BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025676
(249 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23715|PSA3_ARATH Proteasome subunit alpha type-3 OS=Arabidopsis thaliana GN=PAG1
PE=1 SV=2
Length = 249
Score = 478 bits (1231), Expect = e-134, Method: Compositional matrix adjust.
Identities = 225/249 (90%), Positives = 241/249 (96%)
Query: 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMML 60
MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTV+GIKCKDGIVMGVEKLIASKMML
Sbjct: 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMML 60
Query: 61 PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYV 120
PGSNRRIHSVHRH+GMAVAGLAADGRQIV RAKSEA +YESVYG+ +PVKEL++RVASYV
Sbjct: 61 PGSNRRIHSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYV 120
Query: 121 HLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLK 180
HLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKG+QAAKTEIEKL
Sbjct: 121 HLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGKQAAKTEIEKLN 180
Query: 181 LSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAAR 240
LSEMTC++GVIEVAKIIY +HDEAKDKAFELEMSW+C+ES R+HQKVPD+LLEEAK AA+
Sbjct: 181 LSEMTCKEGVIEVAKIIYKLHDEAKDKAFELEMSWICEESKREHQKVPDDLLEEAKTAAK 240
Query: 241 AALEEMDAD 249
ALEEMDAD
Sbjct: 241 TALEEMDAD 249
>sp|O24362|PSA3_SPIOL Proteasome subunit alpha type-3 OS=Spinacia oleracea GN=PAG1 PE=2
SV=1
Length = 249
Score = 473 bits (1216), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/249 (92%), Positives = 240/249 (96%)
Query: 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMML 60
MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGT +GIKCKDGIV+GVEKLI SKMML
Sbjct: 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTAVGIKCKDGIVLGVEKLIQSKMML 60
Query: 61 PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYV 120
PGSNRRIHSVHRHSGMAVAGLAADGRQIV RAKSEATNYESVYGE +PVKELA RVASYV
Sbjct: 61 PGSNRRIHSVHRHSGMAVAGLAADGRQIVARAKSEATNYESVYGEAVPVKELADRVASYV 120
Query: 121 HLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLK 180
HLCTLYWWLRPFGCGVILGGYDRDGPQLYM+EPSGISYRYFGAAIGKG+QAAKTEIEKLK
Sbjct: 121 HLCTLYWWLRPFGCGVILGGYDRDGPQLYMVEPSGISYRYFGAAIGKGKQAAKTEIEKLK 180
Query: 181 LSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAAR 240
LSEMTCR+G+IEVAKIIY VHDEAKDKAFELEMSW+CDES R+HQKVPD LL+EAKAAA
Sbjct: 181 LSEMTCREGIIEVAKIIYKVHDEAKDKAFELEMSWICDESKREHQKVPDNLLQEAKAAAT 240
Query: 241 AALEEMDAD 249
AALEEMDAD
Sbjct: 241 AALEEMDAD 249
>sp|Q9LSU0|PSA3_ORYSJ Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica
GN=PAG1 PE=2 SV=1
Length = 249
Score = 472 bits (1215), Expect = e-133, Method: Compositional matrix adjust.
Identities = 220/249 (88%), Positives = 239/249 (95%)
Query: 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMML 60
MSSIGTGYDLSVTTFSPDGRVFQ+EYA KAVDNSGTV+GIKCKDGIV+GVEKL+ SKMML
Sbjct: 1 MSSIGTGYDLSVTTFSPDGRVFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMML 60
Query: 61 PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYV 120
GSNRRIHSVH HSG+AVAGLAADGRQIV+RAKSEA +YE VYGEPI VKELA RVASYV
Sbjct: 61 EGSNRRIHSVHWHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYV 120
Query: 121 HLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLK 180
HLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSG+SY+YFGAA+GKGRQAAKTEIEKLK
Sbjct: 121 HLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIEKLK 180
Query: 181 LSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAAR 240
LSE+TCR+G++EVAKIIYGVHDEAKDKAFELE+SW+CDESNRQHQKVP +LLE+AK AA+
Sbjct: 181 LSELTCREGIVEVAKIIYGVHDEAKDKAFELELSWICDESNRQHQKVPADLLEQAKVAAQ 240
Query: 241 AALEEMDAD 249
AALEEMDAD
Sbjct: 241 AALEEMDAD 249
>sp|P90513|PSA3_ACACA Proteasome subunit alpha type-3 (Fragment) OS=Acanthamoeba
castellanii PE=2 SV=1
Length = 252
Score = 338 bits (866), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 158/241 (65%), Positives = 198/241 (82%)
Query: 3 SIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPG 62
SIGTGYDLS TTFSPDGRVFQ+EYAAKAVDNSGT +G++ KDG+V+ VEKL+ SKM++P
Sbjct: 1 SIGTGYDLSSTTFSPDGRVFQVEYAAKAVDNSGTALGLRVKDGVVLAVEKLLVSKMLVPN 60
Query: 63 SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHL 122
+NRRIH+V RH G+A++GL ADGRQ+V+R ++EAT+Y YG I K L +R++++V L
Sbjct: 61 TNRRIHTVDRHCGLAMSGLVADGRQLVSRGRAEATSYREFYGTDISGKVLNERLSNFVQL 120
Query: 123 CTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLS 182
+LY +RPFG VILG D++GPQLYMIEPSGIS+ YFG AIGKG +AAKTEIEKLKLS
Sbjct: 121 YSLYGSVRPFGTSVILGCVDKNGPQLYMIEPSGISWGYFGVAIGKGARAAKTEIEKLKLS 180
Query: 183 EMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAA 242
EMT R+ + E AKIIY VHD+AKDKAFELE+SWVC+E+ H+ VP +LLEEA+ A+ A
Sbjct: 181 EMTAREAIKEAAKIIYSVHDDAKDKAFELELSWVCEETGNLHKFVPKDLLEEAEKYAKQA 240
Query: 243 L 243
L
Sbjct: 241 L 241
>sp|Q27563|PSA3_DICDI Proteasome subunit alpha type-3 OS=Dictyostelium discoideum
GN=psmA3 PE=2 SV=2
Length = 248
Score = 332 bits (852), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 146/247 (59%), Positives = 199/247 (80%)
Query: 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMML 60
MSS+G+GYDL V+T+SPDG++FQ++YA KAV+NSGT++ IK KDG+V+GVEKL+ SKM+
Sbjct: 1 MSSVGSGYDLYVSTYSPDGKLFQVDYANKAVENSGTLVAIKAKDGVVLGVEKLVPSKMLC 60
Query: 61 PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYV 120
GSNRR+H + H G+A+AG AD RQ++TRA+SEA NY+S YG+PIP+K L+QR+ASY
Sbjct: 61 SGSNRRVHHIDTHVGVAIAGFLADARQLITRARSEAKNYKSTYGQPIPIKVLSQRIASYN 120
Query: 121 HLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLK 180
H+ TLY +RPFGC + + G D+ GPQL+++EPSG YFGA++GKG+QAAK E+EK+K
Sbjct: 121 HMHTLYGSVRPFGCSIAITGIDQYGPQLFLVEPSGSCVGYFGASLGKGKQAAKNELEKIK 180
Query: 181 LSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAAR 240
SEMTCR+ + EV++IIY VHDE KDK FELE+ W+ E+N HQ VP EL +EA+A A+
Sbjct: 181 FSEMTCREAIKEVSRIIYSVHDEVKDKDFELELGWISTETNNVHQIVPKELHDEAEAYAK 240
Query: 241 AALEEMD 247
+LE+ +
Sbjct: 241 QSLEDAN 247
>sp|P25788|PSA3_HUMAN Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2
Length = 255
Score = 322 bits (825), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 158/248 (63%), Positives = 192/248 (77%), Gaps = 1/248 (0%)
