Query 025675
Match_columns 249
No_of_seqs 119 out of 1184
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:19:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025675.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025675hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 3.5E-28 7.5E-33 218.9 21.2 229 2-237 10-250 (358)
2 PRK11272 putative DMT superfam 99.9 2.6E-21 5.6E-26 170.1 20.9 188 8-229 11-200 (292)
3 PRK11453 O-acetylserine/cystei 99.9 3.3E-21 7.1E-26 170.0 18.9 190 5-229 4-197 (299)
4 TIGR00950 2A78 Carboxylate/Ami 99.9 1.8E-20 4E-25 161.2 18.5 179 17-229 1-181 (260)
5 PRK11689 aromatic amino acid e 99.9 1.9E-20 4.2E-25 164.8 18.7 181 3-209 2-187 (295)
6 TIGR00688 rarD rarD protein. T 99.9 2.8E-20 6E-25 160.4 18.5 166 4-202 1-171 (256)
7 PRK15430 putative chlorampheni 99.9 3.9E-20 8.5E-25 162.9 17.5 185 2-220 5-193 (296)
8 TIGR00817 tpt Tpt phosphate/ph 99.8 4.9E-19 1.1E-23 156.2 22.1 186 15-230 12-199 (302)
9 PRK10532 threonine and homoser 99.8 3.8E-18 8.3E-23 150.1 21.1 188 4-229 11-198 (293)
10 PTZ00343 triose or hexose phos 99.8 5.6E-17 1.2E-21 146.2 21.9 196 5-230 49-253 (350)
11 PF06027 DUF914: Eukaryotic pr 99.8 9.5E-17 2.1E-21 142.7 20.0 199 14-231 22-221 (334)
12 TIGR03340 phn_DUF6 phosphonate 99.7 3.1E-16 6.7E-21 137.1 17.3 169 7-204 3-171 (281)
13 COG2510 Predicted membrane pro 99.6 1.7E-15 3.6E-20 114.6 10.2 136 5-148 3-138 (140)
14 COG0697 RhaT Permeases of the 99.6 7.2E-14 1.6E-18 121.0 20.3 183 4-215 6-191 (292)
15 PF00892 EamA: EamA-like trans 99.6 4.9E-15 1.1E-19 112.8 8.1 124 15-148 1-125 (126)
16 TIGR00776 RhaT RhaT L-rhamnose 99.5 5.1E-13 1.1E-17 117.5 16.2 181 6-215 2-187 (290)
17 KOG4510 Permease of the drug/m 99.5 1.9E-14 4.1E-19 121.7 2.8 202 7-228 40-241 (346)
18 TIGR00950 2A78 Carboxylate/Ami 99.4 3E-12 6.5E-17 110.1 13.7 130 4-144 127-259 (260)
19 COG2962 RarD Predicted permeas 99.4 4E-11 8.6E-16 103.1 17.9 193 4-232 6-200 (293)
20 COG5006 rhtA Threonine/homoser 99.3 1E-10 2.2E-15 98.5 17.0 186 6-228 13-198 (292)
21 PRK10532 threonine and homoser 99.3 1.4E-10 3.1E-15 102.0 14.7 134 5-150 148-282 (293)
22 PF13536 EmrE: Multidrug resis 99.3 8.3E-12 1.8E-16 94.6 5.6 103 39-149 2-106 (113)
23 PRK11272 putative DMT superfam 99.2 1.2E-10 2.7E-15 102.3 13.1 135 5-149 150-285 (292)
24 KOG2765 Predicted membrane pro 99.2 2E-10 4.4E-15 101.5 12.3 137 74-228 162-301 (416)
25 PLN00411 nodulin MtN21 family 99.2 6.2E-10 1.3E-14 100.6 15.0 136 6-150 190-329 (358)
26 PF08449 UAA: UAA transporter 99.2 5.2E-09 1.1E-13 92.5 20.2 174 33-227 31-205 (303)
27 PRK11689 aromatic amino acid e 99.2 4.5E-10 9.7E-15 98.9 12.7 132 5-149 156-287 (295)
28 PRK11453 O-acetylserine/cystei 99.0 5.4E-09 1.2E-13 92.2 14.0 137 5-148 143-286 (299)
29 TIGR03340 phn_DUF6 phosphonate 99.0 1.8E-09 3.8E-14 94.4 10.3 132 5-146 144-280 (281)
30 TIGR00817 tpt Tpt phosphate/ph 99.0 4.1E-09 8.9E-14 93.0 10.6 140 4-150 144-294 (302)
31 KOG2766 Predicted membrane pro 98.9 1.2E-10 2.6E-15 98.3 -0.1 188 15-230 29-217 (336)
32 PF04142 Nuc_sug_transp: Nucle 98.8 1.7E-07 3.7E-12 80.5 14.9 152 67-227 13-165 (244)
33 PRK15430 putative chlorampheni 98.8 7E-08 1.5E-12 85.0 12.2 131 8-148 152-284 (296)
34 PF03151 TPT: Triose-phosphate 98.8 1.3E-07 2.7E-12 74.9 12.4 134 6-146 1-150 (153)
35 KOG1441 Glucose-6-phosphate/ph 98.8 8.9E-08 1.9E-12 84.7 12.4 181 22-231 34-221 (316)
36 TIGR00776 RhaT RhaT L-rhamnose 98.8 1.2E-07 2.6E-12 83.5 12.1 130 4-149 151-288 (290)
37 PTZ00343 triose or hexose phos 98.8 2.2E-07 4.8E-12 83.9 14.0 138 4-148 193-347 (350)
38 COG0697 RhaT Permeases of the 98.7 4.7E-07 1E-11 78.2 13.5 131 5-148 154-286 (292)
39 KOG3912 Predicted integral mem 98.6 2E-06 4.3E-11 73.9 15.1 192 18-227 16-227 (372)
40 PRK15051 4-amino-4-deoxy-L-ara 98.6 4.8E-07 1E-11 68.4 8.6 67 76-148 41-108 (111)
41 PF06027 DUF914: Eukaryotic pr 98.4 3.2E-06 6.9E-11 75.6 12.0 138 4-149 167-305 (334)
42 KOG2234 Predicted UDP-galactos 98.3 0.00024 5.3E-09 63.1 21.4 203 7-225 17-232 (345)
43 COG5006 rhtA Threonine/homoser 98.3 5.7E-06 1.2E-10 70.2 10.3 132 5-147 148-280 (292)
44 PRK02971 4-amino-4-deoxy-L-ara 98.3 8.2E-06 1.8E-10 63.3 10.4 117 5-148 2-121 (129)
45 KOG4314 Predicted carbohydrate 98.3 2.1E-06 4.5E-11 70.3 7.3 99 82-204 64-162 (290)
46 KOG1443 Predicted integral mem 98.2 3.2E-05 6.9E-10 67.4 12.5 171 34-231 45-222 (349)
47 PF06800 Sugar_transport: Suga 98.0 0.00048 1E-08 59.7 16.0 135 68-220 42-177 (269)
48 KOG1444 Nucleotide-sugar trans 97.9 0.0013 2.9E-08 57.7 16.3 192 10-230 17-211 (314)
49 PRK13499 rhamnose-proton sympo 97.7 0.0013 2.9E-08 59.0 14.8 176 4-193 6-190 (345)
50 PF08449 UAA: UAA transporter 97.7 0.00042 9.1E-09 61.3 11.4 137 6-149 155-297 (303)
51 PF06800 Sugar_transport: Suga 97.7 0.00027 5.9E-09 61.2 9.7 131 4-145 137-267 (269)
52 TIGR00688 rarD rarD protein. T 97.7 0.00074 1.6E-08 58.0 12.2 106 9-118 150-255 (256)
53 COG2962 RarD Predicted permeas 97.4 0.0035 7.7E-08 54.5 12.2 129 10-148 153-282 (293)
54 KOG1441 Glucose-6-phosphate/ph 97.2 0.00092 2E-08 59.4 6.8 138 3-148 161-306 (316)
55 PRK10650 multidrug efflux syst 97.2 0.0033 7.1E-08 47.2 8.6 60 82-147 46-106 (109)
56 PF10639 UPF0546: Uncharacteri 97.1 0.00098 2.1E-08 50.3 5.1 109 11-147 2-112 (113)
57 PRK09541 emrE multidrug efflux 97.1 0.0047 1E-07 46.5 8.7 65 78-148 36-102 (110)
58 KOG1580 UDP-galactose transpor 97.1 0.0035 7.5E-08 53.1 8.5 170 34-227 53-223 (337)
59 COG4975 GlcU Putative glucose 97.1 9.7E-05 2.1E-09 62.6 -0.7 171 6-199 3-174 (288)
60 PRK10452 multidrug efflux syst 97.0 0.0036 7.8E-08 47.8 7.6 66 78-149 36-103 (120)
61 KOG2765 Predicted membrane pro 97.0 0.0045 9.8E-08 55.6 9.1 140 4-150 246-391 (416)
62 KOG4510 Permease of the drug/m 97.0 0.00035 7.5E-09 60.0 2.0 136 6-151 192-327 (346)
63 KOG1442 GDP-fucose transporter 97.0 0.0078 1.7E-07 52.1 9.7 173 33-229 60-238 (347)
64 KOG1581 UDP-galactose transpor 96.9 0.068 1.5E-06 46.9 15.3 170 33-224 50-220 (327)
65 COG2076 EmrE Membrane transpor 96.8 0.0026 5.5E-08 47.3 5.2 61 82-148 41-102 (106)
66 PF00893 Multi_Drug_Res: Small 96.8 0.008 1.7E-07 43.7 7.3 52 82-139 40-92 (93)
67 PRK11431 multidrug efflux syst 96.7 0.012 2.6E-07 43.9 8.1 61 82-148 40-101 (105)
68 PRK13499 rhamnose-proton sympo 96.6 0.073 1.6E-06 48.0 13.7 145 4-149 173-341 (345)
69 PF04657 DUF606: Protein of un 96.6 0.03 6.5E-07 43.9 9.8 105 33-146 29-138 (138)
70 KOG2922 Uncharacterized conser 96.0 0.048 1E-06 48.2 8.6 73 74-153 66-139 (335)
71 PF05653 Mg_trans_NIPA: Magnes 95.9 0.011 2.3E-07 52.4 4.6 68 76-149 54-122 (300)
72 KOG1583 UDP-N-acetylglucosamin 95.5 0.12 2.6E-06 44.9 9.1 180 35-231 34-215 (330)
73 KOG1580 UDP-galactose transpor 95.0 0.041 8.8E-07 46.8 4.8 73 70-148 240-312 (337)
74 TIGR00803 nst UDP-galactose tr 94.7 0.083 1.8E-06 44.3 6.0 63 77-145 158-220 (222)
75 PF07857 DUF1632: CEO family ( 94.6 0.46 9.9E-06 41.1 10.4 215 6-232 1-249 (254)
76 COG3238 Uncharacterized protei 94.3 0.63 1.4E-05 36.9 9.6 135 3-146 3-143 (150)
77 KOG1581 UDP-galactose transpor 94.2 0.57 1.2E-05 41.3 10.1 136 6-149 173-313 (327)
78 PF03151 TPT: Triose-phosphate 94.0 0.26 5.7E-06 38.4 7.1 54 178-231 1-60 (153)
79 KOG1444 Nucleotide-sugar trans 93.8 0.54 1.2E-05 41.6 9.3 137 5-148 157-299 (314)
80 COG5070 VRG4 Nucleotide-sugar 93.5 0.36 7.8E-06 40.8 7.2 171 34-230 37-209 (309)
81 KOG1582 UDP-galactose transpor 90.5 0.73 1.6E-05 40.2 5.9 178 31-238 70-252 (367)
82 COG4975 GlcU Putative glucose 90.4 0.17 3.7E-06 43.3 2.0 75 72-148 210-284 (288)
83 KOG1443 Predicted integral mem 90.2 4.5 9.7E-05 35.9 10.5 135 5-146 164-312 (349)
84 PF04142 Nuc_sug_transp: Nucle 89.9 5.2 0.00011 34.3 10.8 127 5-138 114-242 (244)
85 PF00892 EamA: EamA-like trans 87.5 0.72 1.6E-05 34.0 3.5 42 187-230 1-42 (126)
86 KOG3912 Predicted integral mem 87.4 4.4 9.5E-05 35.6 8.5 136 5-147 176-332 (372)
87 COG5070 VRG4 Nucleotide-sugar 86.1 2.9 6.3E-05 35.5 6.5 111 32-149 183-296 (309)
88 KOG4831 Unnamed protein [Funct 82.2 18 0.0004 26.9 10.1 113 6-148 4-124 (125)
89 PF06379 RhaT: L-rhamnose-prot 82.1 30 0.00065 31.2 11.5 210 5-228 7-235 (344)
90 COG2510 Predicted membrane pro 79.2 10 0.00022 29.4 6.6 50 179-229 5-54 (140)
91 TIGR00803 nst UDP-galactose tr 77.6 12 0.00025 31.2 7.4 99 98-203 5-111 (222)
92 KOG1582 UDP-galactose transpor 76.3 5.2 0.00011 35.0 4.8 114 31-151 217-334 (367)
93 KOG2766 Predicted membrane pro 73.5 4 8.7E-05 35.4 3.4 131 5-147 166-297 (336)
94 PF04657 DUF606: Protein of un 73.1 21 0.00047 27.7 7.3 52 179-230 3-54 (138)
95 KOG1442 GDP-fucose transporter 71.5 13 0.00029 32.6 6.1 140 5-151 185-329 (347)
96 COG3238 Uncharacterized protei 62.2 60 0.0013 25.7 7.7 55 176-230 4-58 (150)
97 PRK02237 hypothetical protein; 61.5 7.5 0.00016 29.0 2.4 38 106-149 68-105 (109)
98 PF02694 UPF0060: Uncharacteri 57.7 7.8 0.00017 28.8 1.9 38 106-149 66-103 (107)
99 PF04342 DUF486: Protein of un 57.6 44 0.00095 24.9 5.8 50 91-146 55-105 (108)
100 PF06570 DUF1129: Protein of u 49.2 1.5E+02 0.0033 24.4 10.8 36 82-120 157-192 (206)
101 PF05653 Mg_trans_NIPA: Magnes 47.6 28 0.00061 30.8 4.2 67 83-149 225-292 (300)
102 KOG3817 Uncharacterized conser 39.2 1.4E+02 0.0031 27.3 7.1 85 16-105 200-285 (452)
103 PF09656 PGPGW: Putative trans 37.9 1.1E+02 0.0024 19.7 4.7 46 133-203 5-50 (53)
104 COG4657 RnfA Predicted NADH:ub 34.1 1.9E+02 0.0042 23.4 6.4 52 174-225 129-185 (193)
105 COG1742 Uncharacterized conser 33.9 26 0.00056 26.0 1.4 38 106-149 67-104 (109)
106 COG3086 RseC Positive regulato 30.8 36 0.00079 26.8 1.9 29 90-118 67-95 (150)
107 PF11381 DUF3185: Protein of u 24.9 47 0.001 22.0 1.3 17 133-149 1-17 (59)
108 PF06570 DUF1129: Protein of u 23.9 4E+02 0.0087 21.9 7.2 22 178-199 180-201 (206)
109 PRK10862 SoxR reducing system 23.3 49 0.0011 26.2 1.5 29 90-118 67-95 (154)
110 CHL00196 psbY photosystem II p 23.3 1.7E+02 0.0038 17.3 3.7 20 177-196 6-25 (36)
111 PF04246 RseC_MucC: Positive r 20.4 44 0.00096 25.6 0.7 27 92-118 62-88 (135)
112 PF06298 PsbY: Photosystem II 20.1 2.1E+02 0.0045 16.9 3.7 20 177-196 6-25 (36)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.96 E-value=3.5e-28 Score=218.90 Aligned_cols=229 Identities=39% Similarity=0.649 Sum_probs=182.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH
Q 025675 2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS 81 (249)
Q Consensus 2 ~~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (249)
|+.++++.|+.+++.+++..++.|.+++.|++|..+.++|+.+|+++ ++++.+.++|++++++.+++++..+.+.|+++
T Consensus 10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~-Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g 88 (358)
T PLN00411 10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLL-LLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG 88 (358)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHH-HHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999 88887765543333556788888888899988
Q ss_pred HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHH------hhcccceeeccccceeehHHHhhhhhhhhhhccCCcc
Q 025675 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALIS------RMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPAL 155 (249)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~------~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~ 155 (249)
+.++.+++.|++|+++++++++.++.|+++.++++++ ++||++++ +++|++++++|+.++...+++..
T Consensus 89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~~~ 162 (358)
T PLN00411 89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGPRV 162 (358)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHH------HHHHHHHHHHHHHHHHHccCccc
Confidence 6677799999999999999999999999999999999 57777777 99999999999998875444321
Q ss_pred cccCC-C---CCCC-CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 025675 156 VSMSS-S---SNLH-NELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER 230 (249)
Q Consensus 156 ~~~~~-~---~~~~-~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~ 230 (249)
...++ + .+++ +++.....+...|+++++.++++||+|++++|+..+++|++...++|++.++++...+.....++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~ 242 (358)
T PLN00411 163 FVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEK 242 (358)
T ss_pred ccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 00000 0 0000 01112223456799999999999999999999999999766678889999999888888777664
Q ss_pred C-CCCccc
Q 025675 231 N-PNSWRL 237 (249)
Q Consensus 231 ~-~~~~~~ 237 (249)
+ ...|..
T Consensus 243 ~~~~~~~~ 250 (358)
T PLN00411 243 NNPSVWII 250 (358)
T ss_pred CCccccee
Confidence 3 444543
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.89 E-value=2.6e-21 Score=170.12 Aligned_cols=188 Identities=12% Similarity=0.099 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 025675 8 AVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQT 86 (249)
Q Consensus 8 ~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~ 86 (249)
+..+...++||.++++.|.+.++ +||.+++++|+.+++++ ++++...+ | .+ +.+++++......|.++ ..++.
T Consensus 11 ~~~~~~~~iWg~~~~~~K~~~~~-~~p~~~~~~R~~~a~l~-ll~~~~~~-~-~~--~~~~~~~~~~~~~g~~~~~~~~~ 84 (292)
T PRK11272 11 GALFALYIIWGSTYLVIRIGVES-WPPLMMAGVRFLIAGIL-LLAFLLLR-G-HP--LPTLRQWLNAALIGLLLLAVGNG 84 (292)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcc-CCHHHHHHHHHHHHHHH-HHHHHHHh-C-CC--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999998885 99999999999999998 87775432 2 22 23456777778888887 77888
Q ss_pred HHHHhh-cccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCC
Q 025675 87 CLYVGI-GYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLH 165 (249)
Q Consensus 87 ~~~~gl-~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~ 165 (249)
+++.+. +++++++++++.++.|+++.+++.+ +|||++++ +++|++++++|+.++.. ++.
T Consensus 85 ~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~-~~~------------ 144 (292)
T PRK11272 85 MVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNS-GGN------------ 144 (292)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhc-Ccc------------
Confidence 999999 9999999999999999999999986 69999999 99999999999987652 111
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 025675 166 NELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAE 229 (249)
Q Consensus 166 ~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~ 229 (249)
.+....|++++++++++||.|.+..||..++. +...+.+++..+++.+.+.....+
T Consensus 145 ------~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 200 (292)
T PRK11272 145 ------LSGNPWGAILILIASASWAFGSVWSSRLPLPV--GMMAGAAEMLAAGVVLLIASLLSG 200 (292)
T ss_pred ------cccchHHHHHHHHHHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHcC
Confidence 11234799999999999999999999976543 356778999999998888776554
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.88 E-value=3.3e-21 Score=169.99 Aligned_cols=190 Identities=17% Similarity=0.187 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 025675 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC 83 (249)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 83 (249)
+..+..++++++||.++++.|.+.++ +||..+.++|+.++++. ++++. + + ++.+++ .....|+.. ..
