Query 025675
Match_columns 249
No_of_seqs 119 out of 1184
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 15:10:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025675.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025675hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.5 1.1E-07 3.8E-12 73.3 5.3 69 76-150 34-104 (137)
2 3b5d_A Multidrug transporter E 98.5 7.4E-07 2.5E-11 66.1 9.2 68 76-149 34-103 (110)
3 2i68_A Protein EMRE; transmemb 8.8 5.8E+02 0.02 18.5 5.9 48 183-231 34-82 (137)
4 1q90_R Cytochrome B6-F complex 6.4 4.9E+02 0.017 15.5 3.3 18 64-81 7-24 (49)
5 2hac_A T-cell surface glycopro 6.1 2.7E+02 0.0093 15.3 1.5 17 110-126 15-31 (33)
6 3b5d_A Multidrug transporter E 5.3 7.8E+02 0.027 16.7 7.1 49 183-233 34-84 (110)
7 3h90_A Ferrous-iron efflux pum 4.0 1.4E+03 0.049 18.0 6.1 16 118-133 55-70 (283)
8 3tij_A NUPC family protein; me 3.3 1.3E+03 0.044 20.3 4.6 28 40-70 10-37 (424)
9 2wwb_B SEC61gamma, protein tra 3.3 9E+02 0.031 15.4 2.7 36 64-99 26-63 (68)
10 1rh5_B Preprotein translocase 3.2 1.1E+03 0.037 15.3 3.5 21 176-196 40-60 (74)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.51 E-value=1.1e-07 Score=73.32 Aligned_cols=69 Identities=25% Similarity=0.263 Sum_probs=52.5
Q ss_pred HHHHHH-HHHHHHHHHhhcccCchhhhhc-ccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhhc
Q 025675 76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLY 150 (249)
Q Consensus 76 ~~g~~~-~~~~~~~~~gl~~~~a~~a~ii-~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~~ 150 (249)
.++++. .+++.++..++++.+++.+..+ .++.|+++.++++++++|+++++ +++|+++.++|+.++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcC
Confidence 456666 8899999999999999999998 89999999999999999999999 999999999999988643
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.49 E-value=7.4e-07 Score=66.13 Aligned_cols=68 Identities=25% Similarity=0.267 Sum_probs=62.0
Q ss_pred HHHHHH-HHHHHHHHHhhcccCchhhhhc-ccchHHHHHHHHHHHhhcccceeeccccceeehHHHhhhhhhhhhh
Q 025675 76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (249)
Q Consensus 76 ~~g~~~-~~~~~~~~~gl~~~~a~~a~ii-~~~~Pv~~~~ls~~~~~Ek~~~~~~~s~~~~~g~~l~~~Gv~li~~ 149 (249)
..+++. ..++.++..++++.|.+.+..+ ..+.|+++.++++++++|+++++ |++|+.+.++|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 456666 8888999999999999999888 79999999999999999999999 99999999999988763
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=8.77 E-value=5.8e+02 Score=18.45 Aligned_cols=48 Identities=6% Similarity=0.016 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHH-HhhcC
Q 025675 183 AAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVAL-IAERN 231 (249)
Q Consensus 183 l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-~~~~~ 231 (249)
+++.++++++.++.-+..++.|. -.....-...+.+.....+. +++++
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~-s~ay~iw~~l~pv~~~l~g~l~lgE~ 82 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPT-GIAYAIWSGVGIVLISLLSWGFFGQR 82 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHhCCh-hHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34555566655555555666652 22222213444444444443 33443
No 4
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=6.43 E-value=4.9e+02 Score=15.52 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=13.7
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 025675 64 PPLTVSIICKIFGLGLIS 81 (249)
Q Consensus 64 ~~~~~~~~~~~~~~g~~~ 81 (249)
+..++|++...+..|..+
T Consensus 7 pdm~RRqfln~l~~G~~a 24 (49)
T 1q90_R 7 PDMNKRNIMNLILAGGAG 24 (49)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHH
Confidence 567788888887777766
No 5
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=6.09 E-value=2.7e+02 Score=15.27 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhccccee
Q 025675 110 FTFILALISRMEKLDLR 126 (249)
Q Consensus 110 ~~~~ls~~~~~Ek~~~~ 126 (249)
..+++..++.+||++..