Query: 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMML 60
MSSIGTGYDLS +TFSPDGRVFQ+EYA KAV+NS T IGI+CKDG+V GVEKL+ SK+
Sbjct: 1 MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYE 60
Query: 61 PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYV 120
GSN+R+ +V RH GMAVAGL AD R + A+ EA+N+ S +G IP+K LA RVA YV
Sbjct: 61 EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYV 120
Query: 121 HLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKL 179
H TLY +RPFGC +LG Y DG QLYMI+PSG+SY Y+G AIGK RQAAKTEIEKL
Sbjct: 121 HAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKL 180
Query: 180 KLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAA 239
++ EMTCR V EVAKIIY VHDE KDKAFELE+SWV + +N +H+ VP ++ EEA+ A
Sbjct: 181 QMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYA 240
Query: 240 RAALEEMD 247
+ +L+E D
Sbjct: 241 KESLKEED 248
>sp|Q58DU5|PSA3_BOVIN Proteasome subunit alpha type-3 OS=Bos taurus GN=PSMA3 PE=1 SV=3
Length = 255
Score = 322 bits (824), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 158/248 (63%), Positives = 192/248 (77%), Gaps = 1/248 (0%)
Query: 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMML 60
MSSIGTGYDLS +TFSPDGRVFQ+EYA KAV+NS T IGI+CKDG+V GVEKL+ SK+
Sbjct: 1 MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYE 60
Query: 61 PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYV 120
GSN+R+ +V RH GMAVAGL AD R + A+ EA+N+ S +G IP+K LA RVA YV
Sbjct: 61 EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYV 120
Query: 121 HLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKL 179
H TLY +RPFGC +LG Y DG QLYMI+PSG+SY Y+G AIGK RQAAKTEIEKL
Sbjct: 121 HAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKL 180
Query: 180 KLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAA 239
++ EMTCR V EVAKIIY VHDE KDKAFELE+SWV + +N +H+ VP ++ EEA+ A
Sbjct: 181 QMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGEITNGRHEIVPKDVREEAEKYA 240
Query: 240 RAALEEMD 247
+ +L+E D
Sbjct: 241 KESLKEED 248
>sp|O70435|PSA3_MOUSE Proteasome subunit alpha type-3 OS=Mus musculus GN=Psma3 PE=1 SV=3
Length = 255
Score = 320 bits (819), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 157/248 (63%), Positives = 191/248 (77%), Gaps = 1/248 (0%)
Query: 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMML 60
MSSIGTGYDLS +TFSPDGRVFQ+EYA KAV+NS T IGI+CKDG+V GVEKL+ SK+
Sbjct: 1 MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYE 60
Query: 61 PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYV 120
GSN+R+ +V RH GMAVAGL AD R + A+ EA+N+ S +G IP+K LA RVA YV
Sbjct: 61 EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYV 120
Query: 121 HLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKL 179
H TLY +RPFGC +LG Y DG QLYMI+PSG+SY Y+G AIGK RQAAKTEIEKL
Sbjct: 121 HAYTLYSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKL 180
Query: 180 KLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAA 239
++ EMTCR V EVAKIIY VHDE KDKAFELE+SWV + + +H+ VP ++ EEA+ A
Sbjct: 181 QMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGELTKGRHEIVPKDIREEAEKYA 240
Query: 240 RAALEEMD 247
+ +L+E D
Sbjct: 241 KESLKEED 248
>sp|P18422|PSA3_RAT Proteasome subunit alpha type-3 OS=Rattus norvegicus GN=Psma3 PE=1
SV=3
Length = 255
Score = 319 bits (818), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 157/248 (63%), Positives = 191/248 (77%), Gaps = 1/248 (0%)
Query: 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMML 60
MSSIGTGYDLS +TFSPDGRVFQ+EYA KAV+NS T IGI+CKDG+V GVEKL+ SK+
Sbjct: 1 MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYE 60
Query: 61 PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYV 120
GSN+R+ +V RH GMAVAGL AD R + A+ EA+N+ S +G IP+K LA RVA YV
Sbjct: 61 EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYV 120
Query: 121 HLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKL 179
H TLY +RPFGC +LG Y DG QLYMI+PSG+SY Y+G AIGK RQAAKTEIEKL
Sbjct: 121 HAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKL 180
Query: 180 KLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAA 239
++ EMTCR V EVAKIIY VHDE KDKAFELE+SWV + + +H+ VP ++ EEA+ A
Sbjct: 181 QMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGELTKGRHEIVPKDVREEAEKYA 240
Query: 240 RAALEEMD 247
+ +L+E D
Sbjct: 241 KESLKEED 248
>sp|O59770|PSA7_SCHPO Probable proteasome subunit alpha type-7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pre10 PE=1 SV=1
Length = 253
Score = 263 bits (672), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 1/240 (0%)
Query: 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMML 60
MSSIGTGYDL + FSPDGR+FQ EYA KAV+N+ T IGIKC+DG+++ +EK++ SK++
Sbjct: 1 MSSIGTGYDLGLF-FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLK 59
Query: 61 PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYV 120
P N RI SV RH G+A G DG+ IV RA+ EAT++ YG PIP +A R+ +YV
Sbjct: 60 PRVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYV 119
Query: 121 HLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLK 180
L T Y +RPFG + YD +GP LYM+EP+G+ + Y GAA GKGRQ A+ E+EKL
Sbjct: 120 QLFTCYSSVRPFGVMSFVATYDSEGPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKLN 179
Query: 181 LSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAAR 240
S + + V E A+I+Y HDE +K E+EM+WV E+N H VPDELL+EA+A AR
Sbjct: 180 FSSLKMKDAVKEAARILYATHDEENNKEHEIEMTWVGVETNGIHTPVPDELLQEAEAYAR 239
>sp|Q9V5C6|PSA3_DROME Proteasome subunit alpha type-3 OS=Drosophila melanogaster
GN=Prosalpha7 PE=1 SV=1
Length = 253
Score = 250 bits (638), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 131/250 (52%), Positives = 168/250 (67%), Gaps = 2/250 (0%)
Query: 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMML 60
MS+IGTGYDLS + FSPDGRVFQI+YA+KAV+ SGTVIGI+ KD +V+ VEK+I SK+
Sbjct: 1 MSTIGTGYDLSASQFSPDGRVFQIDYASKAVEKSGTVIGIRGKDAVVLAVEKIITSKLYE 60
Query: 61 PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYV 120
P + RI ++ ++ GMAVAGL ADG + A+ EA NY + + IP+K L RVA YV
Sbjct: 61 PDAGGRIFTIEKNIGMAVAGLVADGNFVADIARQEAANYRQQFEQAIPLKHLCHRVAGYV 120
Query: 121 HLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKL 179