T Consensus 4 ~~~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~-l~~~~--~-~----~~~~~~---~~~~~g~~~~~~ 71 (299)
T PRK11453 4 KDGVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFP-AIFFV--A-R----PKVPLN---LLLGYGLTISFG 71 (299)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHH-HHHHh--c-C----CCCchH---HHHHHHHHHHHH
Confidence 44566889999999999999999886 99999999999998877 65543 1 2 122332 234446655 56
Q ss_pred HHHHHHHhhcc-cCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCC
Q 025675 84 VQTCLYVGIGY-SSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS 162 (249)
Q Consensus 84 ~~~~~~~gl~~-~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~ 162 (249)
.+.+++.++++ .++++++++.++.|+++.+++++++|||++++ +++|++++++|+.++.. ++.+
T Consensus 72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~-~~~~-------- 136 (299)
T PRK11453 72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE-DSLN-------- 136 (299)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc-ccCC--------
Confidence 66678899998 58899999999999999999999999999999 99999999999988762 1110
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCch--hHHHHHHHHHHHHHHHHHHHHhh
Q 025675 163 NLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEE--LMATFICCVFVTIQSTVVALIAE 229 (249)
Q Consensus 163 ~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~--~~~~~~~~~~g~i~~~~~~~~~~ 229 (249)
.......|+++++.++++|+.|++++||..++.+++ ...+.+++.++.+.........+
T Consensus 137 --------~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (299)
T PRK11453 137 --------GQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILD 197 (299)
T ss_pred --------CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 112234799999999999999999999987665432 34456666666655554444443
No 4
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.86 E-value=1.8e-20 Score=161.24 Aligned_cols=179 Identities=13% Similarity=0.108 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhccc
Q 025675 17 EVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQTCLYVGIGYS 95 (249)
Q Consensus 17 wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~gl~~~ 95 (249)
||.+++..|...+++.||..+.++|.+.+.+. +.+.... | + +++++......|.++ .+++.+++.|++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~-l~~~~~~--~--~----~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLL-LLPLLRR--R--P----PLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHHHHHh--c--c----CHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999887789999999999999887 7665422 2 1 233445677788888 89999999999999
Q ss_pred CchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCch
Q 025675 96 SPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNW 175 (249)
Q Consensus 96 ~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (249)
++++++++.++.|+++.+++.+++|||++++ +++|++++++|+.++.. +++ .+..
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~-~~~------------------~~~~ 126 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS-DGN------------------LSIN 126 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc-CCc------------------cccc
Confidence 9999999999999999999999999999999 99999999999988752 111 1234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHHHHhh
Q 025675 176 IIGGLVLAAGSFFLSLLYIVQTSIIREYPE-ELMATFICCVFVTIQSTVVALIAE 229 (249)
Q Consensus 176 ~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~g~i~~~~~~~~~~ 229 (249)
..|+.+++.++++|+.+.+..||..++.++ +...+.+++..+++...+.....+
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLG 181 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 679999999999999999999999877652 235555788999999888877654
No 5
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.86 E-value=1.9e-20 Score=164.83 Aligned_cols=181 Identities=14% Similarity=0.066 Sum_probs=136.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-
Q 025675 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS- 81 (249)
Q Consensus 3 ~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~- 81 (249)
|.+.++.++.++++||.+++..|.+.++ +||..+.++|+.+++++ ++++. ++++. ++.++ . ....+.++
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~-l~~~~---~~~~~-~~~~~---~-~~~~~~l~~ 71 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLL-LLLTV---GFPRL-RQFPK---R-YLLAGGLLF 71 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHH-HHHHc---ccccc-ccccH---H-HHHHHhHHH
Confidence 5678889999999999999999999887 99999999999999988 77642 12111 22222 2 23344445
Q ss_pred HHHHHHHHHhhc----ccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccc
Q 025675 82 CCVQTCLYVGIG----YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVS 157 (249)
Q Consensus 82 ~~~~~~~~~gl~----~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~ 157 (249)
+.+..+++.|++ ++++++++++.++.|+++.+++++++|||++++ +++|++++++|+.++... ++....
T Consensus 72 ~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~-~~~~~~ 144 (295)
T PRK11689 72 VSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGG-DNGLSL 144 (295)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecC-Cccchh
Confidence 677777777775 468889999999999999999999999999999 999999999999887632 110000
Q ss_pred cCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHH
Q 025675 158 MSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMA 209 (249)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~ 209 (249)
++ ...+..+...|+++++.|+++||.|+++.||..++.+ +.+.
T Consensus 145 ------~~--~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~ 187 (295)
T PRK11689 145 ------AE--LINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITL 187 (295)
T ss_pred ------hh--hhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhH
Confidence 00 0001112356999999999999999999999987765 5543
No 6
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.86 E-value=2.8e-20 Score=160.42 Aligned_cols=166 Identities=11% Similarity=0.046 Sum_probs=132.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccC----CCCCCCHH-HHHHHHHHH
Q 025675 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNR----TRPPLTVS-IICKIFGLG 78 (249)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~----~~~~~~~~-~~~~~~~~g 78 (249)
+|+++.+++++++||.++++.|. .++ +||.++.++|+++++++ ++++...++|++ +.++.+++ .+..+...|
T Consensus 1 ~~g~~~~i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 77 (256)
T TIGR00688 1 FKGIIVSLLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPF-MLLSVTLFRQWAALIERLKRIQKRPLILSLLLCG 77 (256)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHH-HHHHHHHHcchHHHHHHHhCcccchHHHHHHHHH
Confidence 36889999999999999999998 454 99999999999999988 777654433211 10112222 234456667
Q ss_pred HHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCccccc
Q 025675 79 LISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSM 158 (249)
Q Consensus 79 ~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~ 158 (249)
+....++.++++|++++++++++++.++.|+++.+++++++|||++++ ++.|++++++|++++...++
T Consensus 78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~~------ 145 (256)
T TIGR00688 78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLKG------ 145 (256)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHcC------
Confidence 766889999999999999999999999999999999999999999999 99999999999988752111
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025675 159 SSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIRE 202 (249)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~ 202 (249)
+.. .++++++++||.|.+..|+..++
T Consensus 146 --------------~~~----~~~l~aa~~~a~~~i~~~~~~~~ 171 (256)
T TIGR00688 146 --------------SLP----WEALVLAFSFTAYGLIRKALKNT 171 (256)
T ss_pred --------------Cch----HHHHHHHHHHHHHHHHHhhcCCC
Confidence 111 35788999999999999987543
No 7
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.85 E-value=3.9e-20 Score=162.94 Aligned_cols=185 Identities=12% Similarity=0.022 Sum_probs=139.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCC-C-CCCHHHHHHHHHHHH
Q 025675 2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR-P-PLTVSIICKIFGLGL 79 (249)
Q Consensus 2 ~~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~-~-~~~~~~~~~~~~~g~ 79 (249)
++.|+.+++++++++||.+++..|.. ++ +||.++.++|++++.++ ++++...+++..+. + ..+++++.. ...+.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~-~~~~~~~~~R~~~a~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 80 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YY-VPADEILTHRVIWSFFF-MVVLMSICRQWSYLKTLIQTPQKIFM-LAVSA 80 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHH-HHHHHHHHccHHHHHHHHcCHHHHHH-HHHHH
Confidence 34588999999999999999999975 44 99999999999999988 77665443221110 0 113444333 33565
Q ss_pred HH-HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCccccc
Q 025675 80 IS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSM 158 (249)
Q Consensus 80 ~~-~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~ 158 (249)
++ +.++.++++|++++++++++++.++.|+++.+++++++|||++++ +++|++++++|+.++...++
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~~------ 148 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTFG------ 148 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHcC------
Confidence 66 889999999999999999999999999999999999999999999 99999999999988762111
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHH
Q 025675 159 SSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP-EELMATFICCVFVTIQ 220 (249)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~i~ 220 (249)
+. ..+.++++++||.|++..||..++.. +....+.+++.++.+.
T Consensus 149 --------------~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~ 193 (296)
T PRK15430 149 --------------SL----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIY 193 (296)
T ss_pred --------------Cc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH
Confidence 11 14688899999999999888753221 1234445555555544
No 8
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.84 E-value=4.9e-19 Score=156.19 Aligned_cols=186 Identities=11% Similarity=0.085 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025675 15 CLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGY 94 (249)
Q Consensus 15 ~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~ 94 (249)
++-....+.-|.++++-.+|..+++.|+.++.+. +.+. +..+.+++ ++.++++++.++..|++++....+.+.|++|
T Consensus 12 ~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~-~~~~-~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~ 88 (302)
T TIGR00817 12 FLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLY-CLLS-WSSGLPKR-LKISSALLKLLLPVAIVHTIGHVTSNVSLSK 88 (302)
T ss_pred HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH-HHHH-HHhCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444578988876467999999999999877 5554 21122222 4567888999999999997888999999999
Q ss_pred cCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCc
Q 025675 95 SSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKN 174 (249)
Q Consensus 95 ~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (249)
+++++++++.++.|+++.+++++++|||++++ ++.|++++++|+.+.. .++ .+.
T Consensus 89 ~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~--~~~------------------~~~ 142 (302)
T TIGR00817 89 VAVSFTHTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS--DTE------------------LSF 142 (302)
T ss_pred ccHHHHHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc--CCc------------------ccc
Confidence 99999999999999999999999999999999 9999999999997643 111 122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 025675 175 WIIGGLVLAAGSFFLSLLYIVQTSIIR--EYPEELMATFICCVFVTIQSTVVALIAER 230 (249)
Q Consensus 175 ~~~G~~~~l~aa~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~g~i~~~~~~~~~~~ 230 (249)
...|++++++|+++|++|+++.||..+ +.+ +.+.+.+++.++++.+.|+....|+
T Consensus 143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~ 199 (302)
T TIGR00817 143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEG 199 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcc
Confidence 356999999999999999999999887 665 6899999999999999999877653
No 9
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.81 E-value=3.8e-18 Score=150.10 Aligned_cols=188 Identities=7% Similarity=0.002 Sum_probs=147.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHH
Q 025675 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCC 83 (249)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 83 (249)
.+++.+++++++.|+.++.+.|.+.++ +||.++.++|+++++++ ++++.. +++ ++.++|++...+..|+....
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~-l~~~~~--~~~---~~~~~~~~~~~~~~g~~~~~ 83 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLI-LIAIFK--PWR---LRFAKEQRLPLLFYGVSLGG 83 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHH-HHHHHh--HHh---ccCCHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999987 99999999999999988 776542 121 22355666777788887777
Q ss_pred HHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCC
Q 025675 84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSN 163 (249)
Q Consensus 84 ~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~ 163 (249)
.+.++++|++|+|+++++++.++.|+++.+++ +||.+ +..++.++++|+.++.. .+.+
T Consensus 84 ~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~~-~~~~--------- 141 (293)
T PRK10532 84 MNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLLP-LGQD--------- 141 (293)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheeee-cCCC---------
Confidence 77889999999999999999999999998876 35443 44667888999987652 1110
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 025675 164 LHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAE 229 (249)
Q Consensus 164 ~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~ 229 (249)
.++....|+++.++++++||.|++..||..++.+ +... .++..++++...++....+
T Consensus 142 -------~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~ 198 (293)
T PRK10532 142 -------VSHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQA 198 (293)
T ss_pred -------cccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHcc
Confidence 1122357999999999999999999999987765 5665 5677888888887766543
No 10
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.78 E-value=5.6e-17 Score=146.15 Aligned_cols=196 Identities=14% Similarity=0.118 Sum_probs=151.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCC--CHHHHHHHHHHHHHH
Q 025675 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPL--TVSIICKIFGLGLIS 81 (249)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~ 81 (249)
+.....+.--.+-.......|.+++. .| |..++.+|++++.+. +.+... .+.+++ ++. .+++++.++.+|+++
T Consensus 49 ~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~-~~~~~~-~~~~~~-~~~~~~~~~~~~llp~gl~~ 124 (350)
T PTZ00343 49 KLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLF-ALLYWA-TGFRKI-PRIKSLKLFLKNFLPQGLCH 124 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHH-HHHHHH-hCCCCC-CCCCCHHHHHHHHHHHHHHH
Confidence 33444444444445566788999987 99 999999999999877 555432 222222 333 234677888999998
Q ss_pred HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCC
Q 025675 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS 161 (249)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~ 161 (249)
...+...+.|+++++++.+.++-+++|+++.+++++++|||++++ ++.++++++.|+.+... ++
T Consensus 125 ~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~-~~--------- 188 (350)
T PTZ00343 125 LFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV-KE--------- 188 (350)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec-cc---------
Confidence 444555779999999999999999999999999999999999999 99999999999988652 11
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC------chhHHHHHHHHHHHHHHHHHHHHhhc
Q 025675 162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP------EELMATFICCVFVTIQSTVVALIAER 230 (249)
Q Consensus 162 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~------~~~~~~~~~~~~g~i~~~~~~~~~~~ 230 (249)
.+....|++++++++++|++++++.||..++.+ ++.+...+++.+|++.++|+....|.
T Consensus 189 ----------~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~ 253 (350)
T PTZ00343 189 ----------LHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEG 253 (350)
T ss_pred ----------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 112357999999999999999999999876532 24567777799999999999876653
No 11
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.76 E-value=9.5e-17 Score=142.71 Aligned_cols=199 Identities=18% Similarity=0.201 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025675 14 ECLEVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGI 92 (249)
Q Consensus 14 ~~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl 92 (249)
+++-.++...+....++|++ |..-+++-+..-.++ ..+....+++..+..+..++.+...++++++...++.+...|+
T Consensus 22 sl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~v-y~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~ 100 (334)
T PF06027_consen 22 SLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALV-YTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAY 100 (334)
T ss_pred HHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHH-HhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666666655665 666666666666555 5565544332211122223444667778998899999999999
Q ss_pred cccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCC
Q 025675 93 GYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQ 172 (249)
Q Consensus 93 ~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (249)
+||+.+.+.++....-+++.++|++++|||.++. +++|++++++|++++...|..+.+ +...+
T Consensus 101 ~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~~-----------~~~~~ 163 (334)
T PF06027_consen 101 QYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSGS-----------DSSSG 163 (334)
T ss_pred hcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecccccc-----------cCCCC
Confidence 9999999999999999999999999999999999 999999999999888754422110 11234
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhcC
Q 025675 173 KNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERN 231 (249)
Q Consensus 173 ~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~ 231 (249)
.+..+||++++.|+..||++++++++..++.+ +.....+..++|.+...+...++|++
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~ 221 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERS 221 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehh
Confidence 56789999999999999999999999999987 68999999999999999988888764
No 12
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.72 E-value=3.1e-16 Score=137.09 Aligned_cols=169 Identities=14% Similarity=0.114 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 025675 7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQT 86 (249)
Q Consensus 7 ~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 86 (249)
.++.+.++++|+...+..|...++ .++. .+++...+++. ++|+...+.++...+..+++.+......++.+..++.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~~--~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-EPDF--LWWALLAHSVL-LTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-hhHH--HHHHHHHHHHH-HHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 467789999999999999976655 3453 47777777777 7776654321111122333333334444444489999
Q ss_pred HHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCC
Q 025675 87 CLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHN 166 (249)
Q Consensus 87 ~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~ 166 (249)
+++.|++++++++++.+.++.|+++.+++++++|||++++ +++|+.+++.|+.++.. ++.
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~-~~~------------- 138 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGL-SRF------------- 138 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhc-ccc-------------
Confidence 9999999999999999999999999999999999999999 99999999999987762 111
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 025675 167 ELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP 204 (249)
Q Consensus 167 ~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~ 204 (249)
......|+.+.++++++|+.|+++.|+..++.+
T Consensus 139 -----~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~ 171 (281)
T TIGR03340 139 -----AQHRRKAYAWALAAALGTAIYSLSDKAAALGVP 171 (281)
T ss_pred -----cccchhHHHHHHHHHHHHHHhhhhccccccchh
Confidence 011235888999999999999999888755443
No 13
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.64 E-value=1.7e-15 Score=114.59 Aligned_cols=136 Identities=12% Similarity=0.088 Sum_probs=120.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHH
Q 025675 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCV 84 (249)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 84 (249)
...++.++++++||...++.|..+++ +||..-++.|.....+. +..+....++.......+.|.|..+.+-|+.+...
T Consensus 3 ~~~~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~-l~~v~~~~g~~~~~~~~~~k~~lflilSGla~gls 80 (140)
T COG2510 3 AAIIYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIF-LLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLS 80 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHH-HHHHHHhcCceecccccCcceehhhhHHHHHHHHH
Confidence 45678899999999999999999986 99999999999999988 77776665553332345778888888899888999
Q ss_pred HHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675 85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (249)
Q Consensus 85 ~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~ 148 (249)
+.+||.+++...++....+..+.|+++.++|+++++||++.+ +++|+.+..+|++++.
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs 138 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999999999 9999999999998764
No 14
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.62 E-value=7.2e-14 Score=121.00 Aligned_cols=183 Identities=20% Similarity=0.214 Sum_probs=137.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-H
Q 025675 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-C 82 (249)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~ 82 (249)
.......+...+.|+.+....|...+...++....+.|...+.+. ..+..... +... .+..++ +.+....+.++ .
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~-~~~~~~-~~~~~~~~~~~~~ 81 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALL-LLPLLLLE-PRGL-RPALRP-WLLLLLLALLGLA 81 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHH-HHHHHHhh-cccc-cccccc-hHHHHHHHHHHHH
Confidence 456677888889999999999998875356677777799988876 55443221 1111 111111 23455556666 8
Q ss_pred HHHHHHHHhhcccCchhhhhcccchHHHHHHHHH-HHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCC
Q 025675 83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILAL-ISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS 161 (249)
Q Consensus 83 ~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~-~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~ 161 (249)
..+.+++.+++++++++++.+.++.|+++.+++. ++++||++++ ++.|+.+++.|+.++...++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~~------- 148 (292)
T COG0697 82 LPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGGG------- 148 (292)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCcc-------
Confidence 9999999999999999999999999999999997 6779999999 9999999999998876322110
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHH-HHHH
Q 025675 162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATF-ICCV 215 (249)
Q Consensus 162 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~ 215 (249)
... ...|+.+++.++++|+++.+..|+.. +.+ +..... ++..
T Consensus 149 ---------~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~ 191 (292)
T COG0697 149 ---------GIL-SLLGLLLALAAALLWALYTALVKRLS-RLG-PVTLALLLQLL 191 (292)
T ss_pred ---------hhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHH
Confidence 011 56899999999999999999999887 554 455555 4444
No 15
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.58 E-value=4.9e-15 Score=112.77 Aligned_cols=124 Identities=22% Similarity=0.262 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhc
Q 025675 15 CLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQTCLYVGIG 93 (249)
Q Consensus 15 ~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~gl~ 93 (249)
++||.+.++.|...++ .||....++|+..+.+. +.... ..+++.. ++.+.+++......|.++ ..++.+++.|++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGIL-LILLL-ILGRKPF-KNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHHH-HHHHH-hhccccc-cCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 4699999999999987 99999999999999853 33322 2333222 456667778888889887 999999999999
Q ss_pred ccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675 94 YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (249)
Q Consensus 94 ~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~ 148 (249)
++++++++.+.+++|+++.+++++++||+++++ +++|+.+.+.|+.++.
