjct: 149 PSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFA 208
Query: 198 --KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 240
K KEL NGRLAM + GF VQ VTGKGP ENL H++DP +N
Sbjct: 209 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253
>TAIR|locus:2122794 [details] [associations]
symbol:LHCB5 "light harvesting complex of photosystem II
5" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009533 "chloroplast stromal thylakoid"
evidence=IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS;IMP]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009783 "photosystem II antenna complex"
evidence=IMP] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0010196
"nonphotochemical quenching" evidence=IMP] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0010218 "response to far red light"
evidence=IEP;RCA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009644 "response
to high light intensity" evidence=RCA] [GO:0009744 "response to
sucrose stimulus" evidence=RCA] [GO:0010155 "regulation of proton
transport" evidence=RCA] [GO:0019344 "cysteine biosynthetic
process" evidence=RCA] [GO:0009517 "PSII associated
light-harvesting complex II" evidence=IDA] InterPro:IPR001344
Pfam:PF00504 GO:GO:0016021 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0009637 GO:GO:0010218 GO:GO:0010114
GO:GO:0018298 GO:GO:0010287 GO:GO:0015979 EMBL:AL049488
EMBL:AL161517 GO:GO:0009522 GO:GO:0016168 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 HOGENOM:HOG000238032
EMBL:AF134129 EMBL:AF326900 EMBL:AF339718 EMBL:AF424597
EMBL:AF380631 EMBL:AY054126 EMBL:AY087939 IPI:IPI00535216
PIR:T04049 RefSeq:NP_192772.1 UniGene:At.23060
ProteinModelPortal:Q9XF89 SMR:Q9XF89 DIP:DIP-59004N STRING:Q9XF89
PaxDb:Q9XF89 PRIDE:Q9XF89 EnsemblPlants:AT4G10340.1 GeneID:826626
KEGG:ath:AT4G10340 TAIR:At4g10340 eggNOG:NOG321165
InParanoid:Q9XF89 KO:K08916 OMA:EGPVENL PhylomeDB:Q9XF89
ProtClustDB:CLSN2685679 Genevestigator:Q9XF89 GermOnline:AT4G10340
GO:GO:0009783 GO:GO:0009517 GO:GO:0010196 Uniprot:Q9XF89
Length = 280
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 75/196 (38%), Positives = 105/196 (53%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG + GD G+DP GL + PEN Y EL+++RWAMLG G ++PE K G
Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
Query: 120 APQ--WYDAGKAEYFASSSTL-FVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 176
P+ W+ G +TL + + I + V + ++ G I L
Sbjct: 142 GPEAVWFKTGAL--LLDGNTLNYFGKNIPINLV-LAVVAEVVLLGGAEYYRITN--GLDF 196
Query: 177 NEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQ 232
+ +PGG F+PL A E K KE+ NGRLAM A LGF +Q VTG+GP ENL +
Sbjct: 197 EDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAK 256
Query: 233 HISDPWHNTIVQTLSG 248
H+SDP+ N ++ ++G
Sbjct: 257 HLSDPFGNNLLTVIAG 272
>UNIPROTKB|P12331 [details] [associations]
symbol:CAB2R "Chlorophyll a-b binding protein 2,
chloroplastic" species:39947 "Oryza sativa Japonica Group"
[GO:0009535 "chloroplast thylakoid membrane" evidence=ISS]
[GO:0015979 "photosynthesis" evidence=ISS] InterPro:IPR001344
Pfam:PF00504 GO:GO:0016021 GO:GO:0005739 GO:GO:0046872
GO:GO:0048046 GO:GO:0009941 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 GO:GO:0010287
GO:GO:0015979 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511 KO:K08912
OMA:SSGIEFY ProtClustDB:PLN00025 eggNOG:NOG322441 EMBL:X13909
EMBL:AP003278 EMBL:AK121563 PIR:S03706 RefSeq:NP_001043493.1
UniGene:Os.79136 ProteinModelPortal:P12331 SMR:P12331 STRING:P12331
