Query 025676
Match_columns 249
No_of_seqs 128 out of 1169
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:19:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0184 20S proteasome, regula 100.0 5.9E-65 1.3E-69 412.7 23.3 247 1-247 1-247 (254)
2 PRK03996 proteasome subunit al 100.0 8.9E-62 1.9E-66 417.1 30.6 237 1-239 3-239 (241)
3 PTZ00246 proteasome subunit al 100.0 1.3E-61 2.7E-66 418.9 31.4 240 1-243 1-245 (253)
4 cd03750 proteasome_alpha_type_ 100.0 9.8E-62 2.1E-66 413.4 30.0 226 8-236 1-226 (227)
5 KOG0176 20S proteasome, regula 100.0 1.1E-62 2.4E-67 393.0 19.9 232 4-238 4-240 (241)
6 cd03751 proteasome_alpha_type_ 100.0 2.1E-60 4.5E-65 401.0 26.9 211 6-216 2-212 (212)
7 cd03752 proteasome_alpha_type_ 100.0 3.2E-59 7E-64 394.3 27.2 211 6-216 1-213 (213)
8 TIGR03633 arc_protsome_A prote 100.0 1.1E-58 2.3E-63 394.0 27.8 224 6-231 1-224 (224)
9 cd03755 proteasome_alpha_type_ 100.0 4.8E-58 1E-62 385.6 26.6 206 8-216 1-207 (207)
10 cd03749 proteasome_alpha_type_ 100.0 7E-58 1.5E-62 385.6 26.7 207 8-216 1-210 (211)
11 COG0638 PRE1 20S proteasome, a 100.0 5.2E-57 1.1E-61 385.6 29.6 234 6-243 1-236 (236)
12 cd03756 proteasome_alpha_arche 100.0 3.1E-57 6.8E-62 381.7 27.7 210 7-217 1-210 (211)
13 cd03754 proteasome_alpha_type_ 100.0 3E-57 6.4E-62 382.7 26.3 209 7-216 1-215 (215)
14 KOG0183 20S proteasome, regula 100.0 2.3E-57 5E-62 366.6 19.0 232 6-242 2-236 (249)
15 cd03753 proteasome_alpha_type_ 100.0 3E-56 6.5E-61 376.2 26.6 208 8-216 1-213 (213)
16 cd01911 proteasome_alpha prote 100.0 2.5E-56 5.5E-61 375.6 25.9 208 8-216 1-209 (209)
17 KOG0178 20S proteasome, regula 100.0 2.6E-56 5.7E-61 359.7 23.5 237 6-242 3-243 (249)
18 KOG0181 20S proteasome, regula 100.0 5.1E-56 1.1E-60 354.1 17.8 229 6-238 4-232 (233)
19 KOG0182 20S proteasome, regula 100.0 1.7E-54 3.7E-59 349.4 23.8 234 5-240 6-243 (246)
20 KOG0863 20S proteasome, regula 100.0 4.9E-48 1.1E-52 315.5 21.8 234 5-242 3-239 (264)
21 TIGR03691 20S_bact_alpha prote 100.0 2.3E-46 5E-51 318.1 25.8 213 16-236 8-228 (228)
22 TIGR03690 20S_bact_beta protea 100.0 1.5E-45 3.3E-50 312.1 25.8 206 33-242 1-217 (219)
23 PTZ00488 Proteasome subunit be 100.0 5.9E-45 1.3E-49 313.0 26.4 204 30-242 35-241 (247)
24 cd03760 proteasome_beta_type_4 100.0 9.4E-45 2E-49 302.7 22.9 185 33-219 1-190 (197)
25 cd03761 proteasome_beta_type_5 100.0 3.4E-44 7.4E-49 297.2 24.6 181 35-219 1-182 (188)
26 cd03758 proteasome_beta_type_2 100.0 2.2E-44 4.7E-49 299.5 23.5 183 35-219 2-186 (193)
27 cd03759 proteasome_beta_type_3 100.0 2E-44 4.3E-49 300.3 22.9 183 33-219 2-187 (195)
28 cd03765 proteasome_beta_bacter 100.0 5.1E-44 1.1E-48 304.3 23.8 207 36-243 2-224 (236)
29 TIGR03634 arc_protsome_B prote 100.0 9.9E-44 2.1E-48 293.6 24.3 182 34-219 1-183 (185)
30 cd03757 proteasome_beta_type_1 100.0 4.6E-43 9.9E-48 295.6 22.4 186 31-220 5-201 (212)
31 cd03764 proteasome_beta_archea 100.0 1.7E-42 3.6E-47 287.0 25.1 186 35-227 1-187 (188)
32 cd03763 proteasome_beta_type_7 100.0 2.6E-42 5.7E-47 286.1 23.9 180 35-219 1-181 (189)
33 PF00227 Proteasome: Proteasom 100.0 4.4E-42 9.5E-47 284.2 22.9 186 31-216 1-190 (190)
34 cd03762 proteasome_beta_type_6 100.0 9.2E-42 2E-46 282.6 23.7 180 35-219 1-182 (188)
35 cd01912 proteasome_beta protea 100.0 1.7E-41 3.6E-46 281.0 23.8 181 35-219 1-183 (189)
36 cd01906 proteasome_protease_Hs 100.0 3.6E-41 7.7E-46 277.0 24.2 180 35-216 1-182 (182)
37 KOG0177 20S proteasome, regula 100.0 2.9E-36 6.3E-41 240.0 16.1 183 35-221 2-188 (200)
38 KOG0173 20S proteasome, regula 100.0 1.6E-34 3.6E-39 239.1 17.4 187 28-219 31-218 (271)
39 KOG0179 20S proteasome, regula 100.0 6.3E-34 1.4E-38 229.8 18.4 193 31-228 26-231 (235)
40 KOG0174 20S proteasome, regula 100.0 4.9E-34 1.1E-38 228.0 15.0 201 30-236 15-217 (224)
41 KOG0175 20S proteasome, regula 100.0 1.1E-33 2.4E-38 234.7 16.8 205 31-242 68-273 (285)
42 KOG0185 20S proteasome, regula 100.0 2.1E-33 4.6E-38 230.3 15.4 220 11-234 12-248 (256)
43 cd01901 Ntn_hydrolase The Ntn 100.0 5.5E-30 1.2E-34 204.7 22.1 161 35-198 1-163 (164)
44 PRK05456 ATP-dependent proteas 100.0 2E-30 4.4E-35 210.9 18.6 164 34-213 1-169 (172)
45 cd01913 protease_HslV Protease 100.0 2.8E-29 6.1E-34 203.0 18.1 163 35-214 1-169 (171)
46 TIGR03692 ATP_dep_HslV ATP-dep 100.0 6.7E-29 1.5E-33 200.8 17.7 164 35-214 1-169 (171)
47 KOG0180 20S proteasome, regula 100.0 5.2E-27 1.1E-31 184.5 17.8 184 32-219 6-192 (204)
48 COG3484 Predicted proteasome-t 99.5 2.8E-13 6E-18 109.9 11.8 208 36-244 3-226 (255)
49 PF10584 Proteasome_A_N: Prote 99.5 1.5E-14 3.2E-19 77.1 2.4 23 8-30 1-23 (23)
50 COG5405 HslV ATP-dependent pro 99.3 4.1E-11 9E-16 94.1 10.8 169 32-216 2-175 (178)
51 PF09894 DUF2121: Uncharacteri 96.8 0.13 2.9E-06 42.3 15.4 48 170-217 131-178 (194)
52 COG4079 Uncharacterized protei 95.0 2 4.3E-05 36.8 15.0 171 35-236 2-197 (293)
53 KOG3361 Iron binding protein i 80.7 2.6 5.6E-05 32.7 3.8 82 149-244 71-152 (157)
54 smart00481 POLIIIAc DNA polyme 55.8 14 0.00031 24.4 2.9 32 13-44 6-38 (67)
55 PF11211 DUF2997: Protein of u 46.2 37 0.0008 21.5 3.4 31 149-179 3-33 (48)
56 PRK08868 flagellar protein Fla 45.6 1.3E+02 0.0029 23.7 7.2 56 186-241 73-132 (144)
57 PRK08452 flagellar protein Fla 44.3 1.4E+02 0.0031 22.9 7.2 32 210-241 83-114 (124)
58 cd06404 PB1_aPKC PB1 domain is 43.4 1.2E+02 0.0026 21.6 6.9 58 181-245 17-74 (83)
59 PF03646 FlaG: FlaG protein; 41.4 84 0.0018 23.0 5.4 33 209-241 66-98 (107)
60 PF14804 Jag_N: Jag N-terminus 41.3 42 0.00092 21.5 3.2 33 184-223 5-37 (52)
61 PF07499 RuvA_C: RuvA, C-termi 39.5 17 0.00037 22.6 1.1 32 165-196 13-45 (47)
62 PRK07738 flagellar protein Fla 39.1 1.7E+02 0.0037 22.2 7.0 56 186-241 48-107 (117)
63 PF12566 DUF3748: Protein of u 35.2 27 0.00058 26.5 1.7 24 10-49 70-93 (122)
64 PRK04081 hypothetical protein; 32.7 62 0.0013 26.9 3.6 27 218-244 77-103 (207)
65 PF02811 PHP: PHP domain; Int 30.7 47 0.001 25.8 2.7 30 13-42 7-37 (175)
66 PF06057 VirJ: Bacterial virul 30.2 64 0.0014 26.8 3.4 34 106-143 44-77 (192)
67 PF04539 Sigma70_r3: Sigma-70 28.0 1.1E+02 0.0023 20.7 3.8 32 89-120 3-34 (78)
68 PF08140 Cuticle_1: Crustacean 27.4 87 0.0019 19.1 2.7 30 13-49 4-33 (40)
69 COG0279 GmhA Phosphoheptose is 26.8 75 0.0016 25.9 3.1 35 15-49 116-151 (176)
70 COG4831 Roadblock/LC7 domain [ 26.0 27 0.00058 25.6 0.4 8 14-21 19-26 (109)
71 PRK09732 hypothetical protein; 24.8 1.8E+02 0.0039 22.6 4.9 34 182-219 5-38 (134)
72 PRK14065 exodeoxyribonuclease 24.1 1.8E+02 0.0039 20.8 4.2 32 170-201 32-63 (86)
73 PRK07328 histidinol-phosphatas 23.6 84 0.0018 27.1 3.1 30 13-42 10-39 (269)
74 COG1387 HIS2 Histidinol phosph 23.5 79 0.0017 26.9 2.9 28 13-41 9-36 (237)
75 PF14593 PH_3: PH domain; PDB: 23.4 74 0.0016 23.6 2.4 16 144-159 36-51 (104)
76 PF12392 DUF3656: Collagenase 22.4 3.3E+02 0.0072 20.2 10.1 97 129-246 21-117 (122)
77 COG0771 MurD UDP-N-acetylmuram 22.2 78 0.0017 29.9 2.8 62 134-196 346-410 (448)
78 PRK06361 hypothetical protein; 21.9 94 0.002 25.6 3.0 30 13-43 3-32 (212)
79 PF03928 DUF336: Domain of unk 21.7 1.1E+02 0.0024 23.3 3.2 34 182-219 1-34 (132)
80 COG1986 Inosine/xanthosine tri 21.5 2.4E+02 0.0052 23.0 5.1 40 210-249 27-67 (175)
81 PRK11092 bifunctional (p)ppGpp 21.0 83 0.0018 31.5 2.9 40 8-47 384-431 (702)
82 PF02609 Exonuc_VII_S: Exonucl 20.7 1.7E+02 0.0038 18.5 3.4 31 173-203 9-39 (53)
83 TIGR01856 hisJ_fam histidinol 20.5 98 0.0021 26.4 2.9 30 13-42 7-36 (253)
84 cd01262 PH_PDK1 3-Phosphoinosi 20.4 72 0.0016 23.1 1.7 14 144-157 24-37 (89)
85 cd05781 DNA_polB_B3_exo DEDDy 20.3 52 0.0011 26.9 1.1 59 36-94 27-86 (188)
86 PF06018 CodY: CodY GAF-like d 20.2 4.9E+02 0.011 21.3 6.7 68 88-180 2-69 (177)
87 PRK00912 ribonuclease P protei 20.1 1.1E+02 0.0024 25.8 3.1 36 7-43 3-38 (237)
No 1
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-65 Score=412.70 Aligned_cols=247 Identities=69% Similarity=1.078 Sum_probs=243.6
Q ss_pred CCCCCCCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEec
Q 025676 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAG 80 (249)
Q Consensus 1 ~~~~~~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG 80 (249)
||||.++||.+.++|||+||+||+|||+||+.+|+|+|||+|+||||+++||.++++++.+....|||.|++||+|+++|
T Consensus 1 MSsIGtGyDls~s~fSpdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaG 80 (254)
T KOG0184|consen 1 MSSIGTGYDLSASTFSPDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAG 80 (254)
T ss_pred CCcccccccccceeeCCCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeee
Q 025676 81 LAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRY 160 (249)
Q Consensus 81 ~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~ 160 (249)
+.+|.+.+.+++|.++.+|+.+|+.++|...++.+++++.|.||+++..|||||+.++++||++||+||.++|+|.++.+
T Consensus 81 l~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~~LymiepSG~~~~Y 160 (254)
T KOG0184|consen 81 LIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGPQLYMIEPSGSSYGY 160 (254)
T ss_pred cccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCceEEEEcCCCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHH
Q 025676 161 FGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAAR 240 (249)
Q Consensus 161 ~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~ 240 (249)
+++|+|.|.+.+++.|||....+|+.+|+++.+.+.|+.+++...++.|++||+|+..++++.++.+|.|.+++.-..+.
T Consensus 161 ~~aaiGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~el~~ea~~~a~ 240 (254)
T KOG0184|consen 161 KGAAIGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPSELLEEAEKYAK 240 (254)
T ss_pred eeeeccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcHHHHHHHHHHHH
Confidence 99999999999999999998889999999999999999999998999999999999999999999999999999999999
Q ss_pred Hhhhhcc
Q 025676 241 AALEEMD 247 (249)
Q Consensus 241 ~~~~~~~ 247 (249)
.++++.|
T Consensus 241 ~s~~~~d 247 (254)
T KOG0184|consen 241 ASLDEED 247 (254)
T ss_pred hhhcccc
Confidence 9999998
No 2
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=8.9e-62 Score=417.11 Aligned_cols=237 Identities=33% Similarity=0.551 Sum_probs=226.6
Q ss_pred CCCCCCCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEec
Q 025676 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAG 80 (249)
Q Consensus 1 ~~~~~~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG 80 (249)
|||++++||.++|+||||||++|+|||.+|+++|+|+|||+++||||||+|++.++++...++.+||++|++|++|+++|
T Consensus 3 ~~~~~~~y~~~~~~fsp~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG 82 (241)
T PRK03996 3 MQPQQMGYDRAITIFSPDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAASAG 82 (241)
T ss_pred CCccccccCCCCceECCCCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEcc
Confidence 89999999999999999999999999999999999999999999999999999997766566789999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeee
Q 025676 81 LAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRY 160 (249)
Q Consensus 81 ~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~ 160 (249)
..+|++.+.++++.+++.|+++++++++++.+++++++.+|.|+++++.|||+|++||||+|++||+||.+||+|++.++
T Consensus 83 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly~id~~G~~~~~ 162 (241)
T PRK03996 83 LVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYLEY 162 (241)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEEEECCCCCeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred cEEEecCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHH
Q 025676 161 FGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAA 239 (249)
Q Consensus 161 ~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~ 239 (249)
+++|+|.++..++++||+.|+++|+++||++++++||..+.++ ..++.++||++|+++++ .++.++++|++++++..
T Consensus 163 ~~~a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~-~~~~~~~~ei~~~~~~~ 239 (241)
T PRK03996 163 KATAIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVETK-KFRKLSVEEIEKYLEKL 239 (241)
T ss_pred eEEEECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCC-cEEECCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999887 66788899999998754 59999999999999764
No 3
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.3e-61 Score=418.89 Aligned_cols=240 Identities=33% Similarity=0.565 Sum_probs=226.8
Q ss_pred CCCCCCCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCC-CCceEEecCcEEEEEe
Q 025676 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGS-NRRIHSVHRHSGMAVA 79 (249)
Q Consensus 1 ~~~~~~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~-~~Ki~~i~~~i~~~~s 79 (249)
||+ +||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++++.+. .+|||+|+++++|+++
T Consensus 1 ~~~---~yd~~~~~fsp~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~s 77 (253)
T PTZ00246 1 MSR---RYDSRTTTFSPEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVA 77 (253)
T ss_pred CCC---ccCCCCceECCCCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEE
Confidence 654 899999999999999999999999999999999999999999999999999988764 7999999999999999
Q ss_pred cChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCcee
Q 025676 80 GLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISY 158 (249)
Q Consensus 80 G~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~ 158 (249)
|..+|++.+.+.+|.+++.|++.++.++++..+++.++..+|.|++++++|||+|++||||||+ .||+||++||+|++.
