Query 025676
Match_columns 249
No_of_seqs 128 out of 1169
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 15:12:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025676.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025676hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nzj_F Proteasome component C1 100.0 3.5E-67 1.2E-71 458.9 31.9 248 1-248 1-252 (288)
2 1iru_G 20S proteasome; cell cy 100.0 1.4E-65 4.8E-70 442.6 30.4 247 2-248 1-249 (254)
3 3h4p_A Proteasome subunit alph 100.0 2.4E-64 8.2E-69 436.8 20.9 241 5-248 9-249 (264)
4 1ryp_G 20S proteasome; multica 100.0 1.9E-62 6.4E-67 420.8 32.5 239 6-244 2-244 (244)
5 1ryp_A 20S proteasome; multica 100.0 8.2E-63 2.8E-67 422.8 27.2 230 6-239 1-239 (243)
6 1iru_A 20S proteasome; cell cy 100.0 3E-62 1E-66 420.0 30.4 236 1-239 3-242 (246)
7 1ryp_C 20S proteasome; multica 100.0 5.8E-62 2E-66 417.8 31.6 235 6-240 3-242 (244)
8 1yar_A Proteasome alpha subuni 100.0 1.8E-62 6.2E-67 418.2 28.1 231 1-236 3-233 (233)
9 1j2p_A Alpha-ring, proteasome 100.0 7.4E-62 2.5E-66 417.6 32.1 237 6-246 6-243 (246)
10 1iru_C 20S proteasome; cell cy 100.0 4.1E-62 1.4E-66 422.6 30.8 238 1-241 1-242 (261)
11 1iru_B 20S proteasome; cell cy 100.0 3.4E-62 1.2E-66 416.5 29.2 230 5-238 2-231 (233)
12 1iru_E 20S proteasome; cell cy 100.0 3.7E-62 1.3E-66 418.2 27.8 233 1-238 3-240 (241)
13 1ryp_D 20S proteasome; multica 100.0 3.8E-61 1.3E-65 412.0 31.1 229 7-240 1-235 (241)
14 1ryp_E 20S proteasome; multica 100.0 7.9E-61 2.7E-65 410.2 28.5 230 9-241 1-237 (242)
15 1ryp_B 20S proteasome; multica 100.0 1.6E-60 5.4E-65 410.2 30.4 232 6-238 3-249 (250)
16 1iru_D 20S proteasome; cell cy 100.0 4.1E-61 1.4E-65 413.4 26.1 228 8-240 3-233 (248)
17 1ryp_F 20S proteasome; multica 100.0 1.4E-61 4.7E-66 412.8 20.7 226 6-236 3-233 (233)
18 1iru_F 20S proteasome; cell cy 100.0 8.3E-61 2.8E-65 414.7 24.8 231 5-239 3-236 (263)
19 1q5q_A Proteasome alpha-type s 100.0 8.8E-51 3E-55 351.0 22.2 217 13-239 5-235 (259)
20 3mi0_A Proteasome subunit alph 100.0 8.4E-50 2.9E-54 342.4 24.5 215 16-240 8-238 (248)
21 1yar_H Proteasome beta subunit 100.0 3.2E-47 1.1E-51 320.8 25.4 208 29-243 3-211 (217)
22 3h4p_a Proteasome subunit beta 100.0 8E-47 2.7E-51 318.8 23.2 203 34-243 1-206 (219)
23 1j2q_H Proteasome beta subunit 100.0 7.1E-46 2.4E-50 309.2 25.0 198 35-239 1-200 (202)
24 3nzj_K Proteasome component PR 100.0 5.3E-46 1.8E-50 324.8 23.7 214 26-246 67-282 (287)
25 1q5r_H Proteasome beta-type su 100.0 2.9E-45 9.9E-50 321.1 24.6 211 27-241 58-284 (294)
26 1ryp_L 20S proteasome; multica 100.0 3.9E-45 1.3E-49 306.9 23.6 204 35-245 1-206 (212)
27 2jay_A Proteasome; hydrolase; 100.0 3.2E-45 1.1E-49 320.6 23.3 232 6-242 23-277 (291)
28 1iru_L 20S proteasome; cell cy 100.0 5.2E-45 1.8E-49 304.4 23.3 198 35-239 1-199 (204)
29 1iru_H 20S proteasome; cell cy 100.0 2E-45 6.9E-50 307.1 19.8 197 35-237 1-199 (205)
30 1iru_N 20S proteasome; cell cy 100.0 8.9E-46 3E-50 312.3 16.7 201 29-234 3-207 (219)
31 1q5q_H Proteasome beta-type su 100.0 2.8E-44 9.5E-49 306.3 25.4 205 35-243 1-221 (235)
32 1ryp_N 20S proteasome; multica 100.0 1.5E-45 5.2E-50 313.7 15.3 203 29-235 3-217 (233)
33 1ryp_H 20S proteasome; multica 100.0 2.1E-44 7E-49 301.1 21.2 187 28-220 3-191 (205)
34 1iru_M 20S proteasome; cell cy 100.0 1.2E-43 4E-48 298.1 24.6 185 31-219 6-201 (213)
35 3nzj_H Proteasome component PU 100.0 1E-43 3.6E-48 306.7 24.0 189 27-220 22-211 (261)
36 1ryp_K 20S proteasome; multica 100.0 1.6E-43 5.4E-48 294.0 22.8 189 35-228 2-193 (198)
37 3unf_H Proteasome subunit beta 100.0 6E-44 2.1E-48 303.9 20.7 190 35-232 1-191 (234)
38 1g0u_M Proteasome component PR 100.0 5.2E-45 1.8E-49 316.1 13.8 209 23-235 30-250 (266)
39 1iru_J 20S proteasome; cell cy 100.0 6.1E-43 2.1E-47 292.1 23.8 186 31-220 5-194 (205)
40 1ryp_J 20S proteasome; multica 100.0 1.1E-42 3.8E-47 290.3 24.7 186 30-220 4-193 (204)
41 1ryp_M 20S proteasome; multica 100.0 8.5E-43 2.9E-47 294.7 23.0 186 30-219 5-210 (222)
42 1ryp_I 20S proteasome; multica 100.0 2.7E-42 9.1E-47 291.7 23.7 181 35-220 1-182 (222)
43 3unf_N Proteasome subunit beta 100.0 4.4E-43 1.5E-47 291.6 17.4 194 35-236 1-197 (199)
44 1iru_I 20S proteasome; cell cy 100.0 2E-41 6.9E-46 288.4 25.1 180 35-219 1-181 (234)
45 1iru_K 20S proteasome; cell cy 100.0 1.3E-41 4.5E-46 283.1 23.0 183 35-219 2-186 (201)
46 2z3b_A ATP-dependent protease 100.0 1.8E-35 6.1E-40 242.3 17.3 169 32-216 3-179 (180)
47 1m4y_A ATP-dependent protease 100.0 8.3E-35 2.9E-39 236.3 17.0 165 35-215 1-170 (171)
48 1g3k_A ATP-dependent protease 100.0 9.5E-35 3.2E-39 236.6 16.9 167 35-217 1-173 (174)
49 1vd2_A Protein kinase C, IOTA 56.6 39 0.0013 23.4 6.4 59 180-245 22-80 (89)
50 2hc5_A ORF 99, hypothetical pr 45.6 42 0.0014 24.4 5.4 33 209-241 67-99 (117)
51 3jx9_A Putative phosphoheptose 40.1 16 0.00055 28.5 2.5 31 12-42 81-112 (170)
52 2yxo_A Histidinol phosphatase; 34.8 27 0.00091 28.3 3.2 30 13-42 8-37 (267)
53 4eo3_A Bacterioferritin comigr 28.6 12 0.0004 32.2 -0.0 45 146-190 103-148 (322)
No 1
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=3.5e-67 Score=458.94 Aligned_cols=248 Identities=50% Similarity=0.852 Sum_probs=234.5
Q ss_pred CCCCCCCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEec
Q 025676 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAG 80 (249)
Q Consensus 1 ~~~~~~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG 80 (249)
|||+.++||+++|+|||+|||+|||||++|+++|+|+|||+++||||||+|+|.++++++.++.+|||+|++||+|+++|
T Consensus 1 m~~~~~~yd~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG 80 (288)
T 3nzj_F 1 MTSIGTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSG 80 (288)
T ss_dssp ----CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEE
T ss_pred CCCCcCCccCCcccCCCCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999887789999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeee
Q 025676 81 LAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRY 160 (249)
Q Consensus 81 ~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~ 160 (249)
..+|++.|++++|.+++.|+++++++|+++.+|++|++++|.||+++++|||+|++||||||++||+||++||+|++.++
T Consensus 81 ~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~ 160 (288)
T 3nzj_F 81 LIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGY 160 (288)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEB
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEECCCCCEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCChHHHHHHHHhc---CCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEe-CCCCcEEeCCHHHHHHHH
Q 025676 161 FGAAIGKGRQAAKTEIEKL---KLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCD-ESNRQHQKVPDELLEEAK 236 (249)
Q Consensus 161 ~~~a~G~~~~~~~~~Le~~---~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~-~~~~~~~~~~~~ei~~~~ 236 (249)
+++|+|+++++++++||+. |+++||++||++++++||..+.+++..+++++||++|++ ++++.++.+|++++++..
T Consensus 161 ~~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~~~~ 240 (288)
T 3nzj_F 161 KGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAI 240 (288)
T ss_dssp SEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHHHHH
T ss_pred CEEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999878889999999998 667789999999999999
Q ss_pred HHHHHhhhhccC
Q 025676 237 AAARAALEEMDA 248 (249)
Q Consensus 237 ~~~~~~~~~~~~ 248 (249)
+.++.++|+.|.
T Consensus 241 ~~~~~~~~~~~~ 252 (288)
T 3nzj_F 241 DFAQKEINGDDD 252 (288)
T ss_dssp HHHHHHTC----
T ss_pred HHHHHHhhcccc
Confidence 999999998764
No 2
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=1.4e-65 Score=442.64 Aligned_cols=247 Identities=63% Similarity=1.005 Sum_probs=233.4
Q ss_pred CCCCCCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecC
Q 025676 2 SSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGL 81 (249)
Q Consensus 2 ~~~~~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~ 81 (249)
||+.++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+.++++.++.+||++|++||+|+++|.
T Consensus 1 ~~~~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~ 80 (254)
T 1iru_G 1 SSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGL 80 (254)
T ss_dssp CCCCSSTTSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEEC
T ss_pred CCcccccCCCCccCCcCCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecC
Confidence 78899999999999999999999999999999999999999999999999999999998777899999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEe-CCCcEEEEECCCCceeee
Q 025676 82 AADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRY 160 (249)
Q Consensus 82 ~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d-~~gp~Ly~idp~G~~~~~ 160 (249)
.+|++.+.++++.+++.|+++++++|+++.+++++++++|.|++++++|||+|++|||||| ++||+||++||+|++.++
T Consensus 81 ~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 160 (254)
T 1iru_G 81 LADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGY 160 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEB
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEee
Confidence 9999999999999999999999999999999999999999999999999999999999999 688999999999999999
Q ss_pred cEEEecCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHH
Q 025676 161 FGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAAR 240 (249)
Q Consensus 161 ~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~ 240 (249)
+++|+|+++++++++||+.|+++||++||+++++++|..+.+++..++.++||++|++++++.++++++++++++++.++
T Consensus 161 ~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~~~~ 240 (254)
T 1iru_G 161 WGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK 240 (254)
T ss_dssp SEEEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHHH
T ss_pred eeEEecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876557888999999986544699999999999999999
Q ss_pred Hhhh-hccC
Q 025676 241 AALE-EMDA 248 (249)
Q Consensus 241 ~~~~-~~~~ 248 (249)
..+| ++|.
