Query 025674
Match_columns 249
No_of_seqs 218 out of 1231
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 15:08:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_4 Chlorophyll A-B binding 100.0 1.9E-67 6.6E-72 471.9 1.5 247 1-248 1-250 (251)
2 2wsc_2 LHCA2, type II chloroph 100.0 3.5E-65 1.2E-69 460.7 3.2 200 48-248 62-268 (269)
3 2wsc_3 LHCA3, type II chloroph 100.0 1.2E-61 4.2E-66 439.0 5.0 199 49-248 55-275 (276)
4 3pl9_A Chlorophyll A-B binding 100.0 2E-59 6.8E-64 416.8 10.6 176 48-246 9-242 (243)
5 2bhw_A Chlorophyll A-B binding 100.0 1.4E-56 4.9E-61 397.7 17.0 189 46-248 17-227 (232)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 7.2E-57 2.5E-61 401.1 5.8 187 44-247 39-238 (241)
7 3pl9_A Chlorophyll A-B binding 99.5 1.2E-14 4.1E-19 129.3 2.6 52 66-118 172-223 (243)
8 2wsc_3 LHCA3, type II chloroph 99.4 1.5E-14 5E-19 131.0 0.9 55 64-118 200-254 (276)
9 2bhw_A Chlorophyll A-B binding 99.4 7E-14 2.4E-18 123.8 4.1 55 63-118 152-206 (232)
10 2wsc_2 LHCA2, type II chloroph 99.4 2.8E-14 9.6E-19 128.7 -1.0 55 64-118 192-247 (269)
11 2wsc_1 AT3G54890, LHCA1; photo 99.3 2.3E-13 7.9E-18 121.1 -0.9 54 64-118 164-218 (241)
12 2wsc_4 Chlorophyll A-B binding 99.3 4.3E-13 1.5E-17 120.0 0.5 49 179-227 68-121 (251)
13 2dpr_A CON-T(K7GLA); conantoxi 27.5 36 0.0012 19.4 1.9 14 82-95 6-19 (26)
No 1
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=1.9e-67 Score=471.88 Aligned_cols=247 Identities=87% Similarity=1.390 Sum_probs=152.8
Q ss_pred CcchhhhhhhccccccccccccccCCCCcccccccc-cCCC-CCCcceee-ccccCCCCCCCCCCCCCCCCCCCCccccC
Q 025674 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVAL-KPVS-SSASFKVE-AKGEWLPGLASPTYLNGSLPGDNGFDPLG 77 (249)
Q Consensus 1 ma~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~-~~~~~~Pg~~~p~~l~g~~pGd~gfDPlg 77 (249)
||++++.++.++.+++..++++++.++..+.+.+.. .+.+ ..++.... +|++|+||.+.|.||||++|||+||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~pg~~~p~~l~g~~pGd~gfDPlG 80 (251)
T 2wsc_4 1 MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLG 80 (251)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CchhhccccccccCccccccchhhccccccccccccccccccccccccCcchhhhccCCCCCccccCCCcCCCCCCCccc
Confidence 888888888777766655667777666444322221 2122 22333334 58999999999999999999999999999
Q ss_pred CCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcCCCcccccccchhhccchhhHHHHHHHHHHHHHHHhhhcc
Q 025674 78 LAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157 (249)
Q Consensus 78 l~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~~~p~w~~a~~~~~~~~~~~l~~~qi~l~g~vE~~~~~~~ 157 (249)
|++|+|+++|+|++|||||||||||++|++++|++++.|++..|.|++++...|+...+.++++|+++||++|..|++++
T Consensus 81 l~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~~p~w~~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~~ 160 (251)
T 2wsc_4 81 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDI 160 (251)
T ss_dssp CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSCCCCCSCCCSSSCSSCSSCTTTTHHHHHHTTTHHHHHHH
T ss_pred cCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCccCCccccccchHhhhccchHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999998887778899988777777777788899999999999999999
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCC
Q 025674 158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 237 (249)
Q Consensus 158 ~~pG~~~~~~~f~~~~~~~~e~gyPGd~FDPLgl~~~~e~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~~L~~hl~~P 237 (249)
++||+++.+|.|.+...+..|.+||||.||||++.+.+++|+|||||||| ||||+||++|+.+||++|++||.+||+||
T Consensus 161 ~~pG~~g~~p~f~~~~~~~~d~~yPGg~FDPLgl~~~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP 239 (251)