T Consensus 78 G~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~ 157 (253)
T PTZ00246 78 GLTADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYS 157 (253)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEe
Confidence 9999999999999999999999999999999999999999999999999999999999999995 789999999999999
Q ss_pred eecEEEecCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCC---CCcEEeCCHHHHHHH
Q 025676 159 RYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDES---NRQHQKVPDELLEEA 235 (249)
Q Consensus 159 ~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~---~~~~~~~~~~ei~~~ 235 (249)
+++++|+|+++.+++++||+.|+++|+++||++++++||..+.+++..++..+||++|+++. .+.|+.++++||+++
T Consensus 158 ~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~ 237 (253)
T PTZ00246 158 GWKATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAEL 237 (253)
T ss_pred cceEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHH
Confidence 99999999999999999999999999999999999999999999877778889999999763 235999999999999
Q ss_pred HHHHHHhh
Q 025676 236 KAAARAAL 243 (249)
Q Consensus 236 ~~~~~~~~ 243 (249)
+....+.-
T Consensus 238 l~~~~~~~ 245 (253)
T PTZ00246 238 LKKVTQEY 245 (253)
T ss_pred HHHHhhhh
Confidence 98865543
No 4
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.8e-62 Score=413.35 Aligned_cols=226 Identities=31% Similarity=0.522 Sum_probs=215.6
Q ss_pred CCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhHHHH
Q 025676 8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQ 87 (249)
Q Consensus 8 yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 87 (249)
||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++...++.+||++|++|++|+++|..+|++.
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFRV 80 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHHH
Confidence 89999999999999999999999999999999999999999999999977665567899999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEecC
Q 025676 88 IVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 167 (249)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~G~ 167 (249)
+.+.+|.+++.|++++|++|+++.++++|++.+|.|+++++.|||+|++||+|||++||+||++||+|++.+++++|+|+
T Consensus 81 l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~~~~~~~a~G~ 160 (227)
T cd03750 81 LVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKATAIGK 160 (227)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEEEECCCCCEEeeeEEEECC
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred ChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHH
Q 025676 168 GRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAK 236 (249)
Q Consensus 168 ~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~ 236 (249)
|+.+++++||++|+++||++||++++++||+.+.++ ..++.++||++|+++ +.++.++++|+++++
T Consensus 161 g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~-~l~~~~iev~iv~~~--~~~~~~~~~ei~~~~ 226 (227)
T cd03750 161 NYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEG-QMTEKNIEIGICGET--KGFRLLTPAEIKDYL 226 (227)
T ss_pred CCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEEECC--CCEEECCHHHHHHHh
Confidence 999999999999999999999999999999999987 457778999999965 248999999999986
No 5
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-62 Score=393.05 Aligned_cols=232 Identities=37% Similarity=0.559 Sum_probs=220.1
Q ss_pred CCCCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChh
Q 025676 4 IGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAA 83 (249)
Q Consensus 4 ~~~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~ 83 (249)
.++.||+.+++|||||||||||||.+|++.|+|.|||+.++|||||++||++++++.+++++||++|++||+|++||+.+
T Consensus 4 trseydrgVNTfSpEGRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SGl~a 83 (241)
T KOG0176|consen 4 TRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSGLIA 83 (241)
T ss_pred cHHHhcccccccCCCceeeehhhHHHHHhcCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeecccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhccccc-----ccccceeeEEEEEeCCCcEEEEECCCCcee
Q 025676 84 DGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWW-----LRPFGCGVILGGYDRDGPQLYMIEPSGISY 158 (249)
Q Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~-----~rp~~vs~il~G~d~~gp~Ly~idp~G~~~ 158 (249)
|++.+++++|.++++|++.||++|+++.+++.+|++..+|..... .|||||++|+||+|++||+||+.||+|++.
T Consensus 84 DarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSGtf~ 163 (241)
T KOG0176|consen 84 DARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSGTFI 163 (241)
T ss_pred chHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCCceE
Confidence 999999999999999999999999999999999999988875522 489999999999999999999999999999
Q ss_pred eecEEEecCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHH
Q 025676 159 RYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAA 238 (249)
Q Consensus 159 ~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~ 238 (249)
+|++-|||+|+..+.+.|++.|+++|+++||+.+++..|+.+.+. .....++|+++|++++ .|+++++||+++++.+
T Consensus 164 ~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMee-Kl~~~Nvev~~vt~e~--~f~~~t~EE~~~~i~~ 240 (241)
T KOG0176|consen 164 RYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEE-KLNSNNVEVAVVTPEG--EFHIYTPEEVEQVIKR 240 (241)
T ss_pred EecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHH-hcCccceEEEEEcccC--ceEecCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999988 5556679999999863 4999999999998864
No 6
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.1e-60 Score=400.97 Aligned_cols=211 Identities=73% Similarity=1.189 Sum_probs=203.1
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhHH
Q 025676 6 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADG 85 (249)
Q Consensus 6 ~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 85 (249)
++||+++|+|||||||+|+|||++|+++|+|+|||+++||||||+|++.++.+...+..+|||+|++|++|+++|..+|+
T Consensus 2 ~~yd~~~t~fsp~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 81 (212)
T cd03751 2 TGYDLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLADG 81 (212)
T ss_pred CCccCCCceECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHhH
Confidence 68999999999999999999999999999999999999999999999998877766678999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEe
Q 025676 86 RQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAI 165 (249)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~ 165 (249)
+.+.+++|.+++.|++++|++|+++.++++|++++|.|++++++|||+|++|+||+|++||+||++||+|++.+++++|+
T Consensus 82 ~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~~~~~~~a~ 161 (212)
T cd03751 82 RHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYFGCAI 161 (212)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEEEECCCCCEEeeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred cCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEE
Q 025676 166 GKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWV 216 (249)
Q Consensus 166 G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv 216 (249)
|+++.+++++||+.|+++||++||+++++++|+.+.+.......+|||+++
T Consensus 162 G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 162 GKGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred CCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 999999999999999999999999999999999999976677788998874
No 7
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.2e-59 Score=394.30 Aligned_cols=211 Identities=36% Similarity=0.560 Sum_probs=203.7
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCC-CCCceEEecCcEEEEEecChhH
Q 025676 6 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAAD 84 (249)
Q Consensus 6 ~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~-~~~Ki~~i~~~i~~~~sG~~~D 84 (249)
.+||+++|+|||||||+|+|||++|+++|+|+|||+++||||||+|++.++++++.+ ..+||++|++|++|+++|..+|
T Consensus 1 ~~yd~~~~~fsp~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (213)
T cd03752 1 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSD 80 (213)
T ss_pred CCcCCCCceECCCCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHh
Confidence 479999999999999999999999999999999999999999999999999988876 6799999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceeeecEE
Q 025676 85 GRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGA 163 (249)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~~~~~ 163 (249)
++.+.+++|.+++.|++++|++|+++.++++|+..+|.||+.++.|||+|++|++|||+ .||+||.+||+|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~ 160 (213)
T cd03752 81 ANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKAT 160 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999995 78999999999999999999
Q ss_pred EecCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEE
Q 025676 164 AIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWV 216 (249)
Q Consensus 164 a~G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv 216 (249)
|+|+++..++++||+.|+++||++||++++.+||..+.+|+...+.++||++|
T Consensus 161 a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 161 AIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred EECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 99999999999999999999999999999999999999987777888999875
No 8
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.1e-58 Score=393.99 Aligned_cols=224 Identities=37% Similarity=0.610 Sum_probs=211.9
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhHH
Q 025676 6 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADG 85 (249)
Q Consensus 6 ~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 85 (249)
.+||.++|+|||+|||+|+|||++|+++|+|+|||+++||||||+|+|.+.++...+..+||++|+++++|+++|..+|+
T Consensus 1 ~~~~~~~~~f~p~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~ 80 (224)
T TIGR03633 1 MGYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADA 80 (224)
T ss_pred CCCCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHhH
Confidence 47999999999999999999999999999999999999999999999998776556677999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEe
Q 025676 86 RQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAI 165 (249)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~ 165 (249)
+.+.+.++.++..|+++++++++++.+++++++.+|.|++++++|||+|++||||+|+.||+||.+||.|++.+++++|+
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~~~~~~~a~ 160 (224)
T TIGR03633 81 RVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGALLEYKATAI 160 (224)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEEEECCCCCeecceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred cCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHH
Q 025676 166 GKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDEL 231 (249)
Q Consensus 166 G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~e 231 (249)
|+++.+++++|++.|+++|+++||++++++||..+.+ +..++..++|++|++++. .|+.++++|
T Consensus 161 G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~-~~~~~~~~~ 224 (224)
T TIGR03633 161 GAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDK-KFRKLSVEE 224 (224)
T ss_pred CCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCC-cEEECCCCC
Confidence 9999999999999999999999999999999999888 466777899999998643 588888775
No 9
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.8e-58 Score=385.58 Aligned_cols=206 Identities=32% Similarity=0.517 Sum_probs=196.5
Q ss_pred CCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhHHHH
Q 025676 8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQ 87 (249)
Q Consensus 8 yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 87 (249)
||.++|+|||||||+|+|||++|+++|+|+|||+++||||||+|++.+.++...+..+||++|++|++|+++|..+|++.
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADARV 80 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHHH
Confidence 89999999999999999999999999999999999999999999998877665566799999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceeeecEEEec
Q 025676 88 IVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIG 166 (249)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~~~~~a~G 166 (249)
+.+.+|.+++.|+++++++|+++.+++++++.+|+|++++++|||+|++|++|||+ .||+||++||+|++.+++++|+|
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G 160 (207)
T cd03755 81 LINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIG 160 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEEC
Confidence 99999999999999999999999999999999999999999999999999999996 58999999999999999999999
Q ss_pred CChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEE
Q 025676 167 KGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWV 216 (249)
Q Consensus 167 ~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv 216 (249)
+++..++++||+.|+++||++||++++++||..+.+ .++.++||+++
T Consensus 161 ~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 161 RNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred CCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 999999999999999999999999999999999997 34566898874
No 10
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7e-58 Score=385.56 Aligned_cols=207 Identities=32% Similarity=0.550 Sum_probs=198.0
Q ss_pred CCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhHHHH
Q 025676 8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQ 87 (249)
Q Consensus 8 yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 87 (249)
||+++|+|||||||+|+|||++|+++|+|+|||+++||||||+|++.++++. ...+|||+|++|++|++||..+|++.
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~l~--~~~~KI~~I~~~i~~~~sG~~~D~~~ 78 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSELS--SYQKKIFKVDDHIGIAIAGLTADARV 78 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCccccC--CccccEEEeCCCEEEEEEeChHhHHH
Confidence 8999999999999999999999999999999999999999999999887743 34599999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEecC
Q 025676 88 IVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 167 (249)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~G~ 167 (249)
+.+++|.+++.|+++++++|+++.+|++++..+|.||++.+.|||+|++||+|||++||+||++||+|++.+++++|+|+
T Consensus 79 l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~~~~~~~a~G~ 158 (211)
T cd03749 79 LSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTCPSGNYFEYKATSIGA 158 (211)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEEEECCCcCEeeeeEEEECC
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred ChHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHhhhccC-CCCceEEEEEE
Q 025676 168 GRQAAKTEIEKLKL--SEMTCRQGVIEVAKIIYGVHDEAK-DKAFELEMSWV 216 (249)
Q Consensus 168 ~~~~~~~~Le~~~~--~~ls~~eai~l~~~~l~~~~~~~~-~~~~~iei~iv 216 (249)
+++.++++||++|+ ++||++||+++++++|+.+.+++. .++.+|||++|
T Consensus 159 g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii 210 (211)
T cd03749 159 RSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIV 210 (211)
T ss_pred CcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEE
Confidence 99999999999998 599999999999999999998755 77888999987
No 11
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-57 Score=385.59 Aligned_cols=234 Identities=33% Similarity=0.538 Sum_probs=221.0
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHhhhcC-CcEEEEEeCCEEEEEEEccCCCCCccCCC-CCceEEecCcEEEEEecChh
Q 025676 6 TGYDLSVTTFSPDGRVFQIEYAAKAVDNS-GTVIGIKCKDGIVMGVEKLIASKMMLPGS-NRRIHSVHRHSGMAVAGLAA 83 (249)
Q Consensus 6 ~~yd~~~t~fspeGrl~Q~eya~~a~~~G-~t~Igi~~~dgVvla~d~~~~~~~~~~~~-~~Ki~~i~~~i~~~~sG~~~ 83 (249)
.+||+.+++|||+||++|+||+.+++++| +|+|||+++||||||+|+|.++++++.++ .+|||+|+|||+|+++|+.+
T Consensus 1 ~~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~a 80 (236)
T COG0638 1 AGYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAA 80 (236)
T ss_pred CCCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcH
Confidence 36999999999999999999999999876 99999999999999999999999988765 79999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEE
Q 025676 84 DGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGA 163 (249)
Q Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~ 163 (249)
|++.+++++|.+++.|++.+|++|+++.+++++++++|.|+++ +|||++++|+||+|+++|+||++||+|++.+++++
T Consensus 81 Da~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~~~~~~~ 158 (236)
T COG0638 81 DAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDDGGPRLYSTDPSGSYNEYKAT 158 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcCCCCeEEEECCCCceeecCEE
Confidence 9999999999999999999999999999999999999999987 89999999999999878999999999999999999
Q ss_pred EecCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHHHhh
Q 025676 164 AIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAAL 243 (249)
Q Consensus 164 a~G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~~~~ 243 (249)
|+|+|++.++++||+.|+++|+++||++++++||..+.+|+..++..++|++++++ +.++.++.++++.++....+++
T Consensus 159 a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~--~~~~~~~~~~~~~~~~~~~~~~ 236 (236)
T COG0638 159 AIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKD--EGFRKLDGEEIKKLLDDLSEKE 236 (236)
T ss_pred EEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcC--CCeEEcCHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999997767777899999986 3499999999999998876553
No 12
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.1e-57 Score=381.68 Aligned_cols=210 Identities=38% Similarity=0.659 Sum_probs=201.6
Q ss_pred CCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhHHH
Q 025676 7 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGR 86 (249)
Q Consensus 7 ~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 86 (249)
+||.++|+|||+|||+|+|||.+|+++|+|+|||+++||||+|+|++.+.++...+..+||++|+++++|+++|..+|++
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 80 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADAR 80 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 59999999999999999999999999999999999999999999999987766556679999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEec
Q 025676 87 QIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIG 166 (249)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~G 166 (249)
.+.+.++.+++.|+++++++++++.++++++..+|.|++++++|||+|++||||+|+.||+||.+||+|++.+++++|+|
T Consensus 81 ~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~~~~~~~a~G 160 (211)
T cd03756 81 VLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYNEYKATAIG 160 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEEEECCCCCeeeeEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred CChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEE
Q 025676 167 KGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVC 217 (249)
Q Consensus 167 ~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~ 217 (249)
+++..++++||+.|+++|+++||++++++||..+.+++ ..+..+||++|+
T Consensus 161 ~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~-~~~~~~~v~ii~ 210 (211)
T cd03756 161 SGRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEEN-ETPENVEIAYVT 210 (211)
T ss_pred CCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEe
Confidence 99999999999999999999999999999999998874 477889999986
No 13
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3e-57 Score=382.74 Aligned_cols=209 Identities=33% Similarity=0.506 Sum_probs=198.4
Q ss_pred CCCCCCcccCCCCcchhhhhHHHhhhc-CCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhHH
Q 025676 7 GYDLSVTTFSPDGRVFQIEYAAKAVDN-SGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADG 85 (249)
Q Consensus 7 ~yd~~~t~fspeGrl~Q~eya~~a~~~-G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 85 (249)
+||+++|+|||||||+|+|||++|+++ |+|+|||+++||||||+|+|.+.+++..+..+|||+|+++++|+++|+.+|+
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~ 80 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADS 80 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhH
Confidence 699999999999999999999999975 7899999999999999999999887766677999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceeeecEEE
Q 025676 86 RQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAA 164 (249)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~~~~~a 164 (249)
+.+.+++|.++..|+++++++|+++.+|+++++++|.|+++++.|||+|++|+||+|+ +||+||++||+|++.+++++|
T Consensus 81 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a 160 (215)
T cd03754 81 RSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATA 160 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999996 799999999999999999999
Q ss_pred ecCChHHHHHHHHhcCCCC--C--CHHHHHHHHHHHHHHhhhccCCCCceEEEEEE
Q 025676 165 IGKGRQAAKTEIEKLKLSE--M--TCRQGVIEVAKIIYGVHDEAKDKAFELEMSWV 216 (249)
Q Consensus 165 ~G~~~~~~~~~Le~~~~~~--l--s~~eai~l~~~~l~~~~~~~~~~~~~iei~iv 216 (249)
+|++++.++++||+.|+++ | |++||++++++||..+.+|+ .++.++||+||
T Consensus 161 ~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd-~~~~~~ei~~~ 215 (215)
T cd03754 161 AGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTD-FKATEIEVGVV 215 (215)
T ss_pred ECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 9999999999999999885 7 99999999999999999885 45788999875
No 14
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-57 Score=366.64 Aligned_cols=232 Identities=29% Similarity=0.475 Sum_probs=218.8
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhHH
Q 025676 6 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADG 85 (249)
Q Consensus 6 ~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 85 (249)
++||+.+|+|||||+|+|||||++|+.+|+|+||++++|+|||+++++...++.......||..+++|++|+++|+.+|+
T Consensus 2 srydraltvFSPDGhL~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aDA 81 (249)
T KOG0183|consen 2 SRYDRALTVFSPDGHLFQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTADA 81 (249)
T ss_pred CccccceEEECCCCCEEeeHhHHHHHhcCceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCccc
Confidence 57999999999999999999999999999999999999999999999999999887779999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCC-cEEEEECCCCceeeecEEE
Q 025676 86 RQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRYFGAA 164 (249)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~g-p~Ly~idp~G~~~~~~~~a 164 (249)
+.+++.+|.+|++|+++.+.|++++.++++|+.+.|+|||..+.||||++++++|+|++| |.||++||+|.+++|++.|
T Consensus 82 rilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~a 161 (249)
T KOG0183|consen 82 RILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANA 161 (249)
T ss_pred eeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccc
Confidence 999999999999999999999999999999999999999999999999999999999866 9999999999999999999
Q ss_pred ecCChHHHHHHHHhcCCCC--CCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHHHh
Q 025676 165 IGKGRQAAKTEIEKLKLSE--MTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAA 242 (249)
Q Consensus 165 ~G~~~~~~~~~Le~~~~~~--ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~~~ 242 (249)
+|.+++.+..||||+|.++ .+..++++|++++|-++... + +.+||++++.+.. .++.++.++|+.++..+...