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 9999999999998753
No 16
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.52 E-value=5.1e-13 Score=117.49 Aligned_cols=181 Identities=13% Similarity=0.055 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 025675 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ 85 (249)
Q Consensus 6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 85 (249)
+++..++++++||...+..|... |.++.++. |..++.++ +..+....++ . ++..++.+..-+..|+.....+
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~-~~~~~~~~~~-~--~~~~~~~~~~g~l~G~~w~ig~ 73 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALI-LSIAIAIFVL-P--EFWALSIFLVGLLSGAFWALGQ 73 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHH-HHHHHHHHhC-C--cccccHHHHHHHHHHHHHHhhh
Confidence 46788999999999999999865 58888776 78788877 6655544332 1 1122333343444444457788
Q ss_pred HHHHHhhcccCchhhhhccc-chHHHHHHHHHHHhhcccceeeccccce----eehHHHhhhhhhhhhhccCCcccccCC
Q 025675 86 TCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAK----SIGTMVSIAGALTVTLYKGPALVSMSS 160 (249)
Q Consensus 86 ~~~~~gl~~~~a~~a~ii~~-~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~----~~g~~l~~~Gv~li~~~~~~~~~~~~~ 160 (249)
.+|+.++++++.+.+..+.+ ..|+++.+.+.+++|||.+.+ + ++|+++.++|+.++...++++.
T Consensus 74 ~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~~----- 142 (290)
T TIGR00776 74 INQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKSA----- 142 (290)
T ss_pred hhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEecccccc-----
Confidence 99999999999999999988 889999999999999999999 8 9999999999887753322110
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHH
Q 025675 161 SSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCV 215 (249)
Q Consensus 161 ~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~ 215 (249)
++.+ ..+...|..+++.++++|+.|.+..|+. +++ |.+.++.+..
T Consensus 143 ------~~~~-~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~-~~~~~~~~~~ 187 (290)
T TIGR00776 143 ------GIKS-EFNFKKGILLLLMSTIGYLVYVVVAKAF--GVD-GLSVLLPQAI 187 (290)
T ss_pred ------cccc-ccchhhHHHHHHHHHHHHHHHHHHHHHc--CCC-cceehhHHHH
Confidence 0000 0223579999999999999999998865 354 6787544444
No 17
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.47 E-value=1.9e-14 Score=121.67 Aligned_cols=202 Identities=14% Similarity=0.182 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 025675 7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQT 86 (249)
Q Consensus 7 ~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 86 (249)
..+..++ ..+....+..+...+ .||.+...-|+++-.++ ..|...+......-|+..+ +++++.|+.|+....
T Consensus 40 l~l~~vs-~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mli-t~pcliy~~~~v~gp~g~R---~~LiLRg~mG~tgvm 112 (346)
T KOG4510|consen 40 LLLLTVS-YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLI-TYPCLIYYMQPVIGPEGKR---KWLILRGFMGFTGVM 112 (346)
T ss_pred ceehhhH-HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhh-hheEEEEEeeeeecCCCcE---EEEEeehhhhhhHHH
Confidence 3444444 444455555554454 59999999997776666 5555444322221133343 457888999977777
Q ss_pred HHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCC
Q 025675 87 CLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHN 166 (249)
Q Consensus 87 ~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~ 166 (249)
..|++++|.+.++|++++++.|+++++++|.++|||.+.. +..|..+.+.|+++++. +|.+ +++.. +.
T Consensus 113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIvR--PpFl--FG~~t--~g 180 (346)
T KOG4510|consen 113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIVR--PPFL--FGDTT--EG 180 (346)
T ss_pred HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEec--CCcc--cCCCc--cc
Confidence 8899999999999999999999999999999999999988 99999999999999873 2322 11111 11
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHh
Q 025675 167 ELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIA 228 (249)
Q Consensus 167 ~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 228 (249)
+|.+.-+....|...++.++++-|..+++.|+..|+.+. .....|..+.+.+...+.....
T Consensus 181 ~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~-~msvsyf~~i~lV~s~I~~~~i 241 (346)
T KOG4510|consen 181 EDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHA-IMSVSYFSLITLVVSLIGCASI 241 (346)
T ss_pred cccccccccCCchHHHHHhHhhhhhHHHHHHHhhccccE-EEEehHHHHHHHHHHHHHHhhc
Confidence 122222445678999999999999999999999998874 6667777888887777664444
No 18
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.43 E-value=3e-12 Score=110.06 Aligned_cols=130 Identities=20% Similarity=0.196 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH
Q 025675 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTS--DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS 81 (249)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~--p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (249)
.++....+++++.|+.+....|...++ .| +.....+|+.++.++ +++.....++. +..+.+++...+..|+++
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 201 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALL-LLPFAWFLGPN---PQALSLQWGALLYLGLIG 201 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHH-HHHHHHhcCCC---CCcchHHHHHHHHHHHHH
Confidence 467889999999999999999998865 66 455666889999988 88876654332 233566777788888888
Q ss_pred -HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhh
Q 025675 82 -CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGA 144 (249)
Q Consensus 82 -~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv 144 (249)
..++.+|+.++++++++.++.+.+++|+++.++++++++||++.+ +++|+.+.+.|+
T Consensus 202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~ 259 (260)
T TIGR00950 202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999 999999999886
No 19
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.39 E-value=4e-11 Score=103.05 Aligned_cols=193 Identities=11% Similarity=0.001 Sum_probs=150.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCC--CCCHHHHHHHHHHHHHH
Q 025675 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP--PLTVSIICKIFGLGLIS 81 (249)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~ 81 (249)
.++++..+.+.++||......|.. +. +|+.++...|..-+... ++.+....++.+... ..+.|.+..+...+++.
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll-~~-~~~~eIlahRviwS~~~-~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLL-EP-LPATEILAHRVIWSFPF-MLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 589999999999999999999975 44 89999999999999998 766665544322111 23444555666666666
Q ss_pred HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCC
Q 025675 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS 161 (249)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~ 161 (249)
..++..|.++.++-..-++|+=.+..|++.++++.+++|||+++. |++++.++.+||...+...|.
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g~-------- 148 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLGS-------- 148 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcCC--------
Confidence 899999999999999999999999999999999999999999999 999999999999887754331
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 025675 162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNP 232 (249)
Q Consensus 162 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~ 232 (249)
.. .. .+.=+++|++|..+ ||.. +.+ +.+-.+..++.-....+.+....+.+.
T Consensus 149 -----------lp-wv----al~la~sf~~Ygl~-RK~~-~v~-a~~g~~lE~l~l~p~al~yl~~l~~~~ 200 (293)
T COG2962 149 -----------LP-WV----ALALALSFGLYGLL-RKKL-KVD-ALTGLTLETLLLLPVALIYLLFLADSG 200 (293)
T ss_pred -----------Cc-HH----HHHHHHHHHHHHHH-HHhc-CCc-hHHhHHHHHHHHhHHHHHHHHHHhcCc
Confidence 11 22 45567899999998 4433 334 477777888887777777766665443
No 20
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.34 E-value=1e-10 Score=98.54 Aligned_cols=186 Identities=12% Similarity=0.056 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 025675 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ 85 (249)
Q Consensus 6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 85 (249)
+++.++.+++.-=....++|..... ++|.-.+.+|..+++++ ++++... ++ .|.+++++......|..-...+
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLI-ll~l~RP----wr-~r~~~~~~~~~~~yGvsLg~MN 85 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALI-LLALFRP----WR-RRLSKPQRLALLAYGVSLGGMN 85 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHH-HHHHhhH----HH-hccChhhhHHHHHHHHHHHHHH
Confidence 5777777777777778889998887 99999999999999998 7776533 22 4566667788888888777888
Q ss_pred HHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCC
Q 025675 86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLH 165 (249)
Q Consensus 86 ~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~ 165 (249)
.+||.+++.+|.+.+..+-++.|+.+.+++ .+|. + ..+-+.+.+.|+.++.-. +.
T Consensus 86 l~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr~--~------d~vwvaLAvlGi~lL~p~-~~------------ 140 (292)
T COG5006 86 LLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRRL--R------DFVWVALAVLGIWLLLPL-GQ------------ 140 (292)
T ss_pred HHHHHHHHhccchhhhhhhhccHHHHHHHh----ccch--h------hHHHHHHHHHHHHhheec-cC------------
Confidence 999999999999999999999999886643 2222 2 556677888998877521 21
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHh
Q 025675 166 NELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIA 228 (249)
Q Consensus 166 ~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 228 (249)
+...-+..|..+++.++.+|+.|.+..||..+..+. -+-+..-+..+++..+|+....
T Consensus 141 ----~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g-~~g~a~gm~vAaviv~Pig~~~ 198 (292)
T COG5006 141 ----SVWSLDPVGVALALGAGACWALYIVLGQRAGRAEHG-TAGVAVGMLVAALIVLPIGAAQ 198 (292)
T ss_pred ----CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCCC-chHHHHHHHHHHHHHhhhhhhh
Confidence 112335689999999999999999999999876664 6778899999999999998754
No 21
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.26 E-value=1.4e-10 Score=102.00 Aligned_cols=134 Identities=13% Similarity=0.074 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 025675 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC 83 (249)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 83 (249)
.+.++.+++++.|+.+.+..|...++ .+|...... ..++++. +.++...... . ...++..+...+.+|+++ .+
T Consensus 148 ~G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~~~-~~~~~~~-l~~~~~~~~~--~-~~~~~~~~~~~l~lgv~~t~~ 221 (293)
T PRK10532 148 TGAALALGAGACWAIYILSGQRAGAE-HGPATVAIG-SLIAALI-FVPIGALQAG--E-ALWHWSILPLGLAVAILSTAL 221 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHH-HHHHHHH-HHHHHHHccC--c-ccCCHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999998665 788777544 4566666 6676554322 1 234555555567889988 89
Q ss_pred HHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhc
Q 025675 84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLY 150 (249)
Q Consensus 84 ~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~ 150 (249)
++.+|+++++++++++++++.+++|+++.++++++++|+++.. +++|.++.+.|++.....
T Consensus 222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999 999999999999887643
No 22
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.26 E-value=8.3e-12 Score=94.64 Aligned_cols=103 Identities=22% Similarity=0.350 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhccCC-CCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHH
Q 025675 39 VYSNAFAAIFILLPSTFIYYRNRT-RPPLTVSIICKIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILAL 116 (249)
Q Consensus 39 ~~R~~~a~i~~ll~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~-~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~ 116 (249)
.+|+..+.+. +..+...++|.+. .+..+++.+.+....|+++ ..++.++++|+++++ +.++.+.++.|+++.++++
T Consensus 2 a~r~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~ 79 (113)
T PF13536_consen 2 AFRYLFSVLF-LLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSW 79 (113)
T ss_pred HHHHHHHHHH-HHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHH
Confidence 5899999998 7777766433211 0222334456667778888 699999999999999 5888999999999999999
Q ss_pred HHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675 117 ISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (249)
Q Consensus 117 ~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~ 149 (249)
+++|||++.+ +++|++++++|++++..
T Consensus 80 ~~~~er~~~~------~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 80 LFFKERLSPR------RWLAILLILIGVILIAW 106 (113)
T ss_pred HHhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence 9999999999 99999999999998874
No 23
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.24 E-value=1.2e-10 Score=102.35 Aligned_cols=135 Identities=13% Similarity=0.020 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 025675 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC 83 (249)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 83 (249)
.+.++.++++++|+.+....|...+ -++.....++..++++. +.+.....+.... ...+.+.+..+...|+++ ..
T Consensus 150 ~G~l~~l~a~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~i~~l~i~~s~~ 225 (292)
T PRK11272 150 WGAILILIASASWAFGSVWSSRLPL--PVGMMAGAAEMLAAGVV-LLIASLLSGERLT-ALPTLSGFLALGYLAVFGSII 225 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHH-HHHHHHHcCCccc-ccCCHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999998643 34566778898888888 7777654332111 123556778888889988 89
Q ss_pred HHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675 84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (249)
Q Consensus 84 ~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~ 149 (249)
++.+|+.++++.++++++++.+++|+++.++++++++|+++.. +++|.++.+.|+.+...
T Consensus 226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 99999999999987753
No 24
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.20 E-value=2e-10 Score=101.53 Aligned_cols=137 Identities=17% Similarity=0.183 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCC
Q 025675 74 IFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGP 153 (249)
Q Consensus 74 ~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~ 153 (249)
.+....+.+.+++.++.++.+|+++..+++.++.-+|+..++.++..||+++. |.+++.++++|+++++..+..
T Consensus 162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~ 235 (416)
T KOG2765|consen 162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSK 235 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecccc
Confidence 33344445899999999999999999999999999999999999999999999 999999999999988743221
Q ss_pred cccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhH---HHHHHHHHHHHHHHHHHHHh
Q 025675 154 ALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELM---ATFICCVFVTIQSTVVALIA 228 (249)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~---~~~~~~~~g~i~~~~~~~~~ 228 (249)
+. . ........+|+++++++|+.||+|+++.||-..+..+... ...+..++..+...|..++.
T Consensus 236 ~~--~----------~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL 301 (416)
T KOG2765|consen 236 QN--S----------DLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIIL 301 (416)
T ss_pred cc--c----------cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHH
Confidence 11 0 1123345799999999999999999999988766521222 33344444445555544443
No 25
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.19 E-value=6.2e-10 Score=100.64 Aligned_cols=136 Identities=13% Similarity=0.100 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHhHhccCC---CCCCCHHHHHHHHHHHHHH
Q 025675 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSD-FVLIVYSNAFAAIFILLPSTFIYYRNRT---RPPLTVSIICKIFGLGLIS 81 (249)
Q Consensus 6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p-~~~~~~R~~~a~i~~ll~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~ 81 (249)
+...++.+++.|+.+.+..|...++ .+| ...+++...++.+. +.+......+... ....+... ...+..|+..
T Consensus 190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-~~i~y~~i~t 266 (358)
T PLN00411 190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIV-TSMIGLVVEKNNPSVWIIHFDITL-ITIVTMAIIT 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHH-HHHHHHHHccCCcccceeccchHH-HHHHHHHHHH
Confidence 5577889999999999999988776 554 46677888777776 5555544332111 01223222 2344455544
Q ss_pred HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhc
Q 025675 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLY 150 (249)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~ 150 (249)
.+++.++++++++.+++.++++.+++|+++.++++++++|++++. +++|.++.+.|+.+....
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~ 329 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWG 329 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhh
Confidence 678889999999999999999999999999999999999999999 999999999999887643
No 26
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.18 E-value=5.2e-09 Score=92.54 Aligned_cols=174 Identities=14% Similarity=0.141 Sum_probs=135.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHH
Q 025675 33 SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTF 112 (249)
Q Consensus 33 ~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~ 112 (249)
.|..+++.++..+.+. ..+.....+++.. ++.++ ..+...++...++..+-+.+++|+|...-.++-.+.|+.++
T Consensus 31 ~~~~lt~~q~~~~~~~-~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vm 105 (303)
T PF08449_consen 31 FPLFLTFVQFAFNALF-SFILLSLFKFPKS-RKIPL---KKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVM 105 (303)
T ss_pred ccHHHHHHHHHHHHHH-HHHHHHhccccCC-CcChH---HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHH
Confidence 3889999999998887 6665443331111 33333 55667777778888999999999999999999999999999
Q ss_pred HHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 025675 113 ILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLL 192 (249)
Q Consensus 113 ~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~ 192 (249)
+++.+++|+|.+++ ++.++++..+|+.+....+..+.+. +.....++..|+++.+.+.++.+..
T Consensus 106 i~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~~----------~~~~~~~~~~G~~ll~~sl~~~a~~ 169 (303)
T PF08449_consen 106 ILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSSS----------SNSSSFSSALGIILLLLSLLLDAFT 169 (303)
T ss_pred HHHHHhcCccccHH------HHHHHHHHHhhHheeeecccccccc----------cccccccchhHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999998877543321110 0111122234999999999999999
Q ss_pred HHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHH
Q 025675 193 YIVQTSIIREYP-EELMATFICCVFVTIQSTVVALI 227 (249)
Q Consensus 193 ~v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~ 227 (249)
.++++|..++++ ++.+.+++...++.+...+....
T Consensus 170 ~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~ 205 (303)
T PF08449_consen 170 GVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFL 205 (303)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987654 36889999999999998888777
No 27
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.16 E-value=4.5e-10 Score=98.95 Aligned_cols=132 Identities=16% Similarity=0.102 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHH
Q 025675 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCV 84 (249)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 84 (249)
.+.+++++++++|+.+.+..|...++ .+|..... ..+.+. +.+..... .... ...+.+.+..+++.|+...++
T Consensus 156 ~G~~~~l~aa~~~A~~~v~~k~~~~~-~~~~~~~~---~~~~~~-l~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~t~~~ 228 (295)
T PRK11689 156 LSYGLAFIGAFIWAAYCNVTRKYARG-KNGITLFF---ILTALA-LWIKYFLS-PQPA-MVFSLPAIIKLLLAAAAMGFG 228 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC-CCchhHHH---HHHHHH-HHHHHHHh-cCcc-ccCCHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999997654 78776532 333334 33333322 2211 235666677777777544889
Q ss_pred HHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675 85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (249)
Q Consensus 85 ~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~ 149 (249)
+.+|+.+++++++++++.+.+++|++..++++++++|+++.. +++|.++.+.|+.+...
T Consensus 229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhh
Confidence 999999999999999999999999999999999999999999 99999999999987653
No 28
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.04 E-value=5.4e-09 Score=92.23 Aligned_cols=137 Identities=15% Similarity=0.120 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHHHHHhHhccC----CCCCCCHHHHHHHHHHH
Q 025675 5 GVTAVMVAVECLEVGSSTLNKAAMNKG--TSDFVLIVYSNAFAAIFILLPSTFIYYRNR----TRPPLTVSIICKIFGLG 78 (249)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~--~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~----~~~~~~~~~~~~~~~~g 78 (249)
.+.++.+++++.|+.+.+..|...+++ .+......+-...+.+. +.......++.. .....+.+.+..++.+|
T Consensus 143 ~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 143 LGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIP-FFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHH-HHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 577889999999999999999875442 22233445555555444 333332222211 00234667788889999
Q ss_pred HHH-HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675 79 LIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (249)
Q Consensus 79 ~~~-~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~ 148 (249)
+++ ...+.+|+.++++.++++++.+.+++|++..++++++++|+++.. +++|.++.+.|+.+..
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence 998 899999999999999999999999999999999999999999999 9999999999998765
No 29
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.02 E-value=1.8e-09 Score=94.44 Aligned_cols=132 Identities=15% Similarity=0.033 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH
Q 025675 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDF----VLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLI 80 (249)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~----~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (249)
++..+.+.++++|+.+.+..|...++ .+|. ....+.....++. +.+.....+++.. ...+++ +......+.+
T Consensus 144 ~g~~~~l~aal~~a~~~i~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~ 219 (281)
T TIGR03340 144 KAYAWALAAALGTAIYSLSDKAAALG-VPAFYSALGYLGIGFLAMGWP-FLLLYLKRHGRSM-FPYARQ-ILPSATLGGL 219 (281)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccc-hhcccccHHHHHHHHHHHHHH-HHHHHHHHhccch-hhhHHH-HHHHHHHHHH
Confidence 45667889999999999998875433 4443 2333333333222 2222221122111 112222 2344555555
Q ss_pred H-HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhh
Q 025675 81 S-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (249)
Q Consensus 81 ~-~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~l 146 (249)
. ...+.+|++++++.+++.++.+.+++|++..++++++++|+++.. +++|..+.+.|+.+
T Consensus 220 ~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l 280 (281)
T TIGR03340 220 MIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence 5 889999999999999999999999999999999999999999999 99999999999865
No 30
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.97 E-value=4.1e-09 Score=92.98 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCC-C-------CCHHH-HHH
Q 025675 4 VGVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP-P-------LTVSI-ICK 73 (249)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~-~-------~~~~~-~~~ 73 (249)
..+.++.+++++.|+...+..|...++ +.||..+..+....+++. ++|+....+.....+ . ..... +..