T Consensus 241 ~~~~~~~~~ 249 (254)
T 1iru_G 241 ESLKEEDES 249 (254)
T ss_dssp HHHCC----
T ss_pred Hhhhhcccc
Confidence 9999 4544
No 3
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.4e-64 Score=436.84 Aligned_cols=241 Identities=31% Similarity=0.535 Sum_probs=222.4
Q ss_pred CCCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhH
Q 025676 5 GTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAAD 84 (249)
Q Consensus 5 ~~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D 84 (249)
+++||+++|+|||+|||+|||||++|+++|+|+|||+++||||||+|+|.+++++..++.+|||+|++||+|+++|..+|
T Consensus 9 ~~~yd~~~t~fSp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~aG~~aD 88 (264)
T 3h4p_A 9 PSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVAD 88 (264)
T ss_dssp -------CCCCCSSSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEEEECSHH
T ss_pred ccccCCCcceECCCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEeccchHH
Confidence 58999999999999999999999999999999999999999999999999999766667899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEE
Q 025676 85 GRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAA 164 (249)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a 164 (249)
++.++++++.+++.|+++++.+++++.+|++|++++|.|++++++|||+|++||||||++||+||++||+|++.+++++|
T Consensus 89 ~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~~~~~~~~a 168 (264)
T 3h4p_A 89 ARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATA 168 (264)
T ss_dssp HHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCCCEEESEEE
T ss_pred HHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEEEECCCceEEecCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred ecCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHHHhhh
Q 025676 165 IGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALE 244 (249)
Q Consensus 165 ~G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~~~~~ 244 (249)
+|+++.+++++||+.|+++||++||++++++||..+.++ .++.+++|++|+++. ..|++++++|++++++.+.+++|
T Consensus 169 iGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~-~~~~~l~~~ei~~~~~~~~~~~~ 245 (264)
T 3h4p_A 169 IGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANED--IKPENVDVCIITVKD-AQFKKIPVEEIKKLIEKVKKKLN 245 (264)
T ss_dssp ESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTT-TEEEECCTTTTGGGTTTTTTSSS
T ss_pred ECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCC-CcEEECCHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999987 577889999999764 46999999999999999988887
Q ss_pred hccC
Q 025676 245 EMDA 248 (249)
Q Consensus 245 ~~~~ 248 (249)
+-|.
T Consensus 246 ~~~~ 249 (264)
T 3h4p_A 246 EENK 249 (264)
T ss_dssp CC--
T ss_pred cchh
Confidence 7553
No 4
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=1.9e-62 Score=420.82 Aligned_cols=239 Identities=50% Similarity=0.857 Sum_probs=228.4
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhHH
Q 025676 6 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADG 85 (249)
Q Consensus 6 ~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 85 (249)
++||+++|+|||||||+|+|||.+|+++|+|+|||+++||||||+|+|.++++++.++.+||++|++|++|+++|..+|+
T Consensus 2 ~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~ 81 (244)
T 1ryp_G 2 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDG 81 (244)
T ss_dssp CCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHHHH
T ss_pred CCccCCcccCCcCCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHHHH
Confidence 58999999999999999999999999999999999999999999999999999888777999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEe
Q 025676 86 RQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAI 165 (249)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~ 165 (249)
+.+.++++.+++.|+++++++++++.+++++++.+|.||+++++|||++++||||+|++||+||.+||+|++.+++++|+
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~ai 161 (244)
T 1ryp_G 82 RHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAAT 161 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEEEECCCCCEEEeeEEEE
Confidence 99999999999999999999999999999999999999999889999999999999988999999999999999999999
Q ss_pred cCChHHHHHHHHhc---CCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEe-CCCCcEEeCCHHHHHHHHHHHHH
Q 025676 166 GKGRQAAKTEIEKL---KLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCD-ESNRQHQKVPDELLEEAKAAARA 241 (249)
Q Consensus 166 G~~~~~~~~~Le~~---~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~-~~~~~~~~~~~~ei~~~~~~~~~ 241 (249)
|+|+++++++||+. |+++||++||++++++||..+.+++..++.++||++|++ ++++.++..+++.++++.+.+++
T Consensus 162 G~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~~~~~~~~~~~~~~~ 241 (244)
T 1ryp_G 162 GKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQK 241 (244)
T ss_dssp STTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeChHHHHHHHHHHHHH
Confidence 99999999999997 999999999999999999999999877888999999996 44456888999999999999888
Q ss_pred hhh
Q 025676 242 ALE 244 (249)
Q Consensus 242 ~~~ 244 (249)
++|
T Consensus 242 ~~~ 244 (244)
T 1ryp_G 242 EIN 244 (244)
T ss_dssp TTC
T ss_pred hcC
Confidence 775
No 5
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=8.2e-63 Score=422.79 Aligned_cols=230 Identities=28% Similarity=0.423 Sum_probs=219.7
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHhhhc-CCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhH
Q 025676 6 TGYDLSVTTFSPDGRVFQIEYAAKAVDN-SGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAAD 84 (249)
Q Consensus 6 ~~yd~~~t~fspeGrl~Q~eya~~a~~~-G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D 84 (249)
++||+++|+|||||||+|||||++|+++ |+|+|||+++||||||+|+|.+.++...++.+|||+|++|++|+++|..+|
T Consensus 1 ~~yd~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 80 (243)
T 1ryp_A 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD 80 (243)
T ss_dssp CGGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHH
T ss_pred CCCCCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHH
Confidence 4799999999999999999999999999 999999999999999999999966665667899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceeeecEE
Q 025676 85 GRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGA 163 (249)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~~~~~ 163 (249)
++.+.+.++.+++.|+++++++|+++.+|+++++.+|.|++++++|||+|++||||||+ +||+||++||+|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~ 160 (243)
T 1ryp_A 81 ARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKAT 160 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999997 78999999999999999999
Q ss_pred EecCChHHHHHHHHhcCCC-------CCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHH
Q 025676 164 AIGKGRQAAKTEIEKLKLS-------EMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAK 236 (249)
Q Consensus 164 a~G~~~~~~~~~Le~~~~~-------~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~ 236 (249)
|+|++++.++++||+.|++ +||++||++++++||..+.+++ .++.++||++|+++ + +++++++|+++++
T Consensus 161 a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~--g-~~~l~~~ei~~~~ 236 (243)
T 1ryp_A 161 ATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKD--K-FFTLSAENIEERL 236 (243)
T ss_dssp EESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETT--E-EEECCHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECC--C-eEECCHHHHHHHH
Confidence 9999999999999999988 9999999999999999999996 67888999999986 3 9999999999999
Q ss_pred HHH
Q 025676 237 AAA 239 (249)
Q Consensus 237 ~~~ 239 (249)
+..
T Consensus 237 ~~~ 239 (243)
T 1ryp_A 237 VAI 239 (243)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 6
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=3e-62 Score=419.97 Aligned_cols=236 Identities=30% Similarity=0.461 Sum_probs=223.8
Q ss_pred CCCCCCCCCCCCcccCCCCcchhhhhHHHhhhc-CCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEe
Q 025676 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDN-SGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVA 79 (249)
Q Consensus 1 ~~~~~~~yd~~~t~fspeGrl~Q~eya~~a~~~-G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~s 79 (249)
||+ .++||+++|+|||||||+|||||.+|+++ |+|+|||+++||||||+|+|.+.++...++.+||++|++|++|+++
T Consensus 3 m~~-~~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~a 81 (246)
T 1iru_A 3 RGS-SAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMT 81 (246)
T ss_dssp CSC-CCTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEEE
T ss_pred CCc-cCCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEEe
Confidence 777 68999999999999999999999999999 9999999999999999999999766555678999999999999999
Q ss_pred cChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCcee
Q 025676 80 GLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISY 158 (249)
Q Consensus 80 G~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~ 158 (249)
|..+|++.+.++++.+++.|+++++++++++.+++++++++|.|++++++|||+|++||||||+ +||+||.+||+|++.
T Consensus 82 G~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~ 161 (246)
T 1iru_A 82 GMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYC 161 (246)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEE
Confidence 9999999999999999999999999999999999999999999999989999999999999997 789999999999999
Q ss_pred eecEEEecCChHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHH
Q 025676 159 RYFGAAIGKGRQAAKTEIEKLKLS--EMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAK 236 (249)
Q Consensus 159 ~~~~~a~G~~~~~~~~~Le~~~~~--~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~ 236 (249)
+++++|+|+|+++++++||+.|++ +||++||++++++||..+.+++ .++.+++|++|+++ +..|++++++|+++++
T Consensus 162 ~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~-g~~~~~l~~~ei~~~~ 239 (246)
T 1iru_A 162 GFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVE-NPKFRILTEAEIDAHL 239 (246)
T ss_dssp EBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETT-EEEEEECCHHHHHHHH
T ss_pred EeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECC-CCeEEECCHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999996 77888999999985 3248999999999999
Q ss_pred HHH
Q 025676 237 AAA 239 (249)
Q Consensus 237 ~~~ 239 (249)
+..
T Consensus 240 ~~~ 242 (246)
T 1iru_A 240 VAL 242 (246)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
No 7
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=5.8e-62 Score=417.75 Aligned_cols=235 Identities=29% Similarity=0.450 Sum_probs=223.0
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCcc-CCCCCceEEecCcEEEEEecChhH
Q 025676 6 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAAD 84 (249)
Q Consensus 6 ~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~-~~~~~Ki~~i~~~i~~~~sG~~~D 84 (249)
.+||+++|+|||||||+|+|||++|+++|+|+|||+++||||||+|+|.++++++ .++.+||++|++|++|+++|..+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 82 (244)
T 1ryp_C 3 RRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTAD 82 (244)
T ss_dssp GGGCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHH
T ss_pred CccCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHH
Confidence 3899999999999999999999999999999999999999999999999999988 567899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEe-CCCcEEEEECCCCceeeecEE
Q 025676 85 GRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGA 163 (249)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d-~~gp~Ly~idp~G~~~~~~~~ 163 (249)
++.+.++++.+++.|+++++++++++.+++++++++|.|++++++|||+|++||||+| ++||+||.+||+|++.+++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 162 (244)
T 1ryp_C 83 AEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAI 162 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEE
Confidence 9999999999999999999999999999999999999999999999999999999999 688999999999999999999
Q ss_pred EecCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEE--eCCCC-cEEeCCHHHHHHHHHHHH
Q 025676 164 AIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVC--DESNR-QHQKVPDELLEEAKAAAR 240 (249)
Q Consensus 164 a~G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~--~~~~~-~~~~~~~~ei~~~~~~~~ 240 (249)
|+|+|+++++++||+.|+++||++||++++++||..+.+++..++.+++|++|+ +++.+ .+++++++|+++++..+.