T Consensus 162 iGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs-~--~~nie~aVm~~~~--~~~~l~~~~I~~~v~~ie~E 236 (249)
T KOG0183|consen 162 IGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQS-G--GKNIEVAVMKRRK--DLKMLESEEIDDIVKEIEQE 236 (249)
T ss_pred cccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhc-C--CCeeEEEEEecCC--ceeecCHHHHHHHHHHHHHH
Confidence 9999999999999999876 77899999999999998876 2 4559999998753 49999999999999887655
No 15
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3e-56 Score=376.21 Aligned_cols=208 Identities=37% Similarity=0.582 Sum_probs=197.2
Q ss_pred CCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhHHHH
Q 025676 8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQ 87 (249)
Q Consensus 8 yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 87 (249)
||+++|+|||||||+|+|||++|+++|+|+|||+++||||||+|++.++++...+..+||++|++|++|+++|..+|++.
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADART 80 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHHH
Confidence 89999999999999999999999999999999999999999999999887766667899999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccc-----cccccceeeEEEEEeCCCcEEEEECCCCceeeecE
Q 025676 88 IVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW-----WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFG 162 (249)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~-----~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~ 162 (249)
+.+.+|.+++.|++++|++|+++.+++++++.+|+|+++. ..|||+|++||||+|++||+||.+||+|++.++++
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~~~~~~ 160 (213)
T cd03753 81 LIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCDA 160 (213)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCeecccE
Confidence 9999999999999999999999999999999999998753 46999999999999999999999999999999999
Q ss_pred EEecCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEE
Q 025676 163 AAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWV 216 (249)
Q Consensus 163 ~a~G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv 216 (249)
+|+|++++.+.++|++.|+++||++||++++++||+.+.++ ..++..+||++|
T Consensus 161 ~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~-~~~~~~~ei~~~ 213 (213)
T cd03753 161 KAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEE-KLNSTNVELATV 213 (213)
T ss_pred EEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEC
Confidence 99999999999999999999999999999999999998876 466777998874
No 16
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=2.5e-56 Score=375.64 Aligned_cols=208 Identities=48% Similarity=0.767 Sum_probs=200.1
Q ss_pred CCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhHHHH
Q 025676 8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQ 87 (249)
Q Consensus 8 yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 87 (249)
||.++|+|||||||+|+|||++++++|+|+|||+++||||+|+|++.+.++...+..+|||+|+++++|+++|..+|++.
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 80 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADARV 80 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHHH
Confidence 89999999999999999999999999999999999999999999999988665556799999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCC-CcEEEEECCCCceeeecEEEec
Q 025676 88 IVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIG 166 (249)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~-gp~Ly~idp~G~~~~~~~~a~G 166 (249)
+.+.++.++..|++++|++|+++.+|+++++.+|.|++++++|||+|++||||+|++ ||+||.+||.|++.+++++|+|
T Consensus 81 l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G 160 (209)
T cd01911 81 LVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIG 160 (209)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeC
Confidence 999999999999999999999999999999999999999999999999999999975 8999999999999999999999
Q ss_pred CChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEE
Q 025676 167 KGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWV 216 (249)
Q Consensus 167 ~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv 216 (249)
+++..++++||+.|+++|+++||++++.+||..+.+++. ++..+||+++
T Consensus 161 ~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 161 KGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred CCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 999999999999999999999999999999999999976 8888998874
No 17
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-56 Score=359.68 Aligned_cols=237 Identities=27% Similarity=0.411 Sum_probs=224.2
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCC-CCCceEEecCcEEEEEecChhH
Q 025676 6 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAAD 84 (249)
Q Consensus 6 ~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~-~~~Ki~~i~~~i~~~~sG~~~D 84 (249)
..||...|+|||||||+|||||++++.+.+|+|||.++||||||++++.+++++..+ +.+||++|+|||+|+++|+.+|
T Consensus 3 r~ydsrttiFspEGRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~D 82 (249)
T KOG0178|consen 3 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSD 82 (249)
T ss_pred cCcCCcccccCCCcchHHHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEeccccc
Confidence 689999999999999999999999999999999999999999999999999998865 5699999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceeeecEE
Q 025676 85 GRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGA 163 (249)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~~~~~ 163 (249)
+..|++.+|..+|.|.++||++||++.|++.|+++.|.|||+.+.||||||++.+|||+ .|.+||+.||+|++..|++.
T Consensus 83 AnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ 162 (249)
T KOG0178|consen 83 ANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKAT 162 (249)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCcccccee
Confidence 99999999999999999999999999999999999999999999999999999999998 68999999999999999999
Q ss_pred EecCChHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCC-cEEeCCHHHHHHHHHHHHH
Q 025676 164 AIGKGRQAAKTEIEKLKLSEM-TCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNR-QHQKVPDELLEEAKAAARA 241 (249)
Q Consensus 164 a~G~~~~~~~~~Le~~~~~~l-s~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~-~~~~~~~~ei~~~~~~~~~ 241 (249)
|+|.++..++..|+.-|+++. +++||+.+|++.|....+....+...+||+.++++.++ .++++.++|+.+++++...
T Consensus 163 ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~k~~~ 242 (249)
T KOG0178|consen 163 CIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLKLLEKYHE 242 (249)
T ss_pred eeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHHHHHHhhh
Confidence 999999999999999888774 59999999999999999987778888999999998765 4899999999999987654
Q ss_pred h
Q 025676 242 A 242 (249)
Q Consensus 242 ~ 242 (249)
.
T Consensus 243 ~ 243 (249)
T KOG0178|consen 243 T 243 (249)
T ss_pred h
Confidence 3
No 18
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-56 Score=354.08 Aligned_cols=229 Identities=32% Similarity=0.518 Sum_probs=219.1
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhHH
Q 025676 6 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADG 85 (249)
Q Consensus 6 ~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 85 (249)
.+|..++|+|||+|+|.|+|||+.|+.+|.+.|||+-.||||||++++..+.+.+..+++|++.|.+||+|.+||..+|+
T Consensus 4 ~~y~fslTtFSpsGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~ 83 (233)
T KOG0181|consen 4 FGYSFSLTTFSPSGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMGPDY 83 (233)
T ss_pred cccceeeEEEcCCCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCCCce
Confidence 47999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEe
Q 025676 86 RQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAI 165 (249)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~ 165 (249)
+.+++..|+.++.|...|+++||+..++..++..+|+|||.++.||||++++++|||+++|.||++||+|++..|+++|+
T Consensus 84 RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p~LyQvdPSGsyf~wkatA~ 163 (233)
T KOG0181|consen 84 RVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGPLLYQVDPSGSYFAWKATAM 163 (233)
T ss_pred eehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCceeEEEECCccceeehhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHH
Q 025676 166 GKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAA 238 (249)
Q Consensus 166 G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~ 238 (249)
|.+...+++|||++|+++|.+++++..|+.+|++..+. ..+..+|||+++.. ..|++++..||+.++..
T Consensus 164 Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~feg-e~~~~nieigv~~~---~~F~~lt~~eI~d~l~~ 232 (233)
T KOG0181|consen 164 GKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEG-EMTAKNIEIGVCGE---NGFRRLTPAEIEDYLAS 232 (233)
T ss_pred ccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhcc-ccccCceEEEEecC---CceeecCHHHHHHHHhc
Confidence 99999999999999999999999999999999998876 45567799999863 25999999999998864
No 19
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-54 Score=349.42 Aligned_cols=234 Identities=29% Similarity=0.448 Sum_probs=221.3
Q ss_pred CCCCCCCCcccCCCCcchhhhhHHHhhhc-CCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChh
Q 025676 5 GTGYDLSVTTFSPDGRVFQIEYAAKAVDN-SGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAA 83 (249)
Q Consensus 5 ~~~yd~~~t~fspeGrl~Q~eya~~a~~~-G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~ 83 (249)
..+||+++|+|||||||+|||||+||+++ |-|.||++++|++|+++.|+++.+++..+++..+|+|+.+|+|+++|..+
T Consensus 6 ~agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~tG~~a 85 (246)
T KOG0182|consen 6 SAGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVITGMIA 85 (246)
T ss_pred cCCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEEecCCc
Confidence 58999999999999999999999999998 66999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceeeecE
Q 025676 84 DGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFG 162 (249)
Q Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~~~~ 162 (249)
|++..+.++|.++.+++++||.+||++.||+++++..|.|||+..|||+||.+++.|+|+ .||.+|.+||.|-+..+++
T Consensus 86 Dar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kA 165 (246)
T KOG0182|consen 86 DARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKA 165 (246)
T ss_pred chHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCcccccccee
Confidence 999999999999999999999999999999999999999999999999999999999997 6899999999999999999
Q ss_pred EEecCChHHHHHHHHhcCCCC--CCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHH
Q 025676 163 AAIGKGRQAAKTEIEKLKLSE--MTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAAR 240 (249)
Q Consensus 163 ~a~G~~~~~~~~~Le~~~~~~--ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~ 240 (249)
++.|.....+.++|||+|+++ +|.+|++++++.||..+..- +.+..++||++++.+.. .|++|+.+||++++...-
T Consensus 166 taaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~-Dfk~se~EVgvv~~~~p-~f~~Ls~~eie~hL~~IA 243 (246)
T KOG0182|consen 166 TAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGI-DFKSSELEVGVVTVDNP-EFRILSAEEIEEHLQAIA 243 (246)
T ss_pred eecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhc-ccCCcceEEEEEEcCCc-ceeeccHHHHHHHHHHhh
Confidence 999999999999999999887 77999999999999998876 44566799999998743 499999999999997654
No 20
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-48 Score=315.55 Aligned_cols=234 Identities=26% Similarity=0.440 Sum_probs=217.0
Q ss_pred CCCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhH
Q 025676 5 GTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAAD 84 (249)
Q Consensus 5 ~~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D 84 (249)
++.||...|+|||+|||+|||||++|++.|++.||++.++.+||++=++..+.+. +.+.||++|++|++++++|+.+|
T Consensus 3 rnqyd~d~t~wsPqGrl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~seLs--s~QkKi~~iD~h~g~siAGLt~D 80 (264)
T KOG0863|consen 3 RNQYDNDVTTWSPQGRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSELS--SHQKKIFKIDDHIGISIAGLTAD 80 (264)
T ss_pred cccccCceeEECCcceehHHHHHHHHHhcccceEeecccceEEEeeeccchhHHH--HhhheeEecccccceEEeccCcc
Confidence 5789999999999999999999999999999999999999999998887765552 44689999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEE
Q 025676 85 GRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAA 164 (249)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a 164 (249)
++.+++++|.+|..+++.|++++|+..+...|.+.+|..||+.+.|||||.++++|+|+.||+||.++|+|++.++++.+
T Consensus 81 arvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~e~~Psg~v~e~~g~s 160 (264)
T KOG0863|consen 81 ARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLYEFCPSGNVFECKGMS 160 (264)
T ss_pred hHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCceeEEEcCCccEEEEeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCChHHHHHHHHhcC--CCCCCHHHHHHHHHHHHHHhhhcc-CCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHHH
Q 025676 165 IGKGRQAAKTEIEKLK--LSEMTCRQGVIEVAKIIYGVHDEA-KDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARA 241 (249)
Q Consensus 165 ~G~~~~~~~~~Le~~~--~~~ls~~eai~l~~~~l~~~~~~~-~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~~ 241 (249)
||+.++.+.++||++. .++++.+|.|..++.||+.....+ ..++.+++|+||.++ .+|.+++.+++.+++.-.+.
T Consensus 161 IGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd--~pf~~~d~~~~~k~~~~~~~ 238 (264)
T KOG0863|consen 161 IGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKD--EPFTILDQKDVAKYVDLFKK 238 (264)
T ss_pred cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCC--CceEeecHHHHHHHHHHhhc
Confidence 9999999999999874 368999999999999999988643 667788999999886 46999999999999876654
Q ss_pred h
Q 025676 242 A 242 (249)
Q Consensus 242 ~ 242 (249)
+
T Consensus 239 ~ 239 (264)
T KOG0863|consen 239 V 239 (264)
T ss_pred C
Confidence 3
No 21
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=2.3e-46 Score=318.11 Aligned_cols=213 Identities=17% Similarity=0.163 Sum_probs=189.1
Q ss_pred CCCCcch-hhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhHHHHHHHHHHH
Q 025676 16 SPDGRVF-QIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKS 94 (249)
Q Consensus 16 speGrl~-Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~ 94 (249)
+|+.-+- .-|||++|+++|+|+|||+++||||||+|++. ++.+|||+|++||+|+++|..+|++.+++.++.
