Query 025674
Match_columns 249
No_of_seqs 218 out of 1231
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:18:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00101 Photosystem I light-h 100.0 6.1E-74 1.3E-78 513.4 19.2 247 1-247 1-250 (250)
2 PLN00098 light-harvesting comp 100.0 9.7E-67 2.1E-71 470.7 20.1 202 48-249 60-267 (267)
3 PLN00097 photosystem I light h 100.0 1.1E-66 2.4E-71 464.9 18.3 196 48-243 42-243 (244)
4 PLN00147 light-harvesting comp 100.0 4.9E-65 1.1E-69 456.7 17.1 203 46-248 41-251 (252)
5 PLN00099 light-harvesting comp 100.0 3.9E-61 8.5E-66 429.8 17.0 214 1-248 1-238 (243)
6 PLN00100 light-harvesting comp 100.0 4.5E-61 9.9E-66 428.7 15.7 180 44-246 29-209 (246)
7 PLN00048 photosystem I light h 100.0 8.7E-61 1.9E-65 431.5 14.9 201 47-248 39-261 (262)
8 PLN00187 photosystem II light- 100.0 1.5E-59 3.2E-64 427.0 15.8 179 47-248 49-286 (286)
9 PLN00025 photosystem II light 100.0 1.5E-57 3.2E-62 410.1 15.5 186 47-246 48-255 (262)
10 PLN00171 photosystem light-ha 100.0 3.9E-57 8.5E-62 415.7 15.2 194 46-247 104-323 (324)
11 PLN00170 photosystem II light- 100.0 1.2E-53 2.5E-58 383.1 15.3 177 48-231 49-254 (255)
12 PLN00089 fucoxanthin-chlorophy 100.0 2.4E-41 5.2E-46 297.0 13.1 158 51-228 38-208 (209)
13 PF00504 Chloroa_b-bind: Chlor 100.0 6.1E-41 1.3E-45 280.4 13.8 146 59-220 1-156 (156)
14 PLN00120 fucoxanthin-chlorophy 100.0 2.8E-35 6.1E-40 257.5 12.9 147 54-227 37-198 (202)
15 PLN00147 light-harvesting comp 99.6 2.1E-15 4.5E-20 136.2 4.3 59 60-118 172-230 (252)
16 PLN00048 photosystem I light h 99.5 5.3E-15 1.2E-19 134.2 4.3 54 64-117 186-239 (262)
17 PLN00089 fucoxanthin-chlorophy 99.5 1E-14 2.2E-19 128.6 4.4 53 65-117 153-206 (209)
18 PLN00025 photosystem II light 99.5 3.5E-14 7.5E-19 128.8 4.1 55 63-118 182-236 (262)
19 PLN00187 photosystem II light- 99.5 3.3E-14 7.2E-19 130.2 3.7 55 64-118 211-265 (286)
20 PLN00101 Photosystem I light-h 99.4 6.9E-14 1.5E-18 126.2 4.9 51 177-227 66-121 (250)
21 PLN00170 photosystem II light- 99.4 1.6E-13 3.5E-18 124.0 6.0 68 153-227 53-125 (255)
22 PLN00098 light-harvesting comp 99.4 1.2E-13 2.6E-18 125.6 4.2 54 65-118 191-245 (267)
23 PLN00099 light-harvesting comp 99.4 1.3E-13 2.8E-18 124.1 3.7 53 64-117 163-216 (243)
24 PLN00097 photosystem I light h 99.4 2.7E-13 5.8E-18 121.9 4.1 52 67-118 171-227 (244)
25 PLN00171 photosystem light-ha 99.4 5.3E-13 1.2E-17 123.9 4.8 52 67-118 252-303 (324)
26 PF00504 Chloroa_b-bind: Chlor 99.3 4.3E-13 9.4E-18 112.2 2.6 49 62-110 107-155 (156)
27 PLN00100 light-harvesting comp 99.3 3.5E-12 7.6E-17 114.8 4.4 46 177-222 48-98 (246)
28 PLN00120 fucoxanthin-chlorophy 99.1 2.3E-11 5E-16 106.9 3.5 50 65-114 142-194 (202)
29 PHA02337 putative high light i 98.2 9.4E-07 2E-11 57.1 3.0 28 199-226 4-31 (35)
30 PLN00084 photosystem II subuni 97.9 5.4E-06 1.2E-10 71.3 2.7 43 195-237 133-176 (214)
31 PLN00014 light-harvesting-like 97.7 2.6E-05 5.6E-10 69.8 3.3 36 198-233 160-195 (250)
32 PHA02337 putative high light i 97.6 3.8E-05 8.3E-10 49.7 1.7 29 89-117 3-31 (35)
33 PLN00014 light-harvesting-like 95.6 0.0046 9.9E-08 55.7 1.1 31 88-118 159-189 (250)
34 PLN00084 photosystem II subuni 94.8 0.013 2.8E-07 50.8 1.2 36 83-118 130-166 (214)
35 PLN02449 ferrochelatase 52.7 9.4 0.0002 38.2 2.2 22 207-228 463-484 (485)
36 COG3924 Predicted membrane pro 29.0 23 0.00049 26.9 0.5 34 93-126 9-48 (80)
No 1
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=6.1e-74 Score=513.39 Aligned_cols=247 Identities=93% Similarity=1.482 Sum_probs=218.0
Q ss_pred CcchhhhhhhccccccccccccccCCCCcccccccccCCCC--CCcceee-ccccCCCCCCCCCCCCCCCCCCCCccccC
Q 025674 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSS--SASFKVE-AKGEWLPGLASPTYLNGSLPGDNGFDPLG 77 (249)
Q Consensus 1 ma~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~Pg~~~p~~l~g~~pGd~gfDPlg 77 (249)
||++++.+..+++.+++.+++|+.+.+.+..+.++.+++++ ++++++. +|++|+||.++|+||||++|||+||||||
T Consensus 1 ma~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~W~P~~~~P~~LdG~~PGD~GFDPlG 80 (250)
T PLN00101 1 MATVTTQASAAVFRPCSSKSRFLSGSSSKLNRELSFKPMPSSATRSFKVEAKKGEWLPGLASPGYLNGSLPGDNGFDPLG 80 (250)
T ss_pred CchhhhhhhhccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCcccCCCCCCccCCCccc
Confidence 89888888888777777778887655544443333222222 2344444 58999999999999999999999999999
Q ss_pred CCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcCCCcccccccchhhccchhhHHHHHHHHHHHHHHHhhhcc
Q 025674 78 LAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157 (249)
Q Consensus 78 l~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~~~p~w~~a~~~~~~~~~~~l~~~qi~l~g~vE~~~~~~~ 157 (249)
|++|+++++|||++||+||||||||++|+++||++++.|++..|.|+++++..|+....+++++|+++|+++|++||+++
T Consensus 81 l~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~p~w~~ag~~~~~~~~~~l~~ie~~~mg~~E~~R~~~~ 160 (250)
T PLN00101 81 LAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 160 (250)
T ss_pred cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCcCCCccccccchhhcccchHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999998888788999999888888778899999999999999999999
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCC
Q 025674 158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 237 (249)
Q Consensus 158 ~~pG~~~~~~~f~~~~~~~~e~gyPGd~FDPLgl~~~~e~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~~L~~hl~~P 237 (249)
++||+.+.++.|.+..+.++|.+||||.||||||++++++|+||||||||||+|++||++|+++||++|++||.+||+||
T Consensus 161 ~~pG~~~~~~~~~~~~~~~gd~~YPGG~FDPLgl~~~~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP 240 (250)
T PLN00101 161 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTEEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDP 240 (250)
T ss_pred cCCCcccccccccccccCCccccCCCCccCccCCCccHHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCC
Confidence 99999888888887777788999999999999999888999999999999999999999999999999999999999999
Q ss_pred cccccccccc