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~-l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFL-LSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV 222 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHH-HHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence 347788999999999999999997762 389999999999999998 888876543211000 0 01001 111
Q ss_pred HHHHHHHH-HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhc
Q 025675 74 IFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLY 150 (249)
Q Consensus 74 ~~~~g~~~-~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~ 150 (249)
.+..+... ...+.+++.++++++++.+++..+..|++++++|+++++|+++.+ +++|.++.+.|+.+....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~~ 294 (302)
T TIGR00817 223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSRV 294 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHHH
Confidence 22222222 333456778999999999999999999999999999999999999 999999999999877643
No 31
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.95 E-value=1.2e-10 Score=98.26 Aligned_cols=188 Identities=15% Similarity=0.146 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025675 15 CLEVGSSTLNKAAMNKGT-SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIG 93 (249)
Q Consensus 15 ~~wg~~~~~~k~~~~~~~-~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~ 93 (249)
++=+.++.-...+ ++|+ -|..=+|..+..-+++ -.++..++++ . .+..| ...++++++..-++.+-..+.|
T Consensus 29 ~~t~~a~tss~la-~k~iN~Pt~QtFl~Y~LLalV-Y~~~~~fR~~-~--~~~~~---~hYilla~~DVEaNy~vV~AyQ 100 (336)
T KOG2766|consen 29 LITSTAFTSSELA-RKGINAPTSQTFLNYVLLALV-YGPIMLFRRK-Y--IKAKW---RHYILLAFVDVEANYFVVKAYQ 100 (336)
T ss_pred HHHcchhhhHHHH-hccCCCccHHHHHHHHHHHHH-HhhHHHhhhH-H--HHHHH---HHhhheeEEeecccEEEeeehh
Confidence 3333344434433 3334 3667778888877777 7887776432 1 23444 3467778777667777789999
Q ss_pred ccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCC
Q 025675 94 YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQK 173 (249)
Q Consensus 94 ~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (249)
||+.+.+.++-.-.-..+.+++|+++|.|-++. |+.|+++|+.|++.+++.+- |+.+...+.
T Consensus 101 yTsmtSi~lLDcwaip~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~sDV------------~agd~aggs 162 (336)
T KOG2766|consen 101 YTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVFSDV------------HAGDRAGGS 162 (336)
T ss_pred hcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEEeee------------ccccccCCC
Confidence 999999999987666667889999999999999 99999999999998875432 122244566
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 025675 174 NWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER 230 (249)
Q Consensus 174 ~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~ 230 (249)
+..+||.+.+++|..||..++....+.++.+ ..+.+....++|++...+- +++++
T Consensus 163 np~~GD~lvi~GATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ-~i~~~ 217 (336)
T KOG2766|consen 163 NPVKGDFLVIAGATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQ-FIFER 217 (336)
T ss_pred CCccCcEEEEecceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHH-Hhhhc
Confidence 7789999999999999999999999999987 5899999999999999887 55554
No 32
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.82 E-value=1.7e-07 Score=80.47 Aligned_cols=152 Identities=14% Similarity=0.186 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhh
Q 025675 67 TVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (249)
Q Consensus 67 ~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~l 146 (249)
++|+...+.+-+++.+..+.+.+.++++.+++.-.++..+-.+++.+++++++|+|++.+ ||+++.+.+.|+.+
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l 86 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL 86 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence 456666777778888899999999999999999999999999999999999999999999 99999999999987
Q ss_pred hhhccCCcccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHH
Q 025675 147 VTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPE-ELMATFICCVFVTIQSTVVA 225 (249)
Q Consensus 147 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~g~i~~~~~~ 225 (249)
+...+.+..+.. +.++.+......+...|.++.+.++++-++..++.+|..|+.+. ...-+......|.+..++..
T Consensus 87 v~~~~~~~~~~~---~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~ 163 (244)
T PF04142_consen 87 VQLSSSQSSDNS---SSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLAL 163 (244)
T ss_pred eecCCccccccc---cccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 653221110000 00001111223456799999999999999999999999887643 34445555666666665554
Q ss_pred HH
Q 025675 226 LI 227 (249)
Q Consensus 226 ~~ 227 (249)
..
T Consensus 164 ~~ 165 (244)
T PF04142_consen 164 LL 165 (244)
T ss_pred hc
Confidence 33
No 33
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.80 E-value=7e-08 Score=85.02 Aligned_cols=131 Identities=12% Similarity=0.094 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHhHhccCC-CCCCCHHHHHHHHHHHHHHHHHH
Q 025675 8 AVMVAVECLEVGSSTLNKAAMNKG-TSDFVLIVYSNAFAAIFILLPSTFIYYRNRT-RPPLTVSIICKIFGLGLISCCVQ 85 (249)
Q Consensus 8 ~~~l~~~~~wg~~~~~~k~~~~~~-~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~ 85 (249)
...+.++++|+.+.+..|...++. .++.....+-..++.+. .++.. ..... ....++..+......|+....++
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~t~i~~ 227 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIY-LFAIA---DSSTSHMGQNPMSLNLLLIAAGIVTTVPL 227 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH-HHHHc---cCCcccccCCcHHHHHHHHHHHHHHHHHH
Confidence 356778999999999999864321 22334444444444443 32221 11110 01112222334444565457899
Q ss_pred HHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675 86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (249)
Q Consensus 86 ~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~ 148 (249)
.+++.++++.+++.++.+.+++|++..++++++++|+++.. +++|+++.++|+.++.
T Consensus 228 ~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 228 LCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 9999999999988776
No 34
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.80 E-value=1.3e-07 Score=74.86 Aligned_cols=134 Identities=19% Similarity=0.244 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCC------C----CCHH
Q 025675 6 VTAVMVAVECLEVGSSTLNKAAMNK------GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP------P----LTVS 69 (249)
Q Consensus 6 ~~~~~l~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~------~----~~~~ 69 (249)
+.+..+.+.++-+...+..|...++ +.+|.++..+-...+.+. ++|.....++....+ + .+.+
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~-l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 79 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFII-LLPLAFLLEGPQLSSFFSEIFGEELSSDPN 79 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhHHHHhhhhhhcchHH
Confidence 3567888999999999999998866 689999999999999999 999887765432101 0 0223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhh
Q 025675 70 IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (249)
Q Consensus 70 ~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~l 146 (249)
.+..++..|+.+...+...+.-++++++...++..+.-.+.++++++++++|+++.+ ++.|+++++.|..+
T Consensus 80 ~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 80 FIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence 345556666667888999999999999999999999999999999999999999999 99999999999864
No 35
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.79 E-value=8.9e-08 Score=84.68 Aligned_cols=181 Identities=14% Similarity=0.139 Sum_probs=141.7
Q ss_pred HHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCchh
Q 025675 22 TLNKAAMN--KGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTL 99 (249)
Q Consensus 22 ~~~k~~~~--~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~ 99 (249)
+..|..++ ..--|..++..++..+.+. .+.......++.+ +..+...+..++-+|+..++...+-+.++.+.+.+-
T Consensus 34 ~~nK~il~~~~f~~p~~lt~~~~~~~~l~-~~v~~~l~~~~~~-~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF 111 (316)
T KOG1441|consen 34 ILNKYILSKYGFPFPITLTMLHLFCGALA-LLVIKVLKLVPPS-KISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSF 111 (316)
T ss_pred EeeHhhhccCCCCCccHHHHHHHHHHHHH-HHHHHHhcCCCCC-ccccccchHHHHHHHHHHHHHHHhcchhhhccchhH
Confidence 35677777 4345889999988777776 5554443322222 212334456778888888888888999999999999
Q ss_pred hhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCchHHHH
Q 025675 100 SSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGG 179 (249)
Q Consensus 100 a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 179 (249)
.-.+=.++|+++.++++++.+|+.+++ ....++....|+.+... + +.+-...|.
T Consensus 112 ~q~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~--~------------------e~~fn~~G~ 165 (316)
T KOG1441|consen 112 YQTIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASV--T------------------ELSFNLFGF 165 (316)
T ss_pred HHHHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeee--c------------------cccccHHHH
Confidence 999999999999999999999999999 88888888899876542 1 122346899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----CCchhHHHHHHHHHHHHHHH-HHHHHhhcC
Q 025675 180 LVLAAGSFFLSLLYIVQTSIIRE----YPEELMATFICCVFVTIQST-VVALIAERN 231 (249)
Q Consensus 180 ~~~l~aa~~~a~~~v~~k~~~~~----~~~~~~~~~~~~~~g~i~~~-~~~~~~~~~ 231 (249)
+.++++.+..+..++++|+..++ .+ +.+...++.-++.+.++ |+....|++
T Consensus 166 i~a~~s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~ 221 (316)
T KOG1441|consen 166 ISAMISNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGN 221 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhccc
Confidence 99999999999999999999852 44 68999999999999999 887776653
No 36
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.75 E-value=1.2e-07 Score=83.48 Aligned_cols=130 Identities=12% Similarity=0.011 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH---HHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH
Q 025675 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNA---FAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLI 80 (249)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~---~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (249)
+|+....+++.+.++.+....|.. + .||...++.... +++.+ ..+.. + +. + +.. .+.....+..|++
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~-~~~~~--~-~~-~-~~~-~~~~~~~~~~Gi~ 220 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF--G-VDGLSVLLPQAIGMVIGGII-FNLGH--I-LA-K-PLK-KYAILLNILPGLM 220 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc--C-CCcceehhHHHHHHHHHHHH-HHHHH--h-cc-c-chH-HHHHHHHHHHHHH
Confidence 689999999999999999999965 3 789888555444 44444 33322 1 11 2 222 2333334457777
Q ss_pred HHHHHHHHHHhhc-ccCchhhhhcccchHHHHHHHHHHHhhcccceeecccccee----ehHHHhhhhhhhhhh
Q 025675 81 SCCVQTCLYVGIG-YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKS----IGTMVSIAGALTVTL 149 (249)
Q Consensus 81 ~~~~~~~~~~gl~-~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~----~g~~l~~~Gv~li~~ 149 (249)
...++.+|+.|.+ +.+++.++++.+.+|+...+.+++++||+.+.+ ++ +|+++.+.|+.++..
T Consensus 221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~------~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR------EMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc------eeehhHHHHHHHHHHHHHHhc
Confidence 7888889999999 999999999999999999999999999999999 99 999999999987653
No 37
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.75 E-value=2.2e-07 Score=83.91 Aligned_cols=138 Identities=14% Similarity=0.063 Sum_probs=100.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHhHhccC-CC------CCCCHHH
Q 025675 4 VGVTAVMVAVECLEVGSSTLNKAAMNK------GTSDFVLIVYSNAFAAIFILLPSTFIYYRNR-TR------PPLTVSI 70 (249)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~-~~------~~~~~~~ 70 (249)
..+.+..+++++.|+...+..|...++ ..++..+..+....++++ ++|+....+... .. ...+...
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lp~~~~~e~~~~~~~~~~~~~~~~~~~ 271 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLI-SLPLVLFFEGKKWVPVWTNYTANMTNYT 271 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence 357888999999999999999998764 256777777778889988 888876432110 00 0001100
Q ss_pred HHHHHHHHHHHHHHHHHHH----HhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhh
Q 025675 71 ICKIFGLGLISCCVQTCLY----VGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (249)
Q Consensus 71 ~~~~~~~g~~~~~~~~~~~----~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~l 146 (249)
+...+...+.....+.+++ .+++++++.++++..++.|++++++|+++++|+++.. +++|.++.+.|+.+
T Consensus 272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~l 345 (350)
T PTZ00343 272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALL 345 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHH
Confidence 1111222222234444444 6999999999999999999999999999999999999 99999999999976
Q ss_pred hh
Q 025675 147 VT 148 (249)
Q Consensus 147 i~ 148 (249)
-.
T Consensus 346 Ys 347 (350)
T PTZ00343 346 YS 347 (350)
T ss_pred Hh
Confidence 54
No 38
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.68 E-value=4.7e-07 Score=78.16 Aligned_cols=131 Identities=18% Similarity=0.169 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-H
Q 025675 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIV-YSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-C 82 (249)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~-~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~ 82 (249)
.+.++.+.+++.|+.+.+..|... + .++..... +....+... ..+. ...... ...+.+.+......|+++ .
T Consensus 154 ~g~~~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~--~~~~~~~~~~~~~~g~~~~~ 226 (292)
T COG0697 154 LGLLLALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLL-LLLF--FLSGFG--APILSRAWLLLLYLGVFSTG 226 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHH-HHHH--Hhcccc--ccCCHHHHHHHHHHHHHHHH
Confidence 577889999999999999999876 4 67777777 444422222 2222 122111 234566778888889988 6
Q ss_pred HHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675 83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (249)
Q Consensus 83 ~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~ 148 (249)
..+.+++.++++.+++.++.+.+++|++..++++++++|+++.+ +++|.++.+.|+.+..
T Consensus 227 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~ 286 (292)
T COG0697 227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999 9999999999988765
No 39
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.62 E-value=2e-06 Score=73.92 Aligned_cols=192 Identities=13% Similarity=0.120 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHh---cCC----ChHHHHHHHHHHHHHHHHHHHHHhHhccCCCC----------C--CCHHHHHHHHHHH
Q 025675 18 VGSSTLNKAAMN---KGT----SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP----------P--LTVSIICKIFGLG 78 (249)
Q Consensus 18 g~~~~~~k~~~~---~~~----~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~----------~--~~~~~~~~~~~~g 78 (249)
+.+.+.+|.+-+ +|. +|+.-+..-++.-..+ +..+.+++.|...+- + .+.+. ..++.-.
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflC-l~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p-~lfl~Pa 93 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLC-LAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP-VLFLPPA 93 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCcccccccccccccCCCCc-ceecChH
Confidence 456678887653 233 3777666666666666 666666655433210 0 11221 1222334
Q ss_pred HHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCccccc
Q 025675 79 LISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSM 158 (249)
Q Consensus 79 ~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~ 158 (249)
+.......+++.|+.+|+++.--.+-...-+|+.+++..+++++++.+ +|.|+.....|++++...+ -...+.
T Consensus 94 l~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d-~~~~~~ 166 (372)
T KOG3912|consen 94 LCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLD-VHLVTD 166 (372)
T ss_pred HHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeee-cccccC
Confidence 444777788999999999999999999999999999999999999999 9999999999998776432 111000
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHH
Q 025675 159 SSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP-EELMATFICCVFVTIQSTVVALI 227 (249)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~ 227 (249)
| -.+..+.+.|+++.++|=+.-|...++-+|..++.. +|.....|+.++|.+.+...+..
T Consensus 167 --------p-~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~ 227 (372)
T KOG3912|consen 167 --------P-YTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIP 227 (372)
T ss_pred --------C-ccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHH
Confidence 0 112345678999999999999999999999988643 48999999999996655555443
No 40
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.55 E-value=4.8e-07 Score=68.35 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=61.2
Q ss_pred HHHHHH-HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675 76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (249)
Q Consensus 76 ~~g~~~-~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~ 148 (249)
..++.+ ...+.++..++++.|.+.|-.+.++.|+++.++|++++|||++++ |++|+.+.++|++++.
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 344455 788899999999999999999999999999999999999999999 9999999999998765
No 41
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.43 E-value=3.2e-06 Score=75.61 Aligned_cols=138 Identities=14% Similarity=0.068 Sum_probs=107.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCC-CCCCCHHHHHHHHHHHHHHH
Q 025675 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT-RPPLTVSIICKIFGLGLISC 82 (249)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~ 82 (249)
.++-+.++.+++++|.+.+.-|...++ .|+.++...=.+++.++ ..+.....+++.. ...++++....+..-++..+
T Consensus 167 i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii-~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf 244 (334)
T PF06027_consen 167 ILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFII-SGIQLAILERSGIESIHWTSQVIGLLVGYALCLF 244 (334)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHH-HHHHHHheehhhhhccCCChhhHHHHHHHHHHHH
Confidence 467889999999999999999998886 89999998888888888 8777766555332 12334443333222222226
Q ss_pred HHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675 83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (249)
Q Consensus 83 ~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~ 149 (249)
..+.+.-..+++++|+...+-.-+..+++.+.+++++|+++++. .++|.++.++|.++...
T Consensus 245 ~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~ 305 (334)
T PF06027_consen 245 LFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNL 305 (334)
T ss_pred HHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEc
Confidence 66667788899999987777777889999999999999999998 99999999999987654
No 42
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.34 E-value=0.00024 Score=63.13 Aligned_cols=203 Identities=12% Similarity=0.078 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHhHhcc--CC-CCC------CCHHHHHHH
Q 025675 7 TAVMVAVECLEVGSSTLNKAAMNKG---TSDFVLIVYSNAFAAIFILLPSTFIYYRN--RT-RPP------LTVSIICKI 74 (249)
Q Consensus 7 ~~~~l~~~~~wg~~~~~~k~~~~~~---~~p~~~~~~R~~~a~i~~ll~~~~~~~~~--~~-~~~------~~~~~~~~~ 74 (249)
++.++...+.++......|+....+ ..|...++.--.+-.++ ++...+...|+ .+ .+. ..+++....
T Consensus 17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~-c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~ 95 (345)
T KOG2234|consen 17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVF-CLFLLLFEERKYAKKSLKSLSKEILAAPRETLKV 95 (345)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHH
Confidence 4566777888999999999987665 66778888877777777 66665554322 11 011 123333445
Q ss_pred HHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCc
Q 025675 75 FGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPA 154 (249)
Q Consensus 75 ~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~ 154 (249)
.+-+++.++.+-++++++.+.+++.-.+...+--..+.+++.+++++|++++ ||.+.++.++|+.++.....+
T Consensus 96 ~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~- 168 (345)
T KOG2234|consen 96 SVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLS- 168 (345)
T ss_pred HHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCC-
Confidence 5556666777779999999999999999999999999999999999999999 999999999999877521111
Q ss_pred ccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHHHHHHH
Q 025675 155 LVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEE-LMATFICCVFVTIQSTVVA 225 (249)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~g~i~~~~~~ 225 (249)
.. +..+ ....++...|...++.+.+.-++..++.+|..|+-..+ ..-+.-...+|.+..+...
T Consensus 169 ~~-------~a~~-~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~ 232 (345)
T KOG2234|consen 169 PT-------GAKS-ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTI 232 (345)
T ss_pred CC-------CccC-CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 12345678899999999888888899999998764322 3333344444544444443
No 43
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.32 E-value=5.7e-06 Score=70.17 Aligned_cols=132 Identities=15% Similarity=0.093 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 025675 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC 83 (249)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 83 (249)
.+..+.+.+..+|..+-+..|.+-+. .+--.=+..-++.++++ .+|+-.-.... --.+++....-+.+|+++ .+
T Consensus 148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAavi-v~Pig~~~ag~---~l~~p~ll~laLgvavlSSal 222 (292)
T COG5006 148 VGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALI-VLPIGAAQAGP---ALFSPSLLPLALGVAVLSSAL 222 (292)
T ss_pred HHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHH-Hhhhhhhhcch---hhcChHHHHHHHHHHHHhccc
Confidence 45678899999999999999988754 56667778888999999 99987643221 123455556667788888 99
Q ss_pred HHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhh
Q 025675 84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (249)
Q Consensus 84 ~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li 147 (249)
.|.+...++.+.|...-+++.+++|.+..+.++++++|+++.. ||.|+...+++..=.
T Consensus 223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsaG~ 280 (292)
T COG5006 223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASAGS 280 (292)
T ss_pred chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999 999999877776533
No 44
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.31 E-value=8.2e-06 Score=63.26 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 025675 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC 83 (249)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 83 (249)
+++++++...++-+...++.|...++ .++.+.... . . . .+. . . . . + ...+..|+.. .+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~---~-~~~-~--~-~--~----p----~~~i~lgl~~~~l 60 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-I---A-ALL-A--F-G--L----A----LRAVLLGLAGYAL 60 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-H---H-HHH-H--H-h--c----c----HHHHHHHHHHHHH
Confidence 46778888888888899999988876 544332221 1 1 1 011 0 0 0 0 1 2246678877 89
Q ss_pred HHHHHHHhhcccCchhhhhcccchHHHHHHHHHH--HhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675 84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALI--SRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (249)
Q Consensus 84 ~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~--~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~ 148 (249)
++.++..++++.+++.|..+.+..++++.+.++. +++|+++++ |++|+++.++|+.++.