T Consensus 8 ~~~~~~~~~~EYA~kav~~g~T~VGIk~kdgVVLaaek~~-------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~ 80 (228)
T TIGR03691 8 SPEQIMRDRAELARKGIARGRSVVVLTYADGILFVAENPS-------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIR 80 (228)
T ss_pred CHHHHHhhHHHHHHHHHHcCCcEEEEEeCCeEEEEEecCC-------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHH
Confidence 4444333 35899999999999999999999999999962 357999999999999999999999999999999
Q ss_pred HHHHhHHHhC-CCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeC--CCcEEEEECCCCceeeec-EEEecCChH
Q 025676 95 EATNYESVYG-EPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR--DGPQLYMIEPSGISYRYF-GAAIGKGRQ 170 (249)
Q Consensus 95 ~~~~~~~~~~-~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~--~gp~Ly~idp~G~~~~~~-~~a~G~~~~ 170 (249)
+++.|++.++ .+++++.+|+++++.++.++ +++.|||+|++|++|||+ .||+||.+||+|++.+++ ++|+|++++
T Consensus 81 ~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~ 159 (228)
T TIGR03691 81 YADMRGYSYDRRDVTGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTE 159 (228)
T ss_pred HHHHHhhhcCCCCccHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChH
Confidence 9999999998 68999999998888877666 567899999999999984 689999999999999976 899999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHhh--hccCCCCceEEEEEEEeCC-CCcEEeCCHHHHHHHH
Q 025676 171 AAKTEIEKLKLSEMTCRQGVIEVAKIIYGVH--DEAKDKAFELEMSWVCDES-NRQHQKVPDELLEEAK 236 (249)
Q Consensus 171 ~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~--~~~~~~~~~iei~iv~~~~-~~~~~~~~~~ei~~~~ 236 (249)
.++++||++|+++||++||++++++||..+. +++......+||++|+++. .+.|++++++||++++
T Consensus 160 ~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 160 PIATALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALERLL 228 (228)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHhhC
Confidence 9999999999999999999999999999995 4445667779999999643 2459999999999874
No 22
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=1.5e-45 Score=312.15 Aligned_cols=206 Identities=18% Similarity=0.265 Sum_probs=186.1
Q ss_pred cCCcEEEEEeCCEEEEEEEccCCCCCcc-CCCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHH
Q 025676 33 NSGTVIGIKCKDGIVMGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKE 111 (249)
Q Consensus 33 ~G~t~Igi~~~dgVvla~d~~~~~~~~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 111 (249)
+|+|+|||+++||||||+|++.+++.++ .++.+|||+|++|++|+++|..+|++.+.+++|.+++.|+++++++|+++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4899999999999999999999986555 456899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccccceeeEEEEEeC--CCcEEEEECCCC-ceeeecEEEecCChHHHHHHHHhcCCCCCCHHH
Q 025676 112 LAQRVASYVHLCTLYWWLRPFGCGVILGGYDR--DGPQLYMIEPSG-ISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQ 188 (249)
Q Consensus 112 la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~--~gp~Ly~idp~G-~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~e 188 (249)
++++|++++|.++ ...+|||+|++||||||+ ++|+||.+||+| ++..++++|+|+|+.+++++||+.|+++||++|
T Consensus 81 la~~ls~~~~~~~-~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~ee 159 (219)
T TIGR03690 81 KANRLAAMVRGNL-PAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDD 159 (219)
T ss_pred HHHHHHHHHHhhh-hhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHH
Confidence 9999999999877 455899999999999995 579999999999 577789999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCce-------EEEEEEEeCCCCcEEeCCHHHHHHHHHHHHHh
Q 025676 189 GVIEVAKIIYGVHDEAKDKAFE-------LEMSWVCDESNRQHQKVPDELLEEAKAAARAA 242 (249)
Q Consensus 189 ai~l~~~~l~~~~~~~~~~~~~-------iei~iv~~~~~~~~~~~~~~ei~~~~~~~~~~ 242 (249)
|++++++||..+.+++...+.. +||++|+++ .++.++++||++++++...+
T Consensus 160 ai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~---g~~~l~~~ei~~~~~~~~~~ 217 (219)
T TIGR03690 160 ALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITAD---GARRVPESELEELARAIVES 217 (219)
T ss_pred HHHHHHHHHHHHHhcccccCCcccccccccEEEEEccC---ceEEcCHHHHHHHHHHHHhc
Confidence 9999999999999987433332 389999643 39999999999999876543
No 23
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=5.9e-45 Score=312.97 Aligned_cols=204 Identities=16% Similarity=0.178 Sum_probs=188.4
Q ss_pred hhhcCCcEEEEEeCCEEEEEEEccCCCCCcc-CCCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCC
Q 025676 30 AVDNSGTVIGIKCKDGIVMGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIP 108 (249)
Q Consensus 30 a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 108 (249)
.+++|+|+|||+++||||||+|++.+.+.++ .++.+|||+|++|++|+++|..+|++.+.+++|.+++.|++++|++|+
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 5678999999999999999999999976655 456799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccccee--eEEEEEeCCCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCH
Q 025676 109 VKELAQRVASYVHLCTLYWWLRPFGCG--VILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 186 (249)
Q Consensus 109 ~~~la~~ls~~~~~~t~~~~~rp~~vs--~il~G~d~~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~ 186 (249)
++.+|++|++++|.+ ||++++ +|+||+|++||+||++||+|++.+++++|+|+|+.+++++||+.|+++||+
T Consensus 115 v~~la~~ls~~l~~~------R~~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~ 188 (247)
T PTZ00488 115 VAAASKILANIVWNY------KGMGLSMGTMICGWDKKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLND 188 (247)
T ss_pred HHHHHHHHHHHHHhc------CCCCeeEEEEEEEEeCCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCH
Confidence 999999999999765 565554 799999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHHHh
Q 025676 187 RQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAA 242 (249)
Q Consensus 187 ~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~~~ 242 (249)
+||++++++||+.+.+|+..++..++|++|+++ .++.++++||+++++.+...
T Consensus 189 eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~---g~~~l~~~ei~~~l~~~~~~ 241 (247)
T PTZ00488 189 EEAQDLGRRAIYHATFRDAYSGGAINLYHMQKD---GWKKISADDCFDLHQKYAAE 241 (247)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEEcCC---ccEECCHHHHHHHHHHHhhh
Confidence 999999999999999998788888999999864 28999999999999876543
No 24
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.4e-45 Score=302.67 Aligned_cols=185 Identities=17% Similarity=0.168 Sum_probs=172.8
Q ss_pred cCCcEEEEEeCCEEEEEEEccCCCCCcc-CCCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHH-HhHHHhCCCCCHH
Q 025676 33 NSGTVIGIKCKDGIVMGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEAT-NYESVYGEPIPVK 110 (249)
Q Consensus 33 ~G~t~Igi~~~dgVvla~d~~~~~~~~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~ 110 (249)
.|+|+|||+++||||||+|++.+++.++ .+..+|||+|++|++|+++|..+|++.+.+++|.+++ .|+++++.+|+++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 4899999999999999999999865544 4567999999999999999999999999999999987 5678899999999
Q ss_pred HHHHHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCC--CCCHH
Q 025676 111 ELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLS--EMTCR 187 (249)
Q Consensus 111 ~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~--~ls~~ 187 (249)
.+++++++.+ |++++++|||+|++|+||||+ .||+||++||+|++.+++++|+|+|+.+++++||+.|++ +||++
T Consensus 81 ~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~e 158 (197)
T cd03760 81 EIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEE 158 (197)
T ss_pred HHHHHHHHHH--HHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHH
Confidence 9999999985 788888999999999999997 789999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhhhccCCCCceEEEEEEEeC
Q 025676 188 QGVIEVAKIIYGVHDEAKDKAFELEMSWVCDE 219 (249)
Q Consensus 188 eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~ 219 (249)
||++++.+||+.+.+|+..++..+||++|+++
T Consensus 159 ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~ 190 (197)
T cd03760 159 EARALIEECMKVLYYRDARSINKYQIAVVTKE 190 (197)
T ss_pred HHHHHHHHHHHHHHHhccccCCceEEEEECCC
Confidence 99999999999999998778888999999875
No 25
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.4e-44 Score=297.21 Aligned_cols=181 Identities=15% Similarity=0.210 Sum_probs=172.2
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCccC-CCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELA 113 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (249)
+|+|||+++||||||+|++.+++.++. +..+|||+|++|++|+++|..+|++.+.+++|.+++.|++++|++|+++.+|
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999999976665 4679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCHHHHHHHH
Q 025676 114 QRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEV 193 (249)
Q Consensus 114 ~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l~ 193 (249)
+++++++|.+++ +||+|++||||||++||+||++||+|++.+++++|+|+|+.+++++||+.|+++||++||++++
T Consensus 81 ~~ls~~l~~~~~----~~~~v~~li~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~ 156 (188)
T cd03761 81 KLLSNMLYQYKG----MGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLA 156 (188)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEeCCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 999999998864 4899999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCceEEEEEEEeC
Q 025676 194 AKIIYGVHDEAKDKAFELEMSWVCDE 219 (249)
Q Consensus 194 ~~~l~~~~~~~~~~~~~iei~iv~~~ 219 (249)
.+||+.+.+|+..++..++|++|+++
T Consensus 157 ~~~l~~~~~rd~~sg~~~~v~ii~~~ 182 (188)
T cd03761 157 RRAIYHATHRDAYSGGNVNLYHVRED 182 (188)
T ss_pred HHHHHHHHHhcccCCCCeEEEEEcCC
Confidence 99999999998788888999999865
No 26
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.2e-44 Score=299.54 Aligned_cols=183 Identities=22% Similarity=0.280 Sum_probs=173.1
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCcc-CCCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELA 113 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (249)
+|+|||+++||||||+|+|.+.+.++ .++.+|||+|+++++|+++|..+|++.+.+++|.+++.|+++++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999887655 46689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCHHHHHHH
Q 025676 114 QRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIE 192 (249)
Q Consensus 114 ~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l 192 (249)
+++++.+|.|++.. |||+|++|+||||+ .||+||++||+|++.+++++|+|+|+.+++++||+.|+++||++||+++
T Consensus 82 ~~l~~~~~~~~~~~--rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l 159 (193)
T cd03758 82 NFTRRELAESLRSR--TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALEL 159 (193)
T ss_pred HHHHHHHHHHhhcC--CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHH
Confidence 99999999886543 89999999999996 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCceEEEEEEEeC
Q 025676 193 VAKIIYGVHDEAKDKAFELEMSWVCDE 219 (249)
Q Consensus 193 ~~~~l~~~~~~~~~~~~~iei~iv~~~ 219 (249)
+.+||+.+.+|+...+..+||++|+++
T Consensus 160 ~~~a~~~~~~rd~~~~~~i~i~ii~~~ 186 (193)
T cd03758 160 MKKCIKELKKRFIINLPNFTVKVVDKD 186 (193)
T ss_pred HHHHHHHHHHhccccCCceEEEEEcCC
Confidence 999999999998888888999999865
No 27
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2e-44 Score=300.25 Aligned_cols=183 Identities=13% Similarity=0.171 Sum_probs=171.9
Q ss_pred cCCcEEEEEeCCEEEEEEEccCCCCCccCC-CCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHH
Q 025676 33 NSGTVIGIKCKDGIVMGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKE 111 (249)
Q Consensus 33 ~G~t~Igi~~~dgVvla~d~~~~~~~~~~~-~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 111 (249)
+|+|+|||+++||||||+|++.++++++.+ +.+|||+|++|++|+++|..+|++.+.+.+|.+++.|+++++.+|+++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 699999999999999999999999998865 5799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceeeec-EEEecCChHHHHHHHHhcCCCCCCHHHH
Q 025676 112 LAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYF-GAAIGKGRQAAKTEIEKLKLSEMTCRQG 189 (249)
Q Consensus 112 la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~~~-~~a~G~~~~~~~~~Le~~~~~~ls~~ea 189 (249)
+|++|++.+ |+++ .+||+|++||||||+ .||+||++||+|++.+++ ++|+|+|++.++++||+.|+++||++||
T Consensus 82 la~~l~~~l--y~~r--~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 157 (195)
T cd03759 82 FSSLISSLL--YEKR--FGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDEL 157 (195)
T ss_pred HHHHHHHHH--HHhc--CCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHH
Confidence 999999988 4443 579999999999995 569999999999998887 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCceEEEEEEEeC
Q 025676 190 VIEVAKIIYGVHDEAKDKAFELEMSWVCDE 219 (249)
Q Consensus 190 i~l~~~~l~~~~~~~~~~~~~iei~iv~~~ 219 (249)
++++++||+.+.+|+..++..+||++|+++
T Consensus 158 ~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~ 187 (195)
T cd03759 158 FETISQALLSAVDRDALSGWGAVVYIITKD 187 (195)
T ss_pred HHHHHHHHHHHHhhCcccCCceEEEEEcCC
Confidence 999999999999998788888999999865
No 28
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.1e-44 Score=304.33 Aligned_cols=207 Identities=15% Similarity=0.106 Sum_probs=183.8
Q ss_pred cEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEec----CcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCC-CCCHH
Q 025676 36 TVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVH----RHSGMAVAGLAADGRQIVTRAKSEATNYESVYGE-PIPVK 110 (249)
Q Consensus 36 t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~~~~~ 110 (249)
=+|||+++||||||+|+|+++++...++.+|||+|+ +||+|+++|..+|++.+++++|.+++.|++++|+ +++++
T Consensus 2 ~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~ 81 (236)
T cd03765 2 YCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMF 81 (236)
T ss_pred eEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHH
Confidence 379999999999999999999988777789999998 8999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHH-Hhccccc-----ccccceeeEEEEEe-CCCcEEEEECCCCceeee----cEEEecCChHHHHHHHHhc
Q 025676 111 ELAQRVASYVH-LCTLYWW-----LRPFGCGVILGGYD-RDGPQLYMIEPSGISYRY----FGAAIGKGRQAAKTEIEKL 179 (249)
Q Consensus 111 ~la~~ls~~~~-~~t~~~~-----~rp~~vs~il~G~d-~~gp~Ly~idp~G~~~~~----~~~a~G~~~~~~~~~Le~~ 179 (249)
.+|+++++.++ .++++.+ .|||+|++|+|||| +.||+||++||+|++.++ +++|+|. +++++++||+.