EnsemblPlants:LOC_Os01g41710.1 GeneID:4324599
KEGG:dosa:Os01t0600900-02 KEGG:dosa:Os03t0165375-00
KEGG:dosa:Os06t0484450-00 KEGG:osa:4324599 Gramene:P12331
Uniprot:P12331
Length = 261
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 88/249 (35%), Positives = 128/249 (51%)
Query: 8 ASAAVFRPC-ASKSRFLTGSSGKLN-REVALKP--VSSSASFKVEAKGEWLPGLAS--PT 61
A+ A+ P A K+ G++ R+ A KP +S + + + +L L+ P+
Sbjct: 4 ATMALSSPALAGKAAAKVFGEGRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPS 63
Query: 62 YLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INA 120
YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 64 YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGE 123
Query: 121 PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNE 178
W+ AG ++ F+ ++ L H I W + G+V ++ P E
Sbjct: 124 AVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEG---YRIAGGPLGE 179
Query: 179 VG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLL 231
V YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL
Sbjct: 180 VVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 239
Query: 232 QHISDPWHN 240
H++DP +N
Sbjct: 240 DHLADPVNN 248
>TAIR|locus:2097608 [details] [associations]
symbol:LHCB4.2 "light harvesting complex photosystem II"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168
"chlorophyll binding" evidence=ISS] [GO:0009941 "chloroplast
envelope" evidence=IDA] [GO:0009535 "chloroplast thylakoid
membrane" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0009637 "response to blue light" evidence=IEP;RCA] [GO:0010114
"response to red light" evidence=IEP;RCA] [GO:0010218 "response to
far red light" evidence=IEP;RCA] [GO:0009534 "chloroplast
thylakoid" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0009644 "response to high light intensity"
evidence=RCA] [GO:0009744 "response to sucrose stimulus"
evidence=RCA] [GO:0010155 "regulation of proton transport"
evidence=RCA] [GO:0015979 "photosynthesis" evidence=RCA]
[GO:0019344 "cysteine biosynthetic process" evidence=RCA]
[GO:0019684 "photosynthesis, light reaction" evidence=RCA]
[GO:0035304 "regulation of protein dephosphorylation" evidence=RCA]
InterPro:IPR001344 Pfam:PF00504 GO:GO:0016021 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0009941 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 GO:GO:0018298 EMBL:AC010871
GO:GO:0009535 HOGENOM:HOG000238033 GO:GO:0009522 GO:GO:0009523
GO:GO:0016168 GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511 KO:K08915
ProtClustDB:PLN00187 EMBL:AF134127 EMBL:AY065140 EMBL:AY081608
IPI:IPI00521901 IPI:IPI00542269 PIR:T52317 RefSeq:NP_187506.1
RefSeq:NP_850545.1 UniGene:At.21828 UniGene:At.22485
UniGene:At.6984 ProteinModelPortal:Q9XF88 SMR:Q9XF88 STRING:Q9XF88
PaxDb:Q9XF88 PRIDE:Q9XF88 ProMEX:Q9XF88 EnsemblPlants:AT3G08940.2
GeneID:820043 KEGG:ath:AT3G08940 TAIR:At3g08940 eggNOG:NOG330021
InParanoid:Q9XF88 OMA:TRFTAWF PhylomeDB:Q9XF88
Genevestigator:Q9XF88 GermOnline:AT3G08940 Uniprot:Q9XF88
Length = 287
Score = 216 (81.1 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 60/170 (35%), Positives = 88/170 (51%)
Query: 85 LKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFI 144
L+ + + EL++ RWAML +G + E T G+ W DAGK E SS ++ + +
Sbjct: 130 LQRFRECELIHGRWAMLATLGAITVEWLT--GVT----WQDAGKVELVDGSS--YLGQPL 181
Query: 145 LFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFA--PTDEAKEK- 200
F + W ++ G + + L + YPGG F+PL A P +A+ +
Sbjct: 182 PFS-ISTLIWIEVLVIGYIEFQ---RNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQL 237