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999888888885 799999999 9999999999998876
No 45
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.31 E-value=2.1e-06 Score=70.35 Aligned_cols=99 Identities=20% Similarity=0.248 Sum_probs=87.9
Q ss_pred HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCC
Q 025675 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS 161 (249)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~ 161 (249)
.+.++.|..+++.++++.++.+......|+.+++++.+++|+.-. |+++..+++.|++++...++.
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~DN~-------- 129 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYADNE-------- 129 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEeccch--------
Confidence 677889999999999999999999999999999999999999988 999999999999887754432
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 025675 162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP 204 (249)
Q Consensus 162 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~ 204 (249)
-.+.+.|+.++..+++--|+|.++-|+...+.+
T Consensus 130 ----------~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn 162 (290)
T KOG4314|consen 130 ----------HADEIIGIACAVGSAFMAALYKVLFKMFIGNAN 162 (290)
T ss_pred ----------hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 245689999999999999999999998876543
No 46
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.20 E-value=3.2e-05 Score=67.36 Aligned_cols=171 Identities=17% Similarity=0.185 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhccCC--CCCCCHHHHH-HHHHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHH
Q 025675 34 DFVLIVYSNAFAAIFILLPSTFIYYRNRT--RPPLTVSIIC-KIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAF 110 (249)
Q Consensus 34 p~~~~~~R~~~a~i~~ll~~~~~~~~~~~--~~~~~~~~~~-~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~ 110 (249)
|+.++....+.=... ........+++.. ..+.+|++.. +..-.|+.+++--.+-+++++|++.+--+..=++.++|
T Consensus 45 PLf~ts~h~~v~flf-a~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~F 123 (349)
T KOG1443|consen 45 PLFVTSLHLAVKFLF-AALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILF 123 (349)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHH
Confidence 777776655444333 2222222222111 0245665533 34455666667777889999999999999999999999
Q ss_pred HHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 025675 111 TFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLS 190 (249)
Q Consensus 111 ~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a 190 (249)
+.++|.++.-||.+|. -..-+.+..+|+++.+ .|+. +-...|-.+++.+++.-+
T Consensus 124 IllFs~if~lEk~~w~------L~l~v~lI~~Glflft-~KsT-------------------qf~i~Gf~lv~~aS~~sG 177 (349)
T KOG1443|consen 124 ILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFT-YKST-------------------QFNIEGFFLVLAASLLSG 177 (349)
T ss_pred HHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEE-eccc-------------------ceeehhHHHHHHHHHhhh
Confidence 9999999999999988 5566666667776665 3332 223567777877777766
Q ss_pred HHHHHHHHHHhhCC----chhHHHHHHHHHHHHHHHHHHHHhhcC
Q 025675 191 LLYIVQTSIIREYP----EELMATFICCVFVTIQSTVVALIAERN 231 (249)
Q Consensus 191 ~~~v~~k~~~~~~~----~~~~~~~~~~~~g~i~~~~~~~~~~~~ 231 (249)
+--.+.++..++.| .|+...+..+-.-.+..+|..+.+|+.
T Consensus 178 lRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~ 222 (349)
T KOG1443|consen 178 LRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGL 222 (349)
T ss_pred hhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHccc
Confidence 65555555555543 467777777777778888888888764
No 47
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.01 E-value=0.00048 Score=59.71 Aligned_cols=135 Identities=11% Similarity=-0.016 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhccc-chHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhh
Q 025675 68 VSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (249)
Q Consensus 68 ~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~-~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~l 146 (249)
.+.+..-++.|++....|...+.+.++.+.+++.-+.. .+=+.+.+.+.++++|--+.+.+. .-..++++.++|+.+
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~--~G~~Al~liiiGv~l 119 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKI--IGFLALVLIIIGVIL 119 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHH--HHHHHHHHHHHHHHH
Confidence 36777777888888999999999999999999999976 666668888999999987766210 123467778888876
Q ss_pred hhhccCCcccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Q 025675 147 VTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQ 220 (249)
Q Consensus 147 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~ 220 (249)
....++.+. +.++..+...|....++++++|..|.++.|- .+.+ +.+..+=| .+|.+.
T Consensus 120 ts~~~~~~~------------~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~~-~~~~~lPq-aiGm~i 177 (269)
T PF06800_consen 120 TSYQDKKSD------------KSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHVS-GWSAFLPQ-AIGMLI 177 (269)
T ss_pred hcccccccc------------ccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCCC-hhHhHHHH-HHHHHH
Confidence 553322211 1112345567999999999999999999664 3443 56655544 444433
No 48
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0013 Score=57.70 Aligned_cols=192 Identities=10% Similarity=0.044 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHH--HHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 025675 10 MVAVECLEVGSSTLNKAAMNKGTSDFVLIV--YSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTC 87 (249)
Q Consensus 10 ~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~--~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 87 (249)
.+.-++.-..+.+.-|.++...=-|..+.. ++.+.+.+. +...-.. |-.+.+..+++..+..+-..++-.+....
T Consensus 17 a~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~-v~~lk~~--~lv~~~~l~~~~~kk~~P~~~lf~~~i~t 93 (314)
T KOG1444|consen 17 ALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLV-VLVLKRL--GLVNFRPLDLRTAKKWFPVSLLFVGMLFT 93 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHh--ceeecCCcChHHHHHHccHHHHHHHHHHH
Confidence 333333333444566777765323444444 888888776 5543322 22223566777666666666665555555
Q ss_pred HHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCC
Q 025675 88 LYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNE 167 (249)
Q Consensus 88 ~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~ 167 (249)
-..+++|.+...-+++-+..|+++.+....+++.|++++ .+..+....+|...-... +
T Consensus 94 ~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~-d--------------- 151 (314)
T KOG1444|consen 94 GSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFT-D--------------- 151 (314)
T ss_pred ccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhccc-c---------------
Confidence 678999999999999999999999999999999998888 888888888887654421 1
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHHhhc
Q 025675 168 LRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP-EELMATFICCVFVTIQSTVVALIAER 230 (249)
Q Consensus 168 ~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~~~~ 230 (249)
......|..+.+..-+.-+.+.+..||..+..+ ....+++|..+..........+++++
T Consensus 152 ----~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge 211 (314)
T KOG1444|consen 152 ----LSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGE 211 (314)
T ss_pred ----ceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcc
Confidence 111234899999999999999999998876532 13678889999988888888777654
No 49
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.74 E-value=0.0013 Score=59.05 Aligned_cols=176 Identities=11% Similarity=0.044 Sum_probs=112.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH-HHHHHHHHHHHHHHH--hHhccC--CCCCCCHHHHHHHHHHH
Q 025675 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVY-SNAFAAIFILLPSTF--IYYRNR--TRPPLTVSIICKIFGLG 78 (249)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~-R~~~a~i~~ll~~~~--~~~~~~--~~~~~~~~~~~~~~~~g 78 (249)
..+++..++++++||+.+...|. .++ -+.+.... -..++.+ +.|+.. ...+.. ...+.+.+.+..-++-|
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~--w~wE~~W~v~gi~~wl--~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G 80 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VKK--WSWETMWSVGGIFSWL--ILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFG 80 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cCC--CchhHHHHHHHHHHHH--HHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHH
Confidence 46889999999999999999998 332 33332211 1111111 122110 000100 01234566666666777
Q ss_pred HHHHHHHHHHHHhhcccCchhhhhcc-cchHHHHHHHHHHHhhccc---ceeeccccceeehHHHhhhhhhhhhhccCCc
Q 025675 79 LISCCVQTCLYVGIGYSSPTLSSAIV-DLTPAFTFILALISRMEKL---DLRVQSSLAKSIGTMVSIAGALTVTLYKGPA 154 (249)
Q Consensus 79 ~~~~~~~~~~~~gl~~~~a~~a~ii~-~~~Pv~~~~ls~~~~~Ek~---~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~ 154 (249)
++-...+..++.++++.+.+.+.-+. .++-+...+++.++++|=- +-+ ....-.+|+++.++|+.+......-+
T Consensus 81 ~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~liliGi~l~s~Ag~~k 158 (345)
T PRK13499 81 ALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVALIGVAIVGRAGQLK 158 (345)
T ss_pred HHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccc--hHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 77789999999999999999998885 4888899999999988633 222 12236789999999998776421100
Q ss_pred ccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 025675 155 LVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLY 193 (249)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~ 193 (249)
| +++.+|....++...|..+++++++.+++|+
T Consensus 159 -----~--~~~~~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 159 -----E--RKMGIKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred -----c--cccccccccccchHhHHHHHHHHHHHHHHHH
Confidence 0 0001111223456789999999999999999
No 50
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.73 E-value=0.00042 Score=61.27 Aligned_cols=137 Identities=19% Similarity=0.217 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHh--HhccCC---CCCCCHHHHHHHHHHHH
Q 025675 6 VTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFI--YYRNRT---RPPLTVSIICKIFGLGL 79 (249)
Q Consensus 6 ~~~~~l~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~i~~ll~~~~~--~~~~~~---~~~~~~~~~~~~~~~g~ 79 (249)
++.+++++.++-|...+.-+...++ +.+|.+..++-..++.+. .++.... .+.-.. ....+...+..++...+
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~-~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~ 233 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPF-LLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL 233 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-HHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence 7888999999999999999988854 689999999999999988 7776665 221110 00112223445566666
Q ss_pred HHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675 80 ISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (249)
Q Consensus 80 ~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~ 149 (249)
.+...+.+.+.-.++.++...+++..+--+++++++.+++++++++. +|+|+++.+.|..+=..
T Consensus 234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHHH
Confidence 66777777778889999999999999999999999999999999999 99999999999876543
No 51
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.72 E-value=0.00027 Score=61.22 Aligned_cols=131 Identities=11% Similarity=-0.043 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHH
Q 025675 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCC 83 (249)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 83 (249)
.|++..++++.+.+..+..+.|.. ++||....+=+...=.+. .+.+....+++.+ .|.+++ -++.|++...
T Consensus 137 ~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~-a~i~~~~~~~~~~-~k~~~~----nil~G~~w~i 207 (269)
T PF06800_consen 137 KKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIG-AFIFNLFSKKPFF-EKKSWK----NILTGLIWGI 207 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHH-HHHHhhccccccc-ccchHH----hhHHHHHHHH
Confidence 468899999999999999998863 378877776443322222 2222222222222 333443 3455777788
Q ss_pred HHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhh
Q 025675 84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGAL 145 (249)
Q Consensus 84 ~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~ 145 (249)
++.+++.+.+..+.+.+-.+..+.++...+.+.+++||+=++|++. ..++|+++.++|.+
T Consensus 208 gnl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~--~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 208 GNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMI--YTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHH--HHHHHHHHHHHhhh
Confidence 8899999999999999999999999999999999999998877321 13445555555543
No 52
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.70 E-value=0.00074 Score=58.00 Aligned_cols=106 Identities=8% Similarity=-0.048 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025675 9 VMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCL 88 (249)
Q Consensus 9 ~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 88 (249)
..+.+++.|+.+.+..|...++ ++........ ..... ..+................++|...+..|+.+..++.++
T Consensus 150 ~~l~aa~~~a~~~i~~~~~~~~--~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~ 225 (256)
T TIGR00688 150 EALVLAFSFTAYGLIRKALKNT--DLAGFCLETL-SLMPV-AIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPLLAF 225 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHH-HHHHH-HHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999986543 3333322221 11111 111111111111001112246777888887778899999
Q ss_pred HHhhcccCchhhhhcccchHHHHHHHHHHH
Q 025675 89 YVGIGYSSPTLSSAIVDLTPAFTFILALIS 118 (249)
Q Consensus 89 ~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~ 118 (249)
+.|+++.+++.++.+.+++|+++.+++.++
T Consensus 226 ~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 226 VIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999764
No 53
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.41 E-value=0.0035 Score=54.47 Aligned_cols=129 Identities=10% Similarity=-0.004 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025675 10 MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT-RPPLTVSIICKIFGLGLISCCVQTCL 88 (249)
Q Consensus 10 ~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~ 88 (249)
.+..++.||.+...=|.. ++|+.+=...-.+.-.+. .+........+.+ ..+.+.+.+..+...|.+.+.+-.+|
T Consensus 153 al~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~-al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf 228 (293)
T COG2962 153 ALALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPV-ALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLF 228 (293)
T ss_pred HHHHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHH-HHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHH
Confidence 345577888888777753 367776666666555555 4444444332221 01234455677888899989999999
Q ss_pred HHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675 89 YVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (249)
Q Consensus 89 ~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~ 148 (249)
..|-++++-+.-++++|.+|....+++.++++|+++.. +.++-+..-.|+++..
T Consensus 229 ~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~ 282 (293)
T COG2962 229 AAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFS 282 (293)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999888987765
No 54
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.22 E-value=0.00092 Score=59.40 Aligned_cols=138 Identities=14% Similarity=0.171 Sum_probs=108.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHh---cCCChHHHHHHHHHHHHHHHHH-HHHHhHhccC----CCCCCCHHHHHHH
Q 025675 3 SVGVTAVMVAVECLEVGSSTLNKAAMN---KGTSDFVLIVYSNAFAAIFILL-PSTFIYYRNR----TRPPLTVSIICKI 74 (249)
Q Consensus 3 ~~~~~~~~l~~~~~wg~~~~~~k~~~~---~~~~p~~~~~~R~~~a~i~~ll-~~~~~~~~~~----~~~~~~~~~~~~~ 74 (249)
|+.+.+..+.+.+..+.-.++.|..+. +..|+..+..+..-++.+. ++ |+....+... .....+... ...
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~-Ll~P~~~~~~~~~~~~~~~~~~~~~~-~~~ 238 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIF-LLIPFLDYVEGNKFVGFLTAPWFVTF-LIL 238 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHH-HhcchHhhhcccceeeeeccccchhh-HHH
Confidence 457888999999999999999999983 3589999999999999999 88 8776644322 111333333 333
Q ss_pred HHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675 75 FGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (249)
Q Consensus 75 ~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~ 148 (249)
....+.....+..-|.-+++++|-+=++....==+++++.|+++++|++++. +..|+.+++.|+.+=.
T Consensus 239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence 4444555777788899999999999999988777778888999999999999 9999999999997644
No 55
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.20 E-value=0.0033 Score=47.24 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhcccCchhhhhc-ccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhh
Q 025675 82 CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (249)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~a~ii-~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li 147 (249)
..++.+...++++.|.+.|=.+ ....-+.+.+.++++++|++++. |++|+.+.+.|++.+
T Consensus 46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l 106 (109)
T PRK10650 46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence 6788889999999999988665 45888889999999999999999 999999999999865
No 56
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.12 E-value=0.00098 Score=50.27 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH-HHHHHHHHH
Q 025675 11 VAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLI-SCCVQTCLY 89 (249)
Q Consensus 11 l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~ 89 (249)
+++.++||++.++.|.+.+. .++..-.. |. ..-.. . . . .+++ +. .++. +-.....|+
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~-~~~~~-~----L-l--------~n~~---y~--ipf~lNq~GSv~f~ 59 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QL-LQEIK-F----L-L--------LNPK---YI--IPFLLNQSGSVLFF 59 (113)
T ss_pred eeehHHhcCchHHHHHHHhh-cCCccchH-HH-HHHHH-H----H-H--------HhHH---HH--HHHHHHHHHHHHHH
Confidence 45789999999999998865 44443332 32 22211 1 0 0 1222 11 1333 366677889
Q ss_pred HhhcccCchhhhhccc-chHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhh
Q 025675 90 VGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (249)
Q Consensus 90 ~gl~~~~a~~a~ii~~-~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li 147 (249)
+.+...+.+.+..+.| +.=+++.+.++++.+|..+++ +++|+.+.+.|+.++
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC 112 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence 9999999999999975 666777777877777776777 899999999998764
No 57
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.11 E-value=0.0047 Score=46.48 Aligned_cols=65 Identities=25% Similarity=0.302 Sum_probs=56.1
Q ss_pred HHHH-HHHHHHHHHhhcccCchhhhhc-ccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675 78 GLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (249)
Q Consensus 78 g~~~-~~~~~~~~~gl~~~~a~~a~ii-~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~ 148 (249)
.+.+ .+.+.++..++++.|.+.|=.+ ....-+.+.+.++++++|++++. +++|+.+.++|++.+.
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 3444 7788888999999999988766 45788888999999999999999 9999999999998875
No 58
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.08 E-value=0.0035 Score=53.07 Aligned_cols=170 Identities=12% Similarity=0.078 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHHH
Q 025675 34 DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFI 113 (249)
Q Consensus 34 p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ 113 (249)
...+++.+.....+. .=.+..++.+ .+ .+...-......++-..+++..-+.++++.|=-...+=-+.-|+=+++
T Consensus 53 alaLVf~qC~~N~vf-Akvl~~ir~~-~~---~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMi 127 (337)
T KOG1580|consen 53 ALALVFFQCTANTVF-AKVLFLIRKK-TE---IDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMI 127 (337)
T ss_pred HHHHHHHHHHHHHHH-HHhheeeccc-cc---ccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceee
Confidence 445667777666665 4333322222 11 221111233344444466677778999999988888888899999999
Q ss_pred HHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 025675 114 LALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLY 193 (249)
Q Consensus 114 ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~ 193 (249)
+++++.|.+-.|+ |...++..++|+.+....++... ....++...|+++.+.+---=.+..
T Consensus 128 lGVl~~~KsY~w~------kY~cVL~IV~GValFmYK~~Kv~-------------g~e~~t~g~GElLL~lSL~mDGlTg 188 (337)
T KOG1580|consen 128 LGVLFAHKSYHWR------KYCCVLMIVVGVALFMYKENKVG-------------GAEDKTFGFGELLLILSLAMDGLTG 188 (337)
T ss_pred eehhhhcccccHH------HHHHHHHHHHHHHHhhccccccC-------------CCcccccchHHHHHHHHHHhcccch
Confidence 9999999999998 99999999999987763322211 1123456689999999887777788
Q ss_pred HHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHH
Q 025675 194 IVQTSIIREYP-EELMATFICCVFVTIQSTVVALI 227 (249)
Q Consensus 194 v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~ 227 (249)
..|+++.+++. ...+++++..+-+++.+..-.++
T Consensus 189 ~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lf 223 (337)
T KOG1580|consen 189 SIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLF 223 (337)
T ss_pred hHHHHHHHhhccCchhhHHHHHHHHHHHhhhhhee
Confidence 88888877653 23566777777666665544333
No 59
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.08 E-value=9.7e-05 Score=62.59 Aligned_cols=171 Identities=13% Similarity=0.050 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 025675 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ 85 (249)
Q Consensus 6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 85 (249)
.++..++=++.||......... |=+|.+=+..-.+.|.++ .+.+.++ .+ |..+.+.+..-++-|++....|
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALif-aiiv~~~-~~----p~~T~~~~iv~~isG~~Ws~GQ 73 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIF-AIIVFLF-VS----PELTLTIFIVGFISGAFWSFGQ 73 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHH-HHHHhee-ec----CccchhhHHHHHHhhhHhhhhh
Confidence 4667788899999888765432 346666555555455444 3433333 22 5567776676667777778899
Q ss_pred HHHHHhhcccCchhhhhccc-chHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCC
Q 025675 86 TCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL 164 (249)
Q Consensus 86 ~~~~~gl~~~~a~~a~ii~~-~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~ 164 (249)
...+-+.++.+.++|.-+.+ ++-+-+.+++++.+||=-+.. -..+++...+++.. +-.+++. .++
T Consensus 74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~---------~~IlG~iAlilivi--G~~lTs~---~~~ 139 (288)
T COG4975 74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPT---------QIILGFIALILIVI--GIYLTSK---QDR 139 (288)
T ss_pred hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcch---------hHHHHHHHHHHHHH--hheEeee---ecc
Confidence 99999999999999999976 888888899999999865433 33344444433321 1111100 001
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 025675 165 HNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSI 199 (249)
Q Consensus 165 ~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~ 199 (249)
++.|.++.++.-.|....+.+.++|..|.++.+-.