H TLY +RPFG +IL +D +GPQLY IEPSG S+ YF A GK +Q AKTE+EKL
Sbjct: 121 HAYTLYSAVRPFGLSIILASWDEVEGPQLYKIEPSGSSFGYFACASGKAKQLAKTEMEKL 180
Query: 180 KLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAA 239
K+ +M + V +IIY VHDE KDK F EM V + H P EL E+A+ A
Sbjct: 181 KM-DMRTDELVESAGEIIYKVHDELKDKDFRFEMGLVGRVTGGLHLINPSELTEKARKAG 239
Query: 240 RAALEEMDAD 249
AA ++ D+D
Sbjct: 240 DAANKDEDSD 249
>sp|P21242|PSA7_YEAST Probable proteasome subunit alpha type-7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PRE10 PE=1
SV=2
Length = 288
Score = 248 bits (633), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 123/239 (51%), Positives = 160/239 (66%), Gaps = 4/239 (1%)
Query: 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMML 60
M+SIGTGYDLS + FSPDGR FQ+EYA KAV+N T IGIKC DG+V VEKLI SK+++
Sbjct: 1 MTSIGTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLV 60
Query: 61 PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYV 120
P N +I V RH G +GL DGR +V R + EA +++ +Y PIP+ A R+ YV
Sbjct: 61 PQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYV 120
Query: 121 HLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKL- 179
TLY +RPFG I GG D++G LYM+EPSG + Y GAA GKGRQ+AK E+EKL
Sbjct: 121 QAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLV 180
Query: 180 --KLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVC-DESNRQHQKVPDELLEEA 235
++ R+ V + AKIIY H++ K+K FELE+SW E+N H+ V +LL+EA
Sbjct: 181 DHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEA 239
>sp|Q09583|PSA3_CAEEL Proteasome subunit alpha type-3 OS=Caenorhabditis elegans GN=pas-7
PE=1 SV=3
Length = 250
Score = 232 bits (591), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 171/250 (68%), Gaps = 2/250 (0%)
Query: 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMML 60
MSSIGTGYDL+ +TFSPDGR+FQ+EYA KAVDN+GT+I I+ K+G+V+ +KLI+SK+
Sbjct: 1 MSSIGTGYDLAASTFSPDGRIFQVEYAQKAVDNAGTMIAIRGKNGVVVVADKLISSKLYT 60
Query: 61 PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYV 120
+N R+ +V+ + G+AVAG DG + A EA + Y EP+P++ +A VA Y+
Sbjct: 61 DNANPRMFNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYI 120
Query: 121 HLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKL 179
H+ TL RPFG G +++ G +L+++EPSG++Y Y A+GK RQAAK EIEKL
Sbjct: 121 HIHTLG-ISRPFGAGAFFMSWNKQTGGRLFLVEPSGLNYEYKAWAVGKHRQAAKAEIEKL 179
Query: 180 KLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAA 239
K+ E+ Q V E A+II V DE KDK ++EM WV +++N ++++VP E++ A+ A
Sbjct: 180 KIEELDVNQLVKEAARIIMVVRDENKDKNVQIEMGWVGEQTNGKYEEVPSEVVTAAEEWA 239
Query: 240 RAALEEMDAD 249
A L+E D D
Sbjct: 240 IAKLDEDDMD 249
>sp|C6A459|PSA_THESM Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 /
DSM 12597) GN=psmA PE=3 SV=1
Length = 260
Score = 156 bits (394), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 134/233 (57%), Gaps = 8/233 (3%)
Query: 7 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRR 66
GYD ++T FSPDGR+FQ++YA +AV T +G+KCKDG+V+ VEK + SK++ P S +
Sbjct: 9 GYDRAITVFSPDGRLFQVQYAREAVKRGATAVGVKCKDGVVLAVEKRVTSKLIEPESYEK 68
Query: 67 IHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 126
I + H A +G+ AD R +V RA+ EA Y YGEP+P+ L +++ + T Y
Sbjct: 69 IFQIDDHIAAASSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQMHTQY 128
Query: 127 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 186
+RPFG +++ G + + P+L+ +PSG + + AIG GR A E+ EMT
Sbjct: 129 GGVRPFGAALLMAGVN-EKPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEKYRDEMTL 187
Query: 187 RQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKV-PDEL---LEEA 235
+ + + + +E ++ E+ + V ++ +K+ P+E+ LEEA
Sbjct: 188 EEAIKLAVLALSKIMEEPSPESIEVAVISV---KEKKFKKITPEEVAKCLEEA 237
>sp|Q8TYB7|PSA_METKA Proteasome subunit alpha OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=psmA PE=3 SV=1
Length = 246
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 132/229 (57%), Gaps = 2/229 (0%)
Query: 6 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNR 65
T YD ++T FSPDGR+FQ+EYA +AV T +GIK ++G+V+GV+K + SK++ P S
Sbjct: 8 TAYDRAITVFSPDGRLFQVEYAREAVKRGTTALGIKVEEGVVLGVDKRVTSKLIEPESIE 67
Query: 66 RIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTL 125
+++ + H G A AGL AD R +V RA+ EA Y YGEPI V L + + + T
Sbjct: 68 KVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVYTQ 127
Query: 126 YWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMT 185
+ +RPFG +++ G D G +L+ +PSG + AIG+GRQ A E+ +MT
Sbjct: 128 HGGVRPFGTALLIAGVDTKGCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYREDMT 187
Query: 186 CRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQ-HQKVPDELLE 233
++ + + +Y E + A LE++ V + R+ +K +E+ E
Sbjct: 188 LQEAIELAVRALYEASRE-ETTADNLEIAVVDKQGFRKLERKKIEEMFE 235
>sp|O26782|PSA_METTH Proteasome subunit alpha OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=psmA PE=3 SV=1
Length = 248
Score = 154 bits (388), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 130/224 (58%), Gaps = 2/224 (0%)
Query: 7 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRR 66
GYD ++T FSPDGR+FQ+EYA +AV T +G+K K+GIV+ V+K SK++ P S +
Sbjct: 8 GYDRAITVFSPDGRLFQVEYAREAVKRGTTSLGVKSKEGIVLVVDKRPTSKLVEPKSIEK 67
Query: 67 IHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 126
I + H G A +GL AD R I+ +A+ EA Y EPI V+ LA+++ + T +
Sbjct: 68 IFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYTQH 127
Query: 127 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 186
+RPFG +I+GG + G +L+ +PSG Y AIG GR AA E EK +M
Sbjct: 128 GGVRPFGTALIIGGVNGRGCRLFETDPSGALIEYKATAIGAGRPAAMEEFEKKYSDDMNL 187
Query: 187 RQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDE 230
Q + +Y E K +E++ V + ++++++++PD+
Sbjct: 188 NQAIELALDAVYEAT-EGKTTPESVEIA-VIEAADKKYRRLPDD 229
>sp|Q9V122|PSA_PYRAB Proteasome subunit alpha OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=psmA PE=3 SV=1
Length = 260
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 108/184 (58%), Gaps = 1/184 (0%)
Query: 7 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRR 66
GYD ++T FSPDGR+FQ+ YA +AV T +G+KCKDG+V+ VEK I S+++ P S +
Sbjct: 9 GYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCKDGVVLAVEKRITSRLIEPESYEK 68