T 2wsc_4 161 KNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDP 239 (251)
T ss_dssp SSCCCTTCCSSSCSSSSCCHHHHSSCCTTCCCCCCSSSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCC
T ss_pred cCCCcccccccccccccccccccCCCCccCccchhHHHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccCh
Confidence 99999888888876555455668999999999998878899999999999 99999999999999999999999999999
Q ss_pred ccccccccccC
Q 025674 238 WHNTIVQTLSG 248 (249)
Q Consensus 238 ~~~ni~~~~~~ 248 (249)
|||||++++++
T Consensus 240 ~~~n~~~~~~~ 250 (251)
T 2wsc_4 240 WHNTIVQTLGG 250 (251)
T ss_dssp CCCCSCC----
T ss_pred hhhhhhhhhcC
Confidence 99999999875
No 2
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=3.5e-65 Score=460.70 Aligned_cols=200 Identities=54% Similarity=1.059 Sum_probs=152.9
Q ss_pred eccccCCCCCCCCCCCCCCCCCCCCccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcCCCccccccc
Q 025674 48 EAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAG 127 (249)
Q Consensus 48 ~~~~~~~Pg~~~p~~l~g~~pGd~gfDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~~~p~w~~a~ 127 (249)
.+|++|+||.++|.||||++|||+|||||||++|+|+++|||++|||||||||||++|+++||++++.|++..|.|++++
T Consensus 62 ~~r~~wlpg~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~p~w~~aG 141 (269)
T 2wsc_2 62 PDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAG 141 (269)
T ss_dssp --------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSCCCCCSTT
T ss_pred CCcccccCCCCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcccCccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999988887778899988
Q ss_pred chhhccchhhHHHHHHHHHHHHHHHhhhcccCCCCCCCCcccccCCCCCCCCCCCCC-CCCCCCCCcc-----hHHHHHH
Q 025674 128 KAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPT-----DEAKEKE 201 (249)
Q Consensus 128 ~~~~~~~~~~l~~~qi~l~g~vE~~~~~~~~~pG~~~~~~~f~~~~~~~~e~gyPGd-~FDPLgl~~~-----~e~k~kE 201 (249)
...++.+.+.++++|+++||++|+.||+++++||+++.++.|.+......|.+|||| +||||||.++ +++|.+|
T Consensus 142 ~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~~fDPlgl~~~~~e~~~~~~~~E 221 (269)
T 2wsc_2 142 EQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKE 221 (269)
T ss_dssp SSSSCCCTTSHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCSSCCCSSSSSSCCCSCTTSTTTT
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccccccccCCCCCcccCccccCcccHHHHHHHHHhh
Confidence 777777777888999999999999999999999998888888765555567889999 6999999753 4578999
Q ss_pred HhhhhHHHHHHHHHHHHhhccCCcchhhhh-hhhcCCccccccccccC
Q 025674 202 LANGRLAMLAFLGFIVQHNVTGKGPFENLL-QHISDPWHNTIVQTLSG 248 (249)
Q Consensus 202 LkNGRLAMlAi~G~~~Qe~vtG~gPl~~L~-~hl~~P~~~ni~~~~~~ 248 (249)
|||||||||||+|+++|+.+||++|++||. +||+|| ||||++++++
T Consensus 222 i~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP-~~n~~~~~~~ 268 (269)
T 2wsc_2 222 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP-HATIFAAFTP 268 (269)
T ss_dssp HHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS-CCCCCSSSCC
T ss_pred cccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc-ccchhhhccC
Confidence 999999999999999999999999999999 999999 9999999875
No 3
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=1.2e-61 Score=438.95 Aligned_cols=199 Identities=48% Similarity=0.873 Sum_probs=124.9
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCccccCCCCChHHH------HHHHHhhHhcCCchhhhhhHhhhhhhhhccCcC--CC
Q 025674 49 AKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII--NA 120 (249)
Q Consensus 49 ~~~~~~Pg~~~p~~l~g~~pGd~gfDPlgl~~~~~~l------~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~--~~ 120 (249)
+|++|+|+.++|+||||++|||+||||||| +|++++ +|+|++|||||||||||++|++++|++++.|++ +.