T Consensus 163 aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~~~~ 242 (244)
T 1ryp_C 163 SVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVKTG 242 (244)
T ss_dssp EESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHHHHT
T ss_pred EECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999865568889999999 76431 399999999999998653
No 8
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1.8e-62 Score=418.19 Aligned_cols=231 Identities=27% Similarity=0.447 Sum_probs=211.7
Q ss_pred CCCCCCCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEec
Q 025676 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAG 80 (249)
Q Consensus 1 ~~~~~~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG 80 (249)
||. ++||+++|+|||||||+|+|||.+|+++|+|+|||+++||||||+|+|.++++...++.+||++|++|++|+++|
T Consensus 3 m~~--~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG 80 (233)
T 1yar_A 3 QGQ--MAYSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSG 80 (233)
T ss_dssp ------------CCCCTTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEE
T ss_pred ccc--ccCCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEee
Confidence 554 799999999999999999999999999999999999999999999999999976666789999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeee
Q 025676 81 LAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRY 160 (249)
Q Consensus 81 ~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~ 160 (249)
..+|++.+.++++.+++.|+++++++++++.+|+++++++|.|++++++|||++++|+||||++||+||.+||+|++.++
T Consensus 81 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~~~~ 160 (233)
T 1yar_A 81 LVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEY 160 (233)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCEEEB
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEEEECCCCCEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred cEEEecCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHH
Q 025676 161 FGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAK 236 (249)
Q Consensus 161 ~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~ 236 (249)
+++|+|+|+++++++||+.|+++||++||++++++||..+.+++. ++.+++|++|++++ .+++++++|+++++
T Consensus 161 ~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~--~~~~~~~~ei~~~l 233 (233)
T 1yar_A 161 KATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGN--KYRIYDQEEVKKFL 233 (233)
T ss_dssp SEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTS--CCEECCHHHHHTTC
T ss_pred eEEEEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCC--CEEECCHHHHHhhC
Confidence 999999999999999999999999999999999999999999864 67889999999863 49999999998763
No 9
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=7.4e-62 Score=417.59 Aligned_cols=237 Identities=33% Similarity=0.545 Sum_probs=224.7
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhHH
Q 025676 6 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADG 85 (249)
Q Consensus 6 ~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 85 (249)
++||+++|+|||||||+|+|||.+|+++|+|+|||+++||||||+|+|.+.++...++.+||++|++|++|+++|..+|+
T Consensus 6 ~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~ 85 (246)
T 1j2p_A 6 MGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADA 85 (246)
T ss_dssp TTSSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECHHHH
T ss_pred cCcCCCCceECCCCeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeEccHHH
Confidence 69999999999999999999999999999999999999999999999999998766678999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEe
Q 025676 86 RQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAI 165 (249)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~ 165 (249)
+.+.++++.+++.|+++++.+++++.+++++++.+|.|+++.++|||++++||||+| +||+||.+||+|++.+++++|+
T Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~ai 164 (246)
T 1j2p_A 86 RVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVPKLYETDPSGALLEYKATAI 164 (246)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSEEEEEECTTCCEEEBSEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CCCEEEEECCCceEEeeeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred cCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEE-eCCCCcEEeCCHHHHHHHHHHHHHhhh
Q 025676 166 GKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVC-DESNRQHQKVPDELLEEAKAAARAALE 244 (249)
Q Consensus 166 G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~-~~~~~~~~~~~~~ei~~~~~~~~~~~~ 244 (249)
|+|+.+++++||+.|+++||++||++++++||..+.++ ..++.+++|++|+ ++ +.+++++++|++++++...+.-+
T Consensus 165 Gsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~--~~~~~l~~~ei~~~~~~~~~~~~ 241 (246)
T 1j2p_A 165 GMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDD--RTFKEVSPEELKPYVERANERIR 241 (246)
T ss_dssp STTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTT--CCCEECCHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCC--CceEECCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 7788899999999 53 24999999999999988765544
Q ss_pred hc
Q 025676 245 EM 246 (249)
Q Consensus 245 ~~ 246 (249)
+.
T Consensus 242 ~~ 243 (246)
T 1j2p_A 242 EL 243 (246)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 10
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=4.1e-62 Score=422.56 Aligned_cols=238 Identities=27% Similarity=0.421 Sum_probs=226.1
Q ss_pred CCCCCCCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCC-CCceEEecCcEEEEEe
Q 025676 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGS-NRRIHSVHRHSGMAVA 79 (249)
Q Consensus 1 ~~~~~~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~-~~Ki~~i~~~i~~~~s 79 (249)
|++ +||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++++++.++ .+||++|++|++|+++
T Consensus 1 m~~---~yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~a 77 (261)
T 1iru_C 1 MSR---RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVA 77 (261)
T ss_dssp -CT---TTCCCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEE
T ss_pred CCC---ccCCCCccCCCCCeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEe
Confidence 554 899999999999999999999999999999999999999999999999999998876 7999999999999999
Q ss_pred cChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCcee
Q 025676 80 GLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISY 158 (249)
Q Consensus 80 G~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~ 158 (249)
|..+|++.+.++++.+++.|+++++.+++++.+++++++++|.|+++.++|||+|++||||||+ +||+||.+||+|++.
T Consensus 78 G~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~ 157 (261)
T 1iru_C 78 GITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYG 157 (261)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEE
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999999995 789999999999999
Q ss_pred eecEEEecCChHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCC-cEEeCCHHHHHHHH
Q 025676 159 RYFGAAIGKGRQAAKTEIEKLKLS-EMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNR-QHQKVPDELLEEAK 236 (249)
Q Consensus 159 ~~~~~a~G~~~~~~~~~Le~~~~~-~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~-~~~~~~~~ei~~~~ 236 (249)
+++++|+|+|+.+++++||+.|++ +||++||++++++||..+.+++..++.+++|++|++++.. .|++++++|+++++
T Consensus 158 ~~~~~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l 237 (261)
T 1iru_C 158 GWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 237 (261)
T ss_dssp ECSEEEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHH
T ss_pred eeeeEEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999997777888999999987433 38999999999999
Q ss_pred HHHHH
Q 025676 237 AAARA 241 (249)
Q Consensus 237 ~~~~~ 241 (249)
....+
T Consensus 238 ~~~~~ 242 (261)
T 1iru_C 238 KKHEE 242 (261)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98753
No 11
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=3.4e-62 Score=416.49 Aligned_cols=230 Identities=30% Similarity=0.473 Sum_probs=219.5
Q ss_pred CCCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhH
Q 025676 5 GTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAAD 84 (249)
Q Consensus 5 ~~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D 84 (249)
+++||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|+|.+.++...++.+||++|++|++|+++|..+|
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (233)
T 1iru_B 2 ERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPD 81 (233)
T ss_dssp CCCCCSBSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHH
T ss_pred CCCccCCceeECCCCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccHH
Confidence 47999999999999999999999999999999999999999999999999976666667899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEE
Q 025676 85 GRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAA 164 (249)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a 164 (249)
++.+.++++.+++.|+++++.+++++.+++++++.+|.|++++++|||+|++|+||+|++||+||.+||+|++.+++++|
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~a 161 (233)
T 1iru_B 82 YRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATA 161 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEEEECCCCCEEEeeEEE
Confidence 99999999999999999999999999999999999999999989999999999999998899999999999999999999
Q ss_pred ecCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHH
Q 025676 165 IGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAA 238 (249)
Q Consensus 165 ~G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~ 238 (249)
+|+|+++++++||+.|+++||++||++++++||..+.+++ .++.+++|++|+++ .+++++++|+++++..
T Consensus 162 iG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~---g~~~l~~~ei~~~~~~ 231 (233)
T 1iru_B 162 MGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEA---GFRRLTPTEVKDYLAA 231 (233)
T ss_dssp ESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETT---EEEECCHHHHHHHHTT
T ss_pred ECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECC---CEEECCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999986 66788999999975 2999999999998853
No 12
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=3.7e-62 Score=418.23 Aligned_cols=233 Identities=32% Similarity=0.513 Sum_probs=219.2
Q ss_pred CCCCCCCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEec
Q 025676 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAG 80 (249)
Q Consensus 1 ~~~~~~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG 80 (249)
||+ ++||+++|+|||||||+|+|||.+|+++|+|+|||+++||||||+|+|.++++++.++.+||++|++|++|+++|
T Consensus 3 m~~--~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG 80 (241)
T 1iru_E 3 LTR--SEYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSG 80 (241)
T ss_dssp -------CCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEE
T ss_pred Ccc--CCCCCCCceECCCCccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEee
Confidence 454 799999999999999999999999999999999999999999999999999998866679999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhccccc-----ccccceeeEEEEEeCCCcEEEEECCCC
Q 025676 81 LAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWW-----LRPFGCGVILGGYDRDGPQLYMIEPSG 155 (249)
Q Consensus 81 ~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~-----~rp~~vs~il~G~d~~gp~Ly~idp~G 155 (249)
..+|++.+.++++.+++.|+++++++++++.+++++++++|.|+++.+ .|||+|++||||+|++||+||.+||+|
T Consensus 81 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~idp~G 160 (241)
T 1iru_E 81 LIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSG 160 (241)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEECCCC
Confidence 999999999999999999999999999999999999999999999887 899999999999998899999999999
Q ss_pred ceeeecEEEecCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHH
Q 025676 156 ISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEA 235 (249)
Q Consensus 156 ~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~ 235 (249)
++.+++++|+|+|+.+++++||+.|+++||++||++++++||..+.++ ..++.+++|++|++++ .+++++++|++++
T Consensus 161 ~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~--~~~~l~~~ei~~~ 237 (241)
T 1iru_E 161 TFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQ--NFHMFTKEELEEV 237 (241)
T ss_dssp CEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSS--CCEECCHHHHHHH
T ss_pred cEEecceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCC--CeEECCHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 7778899999998763 3999999999999
Q ss_pred HHH
Q 025676 236 KAA 238 (249)
Q Consensus 236 ~~~ 238 (249)
++.
T Consensus 238 ~~~ 240 (241)
T 1iru_E 238 IKD 240 (241)
T ss_dssp HTT
T ss_pred HHh
Confidence 853
No 13
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=3.8e-61 Score=412.00 Aligned_cols=229 Identities=28% Similarity=0.457 Sum_probs=219.2
Q ss_pred CCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCC-CCCceEEecCcEEEEEecChhHH
Q 025676 7 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAADG 85 (249)
Q Consensus 7 ~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~-~~~Ki~~i~~~i~~~~sG~~~D~ 85 (249)
+||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+.++++.+ +.+||++|++|++|+++|..+|+
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADS 80 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHH
Confidence 69999999999999999999999999999999999999999999999999998876 67999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeC--CCcEEEEECCCCceeeecEE
Q 025676 86 RQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR--DGPQLYMIEPSGISYRYFGA 163 (249)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~--~gp~Ly~idp~G~~~~~~~~ 163 (249)
+.+.++++.+++.|+++++++|+++.+|+++++.+|.|++++++|||+|++||||||+ +||+||.+||+|++.+++++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~ 160 (241)
T 1ryp_D 81 RILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQ 160 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeE
Confidence 9999999999999999999999999999999999999999989999999999999998 78999999999999999999
Q ss_pred EecCChHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHH
Q 025676 164 AIGKGRQAAKTEIEKLK---LSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAAR 240 (249)
Q Consensus 164 a~G~~~~~~~~~Le~~~---~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~ 240 (249)
|+|+++++++++||+.| +++||++||++++++||..+.+ .++.+++|++|++++ .+++++++|+++++....