Query: 67 IHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 126
I + H A +G+ AD R +V RA+ EA + YGEP P+ + +++ + T Y
Sbjct: 69 IFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQY 128
Query: 127 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 186
+RPFG +++ G + D P+LY +PSG + + AIG GR A E +MT
Sbjct: 129 GGVRPFGAALLMAGVN-DKPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEDKYRDDMTL 187
Query: 187 RQGV 190
+ +
Sbjct: 188 DEAI 191
>sp|Q9UT97|PSA5_SCHPO Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pup2 PE=1 SV=1
Length = 247
Score = 147 bits (371), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 113/211 (53%), Gaps = 18/211 (8%)
Query: 8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRI 67
YD V TFSP+GR+FQ+EYA +A+ T IG+K KD +V+GVEK + S +M S ++
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKL 67
Query: 68 HSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 127
+ H G A++GL AD R I+ A+ + N+ Y EP ++ Q + C L
Sbjct: 68 FEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSI------CDLAL 121
Query: 128 WL------------RPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTE 175
RPFG +++ G D GPQLY EPSG +RY AIG G + AK+E
Sbjct: 122 RFGEGEDGEERIMSRPFGVALLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSE 181
Query: 176 IEKLKLSEMTCRQGVIEVAKIIYGVHDEAKD 206
+ K +MT + + + K++ V +E D
Sbjct: 182 LVKEFHKDMTLEEAEVLILKVLRQVMEEKLD 212
>sp|O29760|PSA_ARCFU Proteasome subunit alpha OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=psmA PE=1 SV=1
Length = 246
Score = 147 bits (370), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 127/225 (56%), Gaps = 2/225 (0%)
Query: 7 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRR 66
GYD ++T FSPDGR+FQ+EYA +AV T IGIKCK+G+++ +K + SK++ + +
Sbjct: 7 GYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEK 66
Query: 67 IHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 126
I+ + H A +GL AD R ++ RA+ EA Y EPI VKELA+++ + T Y
Sbjct: 67 IYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQY 126
Query: 127 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 186
+RPFG +++ G D + P+LY +PSG Y AIG GR A EK +++
Sbjct: 127 GGVRPFGVSLLIAGVD-EVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSF 185
Query: 187 RQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDEL 231
++ + + G+ E++ +E+ +V + + P+EL
Sbjct: 186 DDAMV-LGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEEL 229
>sp|Q8U0L6|PSA_PYRFU Proteasome subunit alpha OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=psmA PE=3 SV=1
Length = 260
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 106/184 (57%), Gaps = 1/184 (0%)
Query: 7 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRR 66
GYD ++T FSPDGR+FQ+ YA +AV T +G+KC +G+V+ VEK I S+++ P S +
Sbjct: 9 GYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCGEGVVLAVEKRITSRLIEPDSYEK 68
Query: 67 IHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 126
I + H A +G+ AD R +V RA+ EA Y YGEP PV + +++ + T Y
Sbjct: 69 IFQIDDHIAAASSGIIADARVLVNRARLEAQIYRLTYGEPAPVSVIVKKICDLKQMHTQY 128
Query: 127 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 186
+RPFG +++ G + D P+LY +PSG + + AIG GR A E+ +M
Sbjct: 129 GGVRPFGAALLMAGIN-DRPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMNL 187
Query: 187 RQGV 190
+
Sbjct: 188 EDAI 191
>sp|B6YSH9|PSA_THEON Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1)
GN=psmA PE=3 SV=1
Length = 260
Score = 145 bits (365), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 101/166 (60%), Gaps = 1/166 (0%)
Query: 7 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRR 66
GYD ++T FSPDGR+FQ+ YA +AV T +G+K K+G+V+ VEK I SK++ P S +
Sbjct: 9 GYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKEGVVLAVEKRITSKLIEPSSYEK 68
Query: 67 IHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 126
I + H A +G+ AD R +V RA+ EA Y YGEP+P+ L +++ T Y
Sbjct: 69 IFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPVPLTVLVKKICDLKQAHTQY 128
Query: 127 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAA 172
+RPFG +++ G + D P+LY +PSG + + AIG GR A
Sbjct: 129 GGVRPFGAALLMAGVN-DKPELYETDPSGAYFEWRAVAIGSGRNTA 173
>sp|O59219|PSA_PYRHO Proteasome subunit alpha OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=psmA PE=3 SV=1
Length = 260
Score = 144 bits (362), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 108/184 (58%), Gaps = 1/184 (0%)
Query: 7 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRR 66
GYD ++T FSPDGR+FQ+ YA +AV T +G+KC +G+V+ VEK I S+++ P S +
Sbjct: 9 GYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCNEGVVLAVEKRITSRLIEPESYEK 68
Query: 67 IHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 126
I + H A +G+ AD R +V RA+ EA + YGEP P+ + +++ + T Y
Sbjct: 69 IFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQY 128
Query: 127 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 186
+RPFG +++ G + + P+LY +PSG + + AIG GR A E+ +M+
Sbjct: 129 GGVRPFGAALLMAGVN-EKPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYKDDMSL 187
Query: 187 RQGV 190
+ +
Sbjct: 188 EEAI 191
>sp|Q469M6|PSA_METBF Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=psmA PE=3 SV=1
Length = 249
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 127/230 (55%), Gaps = 11/230 (4%)
Query: 7 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRR 66
GYD ++T FSPDGR+FQ+EYA +AV T +GIK DG+V+ V+K I S+++ S +
Sbjct: 8 GYDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEK 67
Query: 67 IHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 126
I + H G A +GL AD R +V RA+ EA Y EPI V+ +++++ + T Y
Sbjct: 68 IFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQY 127
Query: 127 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 186
+RP+G +++ G D + P+L+ +PSG Y AIG GR A +++ E
Sbjct: 128 GGVRPYGTALLIAGVDDNLPRLFETDPSGALLEYKATAIGAGRNAV------VEVFEAEY 181
Query: 187 RQGVIEVAKIIYGVH-----DEAKDKAFELEMSWVCDESNRQHQKVPDEL 231
RQ + A I+ G+ E K A LE+ V + + + VP+E+
Sbjct: 182 RQDMNMDAAILLGMDALYRAAEGKFDASTLEVGIVSLQDKKFRKLVPEEV 231
>sp|O24733|PSA_THEK1 Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA
PE=3 SV=1
Length = 260