T Consensus 55 ~R~~wlP~~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~~~~~ 133 (276)
T 2wsc_3 55 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQET 133 (276)
T ss_dssp -------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCCCCSS
T ss_pred CccccCCCCCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccccccccC
Confidence 689999999999999999999999999999 688888 999999999999999999999999999988765 33
Q ss_pred cc-cccc------cchhhccchhhHHHHHHHHHHHHHHHhhhcccCCCCCCCCccc--ccCCCCCCCCCCCCC-CCCCCC
Q 025674 121 PQ-WYDA------GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPPNEVGYPGG-IFNPLN 190 (249)
Q Consensus 121 p~-w~~a------~~~~~~~~~~~l~~~qi~l~g~vE~~~~~~~~~pG~~~~~~~f--~~~~~~~~e~gyPGd-~FDPLg 190 (249)
+. |++. +...|+....+++++|+++||++|..|++++++||+.+.++.| +.......|.+|||| +|||||
T Consensus 134 p~~w~~~g~ip~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~~d~~yPG~~~fDPlg 213 (276)
T 2wsc_3 134 ALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLG 213 (276)
T ss_dssp CCSSSSCCCC-----CCCSCCCCSTTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCCSSCTTTSSSSCCCCC
T ss_pred cchhhhhhcccchhHHHHhccchHHHHHHHHHHHHHHHhhhcccccCCcccccccccccccccccccccCCCcccccchh
Confidence 44 8873 3335666666788999999999999999999999998877776 222233457789999 799999
Q ss_pred CCcc----hHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCccccccccccC
Q 025674 191 FAPT----DEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSG 248 (249)
Q Consensus 191 l~~~----~e~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~~L~~hl~~P~~~ni~~~~~~ 248 (249)
|.++ +++|.+||||||||||||+|+++|+.+||++|++||.+||+|||||||+++++.
T Consensus 214 l~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~~n~~~~~~~ 275 (276)
T 2wsc_3 214 FGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKF 275 (276)
T ss_dssp CSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC-------------------
T ss_pred cccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcccchhhhhccC
Confidence 9876 457889999999999999999999999999999999999999999999999865
No 4
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=2e-59 Score=416.79 Aligned_cols=176 Identities=44% Similarity=0.821 Sum_probs=118.3
Q ss_pred eccccCCCCCCCCCCCCCCCCCCCCccccCCCCChHH-------------------------------------------
Q 025674 48 EAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPEN------------------------------------------- 84 (249)
Q Consensus 48 ~~~~~~~Pg~~~p~~l~g~~pGd~gfDPlgl~~~~~~------------------------------------------- 84 (249)
.+|++|+||.++|+||||++|||||||||||+++||.