T Consensus 82 ~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek~ 160 (236)
T cd03765 82 DAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDRV 160 (236)
T ss_pred HHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHHh
Confidence 99999999865 4555554 48999999999999 478999999999999998 5689995 79999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHHHhh
Q 025676 180 KLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAAL 243 (249)
Q Consensus 180 ~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~~~~ 243 (249)
|+++||++||++++++||..+.+++..++..|||++|++++-+.-+..-.|+-++++.+....|
T Consensus 161 yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~~~~~~~~~~~~~~~~~~~~~ 224 (236)
T cd03765 161 ITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQVGHYRRIEEDDPYFAMIRKAW 224 (236)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeeeeeeEEecCCCHHHHHHHHHH
Confidence 9999999999999999999999998888889999999987543223344455567888888888
No 29
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=9.9e-44 Score=293.61 Aligned_cols=182 Identities=24% Similarity=0.410 Sum_probs=173.1
Q ss_pred CCcEEEEEeCCEEEEEEEccCCCCCccC-CCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHH
Q 025676 34 SGTVIGIKCKDGIVMGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKEL 112 (249)
Q Consensus 34 G~t~Igi~~~dgVvla~d~~~~~~~~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 112 (249)
|+|+|||+++||||||+|++.+.+.++. +..+|||+|+++++|+++|..+|++.+.++++.+++.|++.++.+++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 7899999999999999999999776665 467999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCHHHHHHH
Q 025676 113 AQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIE 192 (249)
Q Consensus 113 a~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l 192 (249)
++++++.+|.+ ++|||+|++|+||+|++||+||.+||+|++.+++++|+|+++.+++++||+.|+++||++||+++
T Consensus 81 a~~l~~~~~~~----~~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 156 (185)
T TIGR03634 81 ATLLSNILNSN----RFFPFIVQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKL 156 (185)
T ss_pred HHHHHHHHHhc----CCCCeEEEEEEEEEeCCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 99999999876 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCceEEEEEEEeC
Q 025676 193 VAKIIYGVHDEAKDKAFELEMSWVCDE 219 (249)
Q Consensus 193 ~~~~l~~~~~~~~~~~~~iei~iv~~~ 219 (249)
+++||+.+.+++..++..+||++|+++
T Consensus 157 ~~~~l~~~~~r~~~~~~~~~v~ii~~~ 183 (185)
T TIGR03634 157 AVRAIKSAIERDVASGNGIDVAVITKD 183 (185)
T ss_pred HHHHHHHHHHhcccCCCCEEEEEEcCC
Confidence 999999999998788888999999865
No 30
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.6e-43 Score=295.63 Aligned_cols=186 Identities=17% Similarity=0.204 Sum_probs=173.5
Q ss_pred hhcCCcEEEEEeCCEEEEEEEccCCCCCccC-CCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCH
Q 025676 31 VDNSGTVIGIKCKDGIVMGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPV 109 (249)
Q Consensus 31 ~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 109 (249)
+++|+|+|||+++||||||+|++.++++++. +..+|||+|++|++|+++|..+|++.+.+.+|.+++.|++++|++|++
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~ 84 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMST 84 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCH
Confidence 5689999999999999999999999999775 567999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCC-------
Q 025676 110 KELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKL------- 181 (249)
Q Consensus 110 ~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~------- 181 (249)
+.+++++++.++. ++ .|||+|++||||||+ .+|+||++||+|++.+++++|+|+|+.+++++||+.|+
T Consensus 85 ~~la~~ls~~ly~--~R--~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~ 160 (212)
T cd03757 85 EAIAQLLSTILYS--RR--FFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNV 160 (212)
T ss_pred HHHHHHHHHHHHh--hc--CCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcC
Confidence 9999999999853 22 479999999999996 56999999999999999999999999999999999874
Q ss_pred --CCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCC
Q 025676 182 --SEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDES 220 (249)
Q Consensus 182 --~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~ 220 (249)
++||++||++++.+||+.+.+|+..++..+||++|++++
T Consensus 161 ~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g 201 (212)
T cd03757 161 ERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDG 201 (212)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCC
Confidence 899999999999999999999987888889999999763
No 31
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-42 Score=287.00 Aligned_cols=186 Identities=23% Similarity=0.390 Sum_probs=174.4
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCccC-CCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELA 113 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (249)
+|+|||+++||||+|+|++.+++.++. ++.+||++|+++++++++|..+|++.+.+.+|.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999999976665 4679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCHHHHHHHH
Q 025676 114 QRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEV 193 (249)
Q Consensus 114 ~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l~ 193 (249)
+++++.+|.+ ++|||+|++|+||+|++||+||.+||+|++.+++++|+|+|+.+++++||+.|+++|+++||++++
T Consensus 81 ~~i~~~~~~~----~~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~ 156 (188)
T cd03764 81 TLLSNILNSS----KYFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLA 156 (188)
T ss_pred HHHHHHHHhc----CCCCcEEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 9999999875 479999999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeC
Q 025676 194 AKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKV 227 (249)
Q Consensus 194 ~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~ 227 (249)
++||+.+.+|+..++.++||++|++++ ++.+
T Consensus 157 ~~~l~~~~~rd~~~~~~i~i~iv~~~g---~~~~ 187 (188)
T cd03764 157 IRAIKSAIERDSASGDGIDVVVITKDG---YKEL 187 (188)
T ss_pred HHHHHHHHhhcCCCCCcEEEEEECCCC---eEeC
Confidence 999999999987888889999998652 5554
No 32
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.6e-42 Score=286.12 Aligned_cols=180 Identities=21% Similarity=0.268 Sum_probs=170.4
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCccC-CCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELA 113 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (249)
+|+|||+++||||||+|+|.+++.++. +..+|||+|+++++|+++|..+|++.+.+.+|.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 589999999999999999999987665 4679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCHHHHHHHH
Q 025676 114 QRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEV 193 (249)
Q Consensus 114 ~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l~ 193 (249)
+++++.+|.|+ .||+|++|+||+|++||+||.+||+|++.+++++|+|+++..++++||+.|+++||++||++++
T Consensus 81 ~~l~~~l~~~~-----~p~~v~~ivaG~d~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~ 155 (189)
T cd03763 81 TMLKQHLFRYQ-----GHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLV 155 (189)
T ss_pred HHHHHHHHHcC-----CccceeEEEEeEcCCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 99999998763 3999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCceEEEEEEEeC
Q 025676 194 AKIIYGVHDEAKDKAFELEMSWVCDE 219 (249)
Q Consensus 194 ~~~l~~~~~~~~~~~~~iei~iv~~~ 219 (249)
++||+.+.+|+...+..+||++|+++
T Consensus 156 ~~~l~~~~~rd~~~~~~~~v~ii~~~ 181 (189)
T cd03763 156 CEAIEAGIFNDLGSGSNVDLCVITKD 181 (189)
T ss_pred HHHHHHHHHhcCcCCCceEEEEEcCC
Confidence 99999999998777888999999875
No 33
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=4.4e-42 Score=284.25 Aligned_cols=186 Identities=32% Similarity=0.488 Sum_probs=176.4
Q ss_pred hhcCCcEEEEEeCCEEEEEEEccCCCCCcc-CC-CCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCC
Q 025676 31 VDNSGTVIGIKCKDGIVMGVEKLIASKMML-PG-SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIP 108 (249)
Q Consensus 31 ~~~G~t~Igi~~~dgVvla~d~~~~~~~~~-~~-~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 108 (249)
+++|+|+|||+++||||||+|++.+.+..+ .+ ..+|||+|++|++++++|..+|++.+.++++.++..|++.++.+++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 578999999999999999999999977665 33 3699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCC-cEEEEECCCCceeee-cEEEecCChHHHHHHHHhcCCCCCCH
Q 025676 109 VKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRY-FGAAIGKGRQAAKTEIEKLKLSEMTC 186 (249)
Q Consensus 109 ~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~g-p~Ly~idp~G~~~~~-~~~a~G~~~~~~~~~Le~~~~~~ls~ 186 (249)
++.+++.+++.++.+++++++||+++++|+||+|+++ |+||.+||+|++.++ +++|+|+|+++++++||+.|+++||+
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~ 160 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSL 160 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSH
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCH
Confidence 9999999999999999999999999999999999765 999999999999999 69999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCceEEEEEE
Q 025676 187 RQGVIEVAKIIYGVHDEAKDKAFELEMSWV 216 (249)
Q Consensus 187 ~eai~l~~~~l~~~~~~~~~~~~~iei~iv 216 (249)
+||++++.+||+.+.+++..++.++||++|
T Consensus 161 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 161 EEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp HHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 999999999999999998888899999886
No 34
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.2e-42 Score=282.59 Aligned_cols=180 Identities=18% Similarity=0.218 Sum_probs=170.2
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCccC-CCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELA 113 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (249)
+|+|||+++||||||+|++.+++.++. +..+|||+|++|++|+++|..+|++.+.+.++.+++.|+++++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 589999999999999999999976665 4679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCHHHHHHH
Q 025676 114 QRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIE 192 (249)
Q Consensus 114 ~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l 192 (249)
+++++.+|.++ |||+|++||||+|+ +||+||.+||.|++.+++++++|+++.+++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~-----~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l 155 (188)
T cd03762 81 SLFKNLCYNYK-----EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKF 155 (188)
T ss_pred HHHHHHHHhcc-----ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 99999998763 78999999999996 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCceEEEEEEEeC
Q 025676 193 VAKIIYGVHDEAKDKAFELEMSWVCDE 219 (249)
Q Consensus 193 ~~~~l~~~~~~~~~~~~~iei~iv~~~ 219 (249)
+++||+.+.+|+..++..+||++|+++
T Consensus 156 ~~~al~~~~~rd~~~~~~~~i~~i~~~ 182 (188)
T cd03762 156 VKNALSLAMSRDGSSGGVIRLVIITKD 182 (188)
T ss_pred HHHHHHHHHHhccccCCCEEEEEECCC
Confidence 999999999998888888999999865
No 35
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-41 Score=281.00 Aligned_cols=181 Identities=23% Similarity=0.322 Sum_probs=172.9
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCcc-CCCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELA 113 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (249)
+|+|||+++||||||+|++.+.++.+ .+..+|||+|+++++|+++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999999887 56789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCHHHHHHH
Q 025676 114 QRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIE 192 (249)
Q Consensus 114 ~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l 192 (249)
+++++.++.+++ |||++++||||+|+ ++|+||.+||+|++.+++++|+|.++++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~~----~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~ 156 (189)
T cd01912 81 NLLSNILYSYRG----FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVEL 156 (189)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHH
Confidence 999999988764 89999999999997 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCceEEEEEEEeC
Q 025676 193 VAKIIYGVHDEAKDKAFELEMSWVCDE 219 (249)
Q Consensus 193 ~~~~l~~~~~~~~~~~~~iei~iv~~~ 219 (249)
+.+||..+.+++..++.+++|++|+++
T Consensus 157 ~~~~l~~~~~~d~~~~~~~~v~vi~~~ 183 (189)
T cd01912 157 VKKAIDSAIERDLSSGGGVDVAVITKD 183 (189)
T ss_pred HHHHHHHHHHhcCccCCcEEEEEECCC
Confidence 999999999988778888999999865
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=3.6e-41 Score=276.98 Aligned_cols=180 Identities=36% Similarity=0.570 Sum_probs=171.8
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCcc-CCCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELA 113 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (249)
+|+|||+++||||||+|++.+++... .++.+|||+|+++++|+++|..+|++.+.+.++.++..|+++++.+++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999999887 45679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCHHHHHHH
Q 025676 114 QRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIE 192 (249)
Q Consensus 114 ~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l 192 (249)
+++++.+|.+++. +|||++++|+||+|+ .||+||.+||+|++.+++++|+|+++.+++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~~~--~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 158 (182)
T cd01906 81 KLLANLLYEYTQS--LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIEL 158 (182)
T ss_pred HHHHHHHHHhCCC--ccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHH
Confidence 9999999999876 899999999999997 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCceEEEEEE
Q 025676 193 VAKIIYGVHDEAKDKAFELEMSWV 216 (249)
Q Consensus 193 ~~~~l~~~~~~~~~~~~~iei~iv 216 (249)
+++||+.+.+++..++.++||++|
T Consensus 159 ~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 159 ALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHcccCCCCCCEEEEEC
Confidence 999999999997778888998874
No 37
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-36 Score=239.99 Aligned_cols=183 Identities=19% Similarity=0.247 Sum_probs=169.9
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCccCC-CCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELA 113 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~~~-~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (249)
.+++||++.|+|++|+||...++++..+ +.+|++.+++++.|+++|..+|+.++.+++.+.++.|+.++|.+++|...|
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 4789999999999999999999988864 579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCHHHHHHH
Q 025676 114 QRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIE 192 (249)
Q Consensus 114 ~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l 192 (249)
+++++.+.++.+ +.+||.|++++||+|+ .||.||++|..|+..+.++++.|.++.++.++|++.|+++||.+||+.+
T Consensus 82 hFtR~~La~~LR--sr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~l 159 (200)
T KOG0177|consen 82 HFTRRELAESLR--SRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDL 159 (200)
T ss_pred HHHHHHHHHHHh--cCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHH
Confidence 999999998864 3679999999999997 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcc--CCCCceEEEEEEEeCCC
Q 025676 193 VAKIIYGVHDEA--KDKAFELEMSWVCDESN 221 (249)
Q Consensus 193 ~~~~l~~~~~~~--~~~~~~iei~iv~~~~~ 221 (249)
..+|+.++.+|. +..+ +.|.+|++++-
T Consensus 160 mkKCv~El~kRlvin~~~--f~v~IVdkdGi 188 (200)
T KOG0177|consen 160 MKKCVLELKKRLVINLPG--FIVKIVDKDGI 188 (200)
T ss_pred HHHHHHHHHHhcccCCCC--cEEEEEcCCCc
Confidence 999999999996 4445 55788988753
No 38
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-34 Score=239.08 Aligned_cols=187 Identities=21% Similarity=0.282 Sum_probs=175.2
Q ss_pred HHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCC-CCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCC
Q 025676 28 AKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEP 106 (249)
Q Consensus 28 ~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~-~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 106 (249)
.++.+.|+|++|+.++||||+++|+|.+.+.++.+ +..|||.|.++|+|+.+|..+|..++.+.+..+...|+++.++.
T Consensus 31 p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~ 110 (271)
T KOG0173|consen 31 PKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRK 110 (271)
T ss_pred CcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCC
Confidence 46788999999999999999999999999998875 46999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCH
Q 025676 107 IPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTC 186 (249)
Q Consensus 107 ~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~ 186 (249)
++|-...+++.+.+.+| ....++++|+||+|..|||||.+.|.|+...-+|.++|+|+..++++||..|++||++
T Consensus 111 ~rVv~A~~mlkQ~LFrY-----qG~IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt~ 185 (271)
T KOG0173|consen 111 PRVVTALRMLKQHLFRY-----QGHIGAALILGGVDPTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLTK 185 (271)
T ss_pred CceeeHHHHHHHHHHHh-----cCcccceeEEccccCCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccCH
Confidence 99999999999999776 3469999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCceEEEEEEEeC
Q 025676 187 RQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDE 219 (249)
Q Consensus 187 ~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~ 219 (249)
|||++|+.+|+..-...|-.++.+|++++|++.
T Consensus 186 eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~ 218 (271)
T KOG0173|consen 186 EEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKK 218 (271)
T ss_pred HHHHHHHHHHHHhhhccccCCCCceeEEEEeCC
Confidence 999999999999977766667888999999854
No 39
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-34 Score=229.83 Aligned_cols=193 Identities=18% Similarity=0.227 Sum_probs=175.4
Q ss_pred hhcCCcEEEEEeCCEEEEEEEccCCCCCccCCC-CCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCH
Q 025676 31 VDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGS-NRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPV 109 (249)
Q Consensus 31 ~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 109 (249)
..+|+|+|||++.|++|+|+|||.+++..+.+. .+|||+++|+++++.+|+.+|+..|...++...+.|++.++..|++
T Consensus 26 ~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~ 105 (235)
T KOG0179|consen 26 EDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSI 105 (235)
T ss_pred ccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccH
Confidence 679999999999999999999999999988765 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccccceeeEEEEEeCC-CcEEEEECCCCceeeecEEEecCChHHHHHHHHhc-----C---
Q 025676 110 KELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKL-----K--- 180 (249)
Q Consensus 110 ~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~-gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~-----~--- 180 (249)
..+|++|+..++. .++.||.+..||+|+|++ ++.+|+.||.|++.+.-+.|.|+++..++|+|+.. |
T Consensus 106 ~s~A~lls~~LY~----kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e 181 (235)
T KOG0179|consen 106 HSAAQLLSTILYS----KRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLE 181 (235)
T ss_pred HHHHHHHHHHHhh----cccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccc
Confidence 9999999999852 347899999999999984 59999999999999999999999999999999964 2
Q ss_pred ---CCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCC
Q 025676 181 ---LSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 228 (249)
Q Consensus 181 ---~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~ 228 (249)
+..||+++|+.|+.++|..+.+|+-.+++.++|+|+++++- ..+.+|
T Consensus 182 ~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV-~~e~~~ 231 (235)
T KOG0179|consen 182 NAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGV-EVETLP 231 (235)
T ss_pred cCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCE-EEEeee
Confidence 24599999999999999999999988999999999998632 344443
No 40
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-34 Score=227.99 Aligned_cols=201 Identities=16% Similarity=0.175 Sum_probs=185.6
Q ss_pred hhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCC-CceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCC
Q 025676 30 AVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSN-RRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIP 108 (249)
Q Consensus 30 a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~-~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 108 (249)
.+..|+|++|+++++||||++|.|++.+.++.+.+ +|+.+|+|||+||-||..+|.|.+.+.++..+..|..+++.+++
T Consensus 15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 57899999999999999999999999999998876 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCHH
Q 025676 109 VKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR 187 (249)
Q Consensus 109 ~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~ 187 (249)
+...|..++++.++|.. -+.+.+|+||||+ .|.++|.+---|...+.+++.-|+||.++..+++..|+++||+|
T Consensus 95 v~~aA~l~r~~~Y~~re-----~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~E 169 (224)
T KOG0174|consen 95 VHTAASLFREICYNYRE-----MLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLE 169 (224)
T ss_pred HHHHHHHHHHHHHhCHH-----hhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHH
Confidence 99999999999987742 4889999999998 78999999888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHH
Q 025676 188 QGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAK 236 (249)
Q Consensus 188 eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~ 236 (249)
|++.++.+++..+.+|++.++..|-+.+|++++ -.+++++.+++..+.
T Consensus 170 E~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~G-ver~~~~~d~~~~~~ 217 (224)
T KOG0174|consen 170 ECVRFVKNAVSLAIERDGSSGGVIRLVIINKAG-VERRFFPGDKLGQFA 217 (224)
T ss_pred HHHHHHHHHHHHHHhccCCCCCEEEEEEEccCC-ceEEEecCCcccccc
Confidence 999999999999999999999999999999864 357778877766543
No 41
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-33 Score=234.68 Aligned_cols=205 Identities=16% Similarity=0.186 Sum_probs=188.1
Q ss_pred hhcCCcEEEEEeCCEEEEEEEccCCCCCccC-CCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCH
Q 025676 31 VDNSGTVIGIKCKDGIVMGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPV 109 (249)
Q Consensus 31 ~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 109 (249)
..+|+|.+|++++.|||+|+|+|++.+.++. .++.||.+|+++..-+++|..+|+++..+.+.++|..|++++++-|+|
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV 147 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV 147 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence 3589999999999999999999999999986 468999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCHHHH
Q 025676 110 KELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQG 189 (249)
Q Consensus 110 ~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~ea 189 (249)
...++.|+++++.|. ++ -+.+..+|+|||+.||.||++|..|+-...+-.++|+|+.+|..+|+..|++|||.+||
T Consensus 148 saASKllsN~~y~Yk---Gm-GLsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA 223 (285)
T KOG0175|consen 148 SAASKLLSNMVYQYK---GM-GLSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEA 223 (285)
T ss_pred HHHHHHHHHHHhhcc---Cc-chhheeeEeeccCCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHH
Confidence 999999999998774 33 37778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHHHh
Q 025676 190 VIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAA 242 (249)
Q Consensus 190 i~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~~~ 242 (249)
.+|+++++..+..||..++..|.+..|+++ + +..++..++.++.....+.