Q 025674 238 WHNTIVQTLS 247 (249)
Q Consensus 238 ~~~ni~~~~~ 247 (249)
|||||+++|+
T Consensus 241 ~~~ni~~~~~ 250 (250)
T PLN00101 241 WHNTIVQTLS 250 (250)
T ss_pred cccchhhhcC
Confidence 9999999975
No 2
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=9.7e-67 Score=470.72 Aligned_cols=202 Identities=49% Similarity=0.976 Sum_probs=181.7
Q ss_pred eccccCCCCCCCCCCCCCCCCCCCCccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcCCCccccccc
Q 025674 48 EAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAG 127 (249)
Q Consensus 48 ~~~~~~~Pg~~~p~~l~g~~pGd~gfDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~~~p~w~~a~ 127 (249)
.+|++|+||.++|+||||++|||+|||||||++|+++++|||++|||||||||||++|+++||++++.|++..+.|++++
T Consensus 60 ~~r~~w~Pg~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag 139 (267)
T PLN00098 60 PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAG 139 (267)
T ss_pred CCccccCCCCCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCccccccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999888877767899999
Q ss_pred chhhccchhhHHHHHHHHHHHHHHHhhhcccCCCCCCCCcccccCCCCCCCCCCCCC-CCCCCCCCc-c----hHHHHHH
Q 025674 128 KAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAP-T----DEAKEKE 201 (249)
Q Consensus 128 ~~~~~~~~~~l~~~qi~l~g~vE~~~~~~~~~pG~~~~~~~f~~~~~~~~e~gyPGd-~FDPLgl~~-~----~e~k~kE 201 (249)
..+|+.+..+++++|+++||++|..||++++++|..+.++.+.+...+..|.+|||| +||||||.+ + +++|+||
T Consensus 140 ~~~~~~~~~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPGg~~FDPlgl~~~d~~~~~~~k~kE 219 (267)
T PLN00098 140 AREYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKE 219 (267)
T ss_pred chhhccCchHHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCCCCCCccCCcccCCCCCHHHHHHHHHHH
Confidence 877877767788999999999999999999889887766665443333456789999 799999965 3 4679999
Q ss_pred HhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCccccccccccCC
Q 025674 202 LANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSGN 249 (249)
Q Consensus 202 LkNGRLAMlAi~G~~~Qe~vtG~gPl~~L~~hl~~P~~~ni~~~~~~~ 249 (249)
||||||||+|++||++|+.+||++|++||.+||+||+||||++++++.
T Consensus 220 ikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~~~~~ 267 (267)
T PLN00098 220 IKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTSH 267 (267)
T ss_pred HhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhhccCC
Confidence 999999999999999999999999999999999999999999999763
No 3
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=1.1e-66 Score=464.91 Aligned_cols=196 Identities=53% Similarity=0.982 Sum_probs=178.8
Q ss_pred eccccCCCCCCCCCCCCCCCCCCCCccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcCCCccccccc
Q 025674 48 EAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAG 127 (249)
Q Consensus 48 ~~~~~~~Pg~~~p~~l~g~~pGd~gfDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~~~p~w~~a~ 127 (249)
..|++|+||.++|+||||++|||||||||||++|+++++|||++||+||||||||++|+++||++++.|+...+.||+++
T Consensus 42 ~~R~~w~Pg~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~~p~W~~Ag 121 (244)
T PLN00097 42 ADRPTWLPGKAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMADLPNWIDAA 121 (244)
T ss_pred CCCcccCCCCCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcccCCccccCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999988876677899999
Q ss_pred chh-hccchhhHHHHHHHHHHHHHHHhhhcccCCCCCCCCcccccCC-CCCCCCCCCCCCCCCCCCCcc----hHHHHHH
Q 025674 128 KAE-YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYS-LPPNEVGYPGGIFNPLNFAPT----DEAKEKE 201 (249)
Q Consensus 128 ~~~-~~~~~~~l~~~qi~l~g~vE~~~~~~~~~pG~~~~~~~f~~~~-~~~~e~gyPGd~FDPLgl~~~----~e~k~kE 201 (249)
+.. |+.+..+++++|+++|+++|.+||+++++||+.+.+|.|.... ..+.|.+||||.||||||.++ +++|+||
T Consensus 122 ~~~~~~~~~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~FDPlgl~~d~~~~~~lk~kE 201 (244)
T PLN00097 122 KWDGYWAGAGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGLFDKFGWAKDEKKAAELKLKE 201 (244)
T ss_pred cchhccccchhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCCCCCCCccccCCCHHHHHHHHHHH
Confidence 765 6666677889999999999999999999999988888765332 334678899999999999886 5789999
Q ss_pred HhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCcccccc
Q 025674 202 LANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIV 243 (249)
Q Consensus 202 LkNGRLAMlAi~G~~~Qe~vtG~gPl~~L~~hl~~P~~~ni~ 243 (249)
||||||||+|++||++|+.+||++|++||.+||+||+||||+
T Consensus 202 iknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~ 243 (244)
T PLN00097 202 IANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243 (244)
T ss_pred HHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccC
Confidence 999999999999999999999999999999999999999997
No 4
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=4.9e-65 Score=456.70 Aligned_cols=203 Identities=54% Similarity=0.982 Sum_probs=178.0
Q ss_pred eeeccccCCCCCCCCCCCCCCCCCCCCccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcCCCccccc
Q 025674 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYD 125 (249)
Q Consensus 46 ~~~~~~~~~Pg~~~p~~l~g~~pGd~gfDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~~~p~w~~ 125 (249)
....|++|+|++++|+||||++|||+|||||||++|+++++|||++|||||||||||++|+++||+++..|.+..|.|++
T Consensus 41 ~~~~R~~wlP~~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~~p~w~~ 120 (252)
T PLN00147 41 VAQERPTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRNLPVWYE 120 (252)
T ss_pred CCCCccccCCCCCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcCCcchhh
Confidence 34578999999999999999999999999999999999999999999999999999999999999998887767788999
Q ss_pred ccchhh-ccchhhHHHHHHHHHHHHHHHhhhcccCCCCCCCCcccccC--CCCCCCCCCCCC-CCCCCCCCcc----hHH
Q 025674 126 AGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY--SLPPNEVGYPGG-IFNPLNFAPT----DEA 197 (249)
Q Consensus 126 a~~~~~-~~~~~~l~~~qi~l~g~vE~~~~~~~~~pG~~~~~~~f~~~--~~~~~e~gyPGd-~FDPLgl~~~----~e~ 197 (249)