Query: 201 -ELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSGN 249
E+ + RLAM+ FLGF VQ TGKGP N H+SDP H TI+ T S +
Sbjct: 238 AEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 287
Score = 112 (44.5 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 32/89 (35%), Positives = 42/89 (47%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNR-EVALKPVS-SSASFKVEAKGEWLPGLA 58
MA +T A+A+ S + SS R K S A + + W PG
Sbjct: 1 MAATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAK 60
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKW 87
SP YL+GSL GD GFDP GL + E L++
Sbjct: 61 SPEYLDGSLVGDYGFDPFGLGKPAEYLQF 89
>TAIR|locus:2089139 [details] [associations]
symbol:LHCB2.3 "photosystem II light harvesting complex
gene 2.3" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0015979 "photosynthesis"
evidence=ISS] [GO:0016020 "membrane" evidence=IEA] [GO:0016168
"chlorophyll binding" evidence=ISS] [GO:0030076 "light-harvesting
complex" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009637
"response to blue light" evidence=IEP;RCA] [GO:0010114 "response to
red light" evidence=IEP;RCA] [GO:0010218 "response to far red
light" evidence=IEP;RCA] [GO:0005794 "Golgi apparatus"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0009744 "response to sucrose stimulus" evidence=RCA]
[GO:0010155 "regulation of proton transport" evidence=RCA]
[GO:0042631 "cellular response to water deprivation" evidence=RCA]
InterPro:IPR001344 Pfam:PF00504 EMBL:CP002686 GO:GO:0009941
GO:GO:0009637 GO:GO:0010218 GO:GO:0010114 GO:GO:0009535
EMBL:AB018114 GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
HOGENOM:HOG000238032 ProtClustDB:PLN00025 UniGene:At.63397
KO:K08913 EMBL:AF134125 EMBL:AF370557 EMBL:BT006298 IPI:IPI00549108
PIR:T52322 RefSeq:NP_189406.1 UniGene:At.71997 UniGene:At.8025
ProteinModelPortal:Q9XF87 SMR:Q9XF87 STRING:Q9XF87 PRIDE:Q9XF87
EnsemblPlants:AT3G27690.1 GeneID:822391 KEGG:ath:AT3G27690
TAIR:At3g27690 InParanoid:Q9XF87 OMA:QHSSFAG PhylomeDB:Q9XF87
Genevestigator:Q9XF87 Uniprot:Q9XF87
Length = 266
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 76/189 (40%), Positives = 100/189 (52%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G PE+ +K G+
Sbjct: 66 TPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVK 125
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F+ ++ L H I W + G + I
Sbjct: 126 FGEAVWFKAG-SQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGGGPLGE 184
Query: 176 PNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLL 231
+ YPGG F+PLN A EA K KEL NGRLAM + GF VQ VTGKGP ENL
Sbjct: 185 GLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLF 244
Query: 232 QHISDPWHN 240
HI+DP N
Sbjct: 245 DHIADPVAN 253
>TAIR|locus:2044988 [details] [associations]
symbol:LHCB2.2 "photosystem II light harvesting complex
gene 2.2" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0015979 "photosynthesis"
evidence=ISS] [GO:0016020 "membrane" evidence=IEA] [GO:0016168
"chlorophyll binding" evidence=ISS] [GO:0030076 "light-harvesting
complex" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0005774
"vacuolar membrane" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] InterPro:IPR001344
Pfam:PF00504 GO:GO:0005774 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0009941 GO:GO:0009535 GO:GO:0010287 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 HOGENOM:HOG000238032
ProtClustDB:PLN00025 EMBL:AC007211 EMBL:AF134123 EMBL:AY054218
EMBL:AY062563 EMBL:AY066036 EMBL:AY093372 IPI:IPI00542481