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 101/166 (60%), Gaps = 1/166 (0%)
Query: 7 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRR 66
GYD ++T FSPDGR+FQ+ YA +AV T +G+K KDG+V+ VEK I SK++ P S +
Sbjct: 9 GYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPSSYEK 68
Query: 67 IHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 126
I + H A +G+ AD R +V RA+ EA Y YGEP+P+ L +++ T Y
Sbjct: 69 IFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQY 128
Query: 127 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAA 172
+RPFG +++ G + + P+L+ +PSG + + AIG GR A
Sbjct: 129 GGVRPFGAALLMAGVN-EKPELFETDPSGAYFEWKAVAIGSGRNTA 173
>sp|Q5JIU9|PSA_PYRKO Proteasome subunit alpha OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=psmA PE=3 SV=1
Length = 260
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 101/166 (60%), Gaps = 1/166 (0%)
Query: 7 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRR 66
GYD ++T FSPDGR+FQ+ YA +AV T +G+K KDG+V+ VEK I SK++ P S +
Sbjct: 9 GYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPSSYEK 68
Query: 67 IHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 126
I + H A +G+ AD R +V RA+ EA Y YGEP+P+ L +++ T Y
Sbjct: 69 IFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQY 128
Query: 127 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAA 172
+RPFG +++ G + + P+L+ +PSG + + AIG GR A
Sbjct: 129 GGVRPFGAALLMAGVN-EKPELFETDPSGAYFEWKAVAIGSGRNTA 173
>sp|Q9LSU1|PSA5_ORYSJ Proteasome subunit alpha type-5 OS=Oryza sativa subsp. japonica
GN=PAE1 PE=2 SV=1
Length = 237
Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 113/207 (54%), Gaps = 15/207 (7%)
Query: 6 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNR 65
T YD V TFSP+GR+FQ+EYA +A+ T IG+K KDG+V+ VEK + S ++ P S
Sbjct: 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVE 65
Query: 66 RIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTL 125
+I + H G A++GL AD R +V A+ E N+ YGEP+ V+ Q + C L
Sbjct: 66 KIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAI------CDL 119
Query: 126 YWWL---------RPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEI 176
RPFG +++ G+D +GP LY +PSG ++ AIG G + A + +
Sbjct: 120 ALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSL 179
Query: 177 EKLKLSEMTCRQGVIEVAKIIYGVHDE 203
++ E+T ++ I+ V +E
Sbjct: 180 QEQYNKELTLQEAETIALSILKQVMEE 206
>sp|Q8TPX5|PSA_METAC Proteasome subunit alpha OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=psmA PE=3 SV=1
Length = 247
Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 1/225 (0%)
Query: 7 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRR 66
GYD ++T FSPDGR+FQ+EYA +AV T +GIK DG+V+ V+K I S+++ S +
Sbjct: 6 GYDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEK 65
Query: 67 IHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 126
I + H G A +GL AD R +V RA+ EA Y EPI V+ +++++ + T Y
Sbjct: 66 IFQIDEHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQY 125
Query: 127 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 186
+RP+G +++ G D + P+L+ +PSG Y AIG GR A E +M
Sbjct: 126 GGVRPYGTALLIAGVDDNKPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNM 185
Query: 187 RQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDEL 231
++ +Y E K A LE+ V E + + P+E+
Sbjct: 186 DAAILLGMDALYKAA-EGKFDAGTLEVGVVSLEDKKFRKLGPEEV 229
>sp|Q9M4T8|PSA5_SOYBN Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1
Length = 237
Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 114/207 (55%), Gaps = 15/207 (7%)
Query: 6 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNR 65
T YD V TFSP+GR+FQ+EYA +A+ T IG+K K+G+V+ VEK I S ++ P S
Sbjct: 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVE 65
Query: 66 RIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTL 125
+I + H G A++GL AD R +V A+ E N+ YGEP+ V+ Q LC L
Sbjct: 66 KIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQA------LCDL 119
Query: 126 YWWL---------RPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEI 176
RPFG +++ G+D +GP LY +PSG ++ G AIG G + A + +
Sbjct: 120 ALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNGKAIGSGSEGADSSL 179
Query: 177 EKLKLSEMTCRQGVIEVAKIIYGVHDE 203
++ ++T ++ I+ V +E
Sbjct: 180 QEQFNKDLTLQEAETIALSILKQVMEE 206
>sp|C5A2C2|PSA_THEGJ Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1
Length = 260
Score = 140 bits (354), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 110/188 (58%), Gaps = 2/188 (1%)
Query: 7 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRR 66
GYD ++T FSPDGR+FQ+ YA +AV T +G+K K G+V+ VEK I S+++ P S +
Sbjct: 9 GYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKGGVVLAVEKRITSRLIEPSSYEK 68
Query: 67 IHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 126
I + H A +G+ AD R +V RA+ EA Y YGEP+P+ L +++ T Y
Sbjct: 69 IFQIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQY 128
Query: 127 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 186
+RPFG +++ G + + P+LY +PSG + + AIG GR A E+ S+
Sbjct: 129 GGVRPFGAALLMAGVN-EKPELYETDPSGAYFEWKAVAIGSGRNTAMAIFEE-HYSDDID 186
Query: 187 RQGVIEVA 194
+G I++A
Sbjct: 187 MEGAIKLA 194
>sp|A4FZT6|PSA_METM5 Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=psmA PE=3 SV=1
Length = 259
Score = 140 bits (353), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 129/234 (55%), Gaps = 4/234 (1%)
Query: 5 GTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSN 64
+GYD ++T FSP+GR++Q+EYA +AV T +GIKCKDG+V+ V++ I SK++ S
Sbjct: 7 ASGYDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSI 66
Query: 65 RRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCT 124
+I + H A +GL AD R ++ RA+ EA YGE I V+ LA+++ T
Sbjct: 67 EKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYT 126
Query: 125 LYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEM 184
+ RPFG +++ G DR +L+ +PSG Y AIG GR A +E +M
Sbjct: 127 QHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYSEDM 186
Query: 185 TCRQGVIEVAKIIYGVHDEAKD-KAFELEMSWVCDESNRQHQKVPDELLEEAKA 237
T +G +E+A +Y + ++ K ++M+ V D + DE+ + KA
Sbjct: 187 TVNEG-MELA--LYALSKTTEELKPENIDMAIVKDSGKLVEKISVDEIEKIVKA 237