T Consensus 9 ~~r~~w~pg~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (243)
T 3pl9_A 9 TDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFG 88 (243)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred cccccccCCCCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccchhh
Confidence 4799999999999999999999999999999999873
Q ss_pred HHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcCCCcccccccch------hhc-----cchhhHHHHHHHHHHHHHHHh
Q 025674 85 LKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKA------EYF-----ASSSTLFVIEFILFHYVEIRR 153 (249)
Q Consensus 85 l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~~~p~w~~a~~~------~~~-----~~~~~l~~~qi~l~g~vE~~~ 153 (249)
++||||+|||||||||||++|+++||++++. .|++++.. .|+ ..+++++++|+++||++|.+|
T Consensus 89 l~r~ReaELkHGRwAMLAvlG~lvpE~l~g~------~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv~lmG~~E~~R 162 (243)
T 3pl9_A 89 LQRFRECELIHGRWAMLATLGALTVEGLTGI------TWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQR 162 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC------CTTTHHHHHHHSCEEETTEEECCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhhcchhHHHHHHHHHhHHhhcCc------ccccccccccccccccccCccchhhHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999998632 57765532 222 134577889999999999999
Q ss_pred hhcccCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCcc----hHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhh
Q 025674 154 WQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFEN 229 (249)
Q Consensus 154 ~~~~~~pG~~~~~~~f~~~~~~~~e~gyPGd~FDPLgl~~~----~e~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~~ 229 (249)
+++.. ..+..||||.|||||++++ +++|.+|||||||||+||+|+++|+++||+||++|
T Consensus 163 ~~~~~-----------------~~~~~~PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~ 225 (243)
T 3pl9_A 163 NAELD-----------------TEKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNN 225 (243)
T ss_dssp HSCCC-----------------TTTTTCCCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred hcccC-----------------CccccCCCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHH
Confidence 87521 1234589999999999876 46799999999999999999999999999999999
Q ss_pred hhhhhcCCccccccccc
Q 025674 230 LLQHISDPWHNTIVQTL 246 (249)
Q Consensus 230 L~~hl~~P~~~ni~~~~ 246 (249)
|.+||+||+||||++++
T Consensus 226 l~~HladP~~~ni~~~~ 242 (243)
T 3pl9_A 226 WVTHLSDPLHTTILDRF 242 (243)
T ss_dssp HHHHHHCSGGGSTTTTT
T ss_pred HHHHhcCcchhhhhhhc
Confidence 99999999999999986
No 5
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=1.4e-56 Score=397.69 Aligned_cols=189 Identities=40% Similarity=0.717 Sum_probs=158.3
Q ss_pred eeeccccCCCCC--CCCCCCCCCCCCCCCccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCc-CCCcc
Q 025674 46 KVEAKGEWLPGL--ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQ 122 (249)
Q Consensus 46 ~~~~~~~~~Pg~--~~p~~l~g~~pGd~gfDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~-~~~p~ 122 (249)
...+|++|+|+. ++|+||||++|||+|||||||++|+++++||||+|||||||||||++|+++||+++..|+ +..+.
T Consensus 17 ~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G~~~~~~~ 96 (232)
T 2bhw_A 17 YGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKFGEAV 96 (232)
T ss_dssp SSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSCCS
T ss_pred cCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCCcCCcccc
Confidence 345789999874 799999999999999999999999999999999999999999999999999999987765 44567
Q ss_pred cccccch-------hhcc--------chhhHHHHHHHHHHHHHHHhhhcccCCCCCCCCcccccCCCCCCCCCCCCCCCC
Q 025674 123 WYDAGKA-------EYFA--------SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFN 187 (249)
Q Consensus 123 w~~a~~~-------~~~~--------~~~~l~~~qi~l~g~vE~~~~~~~~~pG~~~~~~~f~~~~~~~~e~gyPGd~FD 187 (249)
|++++.. +|+. .+..++++|+++||++|..|+++ .+.. ...|..||||.||
T Consensus 97 w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~--g~~g------------~~~d~~~Pg~~fd 162 (232)
T 2bhw_A 97 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLG------------EVVDPLYPGGSFD 162 (232)
T ss_dssp GGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHE--ETTE------------ECSSSSCCCTTSC
T ss_pred cccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhcc--Cccc------------ccccccCCCcccc
Confidence 8876531 1211 12355678998899999998865 1110 0124568999999
Q ss_pred CCCCCcc----hHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCccccccccccC
Q 025674 188 PLNFAPT----DEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSG 248 (249)
Q Consensus 188 PLgl~~~----~e~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~~L~~hl~~P~~~ni~~~~~~ 248 (249)
|||+.++ +++|.+|||||||||+||+|+++|+.+||++|++||.+|++|||||||+++++.