PIR:T52324 RefSeq:NP_178582.1 UniGene:At.48420 UniGene:At.63397
UniGene:At.72525 ProteinModelPortal:Q9S7J7 SMR:Q9S7J7 IntAct:Q9S7J7
STRING:Q9S7J7 PaxDb:Q9S7J7 PRIDE:Q9S7J7 ProMEX:Q9S7J7
EnsemblPlants:AT2G05070.1 GeneID:815055 KEGG:ath:AT2G05070
TAIR:At2g05070 eggNOG:NOG312402 InParanoid:Q9S7J7 KO:K08913
OMA:AFATKYT PhylomeDB:Q9S7J7 ArrayExpress:Q9S7J7
Genevestigator:Q9S7J7 Uniprot:Q9S7J7
Length = 265
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 75/193 (38%), Positives = 102/193 (52%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G PE+ +K G+
Sbjct: 65 TPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVK 124
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
W+ AG ++ F+ ++ L H I ++ V + Y +
Sbjct: 125 FGEAVWFKAG-SQIFSEGGLDYLGNPNLIHAQSILAIWAVQ----VVLMGFIEGYRIGGG 179
Query: 178 EVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPF 227
+G YPGG F+PLN A EA K KEL NGRLAM + GF VQ VTGKGP
Sbjct: 180 PLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
Query: 228 ENLLQHISDPWHN 240
ENL H++DP N
Sbjct: 240 ENLFDHLADPVAN 252
>TAIR|locus:2042148 [details] [associations]
symbol:LHCB2.1 "photosystem II light harvesting complex
gene 2.1" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0015979 "photosynthesis"
evidence=ISS] [GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168
"chlorophyll binding" evidence=ISS] [GO:0030076 "light-harvesting
complex" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP] [GO:0010114 "response to red light" evidence=IEP]
[GO:0010218 "response to far red light" evidence=IEP] [GO:0005794
"Golgi apparatus" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009941 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 GO:GO:0009535 GO:GO:0010287
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
HOGENOM:HOG000238032 ProtClustDB:PLN00025 UniGene:At.48420
UniGene:At.63397 KO:K08913 EMBL:AC007443 EMBL:AY052275
EMBL:AY052348 EMBL:BT001933 IPI:IPI00535929 RefSeq:NP_178585.1
ProteinModelPortal:Q9SHR7 SMR:Q9SHR7 STRING:Q9SHR7 PRIDE:Q9SHR7
EnsemblPlants:AT2G05100.1 GeneID:815058 KEGG:ath:AT2G05100
TAIR:At2g05100 InParanoid:Q9SHR7 OMA:MAASAIQ PhylomeDB:Q9SHR7
ArrayExpress:Q9SHR7 Genevestigator:Q9SHR7 Uniprot:Q9SHR7
Length = 265
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 75/193 (38%), Positives = 102/193 (52%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G PE+ +K G+
Sbjct: 65 TPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVK 124
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
W+ AG ++ F+ ++ L H I ++ V + Y +
Sbjct: 125 FGEAVWFKAG-SQIFSEGGLDYLGNPNLIHAQSILAIWAVQ----VVLMGFIEGYRIGGG 179
Query: 178 EVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPF 227
+G YPGG F+PLN A EA K KEL NGRLAM + GF VQ VTGKGP
Sbjct: 180 PLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
Query: 228 ENLLQHISDPWHN 240
ENL H++DP N
Sbjct: 240 ENLFDHLADPVAN 252
>TAIR|locus:2149765 [details] [associations]
symbol:LHCB4.1 "light harvesting complex photosystem II"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0010218 "response to far red light"
evidence=IEP;RCA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009644 "response
to high light intensity" evidence=RCA] [GO:0009744 "response to
sucrose stimulus" evidence=RCA] [GO:0010155 "regulation of proton
transport" evidence=RCA] [GO:0019684 "photosynthesis, light
reaction" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0009637 GO:GO:0010218 GO:GO:0010114 GO:GO:0018298
GO:GO:0009535 GO:GO:0010287 HOGENOM:HOG000238033 GO:GO:0009522