T Consensus 15 Ygii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 15 YGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 34555666777777543
No 6
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=5.32 E-value=7.8e+02 Score=16.70 Aligned_cols=49 Identities=4% Similarity=-0.046 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHHHHHHHH-hhcCCC
Q 025675 183 AAGSFFLSLLYIVQTSIIREYPEELMAT-FICCVFVTIQSTVVALI-AERNPN 233 (249)
Q Consensus 183 l~aa~~~a~~~v~~k~~~~~~~~~~~~~-~~~~~~g~i~~~~~~~~-~~~~~~ 233 (249)
+.+.++|..+..+..+..|+.| .... ..-...+.+.....+.. ++++.+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p--~s~ay~i~~g~~~v~~~l~~~~~~~E~~s 84 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIP--TGIAYAIWSGVGIVLISLLSWGFFGQRLD 84 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC--hhhHHHHHhhHHHHHHHHHHHHHhCCCCC
Confidence 4555666666665555677765 2322 22234555555555444 344443
No 7
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=4.03 E-value=1.4e+03 Score=18.04 Aligned_cols=16 Identities=13% Similarity=-0.014 Sum_probs=8.8
Q ss_pred Hhhcccceeeccccce
Q 025675 118 SRMEKLDLRVQSSLAK 133 (249)
Q Consensus 118 ~~~Ek~~~~~~~s~~~ 133 (249)
.-+.+.+.+..|++.|
T Consensus 55 ~s~~~~d~~~pyG~~r 70 (283)
T 3h90_A 55 YSLQPADDNHSFGHGK 70 (283)
T ss_dssp HHTCCCCSSCSSCSTT
T ss_pred HhcCCCCCCCCCcchH
Confidence 3345556665566555
No 8
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter, drug transport uridine, nucleosides, membrane protein; HET: URI DMU; 2.44A {Vibrio cholerae}
Probab=3.29 E-value=1.3e+03 Score=20.35 Aligned_cols=28 Identities=14% Similarity=0.263 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhHhccCCCCCCCHHH
Q 025675 40 YSNAFAAIFILLPSTFIYYRNRTRPPLTVSI 70 (249)
Q Consensus 40 ~R~~~a~i~~ll~~~~~~~~~~~~~~~~~~~ 70 (249)
.+.+++.+. ++.+.+...+.+ ++.+||.
T Consensus 10 l~sl~Gi~v-~l~ia~l~S~nr--k~I~wr~ 37 (424)
T 3tij_A 10 FMSLIGMAV-LLGIAVLLSSNR--KAINLRT 37 (424)
T ss_dssp HHHHHHHHH-HHHHHHHHCSCG--GGCCHHH
T ss_pred HHHHHHHHH-HHHHHHHHhCCc--ccCChHH
Confidence 444455554 444444432221 3455544
No 9
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=3.27 E-value=9e+02 Score=15.35 Aligned_cols=36 Identities=11% Similarity=-0.164 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHH--HHHHHHHHHhhcccCchh
Q 025675 64 PPLTVSIICKIFGLGLIS--CCVQTCLYVGIGYSSPTL 99 (249)
Q Consensus 64 ~~~~~~~~~~~~~~g~~~--~~~~~~~~~gl~~~~a~~ 99 (249)
++.+++.+....-...+| .....-|++=+-++|..+
T Consensus 26 ~KPdr~Ef~~iak~~~iG~~i~G~IGf~IklI~ipinn 63 (68)
T 2wwb_B 26 TKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINN 63 (68)
T ss_dssp CCCCTHHHHHHHHHSSHHHHHHHHHHHHHHHHHGGGTS
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 10
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=3.25 E-value=1.1e+03 Score=15.25 Aligned_cols=21 Identities=5% Similarity=-0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025675 176 IIGGLVLAAGSFFLSLLYIVQ 196 (249)
Q Consensus 176 ~~G~~~~l~aa~~~a~~~v~~ 196 (249)
..|..++++|.++|.++.+..
T Consensus 40 ~~~iG~~imG~IGfiIkli~i 60 (74)
T 1rh5_B 40 VTALGISLLGIIGYIIHVPAT 60 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Done!