T Consensus 163 Plgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~~~ 227 (232)
T 2bhw_A 163 PLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATN 227 (232)
T ss_dssp TTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGTTT
T ss_pred cchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHHHh
Confidence 9999876 357899999999999999999999999999999999999999999999998754
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=7.2e-57 Score=401.12 Aligned_cols=187 Identities=45% Similarity=0.893 Sum_probs=125.6
Q ss_pred cceeeccccCCCCCCCCCCCCCCCCCCCCccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcCCCccc
Q 025674 44 SFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQW 123 (249)
Q Consensus 44 ~~~~~~~~~~~Pg~~~p~~l~g~~pGd~gfDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~~~p~w 123 (249)
+.++..+++|+||.++|+||||++|||+|||||||++|+|+++|||++|||||||||||++|+++||+++..+.+....|
T Consensus 39 ~~~~sm~~~w~P~~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~ 118 (241)
T 2wsc_1 39 VGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEW 118 (241)
T ss_dssp ----------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCC
T ss_pred ccccccccccCCCCCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccCCccccccch
Confidence 34566788999999999999999999999999999999999999999999999999999999999999764322211122
Q ss_pred cc--ccchhh------ccchhhHHHHHHHHHHHHHHHhhhcccCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCcc-
Q 025674 124 YD--AGKAEY------FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT- 194 (249)
Q Consensus 124 ~~--a~~~~~------~~~~~~l~~~qi~l~g~vE~~~~~~~~~pG~~~~~~~f~~~~~~~~e~gyPGd~FDPLgl~~~- 194 (249)
.+ .+...| +..++.++++|++++|++|..|+.+. + ..+..||||.|||||+.++
T Consensus 119 ~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~~--------~---------~~~~~yPgg~fDPlgl~~~~ 181 (241)
T 2wsc_1 119 AALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK--------D---------PEKKKYPGGAFDPLGYSKDP 181 (241)
T ss_dssp CSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSCC--------S---------SCCSSSCSCCSCSSSCSCSS
T ss_pred hccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhcc--------C---------CCCCCCCCCcccccccccch
Confidence 21 111122 12345677889988999999886421 1 1234699999999999876
Q ss_pred ---hHHHHHHHhhhhHHHHHHHHHHHHh-hccCCcchhhhhhhhcCCcccccccccc
Q 025674 195 ---DEAKEKELANGRLAMLAFLGFIVQH-NVTGKGPFENLLQHISDPWHNTIVQTLS 247 (249)
Q Consensus 195 ---~e~k~kELkNGRLAMlAi~G~~~Qe-~vtG~gPl~~L~~hl~~P~~~ni~~~~~ 247 (249)
+++|.+|||||||||+||+|+++|+ .+||++|++||.+|++|||||||++++.