++...+ +...++++++|+++||++|..||.++++||+...+..|.+. .+...+.+|||| +||||||.++ +++
T Consensus 121 ag~~~~~~~~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~~yPGd~~FDPlGl~~d~~~~~~~ 200 (252)
T PLN00147 121 AGAVKFEFASTRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGLEPGYPGGPLFNPLGLAKDIENAHDW 200 (252)
T ss_pred cccchhccccchHHHHHHHHHHHHHHHHhhccccCCCccccccccccccccccccCCCCcccccCCccccCCCHHHHHHH
Confidence 875433 44457788999999999999999999999876654433221 123356789999 7999999886 568
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCccccccccccC
Q 025674 198 KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSG 248 (249)
Q Consensus 198 k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~~L~~hl~~P~~~ni~~~~~~ 248 (249)
|+||||||||||+|++||++|+++||++|++||.+||+|||||||++++++
T Consensus 201 k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~~ni~~~~~~ 251 (252)
T PLN00147 201 KLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLSH 251 (252)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccchhhhhhcC
Confidence 999999999999999999999999999999999999999999999999865
No 5
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=3.9e-61 Score=429.76 Aligned_cols=214 Identities=45% Similarity=0.818 Sum_probs=168.4
Q ss_pred Ccchhhhhh-----hccccccccccccccCCCCcccccccccCCCCCCcceeeccccCCCCCCCCCCCCCCCCCCCCccc
Q 025674 1 MATVTTQAS-----AAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDP 75 (249)
Q Consensus 1 ma~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~~p~~l~g~~pGd~gfDP 75 (249)
|||+|..+. .+..+ ++.||+| +.+.++++ ...+.+++.|..|+||.++|+||||++|||+||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~--------~~~~~~~~~~~~w~P~~~~P~~Ldg~~pgd~GfDP 69 (243)
T PLN00099 1 MASNTLMSCGIAAVFPSLL-SSSKSKF--ASSVPLPN--------ANGSSRVTMSADWMPGQPRPPYLDGSAPGDFGFDP 69 (243)
T ss_pred CcchhhhhcCccccchhhh-hhhhhhh--hccccccc--------CCccccccccccccCCCCCCccCCCCCCcccCCCc
Confidence 788777662 22222 2457778 22222221 12345567789999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcCCCcccccccc--------hhhc------cchhhHHHH
Q 025674 76 LGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGK--------AEYF------ASSSTLFVI 141 (249)
Q Consensus 76 lgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~~~p~w~~a~~--------~~~~------~~~~~l~~~ 141 (249)
|||++++++++|||++|||||||||||++|+++||.++. +.|++++. ..|+ ..++.++++
T Consensus 70 lgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~------~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~i 143 (243)
T PLN00099 70 LRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL------GNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAI 143 (243)
T ss_pred cccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc------CCcccccchhccCcchhhhccCccchhhHHHHHHH
Confidence 999999999999999999999999999999999998753 24554432 1222 123667889
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCcc----hHHHHHHHhhhhHHHHHHHHHHH
Q 025674 142 EFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGRLAMLAFLGFIV 217 (249)
Q Consensus 142 qi~l~g~vE~~~~~~~~~pG~~~~~~~f~~~~~~~~e~gyPGd~FDPLgl~~~----~e~k~kELkNGRLAMlAi~G~~~ 217 (249)
|++++|++|..|+... + ..+..||||.|||||+.++ +++|+|||||||||||||+||++
T Consensus 144 qvl~ig~~E~~r~~~~--------~---------~~~~~yPGd~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~v 206 (243)
T PLN00099 144 EFLAIAFVEHQRSMEK--------D---------PEKKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCV 206 (243)
T ss_pred HHHHHHHHHHHhhccC--------C---------CCCCcCCCCcCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9888999999875321 0 1134599999999999876 46899999999999999999999
Q ss_pred Hh-hccCCcchhhhhhhhcCCccccccccccC
Q 025674 218 QH-NVTGKGPFENLLQHISDPWHNTIVQTLSG 248 (249)
Q Consensus 218 Qe-~vtG~gPl~~L~~hl~~P~~~ni~~~~~~ 248 (249)
|+ .+||++|++||.+||+||||+||++++..
T Consensus 207 Q~~~~~G~gPl~nL~~hladp~~~N~~~~~~~ 238 (243)
T PLN00099 207 QQSAYPGTGPLENLATHLADPWHNNIGDIIIP 238 (243)
T ss_pred hhhhcCCCChHHHHHHHhcCCccCceeeeecc
Confidence 99 57999999999999999999999998854
No 6
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=4.5e-61 Score=428.69 Aligned_cols=180 Identities=39% Similarity=0.723 Sum_probs=160.0
Q ss_pred cceeeccccCCCCCCCCCCCCCCCCCCCCccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcCCCccc
Q 025674 44 SFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQW 123 (249)
Q Consensus 44 ~~~~~~~~~~~Pg~~~p~~l~g~~pGd~gfDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~~~p~w 123 (249)
.+.++.|.+|+||.++|+||||++|||||||||||++++++++|||++|||||||||||++|+++||+++ .|.|
T Consensus 29 ~~~~~~r~~W~P~~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~------~P~w 102 (246)
T PLN00100 29 RVAARARPMWYPGATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG------LPKF 102 (246)
T ss_pred ccccCCCcccCCCCCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc------ccch
Confidence 3445678999999999999999999999999999999999999999999999999999999999999864 3578
Q ss_pred ccccchhhccchhhHHHHHHHHHHHHHHHhhhcccCCCCCCCCcccccCCCCCCCCCCCCC-CCCCCCCCcchHHHHHHH
Q 025674 124 YDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPTDEAKEKEL 202 (249)
Q Consensus 124 ~~a~~~~~~~~~~~l~~~qi~l~g~vE~~~~~~~~~pG~~~~~~~f~~~~~~~~e~gyPGd-~FDPLgl~~~~e~k~kEL 202 (249)
++++...|..+.++++++|++++|++|..||++++++| +.++||| .|||||+++ +++|+|||
T Consensus 103 ~~ag~~~~~~~~~~l~~iqill~g~~E~~r~~~~~~~g----------------~~~~pg~~~FDPLGl~~-~~~K~KEI 165 (246)
T PLN00100 103 WEAGAEKYGLDLQTLVLIQVVVMAVLEAARYRGFMKTG----------------ESGVLSFFPFDPTGMDS-PEMKVKEV 165 (246)
T ss_pred hhcchhhhccchhHHHHHHHHHHHHHhhhccccccccc----------------ccCCCCCCCCCcccccH-HHHHHHHH
Confidence 88876655555677889999999999999988765433 2335777 799999986 78999999
Q ss_pred hhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCccccccccc
Q 025674 203 ANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTL 246 (249)
Q Consensus 203 kNGRLAMlAi~G~~~Qe~vtG~gPl~~L~~hl~~P~~~ni~~~~ 246 (249)
|||||||+||+||++|+.+||++|++||.+|++||+|+||+++.