>sp|Q60177|PSA_METJA Proteasome subunit alpha OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=psmA PE=1 SV=1
Length = 261
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 3/225 (1%)
Query: 6 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNR 65
+ YD ++T FSP+GR++Q+EYA +AV T IGI CKDG+V+ V++ I SK++ S
Sbjct: 7 SAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIE 66
Query: 66 RIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTL 125
+I + H A +GL AD R ++ RA+ EA Y YGE I ++ LA+++ T
Sbjct: 67 KIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQ 126
Query: 126 YWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMT 185
+ +RPFG +++ G D++ +L+ +PSG Y AIG GR +EK ++T
Sbjct: 127 HGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDIT 186
Query: 186 CRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDE 230
+G+ + +++ K + ++ + V D Q +K+P E
Sbjct: 187 LDEGLELAITALTKANEDIKPENVDVCIITVKDA---QFKKIPVE 228
>sp|A6VIP0|PSA_METM7 Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=psmA PE=3 SV=1
Length = 259
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 128/234 (54%), Gaps = 4/234 (1%)
Query: 5 GTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSN 64
+GYD ++T FSP+GR++Q+EYA +AV T +GIKCKDG+V+ V++ I SK++ S
Sbjct: 7 ASGYDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSI 66
Query: 65 RRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCT 124
+I + H A +GL AD R ++ RA+ EA YGE I V+ LA+++ T
Sbjct: 67 EKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYT 126
Query: 125 LYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEM 184
+ RPFG +++ G DR +L+ +PSG Y AIG GR A +E M
Sbjct: 127 QHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENM 186
Query: 185 TCRQGVIEVAKIIYGVHDEAKD-KAFELEMSWVCDESNRQHQKVPDELLEEAKA 237
T +G +E+A +Y + ++ K ++M+ V D + DE+ + KA
Sbjct: 187 TVNEG-MELA--LYALSKTTEELKPENIDMAIVKDSGKLVEKISVDEIEKIVKA 237
>sp|Q42134|PSA5B_ARATH Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2
PE=1 SV=2
Length = 237
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 113/207 (54%), Gaps = 15/207 (7%)
Query: 6 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNR 65
T YD V TFSP+GR+FQ+EYA +A+ T IG+K K+G+V+ VEK I S ++ P S
Sbjct: 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVE 65
Query: 66 RIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTL 125
+I + H G A++GL AD R +V A+ E N+ YGEP+ V+ Q LC L
Sbjct: 66 KIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQA------LCDL 119
Query: 126 YWWL---------RPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEI 176
RPFG +++ G+D +GP LY +PSG ++ AIG G + A + +
Sbjct: 120 ALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSL 179
Query: 177 EKLKLSEMTCRQGVIEVAKIIYGVHDE 203
++ ++T ++ I+ V +E
Sbjct: 180 QEQFNKDITLQEAETIAVSILKQVMEE 206
>sp|Q6M0L9|PSA_METMP Proteasome subunit alpha OS=Methanococcus maripaludis (strain S2 /
LL) GN=psmA PE=3 SV=1
Length = 259
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 128/234 (54%), Gaps = 4/234 (1%)
Query: 5 GTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSN 64
+GYD ++T FSP+GR++Q+EYA +AV T +GIKCKDG+V+ V++ I SK++ S
Sbjct: 7 ASGYDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSI 66
Query: 65 RRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCT 124
+I + H A +GL AD R ++ RA+ EA YGE I V+ LA+++ T
Sbjct: 67 EKIFQIDDHIVAATSGLVADARVLIDRARIEAQMNRVSYGEAITVEALAKKICDIKQAYT 126
Query: 125 LYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEM 184
+ RPFG +++ G DR +L+ +PSG Y AIG GR A +E M
Sbjct: 127 QHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENM 186
Query: 185 TCRQGVIEVAKIIYGVHDEAKD-KAFELEMSWVCDESNRQHQKVPDELLEEAKA 237
T +G +E+A +Y + ++ K ++M+ + D + DE+ + KA
Sbjct: 187 TVSEG-MELA--LYALSKTTEELKPENIDMAIIKDSGKLVEKISVDEIEKIVKA 237
>sp|P32379|PSA5_YEAST Proteasome subunit alpha type-5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PUP2 PE=1 SV=2
Length = 260
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 116/213 (54%), Gaps = 19/213 (8%)
Query: 8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRI 67
YD V+TFSP+GR+FQ+EY+ +A+ T IGI K+G+V+GVEK S ++ S +I
Sbjct: 8 YDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKI 67
Query: 68 HSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 127
+ RH G A++GL AD R ++ A++ A + Y E I V+ L Q V C L
Sbjct: 68 VEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSV------CDLAL 121
Query: 128 WL------------RPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKT 174
RPFG +++ G+D DG QL+ EPSG YRY AIG G + A+
Sbjct: 122 RFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQA 181
Query: 175 EIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDK 207
E+ S +T ++ + V KI+ V +E D+
Sbjct: 182 ELLNEWHSSLTLKEAELLVLKILKQVMEEKLDE 214
>sp|A6URN9|PSA_METVS Proteasome subunit alpha OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1
Length = 259
Score = 138 bits (347), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 122/215 (56%), Gaps = 4/215 (1%)
Query: 5 GTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSN 64
+GYD ++T FSP+GR++Q+EYA +AV T +GIKCKDG+V+ V++ I SK++ S
Sbjct: 7 ASGYDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSI 66
Query: 65 RRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCT 124
+I + H A +GL AD R ++ RA+ EA YGE I V+ LA+++ T
Sbjct: 67 EKIFQIDDHIVAATSGLVADARVLIDRARVEAQVNRISYGEAITVEALAKKICDIKQAYT 126
Query: 125 LYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEM 184
+ RPFG +++ G DR +L+ +PSG Y AIG GR A +E+ M
Sbjct: 127 HHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPVAMEILEEKYDENM 186
Query: 185 TCRQGVIEVAKIIYGVHDEAKD-KAFELEMSWVCD 218
+ +G +E+A IY + ++ K ++M+ V D
Sbjct: 187 SVSEG-MELA--IYALSKTTEELKPENIDMAIVKD 218
>sp|O81149|PSA5A_ARATH Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1
PE=1 SV=1
Length = 237
Score = 138 bits (347), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 113/207 (54%), Gaps = 15/207 (7%)
Query: 6 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNR 65
T YD V TFSP+GR+FQ+EYA +A+ T IG+K K+G+V+ VEK I S ++ P S
Sbjct: 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVE 65
Query: 66 RIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTL 125