T Consensus 161 aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~--~~~~l~~~ei~~~~~~~~ 235 (241)
T 1ryp_D 161 TIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDS--DIVALSSEEINQYVTQIE 235 (241)
T ss_dssp EESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTT--EEEECCHHHHHHHHHHHT
T ss_pred EECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCC--cEEECCHHHHHHHHHHHh
Confidence 99999999999999999 9999999999999999999987 456779999999863 599999999999998764
No 14
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=7.9e-61 Score=410.22 Aligned_cols=230 Identities=34% Similarity=0.511 Sum_probs=219.8
Q ss_pred CCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhHHHHH
Q 025676 9 DLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQI 88 (249)
Q Consensus 9 d~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 88 (249)
|+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++++++.++.+||++|++|++|+++|..+|++.+
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 80 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSM 80 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999885667999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhccccc------ccccceeeEEEEEe-CCCcEEEEECCCCceeeec
Q 025676 89 VTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWW------LRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYF 161 (249)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~------~rp~~vs~il~G~d-~~gp~Ly~idp~G~~~~~~ 161 (249)
.++++.+++.|+++++++++++.+++++++++|.||++++ .|||+|++||||+| ++||+||.+||+|++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~ 160 (242)
T 1ryp_E 81 IEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYN 160 (242)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBS
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccC
Confidence 9999999999999999999999999999999999999988 99999999999999 6789999999999999999
Q ss_pred EEEecCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHHH
Q 025676 162 GAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARA 241 (249)
Q Consensus 162 ~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~~ 241 (249)
++|+|+|+.+++++||+.|+++||++||++++++||..+.++ ..++.+++|++|++++ .+++++++|++++++...+
T Consensus 161 ~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~--~~~~~~~~ei~~~~~~~~~ 237 (242)
T 1ryp_E 161 AKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQD--GFKIYDNEKTAELIKELKE 237 (242)
T ss_dssp EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTT--EEEECCHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCC--CeEECCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999998 6778889999999763 4999999999999998744
No 15
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.6e-60 Score=410.24 Aligned_cols=232 Identities=29% Similarity=0.459 Sum_probs=218.2
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhHH
Q 025676 6 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADG 85 (249)
Q Consensus 6 ~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 85 (249)
++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+.++...++.+||++|++|++|+++|..+|+
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 82 (250)
T 1ryp_B 3 DRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDY 82 (250)
T ss_dssp CCCCSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHHH
T ss_pred CcccCCceeECCCCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHHH
Confidence 38999999999999999999999999999999999999999999999998666555678999999999999999999999
Q ss_pred HHHHHHHHHHHHH-hHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceeeecEE
Q 025676 86 RQIVTRAKSEATN-YESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGA 163 (249)
Q Consensus 86 ~~l~~~~~~~~~~-~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~~~~~ 163 (249)
+.+.++++.+++. |++.++.+++++.+++.+++++|.++++.++|||+|++||||||+ +||+||.+||+|++.+++++
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 162 (250)
T 1ryp_B 83 RVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKAT 162 (250)
T ss_dssp HHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeecee
Confidence 9999999999999 999999999999999999999999999988999999999999997 68999999999999999999
Q ss_pred EecCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeC-------------CCCcEEeCCHH
Q 025676 164 AIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDE-------------SNRQHQKVPDE 230 (249)
Q Consensus 164 a~G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~-------------~~~~~~~~~~~ 230 (249)
|+|+|+++++++||+.|+++||++||++++++||..+.++ ..++.+++|++|+++ .++.|++++++
T Consensus 163 aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (250)
T 1ryp_B 163 AIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEG-EFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQ 241 (250)
T ss_dssp EESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCS-CCSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEECCHH
T ss_pred EecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhcc-ccCCCCEEEEEEEccccccccccccccCCCCCeEECCHH
Confidence 9999999999999999999999999999999999999988 556788999999975 23359999999
Q ss_pred HHHHHHHH
Q 025676 231 LLEEAKAA 238 (249)
Q Consensus 231 ei~~~~~~ 238 (249)
||++++..
T Consensus 242 ei~~~l~~ 249 (250)
T 1ryp_B 242 EINDRLEA 249 (250)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99999853
No 16
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=4.1e-61 Score=413.41 Aligned_cols=228 Identities=30% Similarity=0.461 Sum_probs=216.7
Q ss_pred CCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhHHHH
Q 025676 8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQ 87 (249)
Q Consensus 8 yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 87 (249)
||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++..++.+||++|++|++|+++|..+|++.
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~ 82 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARI 82 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHHH
T ss_pred ccCCCceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHHH
Confidence 99999999999999999999999999999999999999999999999999765566899999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEe-CCCcEEEEECCCCceeeecEEEec
Q 025676 88 IVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIG 166 (249)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d-~~gp~Ly~idp~G~~~~~~~~a~G 166 (249)
+.++++.+++.|+++++++|+++.+++++++++|.|++++++|||+|++|||||| ++||+||.+||+|++.+++++|+|
T Consensus 83 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG 162 (248)
T 1iru_D 83 VINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIG 162 (248)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEES
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999 689999999999999999999999
Q ss_pred CChHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHH
Q 025676 167 KGRQAAKTEIEKLKLSEM--TCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAAR 240 (249)
Q Consensus 167 ~~~~~~~~~Le~~~~~~l--s~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~ 240 (249)
+++++++++||+.|+++| |++||++++++||..+.+. ++.+++|++|++++ .+++++++|+++++....
T Consensus 163 ~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~~---sg~~i~v~vi~~~g--~~~~l~~~ei~~~~~~~~ 233 (248)
T 1iru_D 163 RGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQS---GGKNIELAVMRRDQ--SLKILNPEEIEKYVAEIE 233 (248)
T ss_dssp TTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSCT---TSTTCCEEEEESSS--CEECCCHHHHHHHTTTTT
T ss_pred CCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHcC---CCCcEEEEEEECCC--cEEECCHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999873 45668999999863 499999999999987653
No 17
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1.4e-61 Score=412.77 Aligned_cols=226 Identities=24% Similarity=0.387 Sum_probs=214.3
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhHH
Q 025676 6 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADG 85 (249)
Q Consensus 6 ~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 85 (249)
++||+++|+|||||||+|+|||++|+++|+|+|||+++||||||+|+|.+.++. +..+||++|++|++|+++|..+|+
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~--~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (233)
T 1ryp_F 3 NNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELS--SYQKKIIKCDEHMGLSLAGLAPDA 80 (233)
T ss_dssp HHHSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHHH
T ss_pred CcccCCCccCCCCCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccccc--cccCcEEEEcCCEEEEEEechHHH
Confidence 579999999999999999999999999999999999999999999999999975 467999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEe
Q 025676 86 RQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAI 165 (249)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~ 165 (249)
+.+.++++.+++.|+++++++|+++.+++++++.+|.||++.+.|||+|++||||||++||+||++||+|++.+++++|+
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~ai 160 (233)
T 1ryp_F 81 RVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAI 160 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEEEESEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEEEECCCCCeeeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHhcCCC--CC--CHHHHHHHHHHHHHHhhhcc-CCCCceEEEEEEEeCCCCcEEeCCHHHHHHHH
Q 025676 166 GKGRQAAKTEIEKLKLS--EM--TCRQGVIEVAKIIYGVHDEA-KDKAFELEMSWVCDESNRQHQKVPDELLEEAK 236 (249)
Q Consensus 166 G~~~~~~~~~Le~~~~~--~l--s~~eai~l~~~~l~~~~~~~-~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~ 236 (249)
|++++.++++||+.|++ +| |++||+++++++|..+. ++ ..++.+++|++|+++. .+++++++|+++++
T Consensus 161 G~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~--~~~~l~~~ei~~~l 233 (233)
T 1ryp_F 161 GARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDT--PFTIYDGEAVAKYI 233 (233)
T ss_dssp STTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTE--EEEEEEGGGGGGGC
T ss_pred CCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCC--CEEECCHHHHHhhC
Confidence 99999999999999998 99 99999999999999999 55 3578889999999753 49999999998763
No 18
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=8.3e-61 Score=414.71 Aligned_cols=231 Identities=26% Similarity=0.409 Sum_probs=219.7
Q ss_pred CCCCCCCCcccCCCCcchhhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhH
Q 025676 5 GTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAAD 84 (249)
Q Consensus 5 ~~~yd~~~t~fspeGrl~Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D 84 (249)
+++||+++|+|||||||+|+|||++|+++|+|+|||+++||||||+|+|.++++. +..+||++|++||+|+++|..+|
T Consensus 3 ~~~yd~~~t~fsP~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~--~~~~KI~~i~~~i~~~~aG~~aD 80 (263)
T 1iru_F 3 RNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA--AHQKKILHVDNHIGISIAGLTAD 80 (263)
T ss_dssp -CTTTSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHH
T ss_pred cCCCCCCCccCCCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccccc--cchhcEEEEcCCEEEEEeCCHHH
Confidence 4799999999999999999999999999999999999999999999999999974 46799999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEE
Q 025676 85 GRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAA 164 (249)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a 164 (249)
++.+.++++.+++.|+++++++|+++.+++++++++|.||+++++|||+|++||||||++||+||++||+|++.+++++|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~a 160 (263)
T 1iru_F 81 ARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMS 160 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCEEEESEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEEEECCCCCEEEeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred ecCChHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHhhhcc-CCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHH
Q 025676 165 IGKGRQAAKTEIEKLKLS--EMTCRQGVIEVAKIIYGVHDEA-KDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAA 239 (249)
Q Consensus 165 ~G~~~~~~~~~Le~~~~~--~ls~~eai~l~~~~l~~~~~~~-~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~ 239 (249)
+|+++++++++||+.|++ +||++||++++++||..+.+++ ..++.+++|++|++++ .+++++++|+++++...
T Consensus 161 iGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~--~~~~l~~~ei~~~~~~~ 236 (263)
T 1iru_F 161 IGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDL--EFTIYDDDDVSPFLEGL 236 (263)
T ss_dssp ESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTE--EEEEECSGGGHHHHTTC
T ss_pred cCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCC--CeEECCHHHHHHHHHHH
Confidence 999999999999999987 9999999999999999999987 3677889999999753 49999999999999765
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=8.8e-51 Score=351.05 Aligned_cols=217 Identities=15% Similarity=0.172 Sum_probs=195.0
Q ss_pred cccCCCCcch-hhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhHHHHHHHH
Q 025676 13 TTFSPDGRVF-QIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTR 91 (249)
Q Consensus 13 t~fspeGrl~-Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~ 91 (249)
..|||||++. |+|||.+|+++|+|+|||+++||||||+|+| .++.+|||+|++||+|+++|..+|++.|.++
T Consensus 5 ~~~sPe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r-------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~ 77 (259)
T 1q5q_A 5 YYASAEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP-------STALHKVSELYDRLGFAAVGKYNEFENLRRA 77 (259)
T ss_dssp ----CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC-------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHH
Confidence 4589999996 9999999999999999999999999999998 2567999999999999999999999999999
Q ss_pred HHHHHHHhHHHhC-CCCCHHHHHHHHHH-HHHHhcccccccccceeeEEEEEe----CCCcEEEEECCCCcee-eecEEE
Q 025676 92 AKSEATNYESVYG-EPIPVKELAQRVAS-YVHLCTLYWWLRPFGCGVILGGYD----RDGPQLYMIEPSGISY-RYFGAA 164 (249)
Q Consensus 92 ~~~~~~~~~~~~~-~~~~~~~la~~ls~-~~~~~t~~~~~rp~~vs~il~G~d----~~gp~Ly~idp~G~~~-~~~~~a 164 (249)
++.+++.|++.++ .+|+++.+++++++ +.|.|+ .++|||+|++|||||| ++||+||++||+|++. +++++|
T Consensus 78 ~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt--~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~a 155 (259)
T 1q5q_A 78 GIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFT--EQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVV 155 (259)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHH--HSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEE
T ss_pred HHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhc--cCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEE
Confidence 9999999999998 49999999999999 667787 3689999999999999 6899999999999999 789999
Q ss_pred ecCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhh-----hccCCCCceEEEEEEEeCC-CCcEEeCCHHHHHHHHHH
Q 025676 165 IGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVH-----DEAKDKAFELEMSWVCDES-NRQHQKVPDELLEEAKAA 238 (249)
Q Consensus 165 ~G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~-----~~~~~~~~~iei~iv~~~~-~~~~~~~~~~ei~~~~~~ 238 (249)
+|++++.++++||+.|+++||++||++++++||..+. +++. ++.+++|++|++++ ++.|++++++|+++++..
T Consensus 156 iG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~~~~~~~~l~~~ei~~~~~~ 234 (259)
T 1q5q_A 156 MGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSRPRRAFRRIAGTALEQLVPA 234 (259)
T ss_dssp ESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTSSSCCEEECCHHHHHTTSCC
T ss_pred ECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCCCcCCeEECCHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 7755 77889999999873 236999999999988754
Q ss_pred H
Q 025676 239 A 239 (249)
Q Consensus 239 ~ 239 (249)
.