T Consensus 182 ~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~~~~~ 238 (241)
T 2wsc_1 182 KKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238 (241)
T ss_dssp SSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC--------
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccceeeeec
Confidence 3578999999999999999999999 5899999999999999999999999874
No 7
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.46 E-value=1.2e-14 Score=129.26 Aligned_cols=52 Identities=40% Similarity=0.664 Sum_probs=49.2
Q ss_pred CCCCCCCccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcC
Q 025674 66 SLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118 (249)
Q Consensus 66 ~~pGd~gfDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~ 118 (249)
..|||+ ||||||++|+++++++|++||||||+||+|++|+++||++++.|++
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl 223 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPL 223 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChH
Confidence 579999 9999999999999999999999999999999999999999988764
No 8
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.43 E-value=1.5e-14 Score=131.01 Aligned_cols=55 Identities=33% Similarity=0.558 Sum_probs=46.3
Q ss_pred CCCCCCCCCccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcC
Q 025674 64 NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118 (249)
Q Consensus 64 ~g~~pGd~gfDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~ 118 (249)
|...|||++||||||++|+++++++|++||||||+||||++|+++||++++.|++
T Consensus 200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~ 254 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPY 254 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCS
T ss_pred cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChH
Confidence 4568999999999999988889999999999999999999999999999988764
No 9
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.41 E-value=7e-14 Score=123.84 Aligned_cols=55 Identities=38% Similarity=0.666 Sum_probs=50.5
Q ss_pred CCCCCCCCCCccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcC
Q 025674 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118 (249)
Q Consensus 63 l~g~~pGd~gfDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~ 118 (249)
.|...|||+ ||||||.+|+++++++|.+||||||+||+|++|++++|++++.|++
T Consensus 152 ~d~~~Pg~~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~ 206 (232)
T 2bhw_A 152 VDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 206 (232)
T ss_dssp SSSSCCCTT-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSH
T ss_pred ccccCCCcc-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChH
Confidence 355689998 9999999999999999999999999999999999999999987753
No 10
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.38 E-value=2.8e-14 Score=128.74 Aligned_cols=55 Identities=38% Similarity=0.613 Sum_probs=50.2
Q ss_pred CCCCCCCCCccccCCCC-ChHHHHHHHHhhHhcCCchhhhhhHhhhhhhhhccCcC
Q 025674 64 NGSLPGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118 (249)
Q Consensus 64 ~g~~pGd~gfDPlgl~~-~~~~l~~~reaElkHGR~AMlA~~G~~~~e~~~~~G~~ 118 (249)
|...|||++||||||.+ |+++++++|.+||||||+||+|++|++++|++++.|++
T Consensus 192 d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l 247 (269)
T 2wsc_2 192 DVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 247 (269)
T ss_dssp SCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSS
T ss_pred ccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChH
Confidence 34689999999999985 78889999999999999999999999999999998875
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.28 E-value=2.3e-13 Score=121.08 Aligned_cols=54 Identities=33% Similarity=0.648 Sum_probs=48.0
Q ss_pred CCCCCCCCCccccCCCCChHHHHHHHHhhHhcCCchhhhhhHhhhhh-hhhccCcC
Q 025674 64 NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPE-VFTKIGII 118 (249)
Q Consensus 64 ~g~~pGd~gfDPlgl~~~~~~l~~~reaElkHGR~AMlA~~G~~~~e-~~~~~G~~ 118 (249)
++..||+ +|||+||.+|+++++++|.+||||||+||+|++|++++| .+++.|++
T Consensus 164 ~~~yPgg-~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl 218 (241)
T 2wsc_1 164 KKKYPGG-AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 218 (241)
T ss_dssp CSSSCSC-CSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCC
T ss_pred CCCCCCC-cccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchH
Confidence 3467888 599999999999999999999999999999999999999 46777764
No 12
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.27 E-value=4.3e-13 Score=119.99 Aligned_cols=49 Identities=35% Similarity=0.502 Sum_probs=33.4
Q ss_pred CCCCCC-CCCCCCCCcc----hHHHHHHHhhhhHHHHHHHHHHHHhhccCCcch
Q 025674 179 VGYPGG-IFNPLNFAPT----DEAKEKELANGRLAMLAFLGFIVQHNVTGKGPF 227 (249)
Q Consensus 179 ~gyPGd-~FDPLgl~~~----~e~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl 227 (249)
..+||| +||||||+++ +++|.+||||||+||+|++|+++||++++.+++
T Consensus 68 g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 68 GSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp -------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 347999 8999999876 457999999999999999999999999998765
No 13
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=27.54 E-value=36 Score=19.42 Aligned_cols=14 Identities=29% Similarity=0.226 Sum_probs=11.5
Q ss_pred hHHHHHHHHhhHhc
Q 025674 82 PENLKWYVQAELVN 95 (249)
Q Consensus 82 ~~~l~~~reaElkH 95 (249)
+|-+..+||+|+|.
T Consensus 6 qemlenlreaevkk 19 (26)
T 2dpr_A 6 QEMLENLREAEVKK 19 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 46788999999985
Done!