T Consensus 140 ~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f 174 (288)
T COG4975 140 NNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLF 174 (288)
T ss_pred ccccccChHhhhhheeeeeeeccceeeeEeeeccc
Confidence 12223344456678888888999999888886544
No 60
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.03 E-value=0.0036 Score=47.84 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=57.3
Q ss_pred HHHH-HHHHHHHHHhhcccCchhhhhcc-cchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675 78 GLIS-CCVQTCLYVGIGYSSPTLSSAIV-DLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (249)
Q Consensus 78 g~~~-~~~~~~~~~gl~~~~a~~a~ii~-~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~ 149 (249)
.+.. ...+.++..++++.|.+.|=.+- ...-+.+.++++++++|++++. |++|+.+.++|++.+-.
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhc
Confidence 3444 78888999999999999887774 5888899999999999999999 99999999999987753
No 61
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=97.02 E-value=0.0045 Score=55.57 Aligned_cols=140 Identities=12% Similarity=0.075 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHhHhcc--CCCCCCCHHHHHHHHHHH
Q 025675 4 VGVTAVMVAVECLEVGSSTLNKAAMNK---GTSDFVLIVYSNAFAAIFILLPSTFIYYRN--RTRPPLTVSIICKIFGLG 78 (249)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~---~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~--~~~~~~~~~~~~~~~~~g 78 (249)
+.+.++.+.+++.+|++.++.|.-.++ .+|--++..+-.++..++ ++|..++...- .+.+-.+..+...++..+
T Consensus 246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnlll-lwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ 324 (416)
T KOG2765|consen 246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLL-LWPPLIILDFFGEERFELPSSTQFSLVVFNN 324 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHH-HhHHHHHHHHhccCcccCCCCceeEeeeHhh
Confidence 567889999999999999999987643 267777777777888888 88766654321 111233444455677889
Q ss_pred HHH-HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhc
Q 025675 79 LIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLY 150 (249)
Q Consensus 79 ~~~-~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~ 150 (249)
+++ +...++|.+|.-.|++-.+++=+.++--.+++.-.++.+.++++. .++|....++|-+++...
T Consensus 325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~------~iiGsi~Ifv~Fv~vn~~ 391 (416)
T KOG2765|consen 325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSAL------YIIGSIPIFVGFVIVNIS 391 (416)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHhheecc
Confidence 999 999999999999999999999888766667777888878888887 999999999998877644
No 62
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.01 E-value=0.00035 Score=60.01 Aligned_cols=136 Identities=11% Similarity=0.067 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 025675 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ 85 (249)
Q Consensus 6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 85 (249)
+....+..++.-+..++..|..-++ .+......+=.+++.+. -+......+ +.+.| -.+|++..+..+|+.|++.|
T Consensus 192 gt~aai~s~lf~asvyIilR~iGk~-~h~~msvsyf~~i~lV~-s~I~~~~ig-~~~lP-~cgkdr~l~~~lGvfgfigQ 267 (346)
T KOG4510|consen 192 GTVAAISSVLFGASVYIILRYIGKN-AHAIMSVSYFSLITLVV-SLIGCASIG-AVQLP-HCGKDRWLFVNLGVFGFIGQ 267 (346)
T ss_pred chHHHHHhHhhhhhHHHHHHHhhcc-ccEEEEehHHHHHHHHH-HHHHHhhcc-ceecC-ccccceEEEEEehhhhhHHH
Confidence 3455666777777778888876454 77666666666666655 444333222 33323 34556567788999999999
Q ss_pred HHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhcc
Q 025675 86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK 151 (249)
Q Consensus 86 ~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~ 151 (249)
++...|+|.-.++..+++.++.-+++.+.-.++++|-+++. .|+|+++.+...+.....+
T Consensus 268 IllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w------s~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 268 ILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW------SWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred HHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHH------HhhceeeeehhHHHHHHHH
Confidence 99999999999999999999999999999999999999999 8999988888877776443
No 63
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.0078 Score=52.06 Aligned_cols=173 Identities=13% Similarity=0.067 Sum_probs=115.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhHhccCC---CC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccch
Q 025675 33 SDFVLIVYSNAFAAIFILLPSTFIYYRNRT---RP--PLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLT 107 (249)
Q Consensus 33 ~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~---~~--~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~ 107 (249)
-|..++.++.+....+ ++.+.....+-.. .+ +.+.+..++.+-+.++-...-.+-++.++|.+.+---+=-.+.
T Consensus 60 ~plf~t~~qcLvt~~~-c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLt 138 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSI-CLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLT 138 (347)
T ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchh
Confidence 4888999999998888 7777665433211 12 2344433444333333222222335666777666544445678
Q ss_pred HHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 025675 108 PAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSF 187 (249)
Q Consensus 108 Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~ 187 (249)
-+|+.++++.++|+|-+.. ...++.+.+.|-.+ |.+.| +..+.-...|.++...+.+
T Consensus 139 tvFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~l-----GvdqE------------~~~~~ls~~GvifGVlaSl 195 (347)
T KOG1442|consen 139 TVFTVLLTYVLLKQKTSFF------ALGCCLLIILGFGL-----GVDQE------------GSTGTLSWIGVIFGVLASL 195 (347)
T ss_pred hhHHHHhHHhhcccccccc------cceeehhheehhee-----ccccc------------cccCccchhhhHHHHHHHH
Confidence 8999999999999998888 77777777666432 11111 1223345689999999999
Q ss_pred HHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHHHHhh
Q 025675 188 FLSLLYIVQTSIIREYPE-ELMATFICCVFVTIQSTVVALIAE 229 (249)
Q Consensus 188 ~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~g~i~~~~~~~~~~ 229 (249)
+-|...+..||......+ ....+++..+.+.+.+.|...+.+
T Consensus 196 ~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lng 238 (347)
T KOG1442|consen 196 AVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNG 238 (347)
T ss_pred HHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcc
Confidence 999999999977554432 467899999999999999877654
No 64
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.93 E-value=0.068 Score=46.93 Aligned_cols=170 Identities=16% Similarity=0.174 Sum_probs=119.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHH
Q 025675 33 SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTF 112 (249)
Q Consensus 33 ~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~ 112 (249)
+|..+.+.+-+.+.+. - ......++.. ....+.+..+-..++.+.....|.+.+++|.+=-.-.+==..=-+=++
T Consensus 50 ~~~fL~~~q~l~~~~~-s--~~~l~~~k~~--~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm 124 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLV-S--YAMLKWWKKE--LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVM 124 (327)
T ss_pred ccHHHHHHHHHHHHHH-H--HHHHhccccc--CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHH
Confidence 5778888888777766 3 2223333222 222233456677788888888999999999875544444344444456
Q ss_pred HHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 025675 113 ILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLL 192 (249)
Q Consensus 113 ~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~ 192 (249)
+++.++.+.|.+++ +-+..++.-.|+.+....+.++ + +. .....+...|..++...-.+=++.
T Consensus 125 lmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~--s----~~-----~~g~~ns~~G~~Ll~~~L~fDgfT 187 (327)
T KOG1581|consen 125 LMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD--S----SS-----KSGRENSPIGILLLFGYLLFDGFT 187 (327)
T ss_pred HHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC--C----cc-----ccCCCCchHhHHHHHHHHHHHhhH
Confidence 78999999999999 8888888888887665443221 0 00 122345678999999998888899
Q ss_pred HHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHH
Q 025675 193 YIVQTSIIREYP-EELMATFICCVFVTIQSTVV 224 (249)
Q Consensus 193 ~v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~ 224 (249)
+..|+++-++.. ++..++++..+++++.....
T Consensus 188 n~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~ 220 (327)
T KOG1581|consen 188 NATQDSLFKKYKVSSLHMMFGVNLFSAILNGTY 220 (327)
T ss_pred HhHHHHHhccCCccHhHHHHHHHHHHHHHHHHh
Confidence 999999988643 36889999999999988776
No 65
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.0026 Score=47.33 Aligned_cols=61 Identities=18% Similarity=0.140 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhcccCchhhhhc-ccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675 82 CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (249)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~a~ii-~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~ 148 (249)
..++.+...++|++|.+.|=.+ ....-+.+.+.++++++|+++.. |++|+.+.++|++.+.
T Consensus 41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence 7888889999999999988555 56888999999999999999999 9999999999998764
No 66
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.76 E-value=0.008 Score=43.74 Aligned_cols=52 Identities=15% Similarity=0.027 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhcccCchhhhh-cccchHHHHHHHHHHHhhcccceeeccccceeehHHH
Q 025675 82 CCVQTCLYVGIGYSSPTLSSA-IVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMV 139 (249)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~a~i-i~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l 139 (249)
.....++..++++.|.+.+=. ......+.+.+.+.++++|+++.+ |++|+.+
T Consensus 40 ~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l 92 (93)
T PF00893_consen 40 GLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence 778889999999999999944 466999999999999999999999 9999875
No 67
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.73 E-value=0.012 Score=43.90 Aligned_cols=61 Identities=10% Similarity=0.043 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhcccCchhhhhc-ccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675 82 CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (249)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~a~ii-~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~ 148 (249)
..++.+...++++.|.+.|=.+ ....-+.+.+.+.++++|++++. |++|+.+.++|++.+.
T Consensus 40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence 7888889999999999988665 45888899999999999999999 9999999999998764
No 68
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.61 E-value=0.073 Score=48.00 Aligned_cols=145 Identities=14% Similarity=-0.011 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHHHHHHHH-------HHHHHHHhcCCChHHHHHHHHH---HHHHHHHHHHHHhH--hccCCC---CCC-C
Q 025675 4 VGVTAVMVAVECLEVGSS-------TLNKAAMNKGTSDFVLIVYSNA---FAAIFILLPSTFIY--YRNRTR---PPL-T 67 (249)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~-------~~~k~~~~~~~~p~~~~~~R~~---~a~i~~ll~~~~~~--~~~~~~---~~~-~ 67 (249)
.|+++.++++.+..++.+ ...+.+.+.|.+|.....-.+. .+..++-+.+.... +++... .+. +
T Consensus 173 ~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~ 252 (345)
T PRK13499 173 KKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLA 252 (345)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcccc
Confidence 588899999999999998 6666665667887766655554 44444122222221 211110 111 2
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhh---cc-cchHHHHHHHHHHHhhcccceeeccccceeehHHH
Q 025675 68 ----VSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSA---IV-DLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMV 139 (249)
Q Consensus 68 ----~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~i---i~-~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l 139 (249)
+++...-.+.|+.-...+.+|..|-+..+.+.+.+ +. .+.-++..+-+. ++||+=+-.++--+..++|+++
T Consensus 253 ~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vl 331 (345)
T PRK13499 253 KPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVV 331 (345)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHH
Confidence 33333334445554777888899988887766666 65 444466666666 5899877322233447889999
Q ss_pred hhhhhhhhhh
Q 025675 140 SIAGALTVTL 149 (249)
Q Consensus 140 ~~~Gv~li~~ 149 (249)
.+.|++++..
T Consensus 332 iI~g~~lig~ 341 (345)
T PRK13499 332 IILAANIVGL 341 (345)
T ss_pred HHHHHHHHhh
Confidence 9999887653
No 69
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.58 E-value=0.03 Score=43.85 Aligned_cols=105 Identities=17% Similarity=0.158 Sum_probs=73.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhccc-chHHHH
Q 025675 33 SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVD-LTPAFT 111 (249)
Q Consensus 33 ~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~-~~Pv~~ 111 (249)
+|..-+++-+..+.+. +..+....+++.. ++.+... .+...=|++|...-.+..+..++.+++++..+.- -+-+..
T Consensus 29 s~~~as~i~~~~G~i~-~~i~~~~~~~~~~-~~~~~~p-~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~s 105 (138)
T PF04657_consen 29 SPLVASFISFGVGFIL-LLIILLITGRPSL-ASLSSVP-WWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIAS 105 (138)
T ss_pred ccHHHHHHHHHHHHHH-HHHHHHHhccccc-chhccCC-hHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 5999999999999998 7777666554321 2221111 2344467788888888899999999999888865 444444
Q ss_pred HHHHHH----HhhcccceeeccccceeehHHHhhhhhhh
Q 025675 112 FILALI----SRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (249)
Q Consensus 112 ~~ls~~----~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~l 146 (249)
.++..+ .-+++++.+ |++|+.+.++|+.+
T Consensus 106 l~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 106 LLIDHFGLFGAPKRPFSLR------RILGLALMIAGVIL 138 (138)
T ss_pred HHHHHccccCCCCCCCCHH------HHHHHHHHHHHHhC
Confidence 555553 245777777 99999999999853
No 70
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.048 Score=48.20 Aligned_cols=73 Identities=19% Similarity=0.385 Sum_probs=62.8
Q ss_pred HHHHHHHH-HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccC
Q 025675 74 IFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKG 152 (249)
Q Consensus 74 ~~~~g~~~-~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~ 152 (249)
....|++- ......-|.++.+.|++..+.+.++.-+...+++..+++||+++. -.+|+.++++|-.+++. +.
T Consensus 66 ~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~-ha 138 (335)
T KOG2922|consen 66 LWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVI-HA 138 (335)
T ss_pred HHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEE-ec
Confidence 44556666 677777788999999999999999999999999999999999999 99999999999987763 34
Q ss_pred C
Q 025675 153 P 153 (249)
Q Consensus 153 ~ 153 (249)
|
T Consensus 139 P 139 (335)
T KOG2922|consen 139 P 139 (335)
T ss_pred C
Confidence 4
No 71
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=95.91 E-value=0.011 Score=52.41 Aligned_cols=68 Identities=24% Similarity=0.384 Sum_probs=60.2
Q ss_pred HHHHHH-HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675 76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (249)
Q Consensus 76 ~~g~~~-~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~ 149 (249)
+.|+.- .....+.+.++.+.|++..+.+....-++..+++..++|||++++ .++|+.+++.|..++..
T Consensus 54 ~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 54 WIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVI 122 (300)
T ss_pred HHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEE
Confidence 345554 667788899999999999999999999999999999999999999 99999999999987763
No 72
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=95.49 E-value=0.12 Score=44.89 Aligned_cols=180 Identities=16% Similarity=0.106 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchhhhhcccchHHHHHH
Q 025675 35 FVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGY-SSPTLSSAIVDLTPAFTFI 113 (249)
Q Consensus 35 ~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~-~~a~~a~ii~~~~Pv~~~~ 113 (249)
..+++.++++-+.- =++..--. ...+ ++.+.|++.. .+..+ +....+-++++++ ++...=.++-.-.++-.+.
T Consensus 34 NLITFaqFlFia~e-Glif~skf-~~~k-~kiplk~Y~i--~V~mF-F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~ 107 (330)
T KOG1583|consen 34 NLITFAQFLFIATE-GLIFTSKF-FTVK-PKIPLKDYAI--TVAMF-FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMI 107 (330)
T ss_pred eehHHHHHHHHHHh-ceeeeccc-cccC-CCCchhhhhe--ehhee-eeeeeeccceeeecccceEEEEEecCcHHHHHH
Confidence 56778888777665 33332111 1122 5666665332 22222 4555666788887 4655556667788999999
Q ss_pred HHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 025675 114 LALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLY 193 (249)
Q Consensus 114 ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~ 193 (249)
+++++.+.|-+.+ |+..+++.-+|+++.+..+.++...-. +.-++++...+..-+.+|+.+...+-+.-|...
T Consensus 108 ~g~il~~k~Ys~~------Qy~Sv~~iTiGiiIcTl~s~~d~~~~~-~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mg 180 (330)
T KOG1583|consen 108 LGWILLGKRYSLR------QYSSVLMITIGIIICTLFSSKDGRSKL-SGLDSGSAQSDFFWWLIGIALLVFALLLSAYMG 180 (330)
T ss_pred HHHHhccceeehh------hhhhHHhhhhhheeEEeecCcchhhhh-cccccCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999988765443222100 000112222333456889999988888888888
Q ss_pred HHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHHhhcC
Q 025675 194 IVQTSIIREYP-EELMATFICCVFVTIQSTVVALIAERN 231 (249)
Q Consensus 194 v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~~~~~ 231 (249)
+.|+..-|++. ++-+..+|.=.. .+|..++..+|
T Consensus 181 iyqE~~Y~kyGKh~~EalFytH~L----sLP~Flf~~~d 215 (330)
T KOG1583|consen 181 IYQETTYQKYGKHWKEALFYTHFL----SLPLFLFMGDD 215 (330)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHh----ccchHHHhcch
Confidence 88888877653 356777776543 45555555444
No 73
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.02 E-value=0.041 Score=46.76 Aligned_cols=73 Identities=16% Similarity=0.234 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675 70 IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (249)
Q Consensus 70 ~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~ 148 (249)
.+..+.+.++.+++.|.+.+.-+.+-+|-..++++.+--.|+++.|+++++.+++.| +|+|..+.|.|...=.
T Consensus 240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhHh
Confidence 345567778888999999999999999999999999999999999999999999999 9999999999986533
No 74
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=94.71 E-value=0.083 Score=44.31 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhh
Q 025675 77 LGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGAL 145 (249)
Q Consensus 77 ~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~ 145 (249)
..+.++..+.+..+-+++.++..-+......++++.+++.++++|+++.. ++.|+.+.+.|+.
