Query 025675
Match_columns 249
No_of_seqs 119 out of 1184
Neff 8.1
Searched_HMMs 13730
Date Mon Mar 25 15:10:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025675.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025675hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 31.2 27 0.002 16.7 2.8 19 176-194 2-20 (27)
2 d1q90r_ f.23.12.1 (R:) ISP sub 5.5 2.4E+02 0.017 14.7 3.3 18 64-81 5-22 (39)
3 d1l7va_ f.22.1.1 (A:) ABC tran 3.1 8.2E+02 0.06 18.3 5.3 21 133-153 64-84 (324)
4 d1gl4a1 d.22.1.2 (A:399-631) D 3.0 2.7E+02 0.019 20.6 1.8 36 90-126 43-78 (233)
5 d1rh5b_ f.23.28.1 (B:) Preprot 2.4 5.7E+02 0.042 14.2 3.2 20 176-195 29-48 (56)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 2.3 4.9E+02 0.036 13.0 3.5 19 175-193 17-35 (37)
7 d1jb0l_ f.31.1.1 (L:) Photosys 2.2 8.5E+02 0.062 16.3 3.6 22 176-197 77-98 (151)
8 d1otsa_ f.20.1.1 (A:) Clc chlo 2.2 1.3E+03 0.093 17.6 9.6 21 177-197 242-262 (444)
9 d1pv7a_ f.38.1.2 (A:) Lactose 2.0 1.1E+03 0.079 16.3 6.7 16 32-47 286-301 (417)
10 d1q90a3 f.23.23.1 (A:248-292) 1.6 7.6E+02 0.055 12.9 4.1 29 175-203 4-32 (45)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=31.22 E-value=27 Score=16.68 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025675 176 IIGGLVLAAGSFFLSLLYI 194 (249)
Q Consensus 176 ~~G~~~~l~aa~~~a~~~v 194 (249)
.+|.+.+-++.++||.|.-
T Consensus 2 vlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 3688888899999988754
No 2
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.48 E-value=2.4e+02 Score=14.73 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=13.5
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 025675 64 PPLTVSIICKIFGLGLIS 81 (249)
Q Consensus 64 ~~~~~~~~~~~~~~g~~~ 81 (249)
+.+.+|++..++..|-+.
T Consensus 5 pDMgrR~~MNLll~G~~~ 22 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAG 22 (39)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccc
Confidence 566778888888887765
No 3
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=3.12 E-value=8.2e+02 Score=18.30 Aligned_cols=21 Identities=29% Similarity=0.651 Sum_probs=16.6
Q ss_pred eeehHHHhhhhhhhhhhccCC
Q 025675 133 KSIGTMVSIAGALTVTLYKGP 153 (249)
Q Consensus 133 ~~~g~~l~~~Gv~li~~~~~~ 153 (249)
-.+|..++++|+++-...++|
T Consensus 64 ~l~Ga~La~sG~~lQ~~~rNp 84 (324)
T d1l7va_ 64 LLVGAALAISGAVMQALFENP 84 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 568889999999877766665
No 4
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.95 E-value=2.7e+02 Score=20.65 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=29.2
Q ss_pred HhhcccCchhhhhcccchHHHHHHHHHHHhhccccee
Q 025675 90 VGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLR 126 (249)
Q Consensus 90 ~gl~~~~a~~a~ii~~~~Pv~~~~ls~~~~~Ek~~~~ 126 (249)
.++..+|+.....+.-+.|+... ++|+|-+|.-...
T Consensus 43 taIs~IP~~~G~~L~~L~~ig~~-igWlFA~e~~~a~ 78 (233)
T d1gl4a1 43 TAISTIPETVGYSLLPLAPIGGI-IGWMFAVEQDGFK 78 (233)
T ss_dssp EEEESCCHHHHGGGTTCTHHHHH-HHHHTCEECTTCC
T ss_pred EEccCCChhHhhhhhhhhhhcCc-eeeeEEeecCCcc
Confidence 45778888999999999988864 5999999887655
No 5
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.44 E-value=5.7e+02 Score=14.20 Aligned_cols=20 Identities=5% Similarity=-0.182 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025675 176 IIGGLVLAAGSFFLSLLYIV 195 (249)
Q Consensus 176 ~~G~~~~l~aa~~~a~~~v~ 195 (249)
.-|..+++.+.++|..+.+.
T Consensus 29 v~~iG~~i~G~IGf~I~li~ 48 (56)
T d1rh5b_ 29 VTALGISLLGIIGYIIHVPA 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888765
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.29 E-value=4.9e+02 Score=13.01 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 025675 175 WIIGGLVLAAGSFFLSLLY 193 (249)
Q Consensus 175 ~~~G~~~~l~aa~~~a~~~ 193 (249)
--+|.++.+.-++.++.|.
T Consensus 17 Ly~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 17 LYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3578888888888777764
No 7
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=2.22 E-value=8.5e+02 Score=16.32 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025675 176 IIGGLVLAAGSFFLSLLYIVQT 197 (249)
Q Consensus 176 ~~G~~~~l~aa~~~a~~~v~~k 197 (249)
.-++.++++.+.+.++|...+.
T Consensus 77 lsaiglv~Ilt~~L~lYg~~sf 98 (151)
T d1jb0l_ 77 ISGIALILVATACLAAYGLVSF 98 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccccC
Confidence 3345666777788888887754
No 8
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=2.18 E-value=1.3e+03 Score=17.64 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025675 177 IGGLVLAAGSFFLSLLYIVQT 197 (249)
Q Consensus 177 ~G~~~~l~aa~~~a~~~v~~k 197 (249)
.|.++.+.++++--......|
T Consensus 242 lgi~~g~~g~~f~~~~~~~~~ 262 (444)
T d1otsa_ 242 LGIIFGIFGPIFNKWVLGMQD 262 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555444443333333
No 9
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=2.01 E-value=1.1e+03 Score=16.29 Aligned_cols=16 Identities=0% Similarity=0.094 Sum_probs=6.8
Q ss_pred CChHHHHHHHHHHHHH
Q 025675 32 TSDFVLIVYSNAFAAI 47 (249)
Q Consensus 32 ~~p~~~~~~R~~~a~i 47 (249)
.++......-....++
T Consensus 286 ~~~~~~~~~~~~~~~~ 301 (417)
T d1pv7a_ 286 IGGKNALLLAGTIMSV 301 (417)
T ss_dssp HCHHHHHHHHHHHHHH
T ss_pred cccccchhhhHHHHHH
Confidence 4444444444433333
No 10
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.56 E-value=7.6e+02 Score=12.94 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 025675 175 WIIGGLVLAAGSFFLSLLYIVQTSIIREY 203 (249)
Q Consensus 175 ~~~G~~~~l~aa~~~a~~~v~~k~~~~~~ 203 (249)
...|.+..+.+.+.--+..++-||.-++.
T Consensus 4 Rv~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 4 RIQGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777677778777766654
Done!