T Consensus 166 kNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~~~~ 209 (246)
T PLN00100 166 KNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTSS 209 (246)
T ss_pred hhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccccCC
Confidence 99999999999999999999999999999999999999999874
No 7
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=8.7e-61 Score=431.53 Aligned_cols=201 Identities=44% Similarity=0.822 Sum_probs=171.0
Q ss_pred eeccccCCCCCCCCCCCCCCCCCCCCccccCCCCChH------HHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcCCC
Q 025674 47 VEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPE------NLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA 120 (249)
Q Consensus 47 ~~~~~~~~Pg~~~p~~l~g~~pGd~gfDPlgl~~~~~------~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~~~ 120 (249)
..+|++|+||.++|+||||++|||||||||||++ ++ +++|+|++||+||||||||++|+++||++++.|++..
T Consensus 39 ~~~r~~w~p~~~~P~yLdG~lPGD~GFDPlGL~~-p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~ 117 (262)
T PLN00048 39 GADRQLWFASKQSLSYLDGTLPGDFGFDPLGLSD-PEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQ 117 (262)
T ss_pred CCCCceecCCCCCccccCCCCCCccCCCccccCC-ccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCcccc
Confidence 3468999999999999999999999999999984 33 6799999999999999999999999999988777532
Q ss_pred ---cccccccc------hhhccchhhHHHHHHHHHHHHHHHhhhcccCCCCCCCCcccccC-CCCC-CCCCCCCC-CCCC
Q 025674 121 ---PQWYDAGK------AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY-SLPP-NEVGYPGG-IFNP 188 (249)
Q Consensus 121 ---p~w~~a~~------~~~~~~~~~l~~~qi~l~g~vE~~~~~~~~~pG~~~~~~~f~~~-~~~~-~e~gyPGd-~FDP 188 (249)
..|+++++ .+|+....+++++|+++||++|++||+++++||+.+...++.-. .+.. .|..|||| +|||
T Consensus 118 ~~~~~w~~ag~~~~~~~~~y~~~p~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~~~~d~~yPG~~~fDP 197 (262)
T PLN00048 118 ETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNP 197 (262)
T ss_pred ccccccccccccccccccccccchhHHHHHHHHHhhheeeeccccccCCCcccccccccchhccccccccccccccccCc
Confidence 25998774 23555555778889999999999999999999987654433211 1111 36679999 7999
Q ss_pred CCCCcc----hHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCccccccccccC
Q 025674 189 LNFAPT----DEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSG 248 (249)
Q Consensus 189 Lgl~~~----~e~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~~L~~hl~~P~~~ni~~~~~~ 248 (249)
||+.++ +++|++|||||||||+|++||++|+++||++|++||.+||+||+||||++|++.
T Consensus 198 lGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni~~~~~~ 261 (262)
T PLN00048 198 LGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNLKF 261 (262)
T ss_pred cccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCcccccccccccc
Confidence 999986 567999999999999999999999999999999999999999999999999864
No 8
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=1.5e-59 Score=426.96 Aligned_cols=179 Identities=45% Similarity=0.846 Sum_probs=154.9
Q ss_pred eeccccCCCCCCCCCCCCCCCCCCCCccccCCCCChHH------------------------------------------
Q 025674 47 VEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPEN------------------------------------------ 84 (249)
Q Consensus 47 ~~~~~~~~Pg~~~p~~l~g~~pGd~gfDPlgl~~~~~~------------------------------------------ 84 (249)
..+|++|+||.++|+||||++|||||||||||+++||.
T Consensus 49 ~~~r~~w~p~~~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f 128 (286)
T PLN00187 49 GADRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVF 128 (286)
T ss_pred CCCccccCCCCCCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhh
Confidence 45689999999999999999999999999999999886
Q ss_pred -HHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcCCCcccccccch------hhcc-----chhhHHHHHHHHHHHHHHH
Q 025674 85 -LKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKA------EYFA-----SSSTLFVIEFILFHYVEIR 152 (249)
Q Consensus 85 -l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~~~p~w~~a~~~------~~~~-----~~~~l~~~qi~l~g~vE~~ 152 (249)
++||||+|||||||||||++|+++||++++ . .|++++.. .|+. ...+++++|+++||++|.+
T Consensus 129 ~l~r~REaELiHGRwAMLAvaG~lvpEll~G--~----~W~~aG~~~~~~g~~y~g~~~p~~~~~l~~iqvllmG~~E~~ 202 (286)
T PLN00187 129 GLQRFRECELIHGRWAMLATLGALSVEALTG--V----TWQDAGKVELVDGSSYLGQPLPFSITTLIWIEVLVIGYIEFQ 202 (286)
T ss_pred HHHHHHHHHhhhhHHHHHHhhchhhHHhccC--C----cccccccccccccccccccccchhHHHHHHHHHHHHHHHHhh
Confidence 699999999999999999999999999853 2 47776642 2332 2356788999999999999
Q ss_pred hhhcccCCCCCCCCcccccCCCCCCCCCCCCC-CCCCCCCCcc----hHHHHHHHhhhhHHHHHHHHHHHHhhccCCcch
Q 025674 153 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPT----DEAKEKELANGRLAMLAFLGFIVQHNVTGKGPF 227 (249)
Q Consensus 153 ~~~~~~~pG~~~~~~~f~~~~~~~~e~gyPGd-~FDPLgl~~~----~e~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl 227 (249)
|+.+. + ..+..|||| .||||||.++ +++|++|||||||||+|++||++|+.+||++|+
T Consensus 203 R~~~~--------~---------~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi 265 (286)
T PLN00187 203 RNAEL--------D---------PEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 265 (286)
T ss_pred hccCC--------C---------CCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChH
Confidence 87531 0 124569999 7999999876 467999999999999999999999999999999
Q ss_pred hhhhhhhcCCccccccccccC
Q 025674 228 ENLLQHISDPWHNTIVQTLSG 248 (249)
Q Consensus 228 ~~L~~hl~~P~~~ni~~~~~~ 248 (249)
+||.+||+||+||||+++|++
T Consensus 266 ~nL~~Hladp~~~n~~~~~~~ 286 (286)
T PLN00187 266 NNWATHLSDPLHTTIIDTFSS 286 (286)
T ss_pred HHHHHHhcCcccccHHHhccC
Confidence 999999999999999999863
No 9
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=1.5e-57 Score=410.14 Aligned_cols=186 Identities=39% Similarity=0.708 Sum_probs=158.2
Q ss_pred eeccccCC-CCC-CCCCCCCCCCCCCCCccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCc-CCCccc
Q 025674 47 VEAKGEWL-PGL-ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQW 123 (249)
Q Consensus 47 ~~~~~~~~-Pg~-~~p~~l~g~~pGd~gfDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~-~~~p~w 123 (249)
...|.+|+ |+. ++|.||||++|||||||||||++|+++++|||++|||||||||||++|+++||+++..|+ +..+.|
T Consensus 48 g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~~~W 127 (262)
T PLN00025 48 GPDRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVW 127 (262)
T ss_pred CCCCccccCCcccCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCcccc
Confidence 35789999 776 689999999999999999999999999999999999999999999999999999987665 455679
Q ss_pred ccccc-------hhhccc--------hhhHHHHHHHHHHHHHHHhhhcccCCCCCCCCcccccCCCCCCCCCCCCCCCCC
Q 025674 124 YDAGK-------AEYFAS--------SSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNP 188 (249)
Q Consensus 124 ~~a~~-------~~~~~~--------~~~l~~~qi~l~g~vE~~~~~~~~~pG~~~~~~~f~~~~~~~~e~gyPGd~FDP 188 (249)
|+++. .+|+.. ..+++++|+++||++|.+|+.+. + .. ...|..||||.|||
T Consensus 128 ~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~--~-------~~-----~~~d~~yPG~~FDP 193 (262)
T PLN00025 128 FKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGG--P-------LG-----EGLDPLYPGGSFDP 193 (262)
T ss_pred cccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCC--c-------cc-----ccccCcCCcccCCc
Confidence 98764 234331 24566789999999999987641 1 10 01245699999999
Q ss_pred CCCCcc----hHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCccccccccc
Q 025674 189 LNFAPT----DEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTL 246 (249)
Q Consensus 189 Lgl~~~----~e~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~~L~~hl~~P~~~ni~~~~ 246 (249)
|||.++ +++|+||||||||||+|++||++|+++||++|++||.+||+||+||||+++.