T Consensus 235 ~ 235 (259)
T 1q5q_A 235 E 235 (259)
T ss_dssp C
T ss_pred h
Confidence 3
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=8.4e-50 Score=342.41 Aligned_cols=215 Identities=14% Similarity=0.177 Sum_probs=191.5
Q ss_pred CCCCcch-hhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccCCCCCceEEecCcEEEEEecChhHHHHHHHHHHH
Q 025676 16 SPDGRVF-QIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKS 94 (249)
Q Consensus 16 speGrl~-Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~ 94 (249)
|||.-.- ++|||.+|+++|+|+|||+++||||||+|+| .++.+|||+|++||+|+++|..+|++.|.+.++.
T Consensus 8 ~p~~~~~~r~EYA~~av~~GtT~vgi~~kdgVVlaadkr-------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~ 80 (248)
T 3mi0_A 8 SPEQAMRERSELARKGIARAKSVVALAYAGGVLFVAENP-------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQ 80 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCCEEEEEETTEEEEEEECC-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHH
T ss_pred CHHHhcccchHHHHHHHhCCCcEEEEEeCCEEEEEEeCC-------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHH
Confidence 5654433 6899999999999999999999999999998 2467999999999999999999999999999999
Q ss_pred HHHHhHHHhC-CCCCHHHHHHHHH-HHHHHhcccccccccceeeEEEEEeC----CCcEEEEECCCCceee-ecEEEecC
Q 025676 95 EATNYESVYG-EPIPVKELAQRVA-SYVHLCTLYWWLRPFGCGVILGGYDR----DGPQLYMIEPSGISYR-YFGAAIGK 167 (249)
Q Consensus 95 ~~~~~~~~~~-~~~~~~~la~~ls-~~~~~~t~~~~~rp~~vs~il~G~d~----~gp~Ly~idp~G~~~~-~~~~a~G~ 167 (249)
+++.|+++++ .+++++.++++++ .+.|.||+ ++|||+|++||||||+ +||+||++||+|++.+ ++++|+|+
T Consensus 81 ~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gs 158 (248)
T 3mi0_A 81 FADTRGYAYDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGG 158 (248)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESS
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECc
Confidence 9999999999 9999999999999 77788987 6899999999999998 7899999999999995 99999999
Q ss_pred ChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhh-------hccCCCCceEEEEEEEeCC-CCcEEeCCHHHHHHHHHHH
Q 025676 168 GRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVH-------DEAKDKAFELEMSWVCDES-NRQHQKVPDELLEEAKAAA 239 (249)
Q Consensus 168 ~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~-------~~~~~~~~~iei~iv~~~~-~~~~~~~~~~ei~~~~~~~ 239 (249)
+++.++++||+.|+++||++||++++++||..+. ++ ..++..+||++|++++ .+.|++++++||++++.+.
T Consensus 159 gs~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~-~~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~~ 237 (248)
T 3mi0_A 159 TTEPIANALKESYAENASLTDALRIAVAALRAGSADTSGGDQP-TLGVASLEVAVLDANRPRRAFRRITGSALQALLVDQ 237 (248)
T ss_dssp CHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC---
T ss_pred cHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCccc-ccCCCcEEEEEEECCCCcccEEECCHHHHHHHHHHc
Confidence 9999999999999999999999999999999998 44 4566779999999874 3469999999999999875
Q ss_pred H
Q 025676 240 R 240 (249)
Q Consensus 240 ~ 240 (249)
.
T Consensus 238 ~ 238 (248)
T 3mi0_A 238 E 238 (248)
T ss_dssp -
T ss_pred C
Confidence 3
No 21
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=3.2e-47 Score=320.81 Aligned_cols=208 Identities=19% Similarity=0.348 Sum_probs=188.1
Q ss_pred HhhhcCCcEEEEEeCCEEEEEEEccCCCCCcc-CCCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCC
Q 025676 29 KAVDNSGTVIGIKCKDGIVMGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 107 (249)
Q Consensus 29 ~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 107 (249)
+++++|+|+|||+++||||||+|+|.+++.++ .++.+||++|+++++|+++|..+|++.+.++++.+++.|++++++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (217)
T 1yar_H 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNM 82 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 57889999999999999999999999987554 46689999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCHH
Q 025676 108 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR 187 (249)
Q Consensus 108 ~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~ 187 (249)
+++.+++++++.+|.++ .|||++++|+|||| +||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++
T Consensus 83 ~v~~la~~l~~~~~~~r----~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~e 157 (217)
T 1yar_H 83 PIEAVATLLSNMLNQVK----YMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVD 157 (217)
T ss_dssp CHHHHHHHHHHHHHHTT----TSCCCEEEEEEEES-SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHH
T ss_pred CHHHHHHHHHHHHHhcC----CCCceEEEEEEEEC-CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHH
Confidence 99999999999998752 78999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHHHhh
Q 025676 188 QGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAAL 243 (249)
Q Consensus 188 eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~~~~ 243 (249)
||++++++||..+.+++..++.+++|++|+++. .+++++++|+++++.....-|
T Consensus 158 ea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~--g~~~~~~~ei~~~~~~~~~~~ 211 (217)
T 1yar_H 158 EGVDLVIRAISAAKQRDSASGGMIDVAVITRKD--GYVQLPTDQIESRIRKLGLIL 211 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTT--EEEECCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHhccCCCCCcEEEEEEECCC--CEEEcCHHHHHHHHHHHHHHH
Confidence 999999999999999876677789999999732 399999999999998765443
No 22
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=8e-47 Score=318.84 Aligned_cols=203 Identities=20% Similarity=0.317 Sum_probs=188.3
Q ss_pred CCcEEEEEeCCEEEEEEEccCCCCCcc-CCCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHH
Q 025676 34 SGTVIGIKCKDGIVMGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKEL 112 (249)
Q Consensus 34 G~t~Igi~~~dgVvla~d~~~~~~~~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 112 (249)
|+|+|||+++||||||+|+|.+++.++ .++.+|||+|++||+|+++|..+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 789999999999999999999998665 4567999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceeeec-EEEecCChHHHHHHHHhcCCCCCCHHHHH
Q 025676 113 AQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYF-GAAIGKGRQAAKTEIEKLKLSEMTCRQGV 190 (249)
Q Consensus 113 a~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~~~-~~a~G~~~~~~~~~Le~~~~~~ls~~eai 190 (249)
++++++.+|.++ +|||+|++||||||+ +||+||++||+|++.+++ ++|+|+++++++++||+.|+++||++||+
T Consensus 81 a~~l~~~~~~~~----~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~ 156 (219)
T 3h4p_a 81 ATLLSNILHSSR----MFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGI 156 (219)
T ss_dssp HHHHHHHHHHTT----TTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHH
T ss_pred HHHHHHHHHHhc----CCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 999999998773 689999999999998 789999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHHHhh
Q 025676 191 IEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAAL 243 (249)
Q Consensus 191 ~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~~~~ 243 (249)
+++++||..+.+++..++.+++|++|+++ .+++++++||++++..+...-
T Consensus 157 ~la~~al~~~~~rd~~sg~~i~v~vi~~~---g~~~l~~~ei~~~l~~~~~~~ 206 (219)
T 3h4p_a 157 KLALNALKSAMERDTFSGNGISLAVITKD---GVKIFEDEEIEKILDSMKAKP 206 (219)
T ss_dssp HHHHHHHHHHHTSCSSCCSCCCEEEEETT---EEEECCHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEeCC---CeEEcCHHHHHHHHHHhhccc
Confidence 99999999999998777788999999975 499999999999998765543
No 23
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=7.1e-46 Score=309.19 Aligned_cols=198 Identities=22% Similarity=0.320 Sum_probs=185.4
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCcc-CCCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELA 113 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (249)
+|+|||+++||||||+|+|.+++.++ .++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++|+++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999997554 46679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeec-EEEecCChHHHHHHHHhcCCCCCCHHHHHHH
Q 025676 114 QRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYF-GAAIGKGRQAAKTEIEKLKLSEMTCRQGVIE 192 (249)
Q Consensus 114 ~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~-~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l 192 (249)
+++++.+|.++ .|||++++|+||||++||+||.+||+|++.+++ ++|+|+|+++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~r----~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l 156 (202)
T 1j2q_H 81 TLTSNLLNSYR----YFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVEL 156 (202)
T ss_dssp HHHHHHHHHTT----TSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhhC----CCCceEEEEEEEEeCCCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHH
Confidence 99999998752 789999999999999899999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHH
Q 025676 193 VAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAA 239 (249)
Q Consensus 193 ~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~ 239 (249)
+++||..+.+++..++.+++|++|+++ .+++++++|++++++..