GO:GO:0009523 GO:GO:0016168 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 eggNOG:NOG319330 KO:K08915 EMBL:X71878
EMBL:AL161946 EMBL:AF370474 EMBL:AY048262 EMBL:AY048300
EMBL:AY057641 EMBL:AY059861 EMBL:AY081680 EMBL:AY092980
EMBL:AY133566 EMBL:BT000363 IPI:IPI00542715 PIR:S33443
RefSeq:NP_195773.1 UniGene:At.23015 UniGene:At.23659
UniGene:At.23691 UniGene:At.24017 UniGene:At.75201
ProteinModelPortal:Q07473 SMR:Q07473 IntAct:Q07473 STRING:Q07473
PaxDb:Q07473 PRIDE:Q07473 EnsemblPlants:AT5G01530.1 GeneID:830325
KEGG:ath:AT5G01530 TAIR:At5g01530 InParanoid:Q07473 OMA:PLHTTIF
PhylomeDB:Q07473 ProtClustDB:PLN00187 Genevestigator:Q07473
GermOnline:AT5G01530 Uniprot:Q07473
Length = 290
Score = 217 (81.4 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 61/165 (36%), Positives = 85/165 (51%)
Query: 90 QAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYV 149
+ EL++ RWAML +G L E T G+ W DAGK E SS ++ + + F +
Sbjct: 138 ECELIHGRWAMLATLGALSVEWLT--GVT----WQDAGKVELVDGSS--YLGQPLPFS-I 188
Query: 150 EIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFA--P--TDEAKEKELAN 204
W ++ G + + L + YPGG F+PL A P T + + E+ +
Sbjct: 189 STLIWIEVLVIGYIEFQ---RNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKH 245
Query: 205 GRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSGN 249
RLAM+AFLGF VQ TGKGP N H+SDP H TI+ T S +
Sbjct: 246 ARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290
Score = 104 (41.7 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQA 91
W PG SP +L+GSL GD GFDP GL + E L++ + +
Sbjct: 58 WYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDS 96
Score = 51 (23.0 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 198 KEKELANGRLAMLAFLGFIVQHNVTG 223
+E EL +GR AMLA LG + +TG
Sbjct: 137 RECELIHGRWAMLATLGALSVEWLTG 162
>TAIR|locus:2011691 [details] [associations]
symbol:AT1G76570 species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM] [GO:0009765
"photosynthesis, light harvesting" evidence=IEA] [GO:0015979
"photosynthesis" evidence=ISS] [GO:0016020 "membrane" evidence=IEA]
[GO:0016168 "chlorophyll binding" evidence=ISS] [GO:0030076
"light-harvesting complex" evidence=ISS] [GO:0009637 "response to
blue light" evidence=IEP] [GO:0010218 "response to far red light"
evidence=IEP] [GO:0010264 "myo-inositol hexakisphosphate
biosynthetic process" evidence=RCA] [GO:0015996 "chlorophyll
catabolic process" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0016020
GO:GO:0009637 GO:GO:0010218 EMBL:AC015450 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 HOGENOM:HOG000238032
IPI:IPI00528080 PIR:G96793 RefSeq:NP_177783.1 UniGene:At.34640
ProteinModelPortal:Q9C9K1 SMR:Q9C9K1 PaxDb:Q9C9K1 PRIDE:Q9C9K1
EnsemblPlants:AT1G76570.1 GeneID:843990 KEGG:ath:AT1G76570
TAIR:At1g76570 eggNOG:NOG237807 InParanoid:Q9C9K1 KO:K14172
OMA:DYGFDIA PhylomeDB:Q9C9K1 ProtClustDB:PLN00171
Genevestigator:Q9C9K1 Uniprot:Q9C9K1
Length = 327
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 81/211 (38%), Positives = 113/211 (53%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YL G LPGD GFD GL +D Y E++++RWAML +G L+PEVF G +
Sbjct: 123 PPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVFDLTGTFH 182
Query: 120 --APQWYDAGKA-------EYF-------ASSSTLFVI---EFILFHYVEIRRWQDIKNP 160
P W+ G + EY A S + VI + +L E R+ I+
Sbjct: 183 FAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYCGIEA- 241
Query: 161 GSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFA--PT--DEAKEKELANGRLAMLAFLGF 215
