BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025674
(249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 440 bits (1132), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/252 (87%), Positives = 228/252 (90%), Gaps = 4/252 (1%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPV--SSSASFKVEAK-GEWLPGL 57
MATVTTQASAA+F PC KSRFL GSSGKLNR VA +PV S SASFKVEAK GEWLPGL
Sbjct: 1 MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGL 60
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
ASP YL GSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GMLLPEVFT IGI
Sbjct: 61 ASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI 120
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
IN P+WY AGK EYFASSSTLFVIEFIL HYVEIRRWQDIKNPGSVNQDPIFKQYSLP
Sbjct: 121 INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAG 180
Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 237
EVGYPGGIFNPLNFAPT EAKEKE+ANGRL MLAFLGFI+QHNVTGKGPF+NLLQHISDP
Sbjct: 181 EVGYPGGIFNPLNFAPTLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDP 239
Query: 238 WHNTIVQTLSGN 249
WHNTIVQTL GN
Sbjct: 240 WHNTIVQTLGGN 251
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 313 bits (802), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 149/165 (90%), Positives = 155/165 (93%)
Query: 82 PENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVI 141
PENL+W+VQAELVN RWAMLGV GMLLPEVFT IGIIN P+WY AGK EYFASSSTLFVI
Sbjct: 1 PENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVI 60
Query: 142 EFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKE 201
EFIL HYVEIRRWQDIKNPGSVNQDPIFKQYSLP EVGYPGGIFNPLNFAPT EAKEKE
Sbjct: 61 EFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKE 120
Query: 202 LANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTL 246
+ANGRLAMLAFLGFI+QHNVTGKGPF+NLLQHISDPWHNTIVQTL
Sbjct: 121 IANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 165
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 311 bits (796), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 150/167 (89%), Positives = 156/167 (93%), Gaps = 1/167 (0%)
Query: 78 LAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSST 137
LAEDPENL+W+VQAELVN RWAMLGV GMLLPEVFT IGIIN P+WY AGK EYFASSST
Sbjct: 1 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSST 60
Query: 138 LFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA 197
LFVIEFIL HYVEIRRWQDIKNPGSVNQDPIFKQYSLP EVGYPGGIFNPLNFAPT EA
Sbjct: 61 LFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEA 120
Query: 198 KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQ 244
KEKE+ANGRL MLAFLGFI+QHNVTGKGPF+NLLQHISDPWHNTIVQ
Sbjct: 121 KEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQ 166
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 220 bits (561), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 149/244 (61%), Gaps = 13/244 (5%)
Query: 15 PCASKSRFLTGSSGKLNREVA----LKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGD 70
P + FL G K+N A ++ S+ + + W PG P +L+GSLPGD
Sbjct: 26 PSGTSKAFL-GRKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLDGSLPGD 84
Query: 71 NGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAE 130
GFDPLGL DPE+L+W VQAELV+SRWAMLG G+ +PE TK+GI+N P WY AG+ E
Sbjct: 85 FGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQE 144
Query: 131 YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPL 189
YF ++TLF++E + + E RRW DI NPG VN DPIF L +VGYPGG+ F+PL
Sbjct: 145 YFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPL 204
Query: 190 NFAPTD-----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLL-QHISDPWHNTIV 243
+ E + KE+ NGRLAMLA +G QH TG GP +NL H++DP H TI
Sbjct: 205 GWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP-HATIF 263
Query: 244 QTLS 247
+
Sbjct: 264 AAFT 267
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 215 bits (547), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 102/186 (54%), Positives = 129/186 (69%), Gaps = 6/186 (3%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P +L+GSLPGD GFDPLGL+ DPE+L+W VQAELV+SRWAMLG G+ +PE TK+GI+N
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILN 60
Query: 120 APQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEV 179
P WY AG+ EYF ++TLF++E + + E RRW DI NPG VN DPIF L +V
Sbjct: 61 TPSWYTAGEQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDV 120
Query: 180 GYPGGI-FNPLNFAPTD-----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQH 233
GYPGG+ F+PL + E + KE+ NGRLAMLA +G QH TG GP +NL H
Sbjct: 121 GYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAH 180
Query: 234 ISDPWH 239
++DP H
Sbjct: 181 LADPGH 186
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 188 bits (477), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 114/173 (65%), Gaps = 6/173 (3%)
Query: 81 DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFV 140
DPE+L+W VQAELV+SRWAMLG G+ +PE TK+GI+N P WY AG+ EYF ++TLF+