T Consensus 158 ~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~ 220 (222)
T TIGR00803 158 VGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF 220 (222)
T ss_pred HHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence 33444667778889999999999999999999999999999999999999 9999999988864
No 75
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=94.65 E-value=0.46 Score=41.07 Aligned_cols=215 Identities=12% Similarity=0.009 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 025675 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ 85 (249)
Q Consensus 6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 85 (249)
++++.+++.+.+|.+++-.|..- . -|++.+-.+-.....+. -+......+ . ++.. .+-++=|.+.+..+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~-~-gDg~~fQw~~~~~i~~~-g~~v~~~~~---~-p~f~----p~amlgG~lW~~gN 69 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFD-T-GDGFFFQWVMCSGIFLV-GLVVNLILG---F-PPFY----PWAMLGGALWATGN 69 (254)
T ss_pred CchhHHHHHHHhcccceeeEecc-C-CCcHHHHHHHHHHHHHH-HHHHHHhcC---C-Ccce----eHHHhhhhhhhcCc
Confidence 46788899999999999999753 3 47755554444333333 222222211 1 2222 12223344446667
Q ss_pred HHHHHhhcccCchhhhhcccchHHHH-HHHHHH-HhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccc---cC-
Q 025675 86 TCLYVGIGYSSPTLSSAIVDLTPAFT-FILALI-SRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVS---MS- 159 (249)
Q Consensus 86 ~~~~~gl~~~~a~~a~ii~~~~Pv~~-~~ls~~-~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~---~~- 159 (249)
.+-.-.++.++.+..-.+-++.-+.+ ...+.+ +++++.+.. ...+...+|++++++|..+..+-|.+..++ .+
T Consensus 70 ~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~-~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~ 148 (254)
T PF07857_consen 70 ILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVP-SSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEE 148 (254)
T ss_pred eeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccccc-chhHHHHHHHHHHHHHHHheeeecCCCCCccccccc
Confidence 77778888888888888866543333 333333 444433221 234558899999999988766543321110 00
Q ss_pred ----CCCCCCC-------CCC------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-------chh--HH--HH
Q 025675 160 ----SSSNLHN-------ELR------SPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP-------EEL--MA--TF 211 (249)
Q Consensus 160 ----~~~~~~~-------~~~------~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~-------~~~--~~--~~ 211 (249)
.+++++. ++. +..++.+.|+++++.+++.|+...+=.....++.+ +++ .. ..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~ 228 (254)
T PF07857_consen 149 TPLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFS 228 (254)
T ss_pred cccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHh
Confidence 0001110 011 11124688999999999999997755454444431 112 22 22
Q ss_pred HHHHHHHHHHHHHHHHhhcCC
Q 025675 212 ICCVFVTIQSTVVALIAERNP 232 (249)
Q Consensus 212 ~~~~~g~i~~~~~~~~~~~~~ 232 (249)
-.++.+++.+.....+...++
T Consensus 229 GIfltSt~~F~~Y~~~~rn~P 249 (254)
T PF07857_consen 229 GIFLTSTVYFVIYCIIKRNKP 249 (254)
T ss_pred hHHHHHHHHHHHHHHhhcCCC
Confidence 334455566666666654333
No 76
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.29 E-value=0.63 Score=36.88 Aligned_cols=135 Identities=14% Similarity=0.046 Sum_probs=78.6
Q ss_pred chhHHHHHHHHHHHHHHH-HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH
Q 025675 3 SVGVTAVMVAVECLEVGS-STLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS 81 (249)
Q Consensus 3 ~~~~~~~~l~~~~~wg~~-~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (249)
....++..+.+..+-..- .+-.+..... =+|..-.+..+..+.+. ++.+.+. .++........+...+...=|++|
T Consensus 3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~-~spl~As~isf~vGt~~-L~~l~l~-~~~~~~~a~~~~~pwW~~~GG~lG 79 (150)
T COG3238 3 MYLYLLFAILAGALLPLQAAINGRLARYL-GSPLLASLISFLVGTVL-LLILLLI-KQGHPGLAAVASAPWWAWIGGLLG 79 (150)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHHc-CChHHHHHHHHHHHHHH-HHHHHHH-hcCCCchhhccCCchHHHHccchh
Confidence 344444444444444443 3445544433 36999999999999998 8777776 333321221122223444556666
Q ss_pred HHHHHHHHHhhcccCchhhhhcc-cchHHHHHHHHHH-Hhh---cccceeeccccceeehHHHhhhhhhh
Q 025675 82 CCVQTCLYVGIGYSSPTLSSAIV-DLTPAFTFILALI-SRM---EKLDLRVQSSLAKSIGTMVSIAGALT 146 (249)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~a~ii~-~~~Pv~~~~ls~~-~~~---Ek~~~~~~~s~~~~~g~~l~~~Gv~l 146 (249)
..+-..-.......++++...+. .-+-+...++-.+ +++ .++++. |+.|+++.++|+.+
T Consensus 80 a~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~------r~lgi~L~l~gil~ 143 (150)
T COG3238 80 AIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLP------RILGILLVLAGILL 143 (150)
T ss_pred hhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHH------HHHHHHHHHHHHHH
Confidence 55555556677777666665553 4555555555443 232 444555 99999999999544
No 77
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.23 E-value=0.57 Score=41.28 Aligned_cols=136 Identities=12% Similarity=0.073 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhHhccCC----CCCCCHHHHHHHHHHHHH
Q 025675 6 VTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT----RPPLTVSIICKIFGLGLI 80 (249)
Q Consensus 6 ~~~~~l~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~ 80 (249)
++.++..-..+=|.+...-+...++ ++++..+.+.-.++.++. ........+ ..+ +-+.+.+-+..+++....
T Consensus 173 G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~-~~~~li~qg-~~~~av~F~~~hp~~~~Di~l~s~~ 250 (327)
T KOG1581|consen 173 GILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAIL-NGTYLILQG-HLLPAVSFIKEHPDVAFDILLYSTC 250 (327)
T ss_pred hHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHH-HHHhhhcCC-CCchHHHHHHcChhHHHHHHHHHHh
Confidence 3444444444444555444444433 589999999999998887 666533322 121 123455666778888888
Q ss_pred HHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675 81 SCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (249)
Q Consensus 81 ~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~ 149 (249)
|+..|.+.+.-++.-++-.-+.++.+==++.++++.+.+++++++. +|.|+.+.|.|+.+=+.
T Consensus 251 gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~~ 313 (327)
T KOG1581|consen 251 GAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEIL 313 (327)
T ss_pred hhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHHH
Confidence 8888988888888877777777777888999999999999999999 99999999999876543
No 78
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=93.98 E-value=0.26 Score=38.37 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------CCchhHHHHHHHHHHHHHHHHHHHHhhcC
Q 025675 178 GGLVLAAGSFFLSLLYIVQTSIIRE------YPEELMATFICCVFVTIQSTVVALIAERN 231 (249)
Q Consensus 178 G~~~~l~aa~~~a~~~v~~k~~~~~------~~~~~~~~~~~~~~g~i~~~~~~~~~~~~ 231 (249)
|.++++.+.++.|++.+++|+..++ ..++.+...+....+.+.+.|..++.|+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~ 60 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGP 60 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6788999999999999999998776 22479999999999999999999988764
No 79
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.84 E-value=0.54 Score=41.60 Aligned_cols=137 Identities=14% Similarity=0.108 Sum_probs=94.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhHhcc----C-CCCCCCHHHHHHHHHHH
Q 025675 5 GVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRN----R-TRPPLTVSIICKIFGLG 78 (249)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~----~-~~~~~~~~~~~~~~~~g 78 (249)
.+|.++....+.=.......|.-.+. +.+-+.+.++..+++... +.....+.+.. . .....+...+..+.+-+
T Consensus 157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~-l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc 235 (314)
T KOG1444|consen 157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPP-LLILSFITGELDALSLNFDNWSDSSVLVVMLLSC 235 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHH-HHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence 46777777777777777777776654 467888999999999888 66666554421 1 10112223345566666
Q ss_pred HHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675 79 LISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (249)
Q Consensus 79 ~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~ 148 (249)
+.+..-..+-++-.+.+|+...++.....-..+.+...+++++++++. ..+|+.+++.|-++=.
T Consensus 236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVLYS 299 (314)
T ss_pred HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhHHh
Confidence 677666667788888899998888884444444444455677888888 9999999999987654
No 80
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=93.46 E-value=0.36 Score=40.84 Aligned_cols=171 Identities=9% Similarity=0.071 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHHH
Q 025675 34 DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFI 113 (249)
Q Consensus 34 p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ 113 (249)
-+.+.+.+.+.+.+. ++.+-..+--+. +..+.|.|.. .+++-...-..--.+++|.+...-+++-++.-+.+..
T Consensus 37 nflll~vQSlvcvv~-l~iLk~l~~~~f--R~t~aK~Wfp---iSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAy 110 (309)
T COG5070 37 NFLLLAVQSLVCVVG-LLILKFLRLVEF--RLTKAKKWFP---ISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAY 110 (309)
T ss_pred hhHHHHHHHHHHHHH-HHHHHHHhHhhe--ehhhhhhhcC---HHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHh
Confidence 457778888888887 666543322122 1222232222 1222211112224789999999999999999999999
Q ss_pred HHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 025675 114 LALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLY 193 (249)
Q Consensus 114 ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~ 193 (249)
....+++.|++.. ......+-+..-..-. .++... . .-..+..+.|.++.......-+.+.
T Consensus 111 gEvl~Fgg~vtsl------~l~SFilMvlSS~va~--w~D~q~------~-----~~~~~~lN~GY~Wm~~NclssaafV 171 (309)
T COG5070 111 GEVLFFGGRVTSL------ELLSFILMVLSSVVAT--WGDQQA------S-----AFKAQILNPGYLWMFTNCLSSAAFV 171 (309)
T ss_pred hHHHHhcCccchh------hHHHHHHHHHHHHHhc--cchhhH------H-----HHHhcccCCceEEEehhhHhHHHHH
Confidence 9999999999877 5555444333332222 121100 0 0011234568899999999999999
Q ss_pred HHHHHHHh--hCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 025675 194 IVQTSIIR--EYPEELMATFICCVFVTIQSTVVALIAER 230 (249)
Q Consensus 194 v~~k~~~~--~~~~~~~~~~~~~~~g~i~~~~~~~~~~~ 230 (249)
...||..| +..+ ...++|..+.+.-.+..+.+++|+
T Consensus 172 L~mrkri~ltNf~d-~dtmfYnNllslPiL~~~s~~~ed 209 (309)
T COG5070 172 LIMRKRIKLTNFKD-FDTMFYNNLLSLPILLSFSFLFED 209 (309)
T ss_pred HHHHHhhcccccch-hhHHHHhhhHHHHHHHHHHHHhcc
Confidence 88888755 3444 788999999999888888888765
No 81
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.55 E-value=0.73 Score=40.15 Aligned_cols=178 Identities=13% Similarity=0.134 Sum_probs=108.4
Q ss_pred CCCh--HHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhccc--c
Q 025675 31 GTSD--FVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVD--L 106 (249)
Q Consensus 31 ~~~p--~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~--~ 106 (249)
|+.| +.+++.+++.-..+ -+.-... .+..+ +..+|| ....++.+-.....+-.-++.|.+=-.-.++-. +
T Consensus 70 gfkp~GWylTlvQf~~Ysg~-glie~~~-~~~k~-r~iP~r---tY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKl 143 (367)
T KOG1582|consen 70 GFKPFGWYLTLVQFLVYSGF-GLIELQL-IQTKR-RVIPWR---TYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKL 143 (367)
T ss_pred cCcccchHHHHHHHHHHHhh-hheEEEe-ecccc-eecchh---HhhhhHhhhhhccccCcCccccccCcHHHHHHhhhh
Confidence 4555 36777777766544 2221111 11111 334554 333334433344444444555543332222222 3
Q ss_pred hHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 025675 107 TPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGS 186 (249)
Q Consensus 107 ~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa 186 (249)
.|+ .+.+.+.-+.|-.+. ...+..+-..|.++.+..|.. .++ +-...|..+.-.|-
T Consensus 144 iPV--miggifIqGkRY~v~------d~~aA~lm~lGli~FTLADs~---------------~sP-NF~~~Gv~mIsgAL 199 (367)
T KOG1582|consen 144 IPV--MIGGIFIQGKRYGVH------DYIAAMLMSLGLIWFTLADSQ---------------TSP-NFNLIGVMMISGAL 199 (367)
T ss_pred hhh--hheeeeeccccccHH------HHHHHHHHHHHHHhhhhcccc---------------cCC-CcceeeHHHHHHHH
Confidence 443 345666767776666 888888889999888865442 112 23467888888888
Q ss_pred HHHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 025675 187 FFLSLLYIVQTSIIREYPE-ELMATFICCVFVTIQSTVVALIAERNPNSWRLK 238 (249)
Q Consensus 187 ~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 238 (249)
+.=|.-.-+|+|..+..+. ..++.+++..+|....+..+...++-++.|+..
T Consensus 200 l~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fc 252 (367)
T KOG1582|consen 200 LADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFC 252 (367)
T ss_pred HHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHH
Confidence 8888888888888887653 356888999999999888888877666777654
No 82
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=90.41 E-value=0.17 Score=43.27 Aligned_cols=75 Identities=16% Similarity=0.075 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhh
Q 025675 72 CKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (249)
Q Consensus 72 ~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~ 148 (249)
..-+..|+.....+.+++.+-+..+.+.+--+..+..+...+-+.++++||=++|++.- .++|+++.++|+.++.
T Consensus 210 ~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~--v~iGiilivvgai~lg 284 (288)
T COG4975 210 WLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVY--VIIGIILIVVGAILLG 284 (288)
T ss_pred HHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhh--hhhhHHHHHHHhhhhh
Confidence 33456687778889999999999888888777888888888889999999999986532 5677777778877654
No 83
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=90.23 E-value=4.5 Score=35.93 Aligned_cols=135 Identities=17% Similarity=0.144 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHHHhHhccCCC------CCC----CHHH
Q 025675 5 GVTAVMVAVECLEVGSSTLNKAAMNKG----TSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR------PPL----TVSI 70 (249)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~----~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~------~~~----~~~~ 70 (249)
.+..+...+.++-|.-+.+++..++++ -+|+...+.-.-.-.+. ++|..+..++.... ... -++.
T Consensus 164 ~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~-Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv 242 (349)
T KOG1443|consen 164 EGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIG-LLPLSLLFEGLHLITSSSIFRFQDTGLILRV 242 (349)
T ss_pred hhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHH-HHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence 567778888888888888888887652 25776665555555555 66666655442211 001 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhh
Q 025675 71 ICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (249)
Q Consensus 71 ~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~l 146 (249)
...+.+-|.+.++--.+.+.=+..|+.-..++..-.-=+.+.+++....+|+++.. .|.|..++..|+..
T Consensus 243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~l------N~~Gl~i~~agi~~ 312 (349)
T KOG1443|consen 243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLL------NWLGLAICLAGILL 312 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHH
Confidence 22233333333333344555566676666666666666788899999999999988 99999999999865
No 84
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=89.95 E-value=5.2 Score=34.28 Aligned_cols=127 Identities=9% Similarity=-0.023 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-H
Q 025675 5 GVTAVMVAVECLEVGSSTLNKAAMNKG-TSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-C 82 (249)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~-~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~ 82 (249)
.++++++.++++-|...+.....++++ .+...-...-+..+.++ .++......+.....+.-.+.+-...+.-++. +
T Consensus 114 ~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~-~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a 192 (244)
T PF04142_consen 114 LGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILF-NLLALLLSDGSAISESGFFHGYSWWVWIVIFLQA 192 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH-HHHHHhcccccccccCCchhhcchHHHHHHHHHH
Confidence 567888888999999999998888763 34444444445555555 44443332221110111111111122222222 5
Q ss_pred HHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHH
Q 025675 83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTM 138 (249)
Q Consensus 83 ~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~ 138 (249)
...+....-+||.+.-.=..-....-+++.+++..+++.+++.. ..+|..
T Consensus 193 ~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~------f~lg~~ 242 (244)
T PF04142_consen 193 IGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLS------FLLGAA 242 (244)
T ss_pred HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchH------Hhhhee
Confidence 55566667788887777777778888999999999999999887 666654
No 85
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=87.48 E-value=0.72 Score=33.98 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 025675 187 FFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER 230 (249)
Q Consensus 187 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~ 230 (249)
++|+.+.+..|+..++.| |...+++++..+++ ..+.....++
T Consensus 1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 42 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGR 42 (126)
T ss_pred ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcc
Confidence 468999999999999987 79999999999998 6666666543
No 86
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=87.43 E-value=4.4 Score=35.64 Aligned_cols=136 Identities=11% Similarity=0.174 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHhHh-----ccCC-CCCCCHHHHHH----
Q 025675 5 GVTAVMVAVECLEVGSSTLNKAAM-NKGTSDFVLIVYSNAFAAIFILLPSTFIYY-----RNRT-RPPLTVSIICK---- 73 (249)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~-~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~-----~~~~-~~~~~~~~~~~---- 73 (249)
.+.++.+.++++-+.-+++=..-+ ..+++|.+.+.|..+++.++ +-.+..... ++.. -++..+.++..
T Consensus 176 tGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~-~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~ 254 (372)
T KOG3912|consen 176 TGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVI-LSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAA 254 (372)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHH-HHHHHHHHhheecCCcCcCCCCcchhhHHHHHHH
Confidence 466888999999999888765444 44799999999999999665 444433321 1111 13444444432
Q ss_pred -----HHHHHHHH-HHHHHHH-HHhh---cccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhh
Q 025675 74 -----IFGLGLIS-CCVQTCL-YVGI---GYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAG 143 (249)
Q Consensus 74 -----~~~~g~~~-~~~~~~~-~~gl---~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~G 143 (249)
.+.+.+.+ ...-.+| +.|+ ++.++++=.++-..-..++.+++.....|++..- ++.|.++-..|
T Consensus 255 ~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll------qilGFliLi~G 328 (372)
T KOG3912|consen 255 LQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL------QILGFLILIMG 328 (372)
T ss_pred hcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 12222333 2222222 2333 4458888888888888888888999999999998 99999999999
Q ss_pred hhhh
Q 025675 144 ALTV 147 (249)
Q Consensus 144 v~li 147 (249)
+++-
T Consensus 329 i~lY 332 (372)
T KOG3912|consen 329 IILY 332 (372)
T ss_pred HHHH
Confidence 8753
No 87
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=86.08 E-value=2.9 Score=35.53 Aligned_cols=111 Identities=17% Similarity=0.204 Sum_probs=82.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhHhccCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccchH
Q 025675 32 TSDFVLIVYSNAFAAIFILLPSTFIYYRNRT---RPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTP 108 (249)
Q Consensus 32 ~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~~P 108 (249)
.-..+-.++..+++..+ ++.+....+.... ....+-....+.++.|+...+-..+-.+-+.-++.+.-+.+.++.-
T Consensus 183 f~d~dtmfYnNllslPi-L~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNK 261 (309)
T COG5070 183 FKDFDTMFYNNLLSLPI-LLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNK 261 (309)
T ss_pred cchhhHHHHhhhHHHHH-HHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhh
Confidence 55778899999999999 8887776543211 0112223334566666665555566678888899999999998888
Q ss_pred HHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675 109 AFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (249)
Q Consensus 109 v~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~ 149 (249)
.-..+-|.++++|+.++. ++..+++++...++-..