+I + H G A++GL AD R +V A+ E N+ YGEP+ V+ Q LC L
Sbjct: 66 KIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQA------LCDL 119
Query: 126 YWWL---------RPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEI 176
RPFG +++ G+D +GP LY +PSG ++ AIG G + A + +
Sbjct: 120 ALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSL 179
Query: 177 EKLKLSEMTCRQGVIEVAKIIYGVHDE 203
++ +++ ++ I+ V +E
Sbjct: 180 QEQFNKDLSLQEAETIAVSILKQVMEE 206
>sp|Q94561|PSA5_ENTHI Proteasome subunit alpha type-5 OS=Entamoeba histolytica PE=3 SV=2
Length = 247
Score = 138 bits (347), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 125/223 (56%), Gaps = 14/223 (6%)
Query: 9 DLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIH 68
D V TFS +GR+FQ+EYA +A+ TVIGI+ K+G+V+ VEK I+S +ML S +I
Sbjct: 9 DHGVNTFSSEGRLFQVEYATEAMKLGSTVIGIQTKEGVVLAVEKRISSPLMLGSSIEKII 68
Query: 69 SVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW- 127
+ H G AV+GL AD R ++ A+ EA N+ +Y EPI V+ +AQ ++ +L +
Sbjct: 69 EIDDHIGAAVSGLTADARTLIDNARLEAQNHRFMYDEPINVEVVAQAISD----LSLRFG 124
Query: 128 --------WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKL 179
RPFG +++ G D GP+L+ +PSG+ ++ A G G +AA++ + +
Sbjct: 125 EGSRKKKVMSRPFGVALLIAGVDETGPRLFQTDPSGMFIEFYAKATGAGTEAAQSILHEK 184
Query: 180 KLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNR 222
MT R+ I + V +E K + +E++ V E +
Sbjct: 185 YNKSMTLREAEILALSTLKQVMEE-KLNSKNVEVALVTVEKKK 226
>sp|A5UJS2|PSA_METS3 Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1
Length = 250
Score = 137 bits (346), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 103/184 (55%)
Query: 7 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRR 66
GYD ++T FSPDGR+FQ+EYA +AV T IGIKC +GIV+ V+K S ++ S +
Sbjct: 8 GYDRAITVFSPDGRLFQVEYAREAVKRGTTSIGIKCSEGIVLAVDKRTTSNLVEATSIEK 67
Query: 67 IHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 126
I + H G A +GL AD R +V RA+ EA + Y EPI V L++++ + + T
Sbjct: 68 IFKIDEHIGAATSGLVADARALVERARVEAQINKITYSEPIRVDSLSKKLCDMLQMYTQN 127
Query: 127 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 186
+RPFG +I+GG +L+ +PSG Y AIG GR AA E +M
Sbjct: 128 GGVRPFGSALIIGGVYDGICKLFETDPSGALIEYKATAIGSGRSAAMDIFEDQYKDDMNL 187
Query: 187 RQGV 190
+ +
Sbjct: 188 NEAI 191
>sp|Q8PTU1|PSA_METMA Proteasome subunit alpha OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=psmA PE=3 SV=1
Length = 249
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 120/225 (53%), Gaps = 1/225 (0%)
Query: 7 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRR 66
GYD ++T FSPDGR+FQ+EYA +AV T +GIK DG+V+ V+K I S+++ S +
Sbjct: 8 GYDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEK 67
Query: 67 IHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 126
I + H G A +GL AD R +V RA+ EA Y E I V+ +++++ + T Y
Sbjct: 68 IFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQY 127
Query: 127 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 186
+RP+G +++ G D + P+L+ +PSG Y AIG GR A E +M
Sbjct: 128 GGVRPYGTALLIAGVDDNKPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNI 187
Query: 187 RQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDEL 231
++ +Y E K A LE+ V E + + P+E+
Sbjct: 188 DAAILLGMDALYKAA-EGKFDAGTLEVGVVSLEDKKFRKLGPEEV 231
>sp|A9A846|PSA_METM6 Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=psmA PE=3 SV=1
Length = 259
Score = 135 bits (339), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 126/234 (53%), Gaps = 4/234 (1%)
Query: 5 GTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSN 64
+GYD ++T FSP+GR++Q+EYA +AV T +GIKC DG+V+ V++ I SK++ S
Sbjct: 7 ASGYDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCNDGVVLAVDRRITSKLIDVSSI 66
Query: 65 RRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCT 124
+I + H A +GL AD R ++ RA+ EA YGE I V+ LA+++ T
Sbjct: 67 EKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYT 126
Query: 125 LYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEM 184
+ RPFG +++ G DR +L+ +PSG Y AIG GR A +E M
Sbjct: 127 QHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENM 186
Query: 185 TCRQGVIEVAKIIYGVHDEAKD-KAFELEMSWVCDESNRQHQKVPDELLEEAKA 237
+G +E+A +Y + ++ K ++M+ V D + DE+ + KA
Sbjct: 187 IVSEG-MELA--LYALSKTTEELKPENIDMAIVKDSGKLVEKISVDEIEKIVKA 237
>sp|Q18K08|PSA_HALWD Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM
16790) GN=psmA PE=3 SV=1
Length = 250
Score = 135 bits (339), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 101/183 (55%)
Query: 8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRI 67
YD +T FSPDGR++Q+EYA +AV +GI+ DGIV+ +K S +M P S +I
Sbjct: 10 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGIRTPDGIVLAADKRSRSPLMEPTSVEKI 69
Query: 68 HSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 127
H H G+A AG AD RQ++ A+ +A YGEP+ ++ L + V + T
Sbjct: 70 HKTDDHVGIASAGHVADARQLIDFARRQAQVNRLRYGEPVGIETLTKNVTDNIQQYTQVG 129
Query: 128 WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR 187
RPFG +++GG + P+LY +PSG Y + +IG R + +E+ E++
Sbjct: 130 GARPFGVALLIGGIEDGSPRLYETDPSGTPYEWKAVSIGADRSDLQEHLEENYTEELSLD 189
Query: 188 QGV 190
+GV
Sbjct: 190 EGV 192
>sp|Q59565|PSA_METTE Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3
SV=1
Length = 247
Score = 134 bits (338), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 119/225 (52%), Gaps = 1/225 (0%)
Query: 7 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRR 66
GYD ++T FSPDGR+FQ+EYA +AV T +GIK DG+V+ V+K I S+++ S +
Sbjct: 6 GYDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEK 65
Query: 67 IHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 126
I + H G A +GL AD R +V RA+ EA Y E I V+ +++++ + T Y
Sbjct: 66 IFQIDDHIGAATSGLVADARALVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQY 125
Query: 127 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 186
+RP+G +++ G D P+L+ +PSG Y AIG GR A E +M
Sbjct: 126 GGVRPYGTALLIAGVDDKRPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYKEDMNI 185
Query: 187 RQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDEL 231
++ +Y E K A LE+ V + + + P+E+
Sbjct: 186 EAAILLGMDALYKAA-EGKFDAGTLEVGVVSLQDKKFRKLEPEEV 229