T Consensus 157 a~~al~~~~~~d~~s~~~i~v~vi~~~---g~~~l~~~ei~~~~~~~ 200 (202)
T 1j2q_H 157 AVRAIYSAMKRDSASGDGIDVVKITED---EFYQYSPEEVEQILAKF 200 (202)
T ss_dssp HHHHHHHHHTTCTTSCSCEEEEEECSS---CEEECHHHHHHHHGGGT
T ss_pred HHHHHHHHHhcCCCCCCcEEEEEEeCC---CeEEeCHHHHHHHHHHh
Confidence 999999999997677788999999875 38999999999998653
No 24
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=5.3e-46 Score=324.82 Aligned_cols=214 Identities=14% Similarity=0.151 Sum_probs=192.1
Q ss_pred hHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccC-CCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhC
Q 025676 26 YAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYG 104 (249)
Q Consensus 26 ya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 104 (249)
++..++++|+|+|||+++||||||+|+|.+.+.++. ++.+||++|+++++|+++|..+|++.+.++++.+++.|+++++
T Consensus 67 ~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~ 146 (287)
T 3nzj_K 67 DCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREK 146 (287)
T ss_dssp ---------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567899999999999999999999999999977654 5679999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEe-CCCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCC
Q 025676 105 EPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSE 183 (249)
Q Consensus 105 ~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d-~~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ 183 (249)
++++++.+++++++++|.|++ +||++++|||||| ++||+||++||+|++.+++++|+|+|+.+++++||+.|+++
T Consensus 147 ~~isv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~d 222 (287)
T 3nzj_K 147 ERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWD 222 (287)
T ss_dssp SCCCHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTT
T ss_pred CCCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCC
Confidence 999999999999999998864 4999999999999 57899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHHHhhhhc
Q 025676 184 MTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALEEM 246 (249)
Q Consensus 184 ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~ 246 (249)
||++||++++++||..+.+++..++.+++|++|+++ .+++++++|+++++....+...++
T Consensus 223 ms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkd---g~~~l~~~ev~~~l~~~~e~~~~~ 282 (287)
T 3nzj_K 223 LSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTED---GWIYHGNHDVGELFWKVKEEEGSF 282 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETT---EEEEEEEEEHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCC---CEEEeCHHHHHHHHHHHHHhhccc
Confidence 999999999999999999998788889999999986 399999999999998887765554
No 25
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=2.9e-45 Score=321.15 Aligned_cols=211 Identities=18% Similarity=0.209 Sum_probs=193.2
Q ss_pred HHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCcc-CCCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCC
Q 025676 27 AAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGE 105 (249)
Q Consensus 27 a~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 105 (249)
|.+|+++|+|+|||+++||||||+|+|.+++.++ .++.+|||+|+++++|+++|..+|++.+.++++.+++.|++++++
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 8899999999999999999999999999987555 466799999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCC-C-----cEEEEECCCCceeee--cEEEecCChHHHHHHHH
Q 025676 106 PIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD-G-----PQLYMIEPSGISYRY--FGAAIGKGRQAAKTEIE 177 (249)
Q Consensus 106 ~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~-g-----p~Ly~idp~G~~~~~--~~~a~G~~~~~~~~~Le 177 (249)
+++++.++++|++++|.++++. +|||+|++||||||++ | |+||++||+|++.++ +++|+|+|+++++++||
T Consensus 138 ~isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le 216 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALK 216 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHH
Confidence 9999999999999999988764 8999999999999975 6 999999999999999 99999999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHhhhccCCCCce--E-----EEEEEEeCCCCcEEeCCHHHHHHHHHHHHH
Q 025676 178 KLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFE--L-----EMSWVCDESNRQHQKVPDELLEEAKAAARA 241 (249)
Q Consensus 178 ~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~--i-----ei~iv~~~~~~~~~~~~~~ei~~~~~~~~~ 241 (249)
+.|+++||++||++++++||..+.+++..++.. + ||++|+++ .+++++++|++++++...+
T Consensus 217 ~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~---g~~~l~~~ei~~~l~~i~~ 284 (294)
T 1q5r_H 217 KIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQA---GAVHVSEETTSELARRIVA 284 (294)
T ss_dssp HHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETT---EEEECCHHHHHHHHHHHCC
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECC---CEEEcCHHHHHHHHHHHHH
Confidence 999999999999999999999999987554432 5 89999864 3899999999999987743
No 26
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=3.9e-45 Score=306.92 Aligned_cols=204 Identities=15% Similarity=0.158 Sum_probs=189.5
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCcc-CCCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELA 113 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (249)
+|+|||+++||||||+|+|.+++.++ .++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 58999999999999999999997554 46689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccceeeEEEEEe-CCCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCHHHHHHH
Q 025676 114 QRVASYVHLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIE 192 (249)
Q Consensus 114 ~~ls~~~~~~t~~~~~rp~~vs~il~G~d-~~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l 192 (249)
+++++.+|.|++. ||++++|+||+| ++||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~~~----p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 156 (212)
T 1ryp_L 81 KILSNLVYQYKGA----GLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYL 156 (212)
T ss_dssp HHHHHHHHHTTTS----CCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhhCCC----CceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHH
Confidence 9999999998753 999999999999 57899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHHHhhhh
Q 025676 193 VAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALEE 245 (249)
Q Consensus 193 ~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~~~~~~ 245 (249)
+++||..+.+++..++.+++|++|+++ .+++++++|+++++....+.-++
T Consensus 157 a~~al~~~~~rd~~s~~~i~v~vi~~~---g~~~~~~~ei~~~~~~~~~~~~~ 206 (212)
T 1ryp_L 157 GKRSILAAAHRDAYSGGSVNLYHVTED---GWIYHGNHDVGELFWKVKEEEGS 206 (212)
T ss_dssp HHHHHHHHHHHBTTCCSEEEEEEEETT---EEEEEEEEEHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhccccCCceEEEEEcCC---ceEEECHHHHHHHHHHHHHhhhh
Confidence 999999999998778889999999864 38999999999998877654443
No 27
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=3.2e-45 Score=320.57 Aligned_cols=232 Identities=17% Similarity=0.187 Sum_probs=172.7
Q ss_pred CCCCCCCcccCCCCcc-----hh--hhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccC-CCCCceEEecCcEEEE
Q 025676 6 TGYDLSVTTFSPDGRV-----FQ--IEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLP-GSNRRIHSVHRHSGMA 77 (249)
Q Consensus 6 ~~yd~~~t~fspeGrl-----~Q--~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~-~~~~Ki~~i~~~i~~~ 77 (249)
++|+..+...+||.-. +| +|||.+ +++|+|+|||+++||||||+|+|++++.++. ++.+|||+|++|++|+
T Consensus 23 ~~f~~~~~~~~~~~l~~~~~~~~~~~~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~ 101 (291)
T 2jay_A 23 SSFTDFLRRQAPELLPASISGGAPLAGGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATG 101 (291)
T ss_dssp ------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEE
T ss_pred ccHHHHhhhcChhhccccccccCcCcccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEE
Confidence 4566667777777443 22 689999 9999999999999999999999999996664 4679999999999999
Q ss_pred EecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCC-C-----cEEEEE
Q 025676 78 VAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD-G-----PQLYMI 151 (249)
Q Consensus 78 ~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~-g-----p~Ly~i 151 (249)
++|..+|++.+.++++.+++.|++.++.+++++.+++++++++|.+++ ..+|||+|++||||||++ + |+||++
T Consensus 102 ~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~i 180 (291)
T 2jay_A 102 IAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDIHASDPQSAGRIVSF 180 (291)
T ss_dssp EESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECTTCSCSTTCEEEEEE
T ss_pred EcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeCCCCcCCCCCEEEEE
Confidence 999999999999999999999999999999999999999999998865 457899999999999975 4 899999
Q ss_pred CCCCcee--eecEEEecCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCce--E-----EEEEEEeCCCC
Q 025676 152 EPSGISY--RYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFE--L-----EMSWVCDESNR 222 (249)
Q Consensus 152 dp~G~~~--~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~--i-----ei~iv~~~~~~ 222 (249)
||+|++. +++++|+|+|+++++++||+.|+++||++||++++++||..+.+++..++.. + +|++|+++
T Consensus 181 Dp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~d--- 257 (291)
T 2jay_A 181 DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDAD--- 257 (291)
T ss_dssp CTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETT---
T ss_pred CCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECC---
Confidence 9999998 8999999999999999999999999999999999999999999986544432 2 69999875
Q ss_pred cEEeCCHHHHHHHHHHHHHh
Q 025676 223 QHQKVPDELLEEAKAAARAA 242 (249)
Q Consensus 223 ~~~~~~~~ei~~~~~~~~~~ 242 (249)
.+++++++|+++++..+.+.
T Consensus 258 g~~~l~~~ei~~~~~~~~~~ 277 (291)
T 2jay_A 258 GAVDVPESRIAELARAIIES 277 (291)
T ss_dssp EEEECCHHHHHHHHHHC---
T ss_pred CeEEcCHHHHHHHHHHHHHh
Confidence 38999999999999877544
No 28
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=5.2e-45 Score=304.39 Aligned_cols=198 Identities=16% Similarity=0.198 Sum_probs=186.1
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCcc-CCCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELA 113 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (249)
+|+|||+++||||||+|+|.+++.++ .++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999997555 45679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCHHHHHHHH
Q 025676 114 QRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEV 193 (249)
Q Consensus 114 ~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l~ 193 (249)
+++++.+|.|++ +||++++|+||||++||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||++++
T Consensus 81 ~~l~~~~~~~r~----~~~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~ 156 (204)
T 1iru_L 81 KLLANMVYQYKG----MGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLA 156 (204)
T ss_dssp HHHHHHHHTTTT----SCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHhCC----CCeeEEEEEEEEeCCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 999999998753 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHH
Q 025676 194 AKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAA 239 (249)
Q Consensus 194 ~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~ 239 (249)
++||..+.+++..++.+++|++|+++ .++.++++|+++++.+.
T Consensus 157 ~~al~~~~~rd~~s~~~i~v~vi~~~---g~~~l~~~ei~~~~~~~ 199 (204)
T 1iru_L 157 RRAIYQATYRDAYSGGAVNLYHVRED---GWIRVSSDNVADLHEKY 199 (204)
T ss_dssp HHHHHHHHHHBTTCCSEEEEEEECSS---CEEEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHhCccCCCceEEEEEeCC---ceEEeCHHHHHHHHHHh
Confidence 99999999987677888999999864 38999999999999876
No 29
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=2e-45 Score=307.12 Aligned_cols=197 Identities=15% Similarity=0.181 Sum_probs=184.0
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCcc-CCCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELA 113 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (249)
+|+|||+++||||||+|+|.+++.++ .++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999554 45679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCHHHHHHH
Q 025676 114 QRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIE 192 (249)
Q Consensus 114 ~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l 192 (249)
+++++.+|.|++ ||++++|+||||+ +||+||.+||+|++.+++++++|+|+++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~~-----p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l 155 (205)
T 1iru_H 81 SLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQF 155 (205)
T ss_dssp HHHHHHHHHTTT-----TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhcCc-----CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999998864 9999999999997 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHH
Q 025676 193 VAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKA 237 (249)
Q Consensus 193 ~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~ 237 (249)
+++||..+.+++..++.+++|++|+++ +..+++++++|+++++.
T Consensus 156 ~~~al~~~~~~d~~s~~~i~v~vi~~~-g~~~~~l~~~ei~~~~~ 199 (205)
T 1iru_H 156 TANALALAMERDGSSGGVIRLAAIAES-GVERQVLLGDQIPKFAV 199 (205)
T ss_dssp HHHHHHHHHHHBTTCCSCEEEEEEETT-EEEEEEECGGGSCCCCC
T ss_pred HHHHHHHHHHhccccCCcEEEEEEeCC-CeEEEEeChHHhhHHHh
Confidence 999999999997777888999999976 33489999999987654
No 30
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=8.9e-46 Score=312.31 Aligned_cols=201 Identities=14% Similarity=0.130 Sum_probs=186.1
Q ss_pred HhhhcCCcEEEEEeCCEEEEEEEccCCCCCccC-CCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHH-HhCCC
Q 025676 29 KAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYES-VYGEP 106 (249)
Q Consensus 29 ~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~ 106 (249)
+|+++|+|+|||+++||||||+|+|.+.+.++. ++.+||++|++|++|+++|..+|++.+.++++.+++.|++ +++.+
T Consensus 3 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (219)
T 1iru_N 3 NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHS 82 (219)
T ss_dssp SCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred CCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 678999999999999999999999999876654 6679999999999999999999999999999999999998 99999
Q ss_pred CCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCC--CC
Q 025676 107 IPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLS--EM 184 (249)
Q Consensus 107 ~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~--~l 184 (249)
++++.+++++++.++ +++.++|||++++|+||+|++||+||.+||+|++.+++++|+|+|+++++++||+.|++ +|
T Consensus 83 ~~v~~la~~l~~~ly--~~r~~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~m 160 (219)
T 1iru_N 83 YSPRAIHSWLTRAMY--SRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVL 160 (219)
T ss_dssp CCHHHHHHHHHHHHH--HHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCC
T ss_pred CCHHHHHHHHHHHHH--HhcccCCCceEEEEEEEEECCCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCCC
Confidence 999999999999985 55667899999999999998899999999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHH
Q 025676 185 TCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEE 234 (249)
Q Consensus 185 s~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~ 234 (249)
|++||++++++||..+.+++..++.+++|++|+++ .++.+++++++.