+P+ Y P ++ YPGG +F+PLN + P ++ K KE+ NGRLAM+A+LGF
Sbjct: 242 ----LEPL-GIYL--PGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGF 294
Query: 216 IVQHNVTGKGPFENLLQHISDPWHNTIVQTL 246
Q TGKGP +NL+ H+SDP HN ++ L
Sbjct: 295 YAQAAFTGKGPVQNLVDHVSDPLHNNLIAML 325
>TAIR|locus:2162540 [details] [associations]
symbol:LHCB3 "light-harvesting chlorophyll B-binding
protein 3" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0015979 "photosynthesis"
evidence=ISS;IMP] [GO:0016020 "membrane" evidence=IEA] [GO:0030076
"light-harvesting complex" evidence=ISS] [GO:0005198 "structural
molecule activity" evidence=IDA] [GO:0009535 "chloroplast thylakoid
membrane" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA]
InterPro:IPR001344 Pfam:PF00504 EMBL:CP002688 GO:GO:0005198
EMBL:AB010695 GO:GO:0009535 UniGene:At.49175 GO:GO:0015979
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
UniGene:At.10812 UniGene:At.32199 UniGene:At.66422
HOGENOM:HOG000238032 ProtClustDB:PLN00025 UniGene:At.70236
UniGene:At.21173 EMBL:AF134126 EMBL:AF143691 EMBL:AF361858
EMBL:AF372917 EMBL:AY057735 IPI:IPI00532626 PIR:T52318
RefSeq:NP_200238.1 ProteinModelPortal:Q9S7M0 SMR:Q9S7M0
STRING:Q9S7M0 PRIDE:Q9S7M0 EnsemblPlants:AT5G54270.1 GeneID:835515
KEGG:ath:AT5G54270 TAIR:At5g54270 InParanoid:Q9S7M0 KO:K08914
OMA:ADDPVTF PhylomeDB:Q9S7M0 Genevestigator:Q9S7M0 Uniprot:Q9S7M0
Length = 265
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 74/192 (38%), Positives = 99/192 (51%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK-IGI 117
+P+YL G PGD G+D GL+ DPE E+++ RWAMLG G + PEV K + +
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRV 122
Query: 118 -INAPQWYDAGKAEYFASSSTLFVIEFILFH---YVEIRRWQDIKNPGSVNQDPIFKQYS 173
P W+ AG ++ F+ ++ L H + + +Q I G V I
Sbjct: 123 DFKEPVWFKAG-SQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILM-GLVEGFRINGLDG 180
Query: 174 LPPNEVGYPGG-IFNPLNFA--PTD--EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFE 228
+ YPGG F+PL A P E K KE+ NGRLAM + GF VQ VTGKGP E
Sbjct: 181 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
Query: 229 NLLQHISDPWHN 240
NLL H+ +P N
Sbjct: 241 NLLDHLDNPVAN 252
>TAIR|locus:2047751 [details] [associations]
symbol:LHCB4.3 "light harvesting complex photosystem II"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009637
"response to blue light" evidence=IEP;RCA] [GO:0010114 "response to
red light" evidence=IEP;RCA] [GO:0010218 "response to far red
light" evidence=IEP;RCA] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=RCA]
InterPro:IPR001344 Pfam:PF00504 GO:GO:0016021 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 HOGENOM:HOG000238033
GO:GO:0009522 GO:GO:0009523 GO:GO:0016168 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 eggNOG:NOG319330 KO:K08915
OMA:TTLIWIE ProtClustDB:PLN00187 EMBL:AF134128 EMBL:AY070392
EMBL:AY096735 EMBL:AY088398 IPI:IPI00538445 PIR:T52316
RefSeq:NP_181539.1 UniGene:At.24469 ProteinModelPortal:Q9S7W1
SMR:Q9S7W1 PaxDb:Q9S7W1 PRIDE:Q9S7W1 EnsemblPlants:AT2G40100.1
GeneID:818599 KEGG:ath:AT2G40100 TAIR:At2g40100 InParanoid:Q9S7W1
PhylomeDB:Q9S7W1 Genevestigator:Q9S7W1 GermOnline:AT2G40100
Uniprot:Q9S7W1
Length = 276
Score = 179 (68.1 bits), Expect = 3.4e-22, Sum P(2) = 3.4e-22
Identities = 55/143 (38%), Positives = 73/143 (51%)
Query: 90 QAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFV-IEFILFHY 148
+ EL++ RWAMLG +G + E T I W DAGK E SS L + F L
Sbjct: 139 ECELIHGRWAMLGTLGAIAVEALTGIA------WQDAGKVELVEGSSYLGQPLPFSLTTL 192