T Consensus 194 lGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~~n~~~~~ 255 (262)
T PLN00025 194 LGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAYA 255 (262)
T ss_pred cccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccccchhhhh
Confidence 999876 4689999999999999999999999999999999999999999999998864
No 10
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=3.9e-57 Score=415.66 Aligned_cols=194 Identities=39% Similarity=0.780 Sum_probs=162.4
Q ss_pred eeeccccCCCCC--CCCCCCCCCCCCCCCccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcC--CCc
Q 025674 46 KVEAKGEWLPGL--ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII--NAP 121 (249)
Q Consensus 46 ~~~~~~~~~Pg~--~~p~~l~g~~pGd~gfDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~--~~p 121 (249)
...+|++|+|++ ++|+||||++|||||||||||++|+++++|||++|||||||||||++|+++||++++.|.+ ..|
T Consensus 104 ~g~~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~~~~~~p 183 (324)
T PLN00171 104 YGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHFAEP 183 (324)
T ss_pred cCCCCccccCCCCCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCccccCcc
Confidence 346789999888 6899999999999999999999999999999999999999999999999999999877653 336
Q ss_pred ccccccch-------hhcc----------chhhHHHHHHHHHHHHHHHhhhcccCCCCCCCCcccccCCCCCCCCCCCCC
Q 025674 122 QWYDAGKA-------EYFA----------SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG 184 (249)
Q Consensus 122 ~w~~a~~~-------~~~~----------~~~~l~~~qi~l~g~vE~~~~~~~~~pG~~~~~~~f~~~~~~~~e~gyPGd 184 (249)
.||+++.. +|+. .+..++++|+++|+.+|+.|+++++.++..+ . ..++|.+||||
T Consensus 184 ~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g-------~-~~PGD~gYPGG 255 (324)
T PLN00171 184 VWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLG-------I-YLPGDINYPGG 255 (324)
T ss_pred chhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCcc-------c-cCCCcccCCcc
Confidence 79987742 2221 1234677899888888999988754332111 0 12457889999
Q ss_pred -CCCCCCCCcc----hHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCcccccccccc
Q 025674 185 -IFNPLNFAPT----DEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLS 247 (249)
Q Consensus 185 -~FDPLgl~~~----~e~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~~L~~hl~~P~~~ni~~~~~ 247 (249)
+|||||++++ +++|++|||||||||+||+||++|+.+||++|++||.+||+||+||||++++.
T Consensus 256 ~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~~Ni~~~~~ 323 (324)
T PLN00171 256 ALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSLK 323 (324)
T ss_pred cCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccccchHHHhc
Confidence 7999999876 46899999999999999999999999999999999999999999999999874
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=1.2e-53 Score=383.07 Aligned_cols=177 Identities=41% Similarity=0.790 Sum_probs=150.5
Q ss_pred eccccCCCCCC------CCCCCCCCCCCCCCccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcCCCc
Q 025674 48 EAKGEWLPGLA------SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAP 121 (249)
Q Consensus 48 ~~~~~~~Pg~~------~p~~l~g~~pGd~gfDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~~~p 121 (249)
..|..|+|+.. +|+||||++|||+||||+||++|+++++|||++||+||||||||++|+++||++++.
T Consensus 49 ~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~------ 122 (255)
T PLN00170 49 QPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------ 122 (255)
T ss_pred CCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCC------
Confidence 45788999995 699999999999999999999999999999999999999999999999999998632
Q ss_pred ccccccchhh-cc--chhhHHHHHHHHHHHHHHHhhhcccCCCCCCCCcccc------cCCCCCCCCCCCCC-CCCCCCC
Q 025674 122 QWYDAGKAEY-FA--SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK------QYSLPPNEVGYPGG-IFNPLNF 191 (249)
Q Consensus 122 ~w~~a~~~~~-~~--~~~~l~~~qi~l~g~vE~~~~~~~~~pG~~~~~~~f~------~~~~~~~e~gyPGd-~FDPLgl 191 (249)
.|++++...+ .. +..+++++|+++||++|.+||+++++||+.+.++.+. ......++.+|||| .||||||
T Consensus 123 ~w~~aG~~~~~~~p~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~g~~~yPGG~~FDPLGl 202 (255)
T PLN00170 123 PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGLQGYPGGKFFDPLGL 202 (255)
T ss_pred ChhhCCccccccCccchHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccccccccCCCcccCCCcccCcccc
Confidence 5888876432 22 2356788999999999999999999999877665421 12223457889999 7999999
Q ss_pred Cc---------c----hHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhh
Q 025674 192 AP---------T----DEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLL 231 (249)
Q Consensus 192 ~~---------~----~e~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~~L~ 231 (249)
.+ + +++|+||||||||||+|++||++|+ .||++|+++|.