T Consensus 224 ~~L~rrAI~hAThRDaySGG~vnlyHv~ed-G--W~~v~~~Dv~~L~~~~~e~ 273 (285)
T KOG0175|consen 224 YDLARRAIYHATHRDAYSGGVVNLYHVKED-G--WVKVSNTDVSELHYHYYEV 273 (285)
T ss_pred HHHHHHHHHHHHhcccccCceEEEEEECCc-c--ceecCCccHHHHHHHHHHh
Confidence 999999999999999999999999999865 2 7888888888884444333
No 42
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-33 Score=230.32 Aligned_cols=220 Identities=18% Similarity=0.198 Sum_probs=191.4
Q ss_pred CCcccCCCCcchhhhhH--------HHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccC-CCCCceEEecCcEEEEEecC
Q 025676 11 SVTTFSPDGRVFQIEYA--------AKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGL 81 (249)
Q Consensus 11 ~~t~fspeGrl~Q~eya--------~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~-~~~~Ki~~i~~~i~~~~sG~ 81 (249)
..++|.|-|. +++.| +.++.+|+++||++++||||+|+|+..++|.+.. +.++|+++++||++++++|.
T Consensus 12 a~~~f~~~~~--~m~~a~~~~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGd 89 (256)
T KOG0185|consen 12 APGTFYPSGS--LMENAGDYPIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGD 89 (256)
T ss_pred CCCcCcCccc--hhhhccCCCcccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCcc
Confidence 3577888864 33333 4556789999999999999999999999998876 66899999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhH-HHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceee
Q 025676 82 AADGRQIVTRAKSEATNYE-SVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYR 159 (249)
Q Consensus 82 ~~D~~~l~~~~~~~~~~~~-~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~ 159 (249)
.+|++.+.+.+.+...+.. +..|..+.|+.++.+|...+ |.+++++.|+...++|||+++ ..|.|-.+|..|..++
T Consensus 90 isD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvl--Y~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~ 167 (256)
T KOG0185|consen 90 ISDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVL--YARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYE 167 (256)
T ss_pred HHHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHH--HHhhhccCchhhheeEeeecCCCCeeEEEEeecccccc
Confidence 9999999999998887754 56679999999999999999 677899999999999999998 4599999999999999
Q ss_pred ecEEEecCChHHHHHHHHhcCC---CCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCC---CCcEEeCCHHHHH
Q 025676 160 YFGAAIGKGRQAAKTEIEKLKL---SEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDES---NRQHQKVPDELLE 233 (249)
Q Consensus 160 ~~~~a~G~~~~~~~~~Le~~~~---~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~---~~~~~~~~~~ei~ 233 (249)
.+..|+|.|..++.++|++.|. ++++.+||..++.+||+.+..||+....+++|++|++++ .+++.+-+.+++.
T Consensus 168 ~~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~p~qv~~~W~fa 247 (256)
T KOG0185|consen 168 SPVVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTISKPYQVKTNWDFA 247 (256)
T ss_pred CchhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccceEecCceeeeecchhh
Confidence 9999999999999999999886 579999999999999999999987777789999999864 2345555666554
Q ss_pred H
Q 025676 234 E 234 (249)
Q Consensus 234 ~ 234 (249)
+
T Consensus 248 ~ 248 (256)
T KOG0185|consen 248 E 248 (256)
T ss_pred h
Confidence 4
No 43
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=5.5e-30 Score=204.69 Aligned_cols=161 Identities=34% Similarity=0.476 Sum_probs=154.8
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCcc-CCCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELA 113 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (249)
+|+||++++||||+|+|++.+.+... .....|++.++++++++++|..+|++.+.++++.+++.|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999999887 45679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeee-cEEEecCChHHHHHHHHhcCCCCCCHHHHHHH
Q 025676 114 QRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRY-FGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIE 192 (249)
Q Consensus 114 ~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~-~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l 192 (249)
+.+++.++.+++ +||+++++|++|+|+++|+||.+||.|++.++ +++++|.++..+.++|++.|+++|+.+|++++
T Consensus 81 ~~~~~~~~~~~~---~~p~~~~~iiag~~~~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (164)
T cd01901 81 KELAKLLQVYTQ---GRPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVEL 157 (164)
T ss_pred HHHHHHHHHhcC---CCCcceEEEEEEEcCCCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHH
Confidence 999999999887 79999999999999888999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHH
Q 025676 193 VAKIIY 198 (249)
Q Consensus 193 ~~~~l~ 198 (249)
+.+||.
T Consensus 158 ~~~~l~ 163 (164)
T cd01901 158 ALKALK 163 (164)
T ss_pred HHHHHh
Confidence 999986
No 44
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.97 E-value=2e-30 Score=210.91 Aligned_cols=164 Identities=13% Similarity=0.141 Sum_probs=140.0
Q ss_pred CCcEEEEEeCCEEEEEEEccCCCCCccCCC-CCceEEe-cCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHH
Q 025676 34 SGTVIGIKCKDGIVMGVEKLIASKMMLPGS-NRRIHSV-HRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKE 111 (249)
Q Consensus 34 G~t~Igi~~~dgVvla~d~~~~~~~~~~~~-~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 111 (249)
|+|+|||+++||||||+|+|++.+.++.+. .+||++| +++++|+++|..+|++.|.+.++.+++.|+. +. ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHH
Confidence 689999999999999999999999888654 6999999 9999999999999999999999999999882 22 455
Q ss_pred HHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeee--cEEEecCChHHHHHHHHhcCC-CCCCHHH
Q 025676 112 LAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRY--FGAAIGKGRQAAKTEIEKLKL-SEMTCRQ 188 (249)
Q Consensus 112 la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~--~~~a~G~~~~~~~~~Le~~~~-~~ls~~e 188 (249)
.++.+..+. .....+|+.+.+|++ | .|+||.+||.|+..+. ++.|+|+|+.++.++|++.|+ ++| |
T Consensus 76 ~a~l~~~l~----~~~~~~~l~~~~lv~--d--~~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---e 144 (172)
T PRK05456 76 AVELAKDWR----TDRYLRRLEAMLIVA--D--KEHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---S 144 (172)
T ss_pred HHHHHHHHH----hccCCCccEEEEEEE--c--CCcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---C
Confidence 554443321 112246888999984 3 3799999999999766 899999999999999999999 999 9
Q ss_pred HHHHHHHHHHHhhhccCCCCceEEE
Q 025676 189 GVIEVAKIIYGVHDEAKDKAFELEM 213 (249)
Q Consensus 189 ai~l~~~~l~~~~~~~~~~~~~iei 213 (249)
|++++++|++.+.+|+..++..++|
T Consensus 145 A~~la~kai~~A~~Rd~~sg~~i~v 169 (172)
T PRK05456 145 AEEIAEKALKIAADICIYTNHNITI 169 (172)
T ss_pred HHHHHHHHHHHHHHhCeeCCCcEEE
Confidence 9999999999999998777776655
No 45
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.97 E-value=2.8e-29 Score=202.99 Aligned_cols=163 Identities=13% Similarity=0.078 Sum_probs=137.1
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCccCCC-CCceEEecC-cEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMMLPGS-NRRIHSVHR-HSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKEL 112 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~~~~-~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 112 (249)
+|+|||+++||||||+|+|++.+.++.+. .+||++|++ |++|+++|..+|++.|.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 58999999999999999999999888654 599999999 999999999999999999999999999988774 33
Q ss_pred HHHHHHHHHHhcccccccccc-eeeEEEEEeCCCcEEEEECCCCceeeec--EEEecCChHHHHHHHHhcCCCC-CCHHH
Q 025676 113 AQRVASYVHLCTLYWWLRPFG-CGVILGGYDRDGPQLYMIEPSGISYRYF--GAAIGKGRQAAKTEIEKLKLSE-MTCRQ 188 (249)
Q Consensus 113 a~~ls~~~~~~t~~~~~rp~~-vs~il~G~d~~gp~Ly~idp~G~~~~~~--~~a~G~~~~~~~~~Le~~~~~~-ls~~e 188 (249)
++.+..++ .| ..+|+. +.++++++ ++||.+||.|...+.+ +.++|+|+.++..+||..|+++ ||
T Consensus 76 a~l~~~l~-~~----~~~~~l~a~~iv~~~----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms--- 143 (171)
T cd01913 76 VELAKDWR-TD----RYLRRLEAMLIVADK----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS--- 143 (171)
T ss_pred HHHHHHHH-hc----cCcCceEEEEEEeCC----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---
Confidence 44433321 11 234555 55555433 4999999999999984 9999999999999999999995 99
Q ss_pred HHHHHHHHHHHhhhccCCCCceEEEE
Q 025676 189 GVIEVAKIIYGVHDEAKDKAFELEMS 214 (249)
Q Consensus 189 ai~l~~~~l~~~~~~~~~~~~~iei~ 214 (249)
+.+++.++++.+.+|+..++..|.|-
T Consensus 144 ~~~la~~Av~~A~~rd~~tg~~i~~~ 169 (171)
T cd01913 144 AEEIARKALKIAADICIYTNHNITVE 169 (171)
T ss_pred HHHHHHHHHHHHHhhCcccCCCEEEE
Confidence 55999999999999998888877653
No 46
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.96 E-value=6.7e-29 Score=200.79 Aligned_cols=164 Identities=13% Similarity=0.159 Sum_probs=135.8
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCccCCC-CCceEEe-cCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMMLPGS-NRRIHSV-HRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKEL 112 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~~~~-~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 112 (249)
+|+|||+++||||||+|+|++.+.++.+. .+||++| ++|++|+++|..+|++.|.++++.+++.|+.+. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 58999999999999999999999888755 5999999 599999999999999999999999999987643 3555
Q ss_pred HHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeee--cEEEecCChHHHHHHHHhcC-CCCCCHHHH
Q 025676 113 AQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRY--FGAAIGKGRQAAKTEIEKLK-LSEMTCRQG 189 (249)
Q Consensus 113 a~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~--~~~a~G~~~~~~~~~Le~~~-~~~ls~~ea 189 (249)
++.+++. ..+...+.+.+.+|++|+ ++||.+||.|...++ ++.++|+|+.++..+||..| +++|+ |
T Consensus 76 a~l~~~~----~~~~~~~~l~a~~iv~~~----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a 144 (171)
T TIGR03692 76 VELAKDW----RTDRYLRRLEAMLIVADK----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---A 144 (171)
T ss_pred HHHHHHH----hhcccccccEEEEEEEcC----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---H
Confidence 6665542 111112233366666533 499999999999996 69999999999999999999 57777 9
Q ss_pred HHHHHHHHHHhhhccCCCCceEEEE
Q 025676 190 VIEVAKIIYGVHDEAKDKAFELEMS 214 (249)
Q Consensus 190 i~l~~~~l~~~~~~~~~~~~~iei~ 214 (249)
++++.++++.+.+|+..++..|.|-
T Consensus 145 ~~la~~Av~~A~~rd~~sg~~i~v~ 169 (171)
T TIGR03692 145 EEIAREALKIAADICIYTNHNITIE 169 (171)
T ss_pred HHHHHHHHHHHHhhCccCCCCEEEE
Confidence 9999999999999998888877653
No 47
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.2e-27 Score=184.49 Aligned_cols=184 Identities=14% Similarity=0.155 Sum_probs=169.2
Q ss_pred hcCCcEEEEEeCCEEEEEEEccCCCCCcc-CCCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHH
Q 025676 32 DNSGTVIGIKCKDGIVMGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVK 110 (249)
Q Consensus 32 ~~G~t~Igi~~~dgVvla~d~~~~~~~~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 110 (249)
-+|++++|+++++||.+|+|.|....... .+..+|||+++|+++++.+|+..|++.+.++++.....|+++.+++|.|+
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 47999999999999999999998776554 35579999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceee-ecEEEecCChHHHHHHHHhcCCCCCCHHH
Q 025676 111 ELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYR-YFGAAIGKGRQAAKTEIEKLKLSEMTCRQ 188 (249)
Q Consensus 111 ~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~-~~~~a~G~~~~~~~~~Le~~~~~~ls~~e 188 (249)
.++.++|..+++. ++.||-+..++||+|+ ++|.++.+|..|.... .+|++.|.++....+.+|..|+|+|..++
T Consensus 86 ~~s~mvS~~lYek----RfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~ 161 (204)
T KOG0180|consen 86 TFSSMVSSLLYEK----RFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDE 161 (204)
T ss_pred HHHHHHHHHHHHh----hcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHH
Confidence 9999999999654 3669999999999997 5699999999999876 79999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCceEEEEEEEeC
Q 025676 189 GVIEVAKIIYGVHDEAKDKAFELEMSWVCDE 219 (249)
Q Consensus 189 ai~l~~~~l~~~~~~~~~~~~~iei~iv~~~ 219 (249)
..+.+.++|-.+.+|+..++-...|.+|+++
T Consensus 162 LFetisQa~Lna~DRDalSGwGa~vyiI~kd 192 (204)
T KOG0180|consen 162 LFETISQALLNAVDRDALSGWGAVVYIITKD 192 (204)
T ss_pred HHHHHHHHHHhHhhhhhhccCCeEEEEEccc
Confidence 9999999999999998877866677888775
No 48
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.8e-13 Score=109.95 Aligned_cols=208 Identities=14% Similarity=0.106 Sum_probs=153.5
Q ss_pred cEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEec----CcEEEEEecChhHHHHHHHHHHHHHHHhHH-HhCCCCCHH
Q 025676 36 TVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVH----RHSGMAVAGLAADGRQIVTRAKSEATNYES-VYGEPIPVK 110 (249)
Q Consensus 36 t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~~~~~ 110 (249)
=|||++-..|.|+++|+|+..|.--.+...|+|... .-++++.+|..+-.|.+.+.+.+..+..+- ..-..+++-
T Consensus 3 YCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm~ 82 (255)
T COG3484 3 YCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSMY 82 (255)
T ss_pred eEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhHH
Confidence 489999999999999999988875555566665442 336678899999999999999877752221 111234555
Q ss_pred HHHHHHHHHHHHhccccc------ccccceeeEEEEEeC-CCcEEEEECCCCceee----ecEEEecCChHHHHHHHHhc
Q 025676 111 ELAQRVASYVHLCTLYWW------LRPFGCGVILGGYDR-DGPQLYMIEPSGISYR----YFGAAIGKGRQAAKTEIEKL 179 (249)
Q Consensus 111 ~la~~ls~~~~~~t~~~~------~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~----~~~~a~G~~~~~~~~~Le~~ 179 (249)
..+..+.....+-..+.+ .--|.|++|+||--. ..|.||.|.|.|++.+ .+|.-+|. +.+.+++|++.
T Consensus 83 eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPildR~ 161 (255)
T COG3484 83 EATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILDRT 161 (255)
T ss_pred HHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchhhhhh
Confidence 566666655543322211 125889999999654 3499999999999986 38999995 67899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHHHhhh
Q 025676 180 KLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALE 244 (249)
Q Consensus 180 ~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~~~~~ 244 (249)
+..+++++||.++++-+|....+.+-+.+-+++..++.+++...-+.+--.|=++|+...++-|+
T Consensus 162 i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~~v~~~~ri~edd~Y~a~ir~~W~ 226 (255)
T COG3484 162 ITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSFSVRHTLRIREDDPYFAKIRSLWS 226 (255)
T ss_pred hhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccceeeeeeeEeccCChHHHHHHHHHH
Confidence 99999999999999999999999877788889999998887543333333444566666666554
No 49
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.49 E-value=1.5e-14 Score=77.10 Aligned_cols=23 Identities=78% Similarity=1.255 Sum_probs=22.2
Q ss_pred CCCCCcccCCCCcchhhhhHHHh
Q 025676 8 YDLSVTTFSPDGRVFQIEYAAKA 30 (249)
Q Consensus 8 yd~~~t~fspeGrl~Q~eya~~a 30 (249)
||+++|+|||+|||+|||||.+|
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 89999999999999999999986
No 50
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4.1e-11 Score=94.13 Aligned_cols=169 Identities=14% Similarity=0.147 Sum_probs=121.8
Q ss_pred hcCCcEEEEEeCCEEEEEEEccCCCCCccCCC-CCceEEe-cCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCH
Q 025676 32 DNSGTVIGIKCKDGIVMGVEKLIASKMMLPGS-NRRIHSV-HRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPV 109 (249)
Q Consensus 32 ~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~-~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 109 (249)
.+++|+++++-++-|++|.|..++-|..+.+. ..|+.+| +++++.+++|..+|+..|.+.+..+++.|.