Query: 149 VEIRRWQDIKNPGSVNQDPIFKQYS-LPPNEVGYPGGIFNPLNFA--PT--DEAKEKELA 203
+ W ++ G + F++ S L P + YPGG F+PL A P D K E+
Sbjct: 193 I----WIEVLVVGYIE----FQRNSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIK 244
Query: 204 NGRLAMLAFLGFIVQHNVTGKGP 226
+ RLAM+AFL F +Q TGKGP
Sbjct: 245 HSRLAMVAFLIFALQAAFTGKGP 267
Score = 108 (43.1 bits), Expect = 3.4e-22, Sum P(2) = 3.4e-22
Identities = 34/98 (34%), Positives = 50/98 (51%)
Query: 1 MATVTTQASAAVF-------RPCASKSRFLTGSS-GKLNREVALKPVSSSASFKVEAKGE 52
MAT T A++ +F RP + + G S GK ++ A P S +V+ G+
Sbjct: 1 MATTTAAAASGIFGIRIQDPRPGTGRVQARFGFSFGK--KKPAPPPKKSR---QVQDDGD 55
Query: 53 ---WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKW 87
W PG P +L+GS+ GD GFDP GL + E L++
Sbjct: 56 RLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQY 93
Score = 53 (23.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 198 KEKELANGRLAMLAFLGFIVQHNVTG 223
+E EL +GR AML LG I +TG
Sbjct: 138 RECELIHGRWAMLGTLGAIAVEALTG 163
>TAIR|locus:2036209 [details] [associations]
symbol:LHCB6 "light harvesting complex photosystem II
subunit 6" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0016020 "membrane" evidence=IEA;IDA]
[GO:0016168 "chlorophyll binding" evidence=ISS] [GO:0015979
"photosynthesis" evidence=IMP;NAS] [GO:0009783 "photosystem II
antenna complex" evidence=NAS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0010196 "nonphotochemical quenching"
evidence=IMP] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0006816 "calcium ion transport" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0009651 "response to salt
stress" evidence=RCA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0035304 "regulation of protein dephosphorylation"
evidence=RCA] InterPro:IPR001344 Pfam:PF00504 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009941 GO:GO:0009535 GO:GO:0010287
GO:GO:0015979 EMBL:AC034256 HOGENOM:HOG000238033 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 GO:GO:0009783 GO:GO:0010196
UniGene:At.25300 EMBL:AF332425 EMBL:AY065113 EMBL:AY081644
IPI:IPI00524194 PIR:F86292 RefSeq:NP_173034.1 UniGene:At.15569
UniGene:At.72611 UniGene:At.74824 UniGene:At.74983
ProteinModelPortal:Q9LMQ2 SMR:Q9LMQ2 STRING:Q9LMQ2 PaxDb:Q9LMQ2
PRIDE:Q9LMQ2 DNASU:838151 EnsemblPlants:AT1G15820.1 GeneID:838151
KEGG:ath:AT1G15820 TAIR:At1g15820 eggNOG:NOG277110
InParanoid:Q9LMQ2 KO:K08917 OMA:SWIPAFK PhylomeDB:Q9LMQ2
ProtClustDB:PLN00170 ArrayExpress:Q9LMQ2 Genevestigator:Q9LMQ2
Uniprot:Q9LMQ2
Length = 258
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 69/209 (33%), Positives = 110/209 (52%)
Query: 43 ASFKVEAKGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNS 96
A+ + K W+P + P +L+GSLPGD GFDPLGL +DP LKWY +AEL++
Sbjct: 47 AAAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHG 106
Query: 97 RWAMLGVVGMLLPEVFTKIGIINAPQWYDAG-KAEYFA--SSSTLFVIEFILFHYVEIRR 153
RWAM V+G+ + + ++ + W++AG + + A S +L + +L +VE +R
Sbjct: 107 RWAMAAVLGIFVGQAWSGVA------WFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKR 160
Query: 154 WQDIKNPGSVNQD---PIFK---QYSLPPNEVGYPGG-IFNPLNFA---------PTDEA 197
W D NP S + + P K ++ + GYPGG F+PL A P E
Sbjct: 161 WVDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEK 220
Query: 198 KEK-ELANGRLAMLAFLGFIVQHNVTGKG 225
E+ +LA + + LA + ++ + G+G
Sbjct: 221 LERLKLAEIKHSRLAMVAMLIFYFEAGQG 249
>UNIPROTKB|Q93WD2 [details] [associations]
symbol:Lhcb4 "Chlorophyll a-b binding protein CP29"
species:3055 "Chlamydomonas reinhardtii" [GO:0009503 "thylakoid