T Consensus 161 t~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~---g~~~~~~~~i~~ 207 (219)
T 1iru_N 161 SQTEARDLVERCMRVLYYRDARSYNRFQTATVTEK---GVEIEGPLSTET 207 (219)
T ss_dssp CHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETT---EEEEEEEECCCC
T ss_pred CHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCC---CEEEcCCeeccc
Confidence 99999999999999999997777888999999875 278877776653
No 31
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=2.8e-44 Score=306.32 Aligned_cols=205 Identities=18% Similarity=0.214 Sum_probs=188.0
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCcc-CCCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELA 113 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (249)
+|+|||+++||||||+|+|.+.+.++ .++.+||++|+++++|+++|..+|++.+.++++.+++.|+++++.+|+++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 68999999999999999999986555 46679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccceeeEEEEEeCC-C-----cEEEEECCCCceeee--cEEEecCChHHHHHHHHhcCCCCCC
Q 025676 114 QRVASYVHLCTLYWWLRPFGCGVILGGYDRD-G-----PQLYMIEPSGISYRY--FGAAIGKGRQAAKTEIEKLKLSEMT 185 (249)
Q Consensus 114 ~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~-g-----p~Ly~idp~G~~~~~--~~~a~G~~~~~~~~~Le~~~~~~ls 185 (249)
++|++++|.++++. +|||+|++||||||++ | |+||.+||+|++.++ +++|+|+|+++++++||+.|+++||
T Consensus 81 ~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms 159 (235)
T 1q5q_H 81 NRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSD 159 (235)
T ss_dssp HHHHHHHHTTHHHH-TTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHHhh-hcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCC
Confidence 99999999988764 8999999999999975 7 999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCce--E-----EEEEEEeCCCCcEEeCCHHHHHHHHHHHHHhh
Q 025676 186 CRQGVIEVAKIIYGVHDEAKDKAFE--L-----EMSWVCDESNRQHQKVPDELLEEAKAAARAAL 243 (249)
Q Consensus 186 ~~eai~l~~~~l~~~~~~~~~~~~~--i-----ei~iv~~~~~~~~~~~~~~ei~~~~~~~~~~~ 243 (249)
++||++++++||..+.+++..++.+ + ||++|+++ .+++++++|+++++....+.-
T Consensus 160 ~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~---g~~~l~~~ei~~~~~~~~~~~ 221 (235)
T 1q5q_H 160 EETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQA---GAVHVSEETTSELARRIVAER 221 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETT---EEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCC---CeEEeCHHHHHHHHHHHHHHH
Confidence 9999999999999999987554432 2 89999864 389999999999999876543
No 32
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=1.5e-45 Score=313.74 Aligned_cols=203 Identities=14% Similarity=0.160 Sum_probs=186.7
Q ss_pred HhhhcCCcEEEEEeCCEEEEEEEccCCCCCccC-CCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHH-----H
Q 025676 29 KAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYES-----V 102 (249)
Q Consensus 29 ~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~ 102 (249)
+|+++|+|+|||+++||||||+|+|.+.+.++. ++.+||++|++|++|+++|..+|++.+.++++.+++.|++ +
T Consensus 3 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (233)
T 1ryp_N 3 QPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLAD 82 (233)
T ss_dssp CCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTT
T ss_pred ccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 578999999999999999999999999876554 5679999999999999999999999999999999999999 9
Q ss_pred hCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCC-CcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCC
Q 025676 103 YGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKL 181 (249)
Q Consensus 103 ~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~-gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~ 181 (249)
++.+++++.+++++++.+ |+++.++|||++++||||+|++ ||+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 83 ~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 160 (233)
T 1ryp_N 83 AEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVD 160 (233)
T ss_dssp TTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCS
T ss_pred cCCCCCHHHHHHHHHHHH--HHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhc
Confidence 999999999999999998 4566678999999999999985 8999999999999999999999999999999999999
Q ss_pred C-----CCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHH
Q 025676 182 S-----EMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEA 235 (249)
Q Consensus 182 ~-----~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~ 235 (249)
+ +||++||++++++||..+.+++..++.+++|++|+++. .++.+++++++++
T Consensus 161 ~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~--g~~~~~~~~i~~~ 217 (233)
T 1ryp_N 161 RESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNT--GLTFKKNLQVENM 217 (233)
T ss_dssp SGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTT--EEEEEEEEECCSC
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCC--CeEEcChHhcccc
Confidence 9 99999999999999999999987788899999998752 3778777766543
No 33
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=2.1e-44 Score=301.07 Aligned_cols=187 Identities=17% Similarity=0.198 Sum_probs=176.4
Q ss_pred HHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccC-CCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCC
Q 025676 28 AKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEP 106 (249)
Q Consensus 28 ~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 106 (249)
.+|+++|+|+|||+++||||||+|+|.+++.++. ++.+||++|++|++|+++|..+|++.+.++++.+++.|++++++
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~- 81 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT- 81 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 5789999999999999999999999999995554 56799999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCC
Q 025676 107 IPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMT 185 (249)
Q Consensus 107 ~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls 185 (249)
++++.+++++++.+|.|+++ |++++|+||+|+ +||+||.+||+|++.+++++|+|+|+++++++||+.|+++||
T Consensus 82 ~~v~~la~~l~~~~~~~~~~-----~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s 156 (205)
T 1ryp_H 82 PSTETAASVFKELCYENKDN-----LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMS 156 (205)
T ss_dssp CCHHHHHHHHHHHHHHTTTT-----CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCC
T ss_pred CCHHHHHHHHHHHHHhhhcC-----ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCC
Confidence 99999999999999998752 999999999997 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCC
Q 025676 186 CRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDES 220 (249)
Q Consensus 186 ~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~ 220 (249)
++||++++++||..+.+++..++.+++|++|++++
T Consensus 157 ~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g 191 (205)
T 1ryp_H 157 KEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAG 191 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE
T ss_pred HHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCC
Confidence 99999999999999999977778889999999763
No 34
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=1.2e-43 Score=298.11 Aligned_cols=185 Identities=14% Similarity=0.221 Sum_probs=175.0
Q ss_pred hhcCCcEEEEEeCCEEEEEEEccCCCCCccC-CCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCH
Q 025676 31 VDNSGTVIGIKCKDGIVMGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPV 109 (249)
Q Consensus 31 ~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 109 (249)
+++|+|+|||+++||||||+|+|.++++++. ++.+||++|++|++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 85 (213)
T 1iru_M 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT 85 (213)
T ss_dssp CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 6789999999999999999999999999876 467999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccccceeeEEEEEeCCC-cEEEEECCCCceeeecEEEecCChHHHHHHHHhc---------
Q 025676 110 KELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKL--------- 179 (249)
Q Consensus 110 ~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~g-p~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~--------- 179 (249)
+.+|+++++.+ |+++ .|||++++|+||+|++| |+||.+||+|++.+++++|+|+|+++++++||+.
T Consensus 86 ~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~ 161 (213)
T 1iru_M 86 GAIAAMLSTIL--YSRR--FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNV 161 (213)
T ss_dssp HHHHHHHHHHH--HHTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSC
T ss_pred HHHHHHHHHHH--HhhC--CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhcccccccccc
Confidence 99999999998 5554 78999999999999754 9999999999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeC
Q 025676 180 KLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDE 219 (249)
Q Consensus 180 ~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~ 219 (249)
|+++||++||++++++||..+.+++..++.+++|++|+++
T Consensus 162 ~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~ 201 (213)
T 1iru_M 162 EHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKE 201 (213)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCC
Confidence 8889999999999999999999998778899999999976
No 35
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=1e-43 Score=306.67 Aligned_cols=189 Identities=17% Similarity=0.178 Sum_probs=171.9
Q ss_pred HHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccC-CCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCC
Q 025676 27 AAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGE 105 (249)
Q Consensus 27 a~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 105 (249)
..+|+++|+|+|||+++||||||+|+|.+++.++. ++.+|||+|++|++|+++|..+|++.+.++++.+++.|++++++
T Consensus 22 ~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~ 101 (261)
T 3nzj_H 22 QPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSR 101 (261)
T ss_dssp --------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCC
Confidence 36899999999999999999999999999987665 56799999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCC
Q 025676 106 PIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMT 185 (249)
Q Consensus 106 ~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls 185 (249)
+++++.+++++++.++.| .+||++++||||+|++||+||++||+|++.+++++|+|+|++.++++||+.|+++||
T Consensus 102 ~~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms 176 (261)
T 3nzj_H 102 EPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLT 176 (261)
T ss_dssp CCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeCCCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCCC
Confidence 999999999999988654 479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCC
Q 025676 186 CRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDES 220 (249)
Q Consensus 186 ~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~ 220 (249)
++||++++++||..+.+++..++.+++|++|++++
T Consensus 177 ~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg 211 (261)
T 3nzj_H 177 KEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGK 211 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTS
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCC
Confidence 99999999999999999877778889999999874
No 36
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=1.6e-43 Score=294.04 Aligned_cols=189 Identities=17% Similarity=0.250 Sum_probs=175.9
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCccC-CCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELA 113 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (249)
+|+|||+++||||||+|+|.++++++. ++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 689999999999999999999998875 4679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccceeeEEEEEeC--CCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCHHHHHH
Q 025676 114 QRVASYVHLCTLYWWLRPFGCGVILGGYDR--DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVI 191 (249)
Q Consensus 114 ~~ls~~~~~~t~~~~~rp~~vs~il~G~d~--~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~ 191 (249)
+++++.+|.+++. ++||++++|+||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||++
T Consensus 82 ~~l~~~l~~~~~~--r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~ 159 (198)
T 1ryp_K 82 SFVRQELAKSIRS--RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLD 159 (198)
T ss_dssp HHHHHHHHHHTTS--SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHHhccc--CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHH
Confidence 9999999988732 359999999999995 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCC
Q 025676 192 EVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 228 (249)
Q Consensus 192 l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~ 228 (249)
++++||..+.+++..++.+++|++|+++ .++.++
T Consensus 160 l~~~al~~~~~~d~~s~~~i~v~vi~~~---g~~~~~ 193 (198)
T 1ryp_K 160 LLKLCVQELEKRMPMDFKGVIVKIVDKD---GIRQVD 193 (198)
T ss_dssp HHHHHHHHHHHHCSBCCCCEEEEEEETT---EEEEEC
T ss_pred HHHHHHHHHHHhCccCCCceEEEEEcCC---CEEEec
Confidence 9999999999997777888999999875 256554
No 37
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=6e-44 Score=303.86 Aligned_cols=190 Identities=20% Similarity=0.226 Sum_probs=177.2
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCccC-CCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELA 113 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (249)
+|+|||+++||||||+|+|.++++++. ++.+|||+|++||+|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 689999999999999999999998775 5679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCHHHHHHHH
Q 025676 114 QRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEV 193 (249)
Q Consensus 114 ~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l~ 193 (249)
+++++.++.| .+||++++||||+|++||+||++||+|++.+++++|+|+|+++++++||+.|+++||++||++++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la 155 (234)
T 3unf_H 81 RILRQTLFRY-----QGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELL 155 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHH
T ss_pred HHHHHHHHhc-----CCCccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHH
Confidence 9999998765 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHH
Q 025676 194 AKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELL 232 (249)
Q Consensus 194 ~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei 232 (249)
++||..+.+++..++.+++|++|++++ ++++++.++
T Consensus 156 ~~al~~~~~~D~~sg~~iev~vi~~dg---~~~l~~~~i 191 (234)
T 3unf_H 156 VEAITAGILSDLGSGGNVDACVITAGG---AKLQRALST 191 (234)
T ss_dssp HHHHHHHHHHBTTCCSCEEEEEEESSC---EEEEEEEEC
T ss_pred HHHHHHHHhhcCCCCCcEEEEEEECCC---EEEeCceec
Confidence 999999999877788899999999862 566655544
No 38
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=5.2e-45 Score=316.09 Aligned_cols=209 Identities=13% Similarity=0.154 Sum_probs=188.7