Sbjct: 2 DPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFI 61
Query: 141 IEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAPTD---- 195
+E + + E RRW DI NPG VN DPIF L +VGYPGG+ F+PL +
Sbjct: 62 VELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKL 121
Query: 196 -EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLS 247
E + KE+ NGRLAMLA +G QH TG GP +NL H++DP H TI +
Sbjct: 122 KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFT 174
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 164 bits (414), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 110/272 (40%), Positives = 145/272 (53%), Gaps = 39/272 (14%)
Query: 3 TVTTQASAAVFRPCASKSRF-LTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPT 61
T + +A+ P + +S F + + L + A PV + + W S +
Sbjct: 13 TFSAEAARQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPL-----WFASKQSLS 67
Query: 62 YLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKI 115
YL+GSLPGD GFDPLGL+ DPE KW E++N R+AMLG VG + PE+ K
Sbjct: 68 YLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126
Query: 116 GII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD 166
G+I A W+ AG Y+A S TLFV E L + E RR+QD PGS+
Sbjct: 127 GLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMG-- 184
Query: 167 PIFKQYSLP-------PNEVGYPGG-IFNPLNFAPTDEA----KEKELANGRLAMLAFLG 214
KQY L E YPGG FNPL F +++ K KE+ NGRLAMLA LG
Sbjct: 185 ---KQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILG 241
Query: 215 FIVQHNVTGKGPFENLLQHISDPWHNTIVQTL 246
+ VQ VTG GP++NLL H++DP HN I+ +L
Sbjct: 242 YFVQALVTGVGPYQNLLDHLTDPVHNNILTSL 273
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 241
Score = 154 bits (390), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 119/210 (56%), Gaps = 30/210 (14%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
++ W+PG P YL+GS PGD GFDPLGL E P NL+ Y ++EL++ RWAML V G
Sbjct: 41 RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG 100
Query: 106 MLLPEVFTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDI 157
+L+PE + A +W G+A Y + T+ IEF+ +VE +R
Sbjct: 101 ILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR---- 156
Query: 158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGRLAMLAFL 213
S+ +DP K+ YPGG F+PL ++ +E K KE+ NGRLA+LAF+
Sbjct: 157 ----SMEKDPEKKK---------YPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFV 203
Query: 214 GFIVQHNV-TGKGPFENLLQHISDPWHNTI 242
GF VQ + G GP ENL H++DPWHN I
Sbjct: 204 GFCVQQSAYPGTGPLENLATHLADPWHNNI 233
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 116/202 (57%), Gaps = 30/202 (14%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
+PG P YL+GS PGD GFDPLGL E P NL+ Y ++EL++ RWAML V G+L+PE
Sbjct: 1 MPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG 60
Query: 114 KIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQ 165
+ A +W G+A Y + T+ IEF+ +VE +R S+ +
Sbjct: 61 YGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR--------SMEK 112
Query: 166 DPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGRLAMLAFLGFIVQHNV 221
DP K+ YPGG F+PL ++ +E K KE+ NGRLA+LAF+GF VQ +
Sbjct: 113 DPEKKK---------YPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSA 163
Query: 222 -TGKGPFENLLQHISDPWHNTI 242
G GP ENL H++DPWHN I
Sbjct: 164 YPGTGPLENLATHLADPWHNNI 185
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 106/187 (56%), Gaps = 30/187 (16%)
Query: 66 SLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQW-- 123
S PGD GFDPLGL E P NL+ Y ++EL++ RWAML V G+L+PE + A +W
Sbjct: 1 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 60
Query: 124 YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
G+A Y + T+ IEF+ +VE +R S+ +DP K+
Sbjct: 61 LPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR--------SMEKDPEKKK------ 106
Query: 178 EVGYPGGIFNPLNFAPT----DEAKEKELANGRLAMLAFLGFIVQHNV-TGKGPFENLLQ 232
YPGG F+PL ++ +E K KE+ NGRLA+LAF+GF VQ + G GP ENL
Sbjct: 107 ---YPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 163
Query: 233 HISDPWH 239
H++DPWH
Sbjct: 164 HLADPWH 170
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 102/202 (50%), Gaps = 34/202 (16%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 32 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 91
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + S ++ + IL VE R P
Sbjct: 92 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLG 149
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQ 218
DP+ YPGG F+PL A EA K KEL NGRLAM + GF VQ
Sbjct: 150 EVVDPL------------YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQ 197
Query: 219 HNVTGKGPFENLLQHISDPWHN 240
VTGKGP ENL H++DP +N
Sbjct: 198 AIVTGKGPLENLADHLADPVNN 219
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 102/202 (50%), Gaps = 34/202 (16%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 32 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVK 91