T Consensus 203 ~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 203 AGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred ccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 85 3 4689999999999999999999999 69999999984
No 12
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=297.02 Aligned_cols=158 Identities=32% Similarity=0.438 Sum_probs=119.5
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCccccCCCC-ChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcC----CCccccc
Q 025674 51 GEWLPGLASPTYLNGSLPGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII----NAPQWYD 125 (249)
Q Consensus 51 ~~~~Pg~~~p~~l~g~~pGd~gfDPlgl~~-~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~----~~p~w~~ 125 (249)
.-..|+++.|+.|||+ .||++||||||++ ++++++|||++||||||+||||++|+++||.++.+|.+ +.|.|++
T Consensus 38 ~g~~pf~~~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~~~p~~~~ 116 (209)
T PLN00089 38 PGAIGFAAKEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTID 116 (209)
T ss_pred ccccccccCCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccccccccccHHH
Confidence 4457899988899999 9999999999986 67889999999999999999999999999998877742 1222322
Q ss_pred ccchhhccchhhHH-HHHHHH-HHHHHHHhhhcccCCCCCCCCcccccCCCCCCCCCCCCC-CCCCCCCCc-c----hHH
Q 025674 126 AGKAEYFASSSTLF-VIEFIL-FHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAP-T----DEA 197 (249)
Q Consensus 126 a~~~~~~~~~~~l~-~~qi~l-~g~vE~~~~~~~~~pG~~~~~~~f~~~~~~~~e~gyPGd-~FDPLgl~~-~----~e~ 197 (249)
+. ...+..+ ++|+++ +|++|..... +..... ..+.+|||| +||||+|.+ + +++
T Consensus 117 a~-----~~~~~~g~~~Qi~~~ig~~E~~~~~----~~~~~~----------~~~~~~PGd~gfdplgl~~~d~~~~~~~ 177 (209)
T PLN00089 117 AH-----DALLKSGAMIQIFAWIGFVDLAVSA----PAAAAA----------AEFDRTPGDFGFDLLALYPKDAAKMEKK 177 (209)
T ss_pred HH-----HhhcccccHHHHHHHHHHHHHHHhh----cccccc----------ccCCCCCCCcCccccccCCCCHHHHHHH
Confidence 11 1112222 579875 6999964321 111000 012358999 899999953 3 467
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhccCCcchh
Q 025674 198 KEKELANGRLAMLAFLGFIVQHNVTGKGPFE 228 (249)
Q Consensus 198 k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~ 228 (249)
|++||||||||||||+||++|+.+||++.+.
T Consensus 178 ~~~El~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 178 KDKELKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 8999999999999999999999999998753
No 13
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=6.1e-41 Score=280.42 Aligned_cols=146 Identities=42% Similarity=0.714 Sum_probs=114.6
Q ss_pred CCCCCCCCCCCCCCccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCc----CCCcccccccchhhccc
Q 025674 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI----INAPQWYDAGKAEYFAS 134 (249)
Q Consensus 59 ~p~~l~g~~pGd~gfDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~----~~~p~w~~a~~~~~~~~ 134 (249)
+|++|||+++||+||||+||++++ +++|+|++||||||+||||++|++++|++++.+. .+.+.|.+++. .+
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~----~~ 75 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG----IP 75 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS----SS
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh----hh
Confidence 589999999999999999999887 9999999999999999999999999999976432 23455765432 12
Q ss_pred hhhHHHHHHH-HHHHHHHHhhhcccCCCCCCCCcccccCCCCCCCCCCCCC-CCCCCCCCcc----hHHHHHHHhhhhHH
Q 025674 135 SSTLFVIEFI-LFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPT----DEAKEKELANGRLA 208 (249)
Q Consensus 135 ~~~l~~~qi~-l~g~vE~~~~~~~~~pG~~~~~~~f~~~~~~~~e~gyPGd-~FDPLgl~~~----~e~k~kELkNGRLA 208 (249)
.+..+++|++ +++++|..+.++...+.... ..+..|||| .|||+|+.++ +++|++||||||||
T Consensus 76 ~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~-----------~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlA 144 (156)
T PF00504_consen 76 VPAAGWAQILLFIGALEPWRQQGVPEPGEGG-----------GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLA 144 (156)
T ss_dssp SHSHHHHHHHHHHHHHHHHHHHHTTTCCTTS-----------SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhHhhhhhcccccCCcccc-----------cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 5556666665 57999999887654332111 234568999 8999999744 56799999999999
Q ss_pred HHHHHHHHHHhh
Q 025674 209 MLAFLGFIVQHN 220 (249)
Q Consensus 209 MlAi~G~~~Qe~ 220 (249)
||||+|+++||.
T Consensus 145 Mla~~g~~~~e~ 156 (156)
T PF00504_consen 145 MLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC
Confidence 999999999983
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=2.8e-35 Score=257.49 Aligned_cols=147 Identities=24% Similarity=0.357 Sum_probs=104.0
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCCCC--ChHHHHHHHHhhHhcCCchhhhhhHhhhhhh-hhccCcCCCc-cccccc-c
Q 025674 54 LPGLASPTYLNGSLPGDNGFDPLGLAE--DPENLKWYVQAELVNSRWAMLGVVGMLLPEV-FTKIGIINAP-QWYDAG-K 128 (249)
Q Consensus 54 ~Pg~~~p~~l~g~~pGd~gfDPlgl~~--~~~~l~~~reaElkHGR~AMlA~~G~~~~e~-~~~~G~~~~p-~w~~a~-~ 128 (249)
.+|..+|.. .|||+||++ |+++++|||++|||||||||||++|++++|. ++.+|.++.. ..++.. .
T Consensus 37 ~~G~~~p~g---------~fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g~~~~~~p~ 107 (202)
T PLN00120 37 ELGAQAPLG---------FFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSGTSFSDIPN 107 (202)
T ss_pred ccCCCCCCC---------CCCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCcccccccccccccc
Confidence 357777752 299999974 7899999999999999999999999999997 4545543211 122211 0
Q ss_pred -hhhccchhhHHHHHHHH-HHHHHHHhhhcccCCCCCCCCcccccCCCCCCCCCCCC-------C-CCCCCCCCcchHHH
Q 025674 129 -AEYFASSSTLFVIEFIL-FHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPG-------G-IFNPLNFAPTDEAK 198 (249)
Q Consensus 129 -~~~~~~~~~l~~~qi~l-~g~vE~~~~~~~~~pG~~~~~~~f~~~~~~~~e~gyPG-------d-~FDPLgl~~~~e~k 198 (249)
...+..++..+|+|+++ +|++|+.++.+... +..+|| | +|||+.-.+.+++|
T Consensus 108 ~~~a~~~vp~~g~~qi~~~ig~~E~~~~~~~~~------------------~~~~pGd~~~g~~d~gfdp~~~~~~~~~~ 169 (202)
T PLN00120 108 GFAALDAIPTAGLLQILAFIGFLELAVMKDITG------------------EGEFVGDFRNGYIDFGWDSFDEETKLKKR 169 (202)
T ss_pred chhhhhhcchhHHHHHHHHHHHHHHHhhccccc------------------CCCCCCccCCCCCCCCCCCCCHHHHHHHH
Confidence 11223456677899875 59999876543211 112344 4 46766321115678
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhccCCcch
Q 025674 199 EKELANGRLAMLAFLGFIVQHNVTGKGPF 227 (249)
Q Consensus 199 ~kELkNGRLAMlAi~G~~~Qe~vtG~gPl 227 (249)
+|||||||||||||+||++|+.++|+.|+
T Consensus 170 ~~EL~NGRLAMiai~G~~~qe~l~g~~~~ 198 (202)
T PLN00120 170 AIELNQGRAAQMGILALMVHEQLGVELPI 198 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCcC
Confidence 99999999999999999999999999886
No 15
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.56 E-value=2.1e-15 Score=136.17 Aligned_cols=59 Identities=36% Similarity=0.521 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCCCccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcC
Q 025674 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118 (249)
Q Consensus 60 p~~l~g~~pGd~gfDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~ 118 (249)
+..++...|||++||||||.+|+++++++|.+||||||+||+|++|+++|+++++.|++
T Consensus 172 ~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~ 230 (252)
T PLN00147 172 LEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPI 230 (252)
T ss_pred ccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChH
Confidence 34566779999999999999999999999999999999999999999999999987753
No 16
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.53 E-value=5.3e-15 Score=134.22 Aligned_cols=54 Identities=33% Similarity=0.595 Sum_probs=50.7
Q ss_pred CCCCCCCCCccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCc
Q 025674 64 NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117 (249)
Q Consensus 64 ~g~~pGd~gfDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~ 117 (249)
|..+|||++||||||++|+|+++++|.+||||||+||+|++|+++|+++++.|+
T Consensus 186 d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp 239 (262)
T PLN00048 186 NPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGP 239 (262)
T ss_pred ccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCH
Confidence 446999999999999999999999999999999999999999999999998775
No 17
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.51 E-value=1e-14 Score=128.63 Aligned_cols=53 Identities=34% Similarity=0.485 Sum_probs=49.0
Q ss_pred CCCCCCCCccccCCC-CChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCc
Q 025674 65 GSLPGDNGFDPLGLA-EDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117 (249)
Q Consensus 65 g~~pGd~gfDPlgl~-~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~ 117 (249)
+..|||+||||+||. +|+++++++|.+||||||+||+|++|+++||++++.|+
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~ 206 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGF 206 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 468999999999994 68999999999999999999999999999999988765
No 18
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.46 E-value=3.5e-14 Score=128.84 Aligned_cols=55 Identities=36% Similarity=0.671 Sum_probs=51.0
Q ss_pred CCCCCCCCCCccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcC
Q 025674 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118 (249)
Q Consensus 63 l~g~~pGd~gfDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~ 118 (249)
.|...|||+ ||||||++|+++++++|.+||||||+||+|++|+++|+++++.|++
T Consensus 182 ~d~~yPG~~-FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPl 236 (262)
T PLN00025 182 LDPLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 236 (262)
T ss_pred ccCcCCccc-CCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChH
Confidence 355799999 9999999999999999999999999999999999999999988764
No 19
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.45 E-value=3.3e-14 Score=130.23 Aligned_cols=55 Identities=36% Similarity=0.546 Sum_probs=51.3
Q ss_pred CCCCCCCCCccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcC
Q 025674 64 NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118 (249)
Q Consensus 64 ~g~~pGd~gfDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~ 118 (249)
+..+|||++||||||++|+++++++|++|||||||||+|++|+++|+.+++.|++
T Consensus 211 ~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi 265 (286)
T PLN00187 211 KRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 265 (286)
T ss_pred CCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChH
Confidence 4558999999999999999999999999999999999999999999999988764
No 20
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.44 E-value=6.9e-14 Score=126.15 Aligned_cols=51 Identities=33% Similarity=0.464 Sum_probs=45.7
Q ss_pred CCCCCCCC-CCCCCCCCcc----hHHHHHHHhhhhHHHHHHHHHHHHhhccCCcch
Q 025674 177 NEVGYPGG-IFNPLNFAPT----DEAKEKELANGRLAMLAFLGFIVQHNVTGKGPF 227 (249)
Q Consensus 177 ~e~gyPGd-~FDPLgl~~~----~e~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl 227 (249)
.|..+||| +||||||.++ +++|++||+||||||||++|+++||++++.+++
T Consensus 66 LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 66 LNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred cCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 45568999 9999999876 567999999999999999999999999998776
No 21
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.43 E-value=1.6e-13 Score=123.98 Aligned_cols=68 Identities=31% Similarity=0.426 Sum_probs=51.3
Q ss_pred hhhcccCCCCCCCCcccccCCCCCCCCCCCCC-CCCCCCCCcc----hHHHHHHHhhhhHHHHHHHHHHHHhhccCCcch
Q 025674 153 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPT----DEAKEKELANGRLAMLAFLGFIVQHNVTGKGPF 227 (249)
Q Consensus 153 ~~~~~~~pG~~~~~~~f~~~~~~~~e~gyPGd-~FDPLgl~~~----~e~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl 227 (249)
+|.+..+||+....|. ..|..+||| +||||+|.++ +++|++||+|||+||+|++|+++||+++|...+
T Consensus 53 ~w~p~~~~~~~~~~P~-------~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~ 125 (255)
T PLN00170 53 SWIPAVKGGGNLVDPE-------WLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 125 (255)
T ss_pred cccCCCCCCcccCCcc-------cccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChh
Confidence 4445455554433332 134568999 8999999876 457999999999999999999999999986443
No 22
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.41 E-value=1.2e-13 Score=125.64 Aligned_cols=54 Identities=35% Similarity=0.499 Sum_probs=49.5
Q ss_pred CCCCCCCCccccCCCC-ChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcC
Q 025674 65 GSLPGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118 (249)
Q Consensus 65 g~~pGd~gfDPlgl~~-~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~ 118 (249)
...|||++|||+||.+ |+++++++|.+||||||+||+|++|+++|+++++.|++
T Consensus 191 ~~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl 245 (267)
T PLN00098 191 VGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPI 245 (267)
T ss_pred CCCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChH
Confidence 3589999999999975 89999999999999999999999999999999987764
No 23
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.40 E-value=1.3e-13 Score=124.07 Aligned_cols=53 Identities=34% Similarity=0.672 Sum_probs=47.4
Q ss_pred CCCCCCCCCccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhh-hhccCc
Q 025674 64 NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEV-FTKIGI 117 (249)
Q Consensus 64 ~g~~pGd~gfDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~-~~~~G~ 117 (249)
+...||| +||||||.+|+++++++|.+||||||+||+|++|+++|+. +++.|+
T Consensus 163 ~~~yPGd-~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gP 216 (243)
T PLN00099 163 KKKYPGG-AFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGP 216 (243)
T ss_pred CCcCCCC-cCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCh
Confidence 3568999 8999999999999999999999999999999999999994 555554
No 24
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.38 E-value=2.7e-13 Score=121.94 Aligned_cols=52 Identities=31% Similarity=0.412 Sum_probs=47.1
Q ss_pred CCCCCC-----ccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcC
Q 025674 67 LPGDNG-----FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118 (249)
Q Consensus 67 ~pGd~g-----fDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~ 118 (249)
.|+|.+ ||||||++|+++++++|.+||||||+||+|++|+++|+++++.|++
T Consensus 171 ~~~d~gYPgg~FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl 227 (244)
T PLN00097 171 TNTDVGYPKGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPV 227 (244)
T ss_pred cccccCCCCCCCCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHH
Confidence 345555 9999999999999999999999999999999999999999988764
No 25