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~--------- 72 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ--------- 72 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc---------
Confidence 36899999999999999999999999877543 2443333 568999999999999999999999998874
Q ss_pred HHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceee--ecEEEecCChHHHHHHHHhcCC-CCCCH
Q 025676 110 KELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYR--YFGAAIGKGRQAAKTEIEKLKL-SEMTC 186 (249)
Q Consensus 110 ~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~--~~~~a~G~~~~~~~~~Le~~~~-~~ls~ 186 (249)
..|.+..-+..+.++.-..+|-+.+-++++ | .-.+|-+...|-..+ ....|||+|..++++--+..+. +++|
T Consensus 73 g~L~raavelaKdwr~Dk~lr~LEAmllVa--d--~~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls- 147 (178)
T COG5405 73 GDLFRAAVELAKDWRTDKYLRKLEAMLLVA--D--KTHILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS- 147 (178)
T ss_pred CcHHHHHHHHHHhhhhhhHHHHHhhheeEe--C--CCcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC-
Confidence 233333333333444333456677777775 3 346788888888776 4699999999999998877653 3565
Q ss_pred HHHHHHHHHHHHHhhhccCCCCceEEEEEE
Q 025676 187 RQGVIEVAKIIYGVHDEAKDKAFELEMSWV 216 (249)
Q Consensus 187 ~eai~l~~~~l~~~~~~~~~~~~~iei~iv 216 (249)
|-+++.++|..+.+-..+++.++.|-.+
T Consensus 148 --A~eIa~~sl~iA~eiciyTN~ni~ve~l 175 (178)
T COG5405 148 --AREIAEKSLKIAGDICIYTNHNIVVEEL 175 (178)
T ss_pred --HHHHHHHHHhhhheEEEecCCcEEEEEe
Confidence 4567777888776654455666555433
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=96.83 E-value=0.13 Score=42.26 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEE
Q 025676 170 QAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVC 217 (249)
Q Consensus 170 ~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~ 217 (249)
+.+...|.+.|++.|+++++.++..++|+.+.........++++...+
T Consensus 131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~ 178 (194)
T PF09894_consen 131 EIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITT 178 (194)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEec
Confidence 667777888999999999999999999999976644444556665544
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.04 E-value=2 Score=36.78 Aligned_cols=171 Identities=16% Similarity=0.160 Sum_probs=97.5
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQ 114 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~ 114 (249)
+.+|+..++||.|+|.|+|. +++-|.-.|-..+-+.+ =.|.--+-+.|++
T Consensus 2 tLviay~gknGaviaGDrR~---------------------i~frgdee~re~lEekL---------YsGeIkteEEL~r 51 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE---------------------ITFRGDEEDREKLEEKL---------YSGEIKTEEELAR 51 (293)
T ss_pred eEEEEEecCCCcEEeccceE---------------------EEEecChhHHHHHHHHh---------hcCccccHHHHHH
Confidence 46899999999999999863 24556666766665544 1344445566776
Q ss_pred HHHHHHHHhccc---ccccccceeeEEEEEeCCC------cEEEEE-------CCCCceee-------ecEEEecCC--h
Q 025676 115 RVASYVHLCTLY---WWLRPFGCGVILGGYDRDG------PQLYMI-------EPSGISYR-------YFGAAIGKG--R 169 (249)
Q Consensus 115 ~ls~~~~~~t~~---~~~rp~~vs~il~G~d~~g------p~Ly~i-------dp~G~~~~-------~~~~a~G~~--~ 169 (249)
...+.--+++-. ...|-..-++++|-+...+ -.+|.+ +..|+-.. ....+.|.. -
T Consensus 52 ~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~~K 131 (293)
T COG4079 52 KAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKFTK 131 (293)
T ss_pred HHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHHHH
Confidence 665543222211 1122233334444343321 334432 22332211 122333311 2
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHH
Q 025676 170 QAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAK 236 (249)
Q Consensus 170 ~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~ 236 (249)
+.+..+|.++|.+.++++++.+....+|..+...-.....++++..++..-. ++.++-.++++.+-
T Consensus 132 e~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d-~~~rl~kkDie~L~ 197 (293)
T COG4079 132 EVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVD-PVLRLVKKDIETLR 197 (293)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcC-HHHHHHHHHHHHHH
Confidence 5567778888999999999999999999998865455556677766654423 34444445555443
No 53
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=80.75 E-value=2.6 Score=32.67 Aligned_cols=82 Identities=10% Similarity=0.082 Sum_probs=60.2
Q ss_pred EEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCC
Q 025676 149 YMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 228 (249)
Q Consensus 149 y~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~ 228 (249)
..+|-+|.+...+|-..|.|+..+.+-+-..|-..+|++||.++--.- +.+..... +|.. ..-.|.
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kIkNte---IAKeL~LP--PVKL---------HCSMLA 136 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKIKNTE---IAKELSLP--PVKL---------HCSMLA 136 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhcccHH---HHHhccCC--chhh---------hhHHHH
Confidence 567889999999999999999999999999999999999998762211 11111211 1111 245688
Q ss_pred HHHHHHHHHHHHHhhh
Q 025676 229 DELLEEAKAAARAALE 244 (249)
Q Consensus 229 ~~ei~~~~~~~~~~~~ 244 (249)
++.|+..+.+.+++-.
T Consensus 137 EDAIKaAikdyk~Kq~ 152 (157)
T KOG3361|consen 137 EDAIKAAIKDYKEKQN 152 (157)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999998887754
No 54
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=55.81 E-value=14 Score=24.44 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=27.6
Q ss_pred cccCC-CCcchhhhhHHHhhhcCCcEEEEEeCC
Q 025676 13 TTFSP-DGRVFQIEYAAKAVDNSGTVIGIKCKD 44 (249)
Q Consensus 13 t~fsp-eGrl~Q~eya~~a~~~G~t~Igi~~~d 44 (249)
|.||+ +|.+..-++...|..+|-..+||.-.+
T Consensus 6 t~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 6 SDYSLLDGALSPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred cCCccccccCCHHHHHHHHHHcCCCEEEEeeCC
Confidence 56888 899999999999999999999998544
No 55
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=46.24 E-value=37 Score=21.47 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=25.9
Q ss_pred EEECCCCceeeecEEEecCChHHHHHHHHhc
Q 025676 149 YMIEPSGISYRYFGAAIGKGRQAAKTEIEKL 179 (249)
Q Consensus 149 y~idp~G~~~~~~~~a~G~~~~~~~~~Le~~ 179 (249)
|.|+|+|.....--...|.+...+...||+.
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~ 33 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEA 33 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHH
Confidence 6789999998877788888888888888764
No 56
>PRK08868 flagellar protein FlaG; Provisional
Probab=45.63 E-value=1.3e+02 Score=23.72 Aligned_cols=56 Identities=9% Similarity=0.087 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhhhcc----CCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHHH
Q 025676 186 CRQGVIEVAKIIYGVHDEA----KDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARA 241 (249)
Q Consensus 186 ~~eai~l~~~~l~~~~~~~----~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~~ 241 (249)
+++|++-+-+.+......+ ......+-|.+++++++...|.+|.|++=.++++..+
T Consensus 73 l~~aVeklNe~~~~~n~~L~F~vdeetgr~VVkViD~~T~EVIRQIP~Ee~L~la~~l~e 132 (144)
T PRK08868 73 LEKMVEQMNEFVKSINKGLSFRVDEESGRDVVTIYEASTGDIIRQIPDEEMLEVLRRLAE 132 (144)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEecCCCCEEEEEEECCCCceeeeCCCHHHHHHHHHHHH
Confidence 4455555556666554332 1122234478899998889999999999888877653
No 57
>PRK08452 flagellar protein FlaG; Provisional
Probab=44.34 E-value=1.4e+02 Score=22.85 Aligned_cols=32 Identities=16% Similarity=0.097 Sum_probs=26.0
Q ss_pred eEEEEEEEeCCCCcEEeCCHHHHHHHHHHHHH
Q 025676 210 ELEMSWVCDESNRQHQKVPDELLEEAKAAARA 241 (249)
Q Consensus 210 ~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~~ 241 (249)
.+-|.+++++++...|.+|+|++=.++++..+
T Consensus 83 ~~vVkVvD~~T~eVIRqIP~Ee~L~l~~~m~e 114 (124)
T PRK08452 83 GLVVSVKEANGGKVIREIPSKEAIELMEYMRD 114 (124)
T ss_pred cEEEEEEECCCCceeeeCCCHHHHHHHHHHHH
Confidence 35577889998889999999998888877654
No 58
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=43.38 E-value=1.2e+02 Score=21.62 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHHHhhhh
Q 025676 181 LSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALEE 245 (249)
Q Consensus 181 ~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~~~~~~ 245 (249)
.+.+|.++..+.+...... ..+.++.|.|++.++. +.-+-+++|+++.++-...+-|+
T Consensus 17 d~~~s~e~L~~~v~~~c~~------~~~q~ft~kw~DEEGD-p~tiSS~~EL~EA~rl~~~n~~~ 74 (83)
T cd06404 17 DPSISLEELCNEVRDMCRF------HNDQPFTLKWIDEEGD-PCTISSQMELEEAFRLYELNKDS 74 (83)
T ss_pred CCCcCHHHHHHHHHHHhCC------CCCCcEEEEEECCCCC-ceeecCHHHHHHHHHHHHhcCcc
Confidence 4567777776665554442 1223467899987754 79999999999999877766543
No 59
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=41.36 E-value=84 Score=22.99 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=24.5
Q ss_pred ceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHHH
Q 025676 209 FELEMSWVCDESNRQHQKVPDELLEEAKAAARA 241 (249)
Q Consensus 209 ~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~~ 241 (249)
..+-|.+++++++...|.+|.|++=.+.++..+
T Consensus 66 ~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l~e 98 (107)
T PF03646_consen 66 GRVVVKVIDKETGEVIRQIPPEELLDLAKRLRE 98 (107)
T ss_dssp TEEEEEEEETTT-SEEEEE-HHHHHHHHHHHHH
T ss_pred CcEEEEEEECCCCcEEEeCCcHHHHHHHHHHHH
Confidence 345578899998888999999998888876654
No 60
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=41.29 E-value=42 Score=21.54 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCc
Q 025676 184 MTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQ 223 (249)
Q Consensus 184 ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~ 223 (249)
-|++||+..|..-|..-.+ .+++-++.+.+.+.
T Consensus 5 kt~eeAi~~A~~~l~~~~~-------~~~~eVi~~g~kGf 37 (52)
T PF14804_consen 5 KTVEEAIEKALKELGVPRE-------ELEYEVIEEGKKGF 37 (52)
T ss_dssp SSHHHHHHHHHHHTT--GG-------GEEEEEEE--B---
T ss_pred CCHHHHHHHHHHHhCCChH-------HEEEEEEEcCCCcE
Confidence 3788888887776654433 36666777644333
No 61
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=39.50 E-value=17 Score=22.65 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=23.0
Q ss_pred ecCChHHHHHHHHhcC-CCCCCHHHHHHHHHHH
Q 025676 165 IGKGRQAAKTEIEKLK-LSEMTCRQGVIEVAKI 196 (249)
Q Consensus 165 ~G~~~~~~~~~Le~~~-~~~ls~~eai~l~~~~ 196 (249)
-|+....+...+++.. .++++.++.++.+++.
T Consensus 13 LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 13 LGYSKAEAQKAVSKLLEKPGMDVEELIKQALKL 45 (47)
T ss_dssp TTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhh
Confidence 4777788888887765 7889999988876653
No 62
>PRK07738 flagellar protein FlaG; Provisional
Probab=39.10 E-value=1.7e+02 Score=22.21 Aligned_cols=56 Identities=16% Similarity=0.133 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhhhcc----CCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHHH
Q 025676 186 CRQGVIEVAKIIYGVHDEA----KDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARA 241 (249)
Q Consensus 186 ~~eai~l~~~~l~~~~~~~----~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~~ 241 (249)
++++++-+-+.+....... ......+-|.+++++++...|.+|.+++=.++++..+
T Consensus 48 l~~aveklN~~l~~~~~~L~F~vdeet~~~vVkVvD~~T~EVIRQIPpEe~L~l~~~m~e 107 (117)
T PRK07738 48 LEEVVDGMNELLEPSQTSLKFELHEKLNEYYVQVVDERTNEVIREIPPKKLLDMYAAMME 107 (117)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCeeeeeCCCHHHHHHHHHHHH
Confidence 3445555555555433221 1122345578899998889999999999888887665
No 63
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=35.21 E-value=27 Score=26.49 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=17.7
Q ss_pred CCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEE
Q 025676 10 LSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMG 49 (249)
Q Consensus 10 ~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla 49 (249)
....+|||+|. -|++.|+|.|+--
T Consensus 70 tHvHvfSpDG~----------------~lSFTYNDhVmhe 93 (122)
T PF12566_consen 70 THVHVFSPDGS----------------WLSFTYNDHVMHE 93 (122)
T ss_pred ccceEECCCCC----------------EEEEEecchhhcc
Confidence 45678999995 6777788877643
No 64
>PRK04081 hypothetical protein; Provisional
Probab=32.66 E-value=62 Score=26.94 Aligned_cols=27 Identities=7% Similarity=0.206 Sum_probs=21.8
Q ss_pred eCCCCcEEeCCHHHHHHHHHHHHHhhh
Q 025676 218 DESNRQHQKVPDELLEEAKAAARAALE 244 (249)
Q Consensus 218 ~~~~~~~~~~~~~ei~~~~~~~~~~~~ 244 (249)
++-++..|+|++||++.++++-..|.|
T Consensus 77 r~~dG~ER~LS~eE~dkLi~eE~~KId 103 (207)
T PRK04081 77 RDLDGTERVLSQEEIDKLIKEEEAKID 103 (207)
T ss_pred ecCCCcccccCHHHHHHHHHHHHHhhc
Confidence 343456899999999999999887765
No 65
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=30.74 E-value=47 Score=25.85 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=25.6
Q ss_pred cccC-CCCcchhhhhHHHhhhcCCcEEEEEe
Q 025676 13 TTFS-PDGRVFQIEYAAKAVDNSGTVIGIKC 42 (249)
Q Consensus 13 t~fs-peGrl~Q~eya~~a~~~G~t~Igi~~ 42 (249)
|.|| ++|....-|++..|..+|-+.|||.-
T Consensus 7 T~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTD 37 (175)
T PF02811_consen 7 TKYSILDGKDSPEEYVEQAKEKGLDAIAITD 37 (175)
T ss_dssp -TTTSSTSSSSHHHHHHHHHHTTESEEEEEE
T ss_pred ccCcchhhcCCHHHHHHHHHHcCCCEEEEcC
Confidence 4588 79999889999999999999999873
No 66
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=30.22 E-value=64 Score=26.79 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeC
Q 025676 106 PIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR 143 (249)
Q Consensus 106 ~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~ 143 (249)
.-+|++.+..|+++++.|.++++.+.+ +|+|+.-
T Consensus 44 ~rtP~~~a~Dl~~~i~~y~~~w~~~~v----vLiGYSF 77 (192)
T PF06057_consen 44 ERTPEQTAADLARIIRHYRARWGRKRV----VLIGYSF 77 (192)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCceE----EEEeecC
Confidence 457899999999999999988766543 6778753
No 67
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=28.03 E-value=1.1e+02 Score=20.65 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHH
Q 025676 89 VTRAKSEATNYESVYGEPIPVKELAQRVASYV 120 (249)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~ 120 (249)
.+.+++-........|++++.+.+|..+.--.
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgis~ 34 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGISV 34 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS-H
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHcccH
Confidence 34455556667778999999999999875433
No 68
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=27.40 E-value=87 Score=19.07 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=21.8
Q ss_pred cccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEE
Q 025676 13 TTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMG 49 (249)
Q Consensus 13 t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla 49 (249)
.+-.|+|++.|+.. |-.-|.+.+..|+|+.