T Consensus 262 lp~alaGlvffdap~nf~------si~sillGflsg~iYav 296 (309)
T COG5070 262 LPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYAV 296 (309)
T ss_pred ChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHHH
Confidence 888889999999999999 99999999887665543
No 88
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=82.25 E-value=18 Score=26.93 Aligned_cols=113 Identities=18% Similarity=0.143 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC----hH--HHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHH
Q 025675 6 VTAVMVAVECLEVGSSTLNKAAMNKGTS----DF--VLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGL 79 (249)
Q Consensus 6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~----p~--~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 79 (249)
-...++.+..+||.+..+.|..... .+ |- ...+.|-.-. . -.+|+.+..+ +
T Consensus 4 ~~~~lvaVgllWG~Tnplirrgs~g-~~~v~~~~~k~~~~lqe~~t---------------l---~l~w~Y~iPF----l 60 (125)
T KOG4831|consen 4 DMDKLVAVGLLWGATNPLIRRGSLG-WDKVKSSSRKIMIALQEMKT---------------L---FLNWEYLIPF----L 60 (125)
T ss_pred HHHHHHHHHHHHccccHHHHHHHhh-HhhccCchHHHHHHHHHHHH---------------H---HHhHHHHHHH----H
Confidence 4566788999999999999987532 22 21 1111111111 0 1233322221 2
Q ss_pred HHHHHHHHHHHhhcccCchhhhhcccc-hHHHHHHHHHHHhhccc-ceeeccccceeehHHHhhhhhhhhh
Q 025675 80 ISCCVQTCLYVGIGYSSPTLSSAIVDL-TPAFTFILALISRMEKL-DLRVQSSLAKSIGTMVSIAGALTVT 148 (249)
Q Consensus 80 ~~~~~~~~~~~gl~~~~a~~a~ii~~~-~Pv~~~~ls~~~~~Ek~-~~~~~~s~~~~~g~~l~~~Gv~li~ 148 (249)
++-+...+|+.-+++++-+.|+-+.++ .-.|+...+..+ +|+. ..+ .+.|+.+...|+.+++
T Consensus 61 lNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~------a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 61 LNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGL------ALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccce------eehhhhHHhhhhhhee
Confidence 345666788999999999999999874 555666666655 5555 444 8899999999986653
No 89
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=82.14 E-value=30 Score=31.24 Aligned_cols=210 Identities=11% Similarity=0.039 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHHHHHhHhccCC----CCCCCHHHHHHHHHHHH
Q 025675 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIV-YSNAFAAIFILLPSTFIYYRNRT----RPPLTVSIICKIFGLGL 79 (249)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~-~R~~~a~i~~ll~~~~~~~~~~~----~~~~~~~~~~~~~~~g~ 79 (249)
.+.+...+..+.=|+.++-.|...+ - +.+-.. ....++-+ ++|...-.-.-.. ....+...+....+.|+
T Consensus 7 ~Gii~h~iGg~~~~sfy~P~kkvk~--W-sWEs~Wlv~gi~swl--i~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 7 LGIIFHAIGGFASGSFYVPFKKVKG--W-SWESYWLVQGIFSWL--IVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred HHHHHHHHHHHHhhhhccchhhcCC--c-cHHHHHHHHHHHHHH--HHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 4667777888888888888886532 2 223222 23334433 3555433211000 01223334455566677
Q ss_pred HHHHHHHHHHHhhcccCchhhhhc-ccchHHHHHHHHHHHhhcccc--eeeccccceeehHHHhhhhhhhhhhccCCccc
Q 025675 80 ISCCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLD--LRVQSSLAKSIGTMVSIAGALTVTLYKGPALV 156 (249)
Q Consensus 80 ~~~~~~~~~~~gl~~~~a~~a~ii-~~~~Pv~~~~ls~~~~~Ek~~--~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~~ 156 (249)
+-......|=.+++|.+.+...-+ ..+.-++-.++-.++.++ .+ .....++..++|++++++|+.++.... ..+
T Consensus 82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~-~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG--~~K 158 (344)
T PF06379_consen 82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGT-FDELLATPSGQIVLLGVAVCLIGIAICGKAG--SMK 158 (344)
T ss_pred HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCc-ccccccCCCchhhhhHHHHHHHHHHHHhHHH--Hhh
Confidence 666666777788888766554333 234444444443333221 11 001124458999999999999876431 111
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH-------Hh-hCCc---hhHHHHHHHHHHHHHHHHHH
Q 025675 157 SMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSI-------IR-EYPE---ELMATFICCVFVTIQSTVVA 225 (249)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~-------~~-~~~~---~~~~~~~~~~~g~i~~~~~~ 225 (249)
|++..+.....+...|.+.++.+.+.-|++++-...- .+ ..++ ........+.-|.+.-+...
T Consensus 159 ------e~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc 232 (344)
T PF06379_consen 159 ------EKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYC 232 (344)
T ss_pred ------hhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHH
Confidence 1111112223456789999999998888877653221 11 0111 01244455566667777776
Q ss_pred HHh
Q 025675 226 LIA 228 (249)
Q Consensus 226 ~~~ 228 (249)
++.
T Consensus 233 ~~~ 235 (344)
T PF06379_consen 233 LIL 235 (344)
T ss_pred HHH
Confidence 654
No 90
>COG2510 Predicted membrane protein [Function unknown]
Probab=79.16 E-value=10 Score=29.40 Aligned_cols=50 Identities=18% Similarity=0.119 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 025675 179 GLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAE 229 (249)
Q Consensus 179 ~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~ 229 (249)
..+++++++++++..++.|--.++.+ |...+....+...+.+..+.+..+
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g 54 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTG 54 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999998888775 688899999999888888877654
No 91
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=77.58 E-value=12 Score=31.19 Aligned_cols=99 Identities=9% Similarity=0.022 Sum_probs=60.9
Q ss_pred hhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhccCCcc--cc-----cCCCCCCCCC-CC
Q 025675 98 TLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPAL--VS-----MSSSSNLHNE-LR 169 (249)
Q Consensus 98 ~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~~~~~--~~-----~~~~~~~~~~-~~ 169 (249)
......-+..|+++.+.++...+||.+.. |++++++...|++.....+.+.. .. ...+ .++.+ ..
T Consensus 5 Pa~~~~~s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~-~~~~~~~~ 77 (222)
T TIGR00803 5 PIHIIFKQNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQ-MVQSSAKT 77 (222)
T ss_pred cchHHHHhcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeee-cCCCCccc
Confidence 33455567888999999999999998877 99999999999875332211000 00 0000 00000 00
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 025675 170 SPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREY 203 (249)
Q Consensus 170 ~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~ 203 (249)
...++...|....+.+.++-++..+++++..|+.
T Consensus 78 ~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~ 111 (222)
T TIGR00803 78 LMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDG 111 (222)
T ss_pred cccccHHHHHHHHHHHHHHHhhhHHHHHHcccCC
Confidence 1123556788878888887778888888876553
No 92
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=76.29 E-value=5.2 Score=35.00 Aligned_cols=114 Identities=12% Similarity=0.102 Sum_probs=79.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhHhccCC-C---CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhcccc
Q 025675 31 GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT-R---PPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDL 106 (249)
Q Consensus 31 ~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~-~---~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~a~~a~ii~~~ 106 (249)
+-+..+++++.+.++.+. ++......+.-.. + .+-++|.....++.++.+.+.+-+-..=++.-++..|+.++..
T Consensus 217 ~~ss~EmvfySy~iG~vf-lf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTa 295 (367)
T KOG1582|consen 217 PASSSEMVFYSYGIGFVF-LFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTA 295 (367)
T ss_pred CCCcceEEEeeecccHHH-HHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHh
Confidence 456788899999999998 6655555443111 0 1234555566666666665555444444555688888889988
Q ss_pred hHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhcc
Q 025675 107 TPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK 151 (249)
Q Consensus 107 ~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~ 151 (249)
--..++++|++++.++++.+ ..-|-++.+.|+.+=...|
T Consensus 296 RKavTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 296 RKAVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HhHHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhhcccC
Confidence 89999999999999999998 7778888888986544333
No 93
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=73.51 E-value=4 Score=35.39 Aligned_cols=131 Identities=12% Similarity=0.072 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 025675 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC 83 (249)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 83 (249)
|+-.++++.+-+++.+.+.=....++ .|-.++...-.++++++ -.+- .+..|+.. ...+|.......+...+. ++
T Consensus 166 ~GD~lvi~GATlYaVSNv~EEflvkn-~d~~elm~~lgLfGaII-saIQ-~i~~~~~~-~tl~w~~~i~~yl~f~L~MFl 241 (336)
T KOG2766|consen 166 KGDFLVIAGATLYAVSNVSEEFLVKN-ADRVELMGFLGLFGAII-SAIQ-FIFERHHV-STLHWDSAIFLYLRFALTMFL 241 (336)
T ss_pred cCcEEEEecceeeeeccccHHHHHhc-CcHHHHHHHHHHHHHHH-HHHH-Hhhhccce-eeEeehHHHHHHHHHHHHHHH
Confidence 34455667788888888888887777 89999999999999988 6665 33444333 334442212222223333 55
Q ss_pred HHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhh
Q 025675 84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (249)
Q Consensus 84 ~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li 147 (249)
.+.+.-+=++..+++.-.+-.-+.-.+..++ ..++-+++|. -..+......|.++-
T Consensus 242 lYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wL------Y~laF~~i~~GliiY 297 (336)
T KOG2766|consen 242 LYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWL------YFLAFATIATGLIIY 297 (336)
T ss_pred HHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhh------hHHHHHHHHHhhEEe
Confidence 5555555566666664444334445555554 3456667777 788888888887653
No 94
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=73.12 E-value=21 Score=27.67 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 025675 179 GLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER 230 (249)
Q Consensus 179 ~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~ 230 (249)
.++++.+.+.-+....++.+..++..+|...+++....|.+.+.....+.++
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~ 54 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGR 54 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5678899999999999999999988768999999999999999888887765
No 95
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.49 E-value=13 Score=32.56 Aligned_cols=140 Identities=18% Similarity=0.094 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhHhc--cCC-CCC-CCHHHHHHHHHHHH
Q 025675 5 GVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYR--NRT-RPP-LTVSIICKIFGLGL 79 (249)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~i~~ll~~~~~~~~--~~~-~~~-~~~~~~~~~~~~g~ 79 (249)
.+.+.-+.+.+.-+.+.+..|..+.. |-.-+.++++....+.++ .+|+..+.+. +.. .+. ..++.|..+.+-|+
T Consensus 185 ~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lL-flpll~lnge~~~v~~~~~l~a~~Fw~~mtLsgl 263 (347)
T KOG1442|consen 185 IGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLL-FLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGL 263 (347)
T ss_pred hhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHH-HHHHHHHcchHHHHcCcccchHHHHHHHHHHHHH
Confidence 45566666777777888888865533 223568899999999999 9998877542 111 122 35566666666677
Q ss_pred HHHHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhcc
Q 025675 80 ISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK 151 (249)
Q Consensus 80 ~~~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~~ 151 (249)
.|+.-..--.+=+|-|+|-.=.+-...-...=.+++..+++|.-+.. .|.+-.+.+.|-..-+..|
T Consensus 264 fgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~l------wwtsn~~vLvgs~~YT~vk 329 (347)
T KOG1442|consen 264 FGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGL------WWTSNIVVLVGSLAYTLVK 329 (347)
T ss_pred HHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhh------eeeeeEEEEehhHHHHHHH
Confidence 66322222233455566655444444445556788899999998877 7888888888876655443
No 96
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.21 E-value=60 Score=25.74 Aligned_cols=55 Identities=18% Similarity=0.188 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 025675 176 IIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER 230 (249)
Q Consensus 176 ~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~ 230 (249)
.+..+..+.+.++-...+-++.++.+..++|+...++....|++.+..+..+.++
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~ 58 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG 58 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3567888999999999999999998888778999999999999999998888544
No 97
>PRK02237 hypothetical protein; Provisional
Probab=61.52 E-value=7.5 Score=28.98 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=30.4
Q ss_pred chHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675 106 LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (249)
Q Consensus 106 ~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~ 149 (249)
..-+...+..+.+-++|+++. .++|..++++|+.++.+
T Consensus 68 vyI~~Sl~W~w~vdg~~Pd~~------D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 68 VYVAGSLLWLWVVDGVRPDRW------DWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHHHHHHHHHHhcCcCCChh------HHHhHHHHHHhHHHhee
Confidence 444555566778888899888 89999999999988764
No 98
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=57.73 E-value=7.8 Score=28.83 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=31.2
Q ss_pred chHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675 106 LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (249)
Q Consensus 106 ~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~ 149 (249)
..-+...+.++.+-++|+++. .++|..+|++|+.++.+
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~------D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRW------DWIGAAICLVGVAIILF 103 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChH------HHHhHHHHHHhHHheEe
Confidence 455556667788888999988 99999999999988764
No 99
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=57.61 E-value=44 Score=24.88 Aligned_cols=50 Identities=12% Similarity=-0.011 Sum_probs=30.6
Q ss_pred hhcccCchhhhhccc-chHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhh
Q 025675 91 GIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (249)
Q Consensus 91 gl~~~~a~~a~ii~~-~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~l 146 (249)
|.+.-++++--+++= ..-..-..++.++++|++++. ...|.++.+.++..
T Consensus 55 G~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n------~l~af~~i~~av~f 105 (108)
T PF04342_consen 55 GYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWN------YLWAFLCILGAVYF 105 (108)
T ss_pred hccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHH------HHHHHHHHHHhhhe
Confidence 334444444444432 222233456788999999999 88888777666543
No 100
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=49.18 E-value=1.5e+02 Score=24.44 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhcccCchhhhhcccchHHHHHHHHHHHhh
Q 025675 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120 (249)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~ 120 (249)
...+...+......++...- .+.|...+++|.+.+.
T Consensus 157 ~~~w~~~~~~~~~lp~~inp---~l~~~~~iiig~i~~~ 192 (206)
T PF06570_consen 157 MVLWIVIFVLTSFLPPVINP---VLPPWVYIIIGVIAFA 192 (206)
T ss_pred HHHHHHHHHHHHHccccCCc---CCCHHHHHHHHHHHHH
Confidence 33334444444446655332 3445555566555443
No 101
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=47.56 E-value=28 Score=30.76 Aligned_cols=67 Identities=12% Similarity=0.016 Sum_probs=46.1
Q ss_pred HHHHHHHHhhcccCchhhhhccc-chHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675 83 CVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (249)
Q Consensus 83 ~~~~~~~~gl~~~~a~~a~ii~~-~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~ 149 (249)
....+.+.|+++-+++....+.+ ..-..+++-|.++++|--+.....-..-..|+.+.+.|+.++..
T Consensus 225 ~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~ 292 (300)
T PF05653_consen 225 LQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSS 292 (300)
T ss_pred HHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeec
Confidence 34446688999999988887766 66677777788899975443211111245678888889887763
No 102
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.20 E-value=1.4e+02 Score=27.28 Aligned_cols=85 Identities=13% Similarity=0.008 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHhccCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025675 16 LEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTV-SIICKIFGLGLISCCVQTCLYVGIGY 94 (249)
Q Consensus 16 ~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~gl~~ 94 (249)
.|+.+.-+.|.+.++ ..-+.+.-..+.++-++|...+.+.--.|..+++-++ +++.. ..+=+ ++-.+.+.|.++
T Consensus 200 gWs~slY~i~ql~~n-Lq~Iwieyr~yvLgYvlivgliSfaVCYK~GPp~d~RS~~ilm-WtLql---i~lvl~Yfsvq~ 274 (452)
T KOG3817|consen 200 GWSISLYVIKQLADN-LQLIWIEYRDYVLGYVLIVGLISFAVCYKIGPPKDPRSQTILM-WTLQL---IGLVLAYFSVQH 274 (452)
T ss_pred cchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcchhhHHH-HHHHH---HHHHHHHHhccc
Confidence 478888888888776 7777777777777766633333322111223233222 22221 12222 333445689999
Q ss_pred cCchhhhhccc
Q 025675 95 SSPTLSSAIVD 105 (249)
Q Consensus 95 ~~a~~a~ii~~ 105 (249)
.+++.|.+|..
T Consensus 275 p~~a~A~iI~~ 285 (452)
T KOG3817|consen 275 PSAAIAAIIMV 285 (452)
T ss_pred HHHHHHHHHHH
Confidence 98888766654
No 103
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=37.90 E-value=1.1e+02 Score=19.71 Aligned_cols=46 Identities=24% Similarity=0.379 Sum_probs=33.5
Q ss_pred eeehHHHhhhhhhhhhhccCCcccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 025675 133 KSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREY 203 (249)
Q Consensus 133 ~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~ 203 (249)
..+|..+.++|++.+.. .+ .|.+..+++-...|......|+..++.
T Consensus 5 ~v~G~~lv~~Gii~~~l-PG------------------------pG~l~i~~GL~iLa~ef~wArr~l~~~ 50 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPL-PG------------------------PGLLVIFLGLAILATEFPWARRLLRRL 50 (53)
T ss_pred hhHHHHHHHHHHHhhcC-CC------------------------CcHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 57888899999876542 22 266777888888888888888776653
No 104
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=34.05 E-value=1.9e+02 Score=23.37 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=35.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CCchhHHHHHHHHHHHHHHHHHH
Q 025675 174 NWIIGGLVLAAGSFFLSLLYIVQTSIIRE-----YPEELMATFICCVFVTIQSTVVA 225 (249)
Q Consensus 174 ~~~~G~~~~l~aa~~~a~~~v~~k~~~~~-----~~~~~~~~~~~~~~g~i~~~~~~ 225 (249)
+..-.....+.++.+|++..++-....+| .|.|+.-..+..+.+++.+..++
T Consensus 129 ~f~qsv~~gf~a~lGfslvmvlfA~iRER~~~advP~~frG~~ialitagLmSlaFm 185 (193)
T COG4657 129 NFLQSVVYGFGAALGFSLVMVLFAAIRERLALADVPAPFRGAAIALITAGLMSLAFM 185 (193)
T ss_pred hHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHc
Confidence 34556788899999999988876665444 35556666666666666665554
No 105
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=33.88 E-value=26 Score=25.98 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675 106 LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (249)
Q Consensus 106 ~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~ 149 (249)
..-+......+..-+.++++. .+.|..+|++|+.++.+
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~------D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRY------DWIGAAICLAGVAVILF 104 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHH------HhhhHHHHHhceeeeEe
Confidence 444444555666677778877 89999999999987764
No 106
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=30.81 E-value=36 Score=26.79 Aligned_cols=29 Identities=28% Similarity=0.291 Sum_probs=22.8
Q ss_pred HhhcccCchhhhhcccchHHHHHHHHHHH
Q 025675 90 VGIGYSSPTLSSAIVDLTPAFTFILALIS 118 (249)
Q Consensus 90 ~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~ 118 (249)
+|+..-+.-.++.+.|+.|++..+++.++
T Consensus 67 iGi~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 67 LGIEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred EccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677778899999999998888766
No 107
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=24.95 E-value=47 Score=21.98 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=14.0
Q ss_pred eeehHHHhhhhhhhhhh
Q 025675 133 KSIGTMVSIAGALTVTL 149 (249)
Q Consensus 133 ~~~g~~l~~~Gv~li~~ 149 (249)
|++|+++.+.|++++.+
T Consensus 1 kiigi~Llv~GivLl~~ 17 (59)
T PF11381_consen 1 KIIGIALLVGGIVLLYF 17 (59)
T ss_pred CeeeehHHHHHHHHHHh
Confidence 57899999999988764
No 108
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=23.93 E-value=4e+02 Score=21.85 Aligned_cols=22 Identities=9% Similarity=0.194 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025675 178 GGLVLAAGSFFLSLLYIVQTSI 199 (249)
Q Consensus 178 G~~~~l~aa~~~a~~~v~~k~~ 199 (249)
+....++|++.++.+..+.||.
T Consensus 180 ~~~~iiig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 180 PWVYIIIGVIAFALRFYLKKKY 201 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666664443
No 109
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=23.32 E-value=49 Score=26.23 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=20.5
Q ss_pred HhhcccCchhhhhcccchHHHHHHHHHHH
Q 025675 90 VGIGYSSPTLSSAIVDLTPAFTFILALIS 118 (249)
Q Consensus 90 ~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~ 118 (249)
+++..-+.-.++.+.|..|++..+.+..+
T Consensus 67 v~i~e~~llkaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 67 LGIAEGSLLRSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred EecchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677888888888888877655
No 110
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=23.25 E-value=1.7e+02 Score=17.26 Aligned_cols=20 Identities=10% Similarity=-0.094 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025675 177 IGGLVLAAGSFFLSLLYIVQ 196 (249)
Q Consensus 177 ~G~~~~l~aa~~~a~~~v~~ 196 (249)
+=.+..++.+.+||.|++..
T Consensus 6 liVl~Pil~A~~Wa~fNIg~ 25 (36)
T CHL00196 6 LVIAAPVLAAASWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 44677889999999999973
No 111
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=20.43 E-value=44 Score=25.56 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=19.1
Q ss_pred hcccCchhhhhcccchHHHHHHHHHHH
Q 025675 92 IGYSSPTLSSAIVDLTPAFTFILALIS 118 (249)
Q Consensus 92 l~~~~a~~a~ii~~~~Pv~~~~ls~~~ 118 (249)
++..+.-.++.+.|..|++..+++.++
T Consensus 62 i~~~~~~~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 62 IPESSLLKAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred eccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455567888888888888877665
No 112
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=20.07 E-value=2.1e+02 Score=16.94 Aligned_cols=20 Identities=15% Similarity=-0.069 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025675 177 IGGLVLAAGSFFLSLLYIVQ 196 (249)
Q Consensus 177 ~G~~~~l~aa~~~a~~~v~~ 196 (249)
+=.+..++.+.+|+.|++..
T Consensus 6 liVl~Pil~A~gWa~fNIg~ 25 (36)
T PF06298_consen 6 LIVLLPILPAAGWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 34677888999999999984
Done!