>sp|O23712|PSA1B_ARATH Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2
PE=1 SV=2
Length = 277
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 96/171 (56%), Gaps = 2/171 (1%)
Query: 8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRI 67
YD VTT+SP GR+FQ+EYA +AV IG++ + +V+ S+ L R+I
Sbjct: 6 YDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSE--LSSHQRKI 63
Query: 68 HSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 127
V H G+A+AGL ADGR + +SE+ N+ Y P+PV L +A +CT
Sbjct: 64 FKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRS 123
Query: 128 WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 178
W RP+G G+++GG D G LY PSG + Y AIG QAAKT +E+
Sbjct: 124 WKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLER 174
>sp|P34066|PSA1A_ARATH Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1
PE=1 SV=3
Length = 278
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 96/171 (56%), Gaps = 2/171 (1%)
Query: 8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRI 67
YD VTT+SP GR+FQ+EYA +AV IG++ + +V+ S+ L R+I
Sbjct: 6 YDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSE--LSSHQRKI 63
Query: 68 HSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 127
V H G+A+AGL ADGR + +SE+ N+ Y P+PV L +A +CT
Sbjct: 64 FKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRS 123
Query: 128 WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 178
W RP+G G+++GG D G LY PSG + Y AIG QAAKT +E+
Sbjct: 124 WKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLER 174
>sp|Q95005|PSA7_CAEEL Proteasome subunit alpha type-7 OS=Caenorhabditis elegans GN=pas-4
PE=1 SV=1
Length = 253
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 105/180 (58%), Gaps = 1/180 (0%)
Query: 8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRI 67
YD ++T FSPDG +FQ+EYA +AV T +G++ KD IV+GVEK + + R+I
Sbjct: 4 YDRAITIFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKKSIPALQDDRTIRKI 63
Query: 68 HSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 127
H + H +A AGL+AD R +V RA+ E +Y+ +P+ V +++ +A+ T
Sbjct: 64 HMIDDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSP 123
Query: 128 WLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 186
RPFG +++GG+D DG P+L+ EPSG Y Y A G+G + + +E+ E T
Sbjct: 124 GRRPFGISMLIGGFDHDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEENTV 183
>sp|O82530|PSA4_PETHY Proteasome subunit alpha type-4 OS=Petunia hybrida GN=PAC1 PE=2
SV=1
Length = 249
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 121/211 (57%), Gaps = 2/211 (0%)
Query: 8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMM-LPGSNRR 66
YD T FSP+GR++Q+EYA +A+ N+G+ IGI KDG+V+ EK + SK++ S+ +
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGISSKDGVVLVGEKKVTSKLLQTSTSSEK 64
Query: 67 IHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 126
++ + H AVAG+ +D ++ A+ +A Y Y EP+PV++L Q + T Y
Sbjct: 65 MYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQY 124
Query: 127 WWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMT 185
L PFG + G+D++ G QL+M +PSG + AAIG QAA++ +++ ++T
Sbjct: 125 GGLPPFGVSFLFAGWDKNFGFQLFMSDPSGNYAGWKAAAIGANNQAAQSMLKQDYKDDIT 184
Query: 186 CRQGVIEVAKIIYGVHDEAKDKAFELEMSWV 216
+ V K++ D + +LE++ V
Sbjct: 185 REEAVQLALKVLSKTMDSTSLTSEKLELAEV 215
>sp|C3NEC6|PSA_SULIY Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14
/ Yellowstone #1) GN=psmA PE=3 SV=1
Length = 241
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 107/189 (56%)
Query: 7 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRR 66
GYD ++T FSPDG ++Q++YA +AV T IGIK K G+V+ EK A ++ S +
Sbjct: 9 GYDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEK 68
Query: 67 IHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 126
+ + H G + AGLA+DGR ++ A++ A + +Y EP+ + L + VA + T +
Sbjct: 69 VFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQH 128
Query: 127 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 186
+RPFG +++ G D+ P+LYM EPSG Y AIG+G A +EK ++T
Sbjct: 129 GGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTI 188
Query: 187 RQGVIEVAK 195
++ K
Sbjct: 189 EDTILLALK 197
>sp|C3NHC6|PSA_SULIN Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51
/ Yellowstone #2) GN=psmA PE=3 SV=1
Length = 241
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 107/189 (56%)
Query: 7 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRR 66
GYD ++T FSPDG ++Q++YA +AV T IGIK K G+V+ EK A ++ S +
Sbjct: 9 GYDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEK 68
Query: 67 IHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 126
+ + H G + AGLA+DGR ++ A++ A + +Y EP+ + L + VA + T +
Sbjct: 69 VFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQH 128
Query: 127 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 186
+RPFG +++ G D+ P+LYM EPSG Y AIG+G A +EK ++T
Sbjct: 129 GGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTI 188
Query: 187 RQGVIEVAK 195
++ K
Sbjct: 189 EDTILLALK 197
>sp|C3MVG1|PSA_SULIM Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 /
Kamchatka #1) GN=psmA PE=3 SV=1
Length = 241
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 107/189 (56%)
Query: 7 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRR 66
GYD ++T FSPDG ++Q++YA +AV T IGIK K G+V+ EK A ++ S +
Sbjct: 9 GYDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEK 68
Query: 67 IHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 126
+ + H G + AGLA+DGR ++ A++ A + +Y EP+ + L + VA + T +
Sbjct: 69 VFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQH 128
Query: 127 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 186
+RPFG +++ G D+ P+LYM EPSG Y AIG+G A +EK ++T
Sbjct: 129 GGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTI 188
Query: 187 RQGVIEVAK 195
++ K
Sbjct: 189 EDTILLALK 197
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,443,080
Number of Sequences: 539616
Number of extensions: 3912846
Number of successful extensions: 11528
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 148
Number of HSP's that attempted gapping in prelim test: 10986
Number of HSP's gapped (non-prelim): 394
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)