T Consensus 4 Gii~~dG~~~q~~~-------~~a~ivl~GpSG~v~s 33 (40)
T PF08140_consen 4 GIITPDGTNVQFPH-------GVANIVLIGPSGAVLS 33 (40)
T ss_pred ceECCCCCEEECCc-------ccceEEEECCceEEee
Confidence 45679999999843 3335777888888875
No 69
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=26.78 E-value=75 Score=25.87 Aligned_cols=35 Identities=29% Similarity=0.292 Sum_probs=24.4
Q ss_pred cCCCCcchhhhhHH-HhhhcCCcEEEEEeCCEEEEE
Q 025676 15 FSPDGRVFQIEYAA-KAVDNSGTVIGIKCKDGIVMG 49 (249)
Q Consensus 15 fspeGrl~Q~eya~-~a~~~G~t~Igi~~~dgVvla 49 (249)
+||-|.-.-|--|. +|..+|-++||+.++||=-++
T Consensus 116 ISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~ 151 (176)
T COG0279 116 ISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLA 151 (176)
T ss_pred EeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccc
Confidence 45555544444444 456799999999999987665
No 70
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=26.03 E-value=27 Score=25.58 Aligned_cols=8 Identities=63% Similarity=1.352 Sum_probs=4.7
Q ss_pred ccCCCCcc
Q 025676 14 TFSPDGRV 21 (249)
Q Consensus 14 ~fspeGrl 21 (249)
.|||||||
T Consensus 19 efs~DGkL 26 (109)
T COG4831 19 EFSPDGKL 26 (109)
T ss_pred eeCCCCce
Confidence 46666655
No 71
>PRK09732 hypothetical protein; Provisional
Probab=24.84 E-value=1.8e+02 Score=22.58 Aligned_cols=34 Identities=6% Similarity=0.002 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeC
Q 025676 182 SEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDE 219 (249)
Q Consensus 182 ~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~ 219 (249)
..||++.|.+++..++..+.+. +.++-|++|+..
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~ 38 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDG 38 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCC
Confidence 5699999999999999998886 346788888754
No 72
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.08 E-value=1.8e+02 Score=20.78 Aligned_cols=32 Identities=9% Similarity=0.224 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhh
Q 025676 170 QAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVH 201 (249)
Q Consensus 170 ~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~ 201 (249)
..+..+|++.-.+++|+++.+++=..++..+.
T Consensus 32 erakeiLe~LndpeisL~eSvkLYkeG~~lL~ 63 (86)
T PRK14065 32 HSLEQAIDRLNDPNLSLKDGMDLYKTAMQELF 63 (86)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 45677788877888888888887555555443
No 73
>PRK07328 histidinol-phosphatase; Provisional
Probab=23.60 E-value=84 Score=27.10 Aligned_cols=30 Identities=20% Similarity=0.080 Sum_probs=26.2
Q ss_pred cccCCCCcchhhhhHHHhhhcCCcEEEEEe
Q 025676 13 TTFSPDGRVFQIEYAAKAVDNSGTVIGIKC 42 (249)
Q Consensus 13 t~fspeGrl~Q~eya~~a~~~G~t~Igi~~ 42 (249)
|.||++|.-.--|++.+|+.+|-+.|||.-
T Consensus 10 T~~s~~~~~~~ee~v~~A~~~Gl~~i~~Td 39 (269)
T PRK07328 10 TPLCGHAVGTPEEYVQAARRAGLKEIGFTD 39 (269)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCEEEEec
Confidence 569999887777899999999999999974
No 74
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=23.46 E-value=79 Score=26.92 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=25.6
Q ss_pred cccCCCCcchhhhhHHHhhhcCCcEEEEE
Q 025676 13 TTFSPDGRVFQIEYAAKAVDNSGTVIGIK 41 (249)
Q Consensus 13 t~fspeGrl~Q~eya~~a~~~G~t~Igi~ 41 (249)
|.|| +|...-.|++..|..+|-..+++.
T Consensus 9 T~~s-dg~~~~~e~~~~A~~~g~~~~~iT 36 (237)
T COG1387 9 TVFS-DGEATPEEMVEAAIELGLEYIAIT 36 (237)
T ss_pred cccc-cCCCCHHHHHHHHHHcCCeEEEEe
Confidence 6799 999999999999999999988876
No 75
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=23.36 E-value=74 Score=23.58 Aligned_cols=16 Identities=31% Similarity=0.955 Sum_probs=13.4
Q ss_pred CCcEEEEECCCCceee
Q 025676 144 DGPQLYMIEPSGISYR 159 (249)
Q Consensus 144 ~gp~Ly~idp~G~~~~ 159 (249)
++|+||++||.+....
T Consensus 36 d~PrL~Yvdp~~~~~K 51 (104)
T PF14593_consen 36 DGPRLFYVDPKKMVLK 51 (104)
T ss_dssp TTTEEEEEETTTTEEE
T ss_pred cCCEEEEEECCCCeEC
Confidence 5799999999987654
No 76
>PF12392 DUF3656: Collagenase ; InterPro: IPR020988 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This domain is found in a number of proteins belonging to the MEROPS peptidase family U32. Peptidase family U32 contains endopeptidases, including collagenase, from bacteria.
Probab=22.38 E-value=3.3e+02 Score=20.22 Aligned_cols=97 Identities=19% Similarity=0.103 Sum_probs=54.1
Q ss_pred ccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCC
Q 025676 129 LRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKA 208 (249)
Q Consensus 129 ~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~ 208 (249)
.|...|.+-+-+-....+.|-..|..|...++ .|. ..++.--+..++.+...+ .|. ..+.+.
T Consensus 21 ~~k~~v~~~~~~~~g~p~~l~~~d~~~~~v~~----~~~------~~~e~A~~~p~~~e~i~~----ql~----KlG~T~ 82 (122)
T PF12392_consen 21 ERKIPVDLKLSAKKGEPLKLTLSDEDGNSVEV----TSE------IVPEPAKKRPLDEERIRK----QLS----KLGNTP 82 (122)
T ss_pred cceEeEEEEEEEecCCCEEEEEEECCCcEEEE----Eec------CCchhhCCCccCHHHHHH----HHH----hhCCCc
Confidence 44455555444333345677777788875542 221 123333344555543322 222 235556
Q ss_pred ceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHHHhhhhc
Q 025676 209 FELEMSWVCDESNRQHQKVPDELLEEAKAAARAALEEM 246 (249)
Q Consensus 209 ~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~ 246 (249)
|.++=..+.-+. --.+|-.+++++-+++.++|+++
T Consensus 83 F~~~~i~i~~~~---~lFlP~s~LN~lRRea~e~L~~~ 117 (122)
T PF12392_consen 83 FELENIEIDLDE---GLFLPISELNELRREAVEKLEEK 117 (122)
T ss_pred EEEEEEEEEcCC---CEEEEHHHHHHHHHHHHHHHHHH
Confidence 654333334332 26789999999999999999874
No 77
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=22.21 E-value=78 Score=29.87 Aligned_cols=62 Identities=13% Similarity=0.063 Sum_probs=41.4
Q ss_pred eeeEEEEEeCCCcEEEEECCCCceeeecEEEecCChHHHHHHHHhc---CCCCCCHHHHHHHHHHH
Q 025676 134 CGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKL---KLSEMTCRQGVIEVAKI 196 (249)
Q Consensus 134 vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~---~~~~ls~~eai~l~~~~ 196 (249)
+.+|+||.|..+. +-...+.-.-......++|.....+...|++. +...-++++|+..+.+.
T Consensus 346 v~lI~GG~~Kg~d-f~~L~~~~~~~~~~~~~~G~~~~~i~~~l~~~~~~~~~~~~le~Av~~a~~~ 410 (448)
T COG0771 346 VILIAGGDDKGAD-FSPLAEILAKVIKKLVLIGEDAEKIAAALKEAGPSLVICETLEEAVQLAREL 410 (448)
T ss_pred EEEEECCCCCCCC-hhHHHHHhhhcceEEEEeCCCHHHHHHHHHhcCCceeecCcHHHHHHHHHHh
Confidence 6778888875433 22222222222346889999999999999876 56677888888876554
No 78
>PRK06361 hypothetical protein; Provisional
Probab=21.93 E-value=94 Score=25.56 Aligned_cols=30 Identities=30% Similarity=0.293 Sum_probs=26.9
Q ss_pred cccCCCCcchhhhhHHHhhhcCCcEEEEEeC
Q 025676 13 TTFSPDGRVFQIEYAAKAVDNSGTVIGIKCK 43 (249)
Q Consensus 13 t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~ 43 (249)
|.|| +|+..--|++..|...|-..|||..-
T Consensus 3 t~~s-dg~~~~~e~v~~A~~~Gl~~i~iTDH 32 (212)
T PRK06361 3 TIFS-DGELIPSELVRRARVLGYRAIAITDH 32 (212)
T ss_pred cccc-CCCCCHHHHHHHHHHcCCCEEEEecC
Confidence 6788 89999999999999999999999854
No 79
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=21.67 E-value=1.1e+02 Score=23.26 Aligned_cols=34 Identities=6% Similarity=0.016 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeC
Q 025676 182 SEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDE 219 (249)
Q Consensus 182 ~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~ 219 (249)
|.+|+++|.+++..+++.+.++ +.++-|+||+..
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~----g~~v~iaVvd~~ 34 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARER----GLPVSIAVVDAG 34 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHT----T---EEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHHHHHh----CCCeEEEEEECC
Confidence 3578999999999999999987 333667777754
No 80
>COG1986 Inosine/xanthosine triphosphatase [Nucleotide transport and metabolism]
Probab=21.52 E-value=2.4e+02 Score=23.01 Aligned_cols=40 Identities=30% Similarity=0.371 Sum_probs=30.3
Q ss_pred eEEEEEEEeCCCCcEEeC-CHHHHHHHHHHHHHhhhhccCC
Q 025676 210 ELEMSWVCDESNRQHQKV-PDELLEEAKAAARAALEEMDAD 249 (249)
Q Consensus 210 ~iei~iv~~~~~~~~~~~-~~~ei~~~~~~~~~~~~~~~~~ 249 (249)
+++|.-++.+++-+-+.+ .+|-.+-.+.+|+.+|+.-|+|
T Consensus 27 ~~~v~~v~v~sgv~~QPfg~eeT~~GA~nRA~~A~~~~~~d 67 (175)
T COG1986 27 NVEVVGVAVDSGVPPQPFGDEETVQGARNRAKNALRAVDAD 67 (175)
T ss_pred ceEEEEeccCCCCCCCCcChHHHHHHHHHHHHHHHhhcCCc
Confidence 356655666666566777 7888999999999999866665
No 81
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=21.03 E-value=83 Score=31.48 Aligned_cols=40 Identities=18% Similarity=0.454 Sum_probs=30.5
Q ss_pred CCCCCcccCCCCcch-------hhhhHHHh-hhcCCcEEEEEeCCEEE
Q 025676 8 YDLSVTTFSPDGRVF-------QIEYAAKA-VDNSGTVIGIKCKDGIV 47 (249)
Q Consensus 8 yd~~~t~fspeGrl~-------Q~eya~~a-~~~G~t~Igi~~~dgVv 47 (249)
|+..+-+|+|.|++. .+.+|..- ..-|..|+|.+-++-+|
T Consensus 384 ~~d~v~VfTP~G~v~~LP~GaT~lDFAY~iHt~iG~~c~gAkVNg~~v 431 (702)
T PRK11092 384 FPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPY 431 (702)
T ss_pred ccceEEEECCCCCEEeCCCCCchhhhhHhhCchhhceeEEEEECCEEC
Confidence 455678999999987 45566655 56799999999876665
No 82
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=20.69 E-value=1.7e+02 Score=18.48 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=21.3
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHhhhc
Q 025676 173 KTEIEKLKLSEMTCRQGVIEVAKIIYGVHDE 203 (249)
Q Consensus 173 ~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~ 203 (249)
..++++.-++++|+++++++-.+++..+..+
T Consensus 9 e~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c 39 (53)
T PF02609_consen 9 EEIVEKLESGELSLDESLKLYEEGMELIKKC 39 (53)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3455555678999999999988888776554
No 83
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=20.52 E-value=98 Score=26.43 Aligned_cols=30 Identities=17% Similarity=0.077 Sum_probs=26.3
Q ss_pred cccCCCCcchhhhhHHHhhhcCCcEEEEEe
Q 025676 13 TTFSPDGRVFQIEYAAKAVDNSGTVIGIKC 42 (249)
Q Consensus 13 t~fspeGrl~Q~eya~~a~~~G~t~Igi~~ 42 (249)
|.||++|+-.--||+..|+++|-+.|||.-
T Consensus 7 t~~s~d~~~~~ee~v~~A~~~Gl~~i~~Td 36 (253)
T TIGR01856 7 SPFCAHGTDTLEEVVQEAIQLGFEEICFTE 36 (253)
T ss_pred cCCCCCCCCCHHHHHHHHHHcCCCEEEecC
Confidence 469999987777899999999999999974
No 84
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.45 E-value=72 Score=23.05 Aligned_cols=14 Identities=29% Similarity=0.695 Sum_probs=11.4
Q ss_pred CCcEEEEECCCCce
Q 025676 144 DGPQLYMIEPSGIS 157 (249)
Q Consensus 144 ~gp~Ly~idp~G~~ 157 (249)
++|+|+++||.--.
T Consensus 24 d~PrL~yvdp~~~~ 37 (89)
T cd01262 24 NGPRLIYVDPVKKV 37 (89)
T ss_pred cCceEEEEcCCcCe
Confidence 58999999998443
No 85
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=20.34 E-value=52 Score=26.89 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=37.7
Q ss_pred cEEEEEeCCE-EEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhHHHHHHHHHHH
Q 025676 36 TVIGIKCKDG-IVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKS 94 (249)
Q Consensus 36 t~Igi~~~dg-Vvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~ 94 (249)
.+||....+| +-+.+....+..-++..-.+.|-+.++++++++.|..-|..++.++++.
T Consensus 27 i~Is~~~~~g~~~~~~~~~~~E~~lL~~F~~~i~~~dPd~i~gyN~~~FDlpyl~~Ra~~ 86 (188)
T cd05781 27 IVISLATSNGDVEFILAEGLDDRKIIREFVKYVKEYDPDIIVGYNSNAFDWPYLVERARV 86 (188)
T ss_pred EEEEEEeCCCCEEEEEecCCCHHHHHHHHHHHHHHcCCCEEEecCCCcCcHHHHHHHHHH
Confidence 3455555443 3333333223333333335677778899999999999999999998864
No 86
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=20.16 E-value=4.9e+02 Score=21.27 Aligned_cols=68 Identities=13% Similarity=0.248 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEecC
Q 025676 88 IVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 167 (249)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~G~ 167 (249)
|.++.|+.-..-+..-+.+++.+.+|..|++.+. ..+|-++..|....+.+ ..+.
T Consensus 2 LLeKtRkIN~lLQ~~~~~~v~F~~ia~vL~dvl~------------------------aNvyIis~kGkiLGy~~-~~~~ 56 (177)
T PF06018_consen 2 LLEKTRKINRLLQKSAGEPVDFNDIAEVLSDVLE------------------------ANVYIISRKGKILGYSF-IDDF 56 (177)
T ss_dssp HHHHHHHHHHHHHSHTTSS--HHHHHHHHHHHHT------------------------SEEEEEETTSBEEEEE--SS--
T ss_pred hHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhc------------------------CcEEEEeCCccEEEEec-cCCC
Confidence 3445554444444457889999999999999863 13577777777776543 3555
Q ss_pred ChHHHHHHHHhcC
Q 025676 168 GRQAAKTEIEKLK 180 (249)
Q Consensus 168 ~~~~~~~~Le~~~ 180 (249)
.+.....+++...
T Consensus 57 ~~~~~~~~~~~~~ 69 (177)
T PF06018_consen 57 ECDRMEEMLEEKR 69 (177)
T ss_dssp --HHHHHHHHHTB
T ss_pred CcHHHHHHHhcCc
Confidence 5666666776554
No 87
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=20.10 E-value=1.1e+02 Score=25.80 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=30.6
Q ss_pred CCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeC
Q 025676 7 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCK 43 (249)
Q Consensus 7 ~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~ 43 (249)
-||.++.+ +|+|...--|++..|+..|=..|||...
T Consensus 3 ~~DlHvHt-~~d~~~~~~e~i~~A~~~Gl~~i~itdH 38 (237)
T PRK00912 3 FYDLNVHA-VPDGYDTVLRLISEASHLGYSGIALSNH 38 (237)
T ss_pred ceEeccCC-CCCCcchHHHHHHHHHHCCCCEEEEecC
Confidence 36888777 5889888889999999999999999753
Done!