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.36 E-value=5.3e-13 Score=123.86 Aligned_cols=52 Identities=35% Similarity=0.570 Sum_probs=47.1
Q ss_pred CCCCCCccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcC
Q 025674 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118 (249)
Q Consensus 67 ~pGd~gfDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~ 118 (249)
+||+++|||+||++|+++++++|.+||||||+||+|++|+++|+++++.|++
T Consensus 252 YPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPl 303 (324)
T PLN00171 252 YPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPV 303 (324)
T ss_pred CCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChH
Confidence 3555569999999999999999999999999999999999999999987753
No 26
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.33 E-value=4.3e-13 Score=112.18 Aligned_cols=49 Identities=51% Similarity=0.808 Sum_probs=46.5
Q ss_pred CCCCCCCCCCCccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhh
Q 025674 62 YLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPE 110 (249)
Q Consensus 62 ~l~g~~pGd~gfDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e 110 (249)
..++..|||++|||+|+.+|++..+++|.+||+|||+||+|++|++++|
T Consensus 107 ~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e 155 (156)
T PF00504_consen 107 GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQE 155 (156)
T ss_dssp SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678899999999999998999999999999999999999999999987
No 27
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.26 E-value=3.5e-12 Score=114.77 Aligned_cols=46 Identities=33% Similarity=0.442 Sum_probs=40.9
Q ss_pred CCCCCCCC-CCCCCCCCcc----hHHHHHHHhhhhHHHHHHHHHHHHhhcc
Q 025674 177 NEVGYPGG-IFNPLNFAPT----DEAKEKELANGRLAMLAFLGFIVQHNVT 222 (249)
Q Consensus 177 ~e~gyPGd-~FDPLgl~~~----~e~k~kELkNGRLAMlAi~G~~~Qe~vt 222 (249)
.|..+||| +||||||+++ +++|++||||||+||+|++|+++||+++
T Consensus 48 Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 48 LDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 45678999 8999999876 4679999999999999999999999875
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.14 E-value=2.3e-11 Score=106.91 Aligned_cols=50 Identities=24% Similarity=0.303 Sum_probs=40.2
Q ss_pred CCCCCCCCcc--ccCCCC-ChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhc
Q 025674 65 GSLPGDNGFD--PLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK 114 (249)
Q Consensus 65 g~~pGd~gfD--Plgl~~-~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~ 114 (249)
+..|||++++ ++||.. |+++.+++|.+||||||+||+|++|++++|.+++
T Consensus 142 ~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g 194 (202)
T PLN00120 142 GEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGV 194 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 5789965322 344332 7889999999999999999999999999999865
No 29
>PHA02337 putative high light inducible protein
Probab=98.24 E-value=9.4e-07 Score=57.13 Aligned_cols=28 Identities=36% Similarity=0.450 Sum_probs=26.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhccCCcc
Q 025674 199 EKELANGRLAMLAFLGFIVQHNVTGKGP 226 (249)
Q Consensus 199 ~kELkNGRLAMlAi~G~~~Qe~vtG~gP 226 (249)
..|+-|||||||||...+.-|++||++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 5799999999999999999999999864
No 30
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=97.94 E-value=5.4e-06 Score=71.33 Aligned_cols=43 Identities=47% Similarity=0.584 Sum_probs=36.4
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhhcc-CCcchhhhhhhhcCC
Q 025674 195 DEAKEKELANGRLAMLAFLGFIVQHNVT-GKGPFENLLQHISDP 237 (249)
Q Consensus 195 ~e~k~kELkNGRLAMlAi~G~~~Qe~vt-G~gPl~~L~~hl~~P 237 (249)
.|.|..|+.||||||+||+--++-|.+| |+||+.||...-.-|
T Consensus 133 rEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvP 176 (214)
T PLN00084 133 REQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVP 176 (214)
T ss_pred HhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCc
Confidence 3556789999999999999999999999 999999987543333
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.71 E-value=2.6e-05 Score=69.84 Aligned_cols=36 Identities=33% Similarity=0.482 Sum_probs=33.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhh
Q 025674 198 KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQH 233 (249)
Q Consensus 198 k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~~L~~h 233 (249)
...|+-|||+|||||+..++-|++||++.+.|+...
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f 195 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNF 195 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhh
Confidence 458999999999999999999999999999998754
No 32
>PHA02337 putative high light inducible protein
Probab=97.57 E-value=3.8e-05 Score=49.70 Aligned_cols=29 Identities=31% Similarity=0.255 Sum_probs=26.1
Q ss_pred HHhhHhcCCchhhhhhHhhhhhhhhccCc
Q 025674 89 VQAELVNSRWAMLGVVGMLLPEVFTKIGI 117 (249)
Q Consensus 89 reaElkHGR~AMlA~~G~~~~e~~~~~G~ 117 (249)
..+|+.|||+||++++..+..|.+++.++
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 36899999999999999999999998755
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=95.63 E-value=0.0046 Score=55.69 Aligned_cols=31 Identities=35% Similarity=0.549 Sum_probs=28.0
Q ss_pred HHHhhHhcCCchhhhhhHhhhhhhhhccCcC
Q 025674 88 YVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118 (249)
Q Consensus 88 ~reaElkHGR~AMlA~~G~~~~e~~~~~G~~ 118 (249)
+.++|+.|||+||+|++..++.|++++.|++
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll 189 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLV 189 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHH
Confidence 3579999999999999999999999988764
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=94.77 E-value=0.013 Score=50.83 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=31.7
Q ss_pred HHHHHHHHhhHhcCCchhhhhhHhhhhhhhh-ccCcC
Q 025674 83 ENLKWYVQAELVNSRWAMLGVVGMLLPEVFT-KIGII 118 (249)
Q Consensus 83 ~~l~~~reaElkHGR~AMlA~~G~~~~e~~~-~~G~~ 118 (249)
.+.+..+..|+.|||+||++++--++.|+++ +.|++
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL 166 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPL 166 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchH
Confidence 4667777889999999999999999999999 77774
No 35
>PLN02449 ferrochelatase
Probab=52.74 E-value=9.4 Score=38.17 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhccCCcchh
Q 025674 207 LAMLAFLGFIVQHNVTGKGPFE 228 (249)
Q Consensus 207 LAMlAi~G~~~Qe~vtG~gPl~ 228 (249)
+||+||+.+++-|+++|+||+.
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~ 484 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNLH 484 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcCC
Confidence 9999999999999999999973
No 36
>COG3924 Predicted membrane protein [Function unknown]
Probab=28.96 E-value=23 Score=26.86 Aligned_cols=34 Identities=26% Similarity=0.645 Sum_probs=25.6
Q ss_pred HhcCCchh----hhhhHhhhhhhhhc--cCcCCCcccccc
Q 025674 93 LVNSRWAM----LGVVGMLLPEVFTK--IGIINAPQWYDA 126 (249)
Q Consensus 93 lkHGR~AM----lA~~G~~~~e~~~~--~G~~~~p~w~~a 126 (249)
=|..|||. +=.+||++...+.+ +|+.+.|.|++.
T Consensus 9 ~KEA~WAlgLtllYl~gW~v~AYlp~~t~G~~gfP~WFE~ 48 (80)
T COG3924 9 HKEARWALGLTLLYLAGWLVAAYLPGNTPGFTGFPLWFEM 48 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCChHHHHH
Confidence 36778874 55678988888755 577888999973
Done!