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + S ++ + IL VE R P
Sbjct: 92 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLG 149
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQ 218
DP+ YPGG F+PL A EA K KEL NGRLAM + GF VQ
Sbjct: 150 EVVDPL------------YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQ 197
Query: 219 HNVTGKGPFENLLQHISDPWHN 240
VTGKGP ENL H++DP +N
Sbjct: 198 AIVTGKGPLENLADHLADPVNN 219
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 100/202 (49%), Gaps = 34/202 (16%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 32 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 91
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + S ++ + IL VE R P
Sbjct: 92 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLG 149
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQ 218
DP+ YPGG F+PL A EA K KE+ NGRLAM + GF VQ
Sbjct: 150 EVVDPL------------YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 197
Query: 219 HNVTGKGPFENLLQHISDPWHN 240
VTGKGP ENL H++DP +N
Sbjct: 198 AIVTGKGPLENLADHLADPVNN 219
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 105/250 (42%), Gaps = 81/250 (32%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKW------------------------- 87
W PG +P YL+GSL GD GFDP GL + E L++
Sbjct: 14 WYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESA 73
Query: 88 ------------------YVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKA 129
+ + EL++ RWAML +G L E T I W DAGK
Sbjct: 74 DVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGI------TWQDAGKV 127
Query: 130 EYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNE 178
E SS TL IE ++ Y+E +R ++ +
Sbjct: 128 ELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELDTEKRL--------------- 172
Query: 179 VGYPGGIFNPLNFAPTDEAKE----KELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHI 234
YPGG F+PL A E K E+ + RLAM+ FLGF VQ VTGKGP N + H+
Sbjct: 173 --YPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHL 230
Query: 235 SDPWHNTIVQ 244
SDP H TI+
Sbjct: 231 SDPLHTTILD 240
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 92/170 (54%), Gaps = 26/170 (15%)
Query: 87 WYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQ---WYD------AGKAEYFASSST 137
W E++N R+AMLG G + PE+ K G+I A W+ AG Y+A + T
Sbjct: 1 WLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYT 60
Query: 138 LFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP-------PNEVGYPGG-IFNPL 189
LFV+E L + E RR QD NPGS+ KQY L YPGG FNPL
Sbjct: 61 LFVLEMALMGFAEHRRLQDWYNPGSMG-----KQYFLGLEKGLAGSGNPAYPGGPFFNPL 115
Query: 190 NFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHIS 235
F + E K KE+ NGRLAMLA LG+ +Q VTG GP++NLL H++
Sbjct: 116 GFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLA 165
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G +P Y PG F+PLG +D ++LK E+ N R AML ++G + + T
Sbjct: 98 LAGSGNPAY-----PGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVT 152
Query: 114 KIG 116
+G
Sbjct: 153 GVG 155
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 92/176 (52%), Gaps = 32/176 (18%)
Query: 81 DPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---NAPQWYD------ 125
DPE +W E++N R+AMLG VG + PE K+G+I A W+
Sbjct: 2 DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPP 61
Query: 126 AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP-------PNE 178
AG Y+A + TLFV+E L + E RR+QD PGS+ KQY L
Sbjct: 62 AGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMG-----KQYFLGLEKGFGGSGN 116
Query: 179 VGYPGG-IFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFEN 229
YPGG FNPL F + E K KE+ NGRLAMLA LG+ +Q VTG GP++N
Sbjct: 117 PAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQN 172
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 64 NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
N + PG F+PLG +D ++LK E+ N R AML ++G + + T +G
Sbjct: 116 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVG 168
>pdb|3OT5|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
pdb|3OT5|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
pdb|3OT5|C Chain C, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
pdb|3OT5|D Chain D, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
Length = 403
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 171 QYSLPPNEVGYP-GGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFEN 229
+YS P E+ G+ ++F+PT +AKE LA G+ F VTG +
Sbjct: 153 KYSPFPEEMNRQLTGVMADIHFSPTKQAKENLLAEGKDPATIF--------VTGNTAIDA 204
Query: 230 LLQHISDPWHNTIVQTLSGN 249
L + +H+ I++ L N
Sbjct: 205 LKTTVQKDYHHPILENLGDN 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,047,590
Number of Sequences: 62578
Number of extensions: 357034
Number of successful extensions: 754
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 684
Number of HSP's gapped (non-prelim): 23
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)