light-harvesting complex" evidence=IDA] [GO:0009765
"photosynthesis, light harvesting" evidence=NAS] [GO:0016168
"chlorophyll binding" evidence=NAS] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 GO:GO:0046872 GO:GO:0009941 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 GO:GO:0018298 GO:GO:0010287
GO:GO:0009522 GO:GO:0009523 GO:GO:0016168 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 EMBL:AB051207 EMBL:AB051211
EMBL:AY171230 RefSeq:XP_001697193.1 UniGene:Cre.4370
ProteinModelPortal:Q93WD2 DIP:DIP-48401N STRING:Q93WD2 PRIDE:Q93WD2
GeneID:5722671 KEGG:cre:CHLREDRAFT_184810 eggNOG:NOG319330
KO:K08915 OMA:TTLIWIE ProtClustDB:CLSN2922608
BioCyc:MetaCyc:CHLREDRAFT_184810-MONOMER GO:GO:0009503
Uniprot:Q93WD2
Length = 280
Score = 167 (63.8 bits), Expect = 7.6e-20, Sum P(2) = 7.6e-20
Identities = 48/156 (30%), Positives = 76/156 (48%)
Query: 90 QAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYV 149
+ EL++ RWAML +G L+ E T G+ W +AGK E +S + F + +
Sbjct: 135 ECELIHGRWAMLACLGALVAEATT--GV----SWVEAGKVELDGASYAGLSLPFSITQLI 188
Query: 150 EIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA-----KEKELAN 204
W ++ G ++ P + YPGG+F+PL A DE K E+ +
Sbjct: 189 ----WIEVILVGGAE---FYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKH 241
Query: 205 GRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 240
RLAM++F G+ VQ TG+G +L + +D +N
Sbjct: 242 ARLAMVSFFGYGVQALSTGEGALGSLAK-FADGLNN 276
Score = 112 (44.5 bits), Expect = 7.6e-20, Sum P(2) = 7.6e-20
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPE 83
K + WLP P +L+GSLPGD GFDPLGL++ E
Sbjct: 46 KYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSE 83
Score = 59 (25.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 198 KEKELANGRLAMLAFLGFIVQHNVTG 223
+E EL +GR AMLA LG +V TG
Sbjct: 134 RECELIHGRWAMLACLGALVAEATTG 159
>TAIR|locus:2146544 [details] [associations]
symbol:AT5G28450 species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM] [GO:0009765
"photosynthesis, light harvesting" evidence=IEA] [GO:0015979
"photosynthesis" evidence=ISS] [GO:0016020 "membrane" evidence=IEA]
[GO:0016168 "chlorophyll binding" evidence=ISS] [GO:0030076
"light-harvesting complex" evidence=ISS] InterPro:IPR001344
Pfam:PF00504 EMBL:CP002688 GO:GO:0009507 GO:GO:0016020
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
IPI:IPI00523588 RefSeq:NP_198197.1 UniGene:At.46743
UniGene:At.55066 ProteinModelPortal:F4K8I1 SMR:F4K8I1 DNASU:832932
EnsemblPlants:AT5G28450.1 GeneID:832932 KEGG:ath:AT5G28450
KO:K08908 PhylomeDB:F4K8I1 Uniprot:F4K8I1
Length = 173
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 48/96 (50%), Positives = 61/96 (63%)
Query: 153 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF---APTD--EAKEKELANGR 206
R DI PGSVN DP+F L ++GYPGG+ F+PL + +PT E + KE+ NGR
Sbjct: 71 RAPDIIKPGSVNTDPVFPNNKLTGTDIGYPGGLWFDPLGWGSGSPTKIKELRTKEIKNGR 130
Query: 207 LAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTI 242
LAMLA +G QH TG GP +NL H++DP H TI
Sbjct: 131 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATI 166
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.135 0.415 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 249 249 0.00080 114 3 11 22 0.47 33
32 0.46 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 601 (64 KB)
Total size of DFA: 196 KB (2110 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.53u 0.32s 20.85t Elapsed: 00:00:01
Total cpu time: 20.54u 0.32s 20.86t Elapsed: 00:00:01
Start: Fri May 10 21:11:33 2013 End: Fri May 10 21:11:34 2013