Q ss_pred hhhhHHHhhhcCCcEEEEEeCCEEEEEEEccCCCCCccC-CCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHH
Q 025676 23 QIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYES 101 (249)
Q Consensus 23 Q~eya~~a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 101 (249)
..+.+.+|+++|+|+|||+++||||||+|+|.+.+.++. ++.+||++|+++++|+++|..+|++.|.+++|.+++.|++
T Consensus 30 ~~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~ 109 (266)
T 1g0u_M 30 PMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAY 109 (266)
T ss_dssp ----CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhh
Confidence 356678899999999999999999999999999876554 5679999999999999999999999999999999999998
Q ss_pred -----HhCCCCCHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCC-CcEEEEECCCCceeeecEEEecCChHHHHHH
Q 025676 102 -----VYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTE 175 (249)
Q Consensus 102 -----~~~~~~~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~-gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~ 175 (249)
+++.+++++.+++++++.+ |+++.++|||+|++||||+|++ ||+||.+||+|++.+++++|+|+|+.+++++
T Consensus 110 ~~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~ 187 (266)
T 1g0u_M 110 DNPLADAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPL 187 (266)
T ss_dssp TCTTTTTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHH
T ss_pred ccchhhcCCCCCHHHHHHHHHHHH--HHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHH
Confidence 9999999999999999998 5566678999999999999975 8999999999999999999999999999999
Q ss_pred HHhcCCC-----CCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHH
Q 025676 176 IEKLKLS-----EMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEA 235 (249)
Q Consensus 176 Le~~~~~-----~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~ 235 (249)
||+.|++ +||++||++++++||..+.+++..++.+++|++|+++. .++.++++|++++
T Consensus 188 Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~--g~~~~~~~ei~~~ 250 (266)
T 1g0u_M 188 LRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNT--GLTFKKNLQVENM 250 (266)
T ss_dssp HTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTT--EEEEEEEEECCCC
T ss_pred HHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCC--CeEEcCHHHhhhh
Confidence 9999999 99999999999999999999987788899999999752 2778777766543
No 39
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=6.1e-43 Score=292.05 Aligned_cols=186 Identities=17% Similarity=0.179 Sum_probs=174.0
Q ss_pred hhcCCcEEEEEeCCEEEEEEEccCCCCCccCC-CCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCH
Q 025676 31 VDNSGTVIGIKCKDGIVMGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPV 109 (249)
Q Consensus 31 ~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~-~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 109 (249)
+.+|+|+|||+++||||||+|+|.++++++.+ +.+||++|++|++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP 84 (205)
T ss_dssp TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 46899999999999999999999999998876 67999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccccceeeEEEEEeC--CCcEEEEECCCCceeee-cEEEecCChHHHHHHHHhcCCCCCCH
Q 025676 110 KELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR--DGPQLYMIEPSGISYRY-FGAAIGKGRQAAKTEIEKLKLSEMTC 186 (249)
Q Consensus 110 ~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~--~gp~Ly~idp~G~~~~~-~~~a~G~~~~~~~~~Le~~~~~~ls~ 186 (249)
+.+++++++.+ |+++ ..||++++|+||+|+ +||+||.+||+|++.++ +++|+|+|+++++++||+.|+++||+
T Consensus 85 ~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 160 (205)
T 1iru_J 85 YTLMSMVANLL--YEKR--FGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP 160 (205)
T ss_dssp HHHHHHHHHHH--HTTT--TSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHHHHH--HHhc--CCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCH
Confidence 99999999998 6655 349999999999994 78999999999998665 66999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCC
Q 025676 187 RQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDES 220 (249)
Q Consensus 187 ~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~ 220 (249)
+||++++++||..+.+++..++.+++|++|++++
T Consensus 161 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g 194 (205)
T 1iru_J 161 DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDK 194 (205)
T ss_dssp HHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSB
T ss_pred HHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCC
Confidence 9999999999999999987778889999999863
No 40
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=1.1e-42 Score=290.29 Aligned_cols=186 Identities=14% Similarity=0.144 Sum_probs=173.9
Q ss_pred hhhcCCcEEEEEeCCEEEEEEEccCCCCCccCC-CCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCC
Q 025676 30 AVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIP 108 (249)
Q Consensus 30 a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~~-~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 108 (249)
.+.+|+|+|||+++||||||+|+|.+.++++.+ +.+||++|+ |++|+++|..+|++.+.++++.+++.|+++++++++
T Consensus 4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 82 (204)
T 1ryp_J 4 SSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIE 82 (204)
T ss_dssp GGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 367899999999999999999999999998876 679999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccccceeeEEEEEeC--CCcEEEEECCCCceeee-cEEEecCChHHHHHHHHhcCCCCCC
Q 025676 109 VKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR--DGPQLYMIEPSGISYRY-FGAAIGKGRQAAKTEIEKLKLSEMT 185 (249)
Q Consensus 109 ~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~--~gp~Ly~idp~G~~~~~-~~~a~G~~~~~~~~~Le~~~~~~ls 185 (249)
++.+++++++.+ |+++. .||++++|+||||+ +||+||.+||+|++.++ +++|+|+|+++++++||+.|+++||
T Consensus 83 v~~la~~l~~~~--y~~~~--~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s 158 (204)
T 1ryp_J 83 PETFTQLVSSSL--YERRF--GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLE 158 (204)
T ss_dssp HHHHHHHHHHHH--HTTTT--SCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCC
T ss_pred HHHHHHHHHHHH--HHhcC--CCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcC
Confidence 999999999998 66653 39999999999995 78999999999998665 6799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCC
Q 025676 186 CRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDES 220 (249)
Q Consensus 186 ~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~ 220 (249)
++||++++++||..+.+++..++.+++|++|++++
T Consensus 159 ~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g 193 (204)
T 1ryp_J 159 PEDLFETISQALLNAADRDALSGWGAVVYIIKKDE 193 (204)
T ss_dssp HHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSC
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCC
Confidence 99999999999999999977778889999999863
No 41
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=8.5e-43 Score=294.74 Aligned_cols=186 Identities=19% Similarity=0.246 Sum_probs=174.3
Q ss_pred hhhcCCcEEEEEeCCEEEEEEEccCCCCCccC-CCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhC-CCC
Q 025676 30 AVDNSGTVIGIKCKDGIVMGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYG-EPI 107 (249)
Q Consensus 30 a~~~G~t~Igi~~~dgVvla~d~~~~~~~~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~ 107 (249)
.+++|+|+|||+++||||||+|+|.+.++++. ++.+|||+|+++++|+++|..+|++.+.++++.+++.|+++++ +++
T Consensus 5 ~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 84 (222)
T 1ryp_M 5 YGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKL 84 (222)
T ss_dssp CCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred cccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 46799999999999999999999999998765 5679999999999999999999999999999999999999999 999
Q ss_pred CHHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCC-cEEEEECCCCceeeecEEEecCChHHHHHHHHhc-------
Q 025676 108 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKL------- 179 (249)
Q Consensus 108 ~~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~g-p~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~------- 179 (249)
+++.+|+++++.++ +++ ++||++++||||+|++| |+||.+||+|++.+++++|+|+++.+++++||+.
T Consensus 85 ~v~~la~~l~~~ly--~~r--~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~ 160 (222)
T 1ryp_M 85 SINSAARNIQHLLY--GKR--FFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQY 160 (222)
T ss_dssp CHHHHHHHHHHHHH--TTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCB
T ss_pred CHHHHHHHHHHHHH--hcC--CCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccccc
Confidence 99999999999984 433 67999999999999754 9999999999999999999999999999999997
Q ss_pred ----------CCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeC
Q 025676 180 ----------KLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDE 219 (249)
Q Consensus 180 ----------~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~ 219 (249)
|+++||++||++++++||..+.+++..++.+++|++|+++
T Consensus 161 ~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~ 210 (222)
T 1ryp_M 161 EPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKD 210 (222)
T ss_dssp CTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETT
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCC
Confidence 8899999999999999999999998778889999999976
No 42
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=2.7e-42 Score=291.71 Aligned_cols=181 Identities=17% Similarity=0.175 Sum_probs=171.8
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCccCC-CCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELA 113 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~~~-~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (249)
+|+|||+++||||||+|+|.++++++.+ +.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6899999999999999999999987764 579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCHHHHHHHH
Q 025676 114 QRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEV 193 (249)
Q Consensus 114 ~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l~ 193 (249)
+++++.++.| .|||++++|+||+|++||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||++++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la 155 (222)
T 1ryp_I 81 QMLKQHLFKY-----QGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLA 155 (222)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHH
T ss_pred HHHHHHHhhc-----CCCCCeeEEEEEEeCCCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHH
Confidence 9999998765 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCceEEEEEEEeCC
Q 025676 194 AKIIYGVHDEAKDKAFELEMSWVCDES 220 (249)
Q Consensus 194 ~~~l~~~~~~~~~~~~~iei~iv~~~~ 220 (249)
++||..+.+++..++..+||++|++++
T Consensus 156 ~~al~~~~~~d~~sg~~i~v~vi~~~g 182 (222)
T 1ryp_I 156 SDAIQAGIWNDLGSGSNVDVCVMEIGK 182 (222)
T ss_dssp HHHHHHHHHHCTTCCSCEEEEEEETTS
T ss_pred HHHHHHHHhccccCCCcEEEEEEECCC
Confidence 999999999876678889999999864
No 43
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=4.4e-43 Score=291.58 Aligned_cols=194 Identities=16% Similarity=0.127 Sum_probs=177.7
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCcc-CCCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELA 113 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (249)
+|+|||+++||||||+|+|.+++.++ .++.+|||+|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999555 45679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceeee-cEEEecCChHHHHHHHHhcCCCCCCHHHHHH
Q 025676 114 QRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRY-FGAAIGKGRQAAKTEIEKLKLSEMTCRQGVI 191 (249)
Q Consensus 114 ~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~~-~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~ 191 (249)
+++++.+|.+ +|||++++||||+|+ +||+||. |+|++.++ +++++|+|+++++++||+.|+++||++||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~ 153 (199)
T 3unf_N 81 NVVKNISYKY-----REDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRR 153 (199)
T ss_dssp HHHHHHHHHT-----TTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHH
Confidence 9999999865 469999999999998 6899999 99997665 5666799999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHH
Q 025676 192 EVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAK 236 (249)
Q Consensus 192 l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~ 236 (249)
++++||..+.+++..++.+++|++|+++ +..++.++++|+++++
T Consensus 154 la~~al~~~~~~d~~sg~~i~v~vi~~~-g~~~~~l~~~ei~~~~ 197 (199)
T 3unf_N 154 FTTNAITLAMNRDGSSGGVIYLVTITAA-GVDHRVILGDELPKFY 197 (199)
T ss_dssp HHHHHHHHHHHHCTTCCSCEEEEEECSS-CEEEEEECGGGSCCCC
T ss_pred HHHHHHHHHHHhccccCCCeEEEEEcCC-CEEEEEcCcccCcccc
Confidence 9999999999998777888999999986 3369999999987654
No 44
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=2e-41 Score=288.44 Aligned_cols=180 Identities=22% Similarity=0.249 Sum_probs=171.0
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCccC-CCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELA 113 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (249)
+|+|||+++||||||+|+|.++++++. ++.+|||+|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 589999999999999999999999876 4679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCHHHHHHHH
Q 025676 114 QRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEV 193 (249)
Q Consensus 114 ~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l~ 193 (249)
+++++.++.| .+||++++|+||+|++||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||++++
T Consensus 81 ~~l~~~l~~~-----~~~~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la 155 (234)
T 1iru_I 81 RMLKQMLFRY-----RGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLV 155 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHH
T ss_pred HHHHHHHHhc-----CCCCceeEEEEEEcCCCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHH
Confidence 9999998766 35999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCceEEEEEEEeC
Q 025676 194 AKIIYGVHDEAKDKAFELEMSWVCDE 219 (249)
Q Consensus 194 ~~~l~~~~~~~~~~~~~iei~iv~~~ 219 (249)
++||..+.+++..++.+++|++|+++
T Consensus 156 ~~al~~a~~~d~~sg~~i~v~vi~k~ 181 (234)
T 1iru_I 156 SEAIAAGIFNDLGSGSNIDLCVISKN 181 (234)
T ss_dssp HHHHHHHHHHCTTCCSCEEEEEEETT
T ss_pred HHHHHHHHHhcccCCCCEEEEEEECC
Confidence 99999999987667788999999875
No 45
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=1.3e-41 Score=283.14 Aligned_cols=183 Identities=16% Similarity=0.206 Sum_probs=168.7
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCcc-CCCCCceEEecCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELA 113 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (249)
+|+|||+++||||||+|+|.+++.++ .++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999997555 46679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccceeeEEEEEeC-CCcEEEEECCCCceeeecEEEecCChHHHHHHHHhcCCCCCCHHHHHHH
Q 025676 114 QRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIE 192 (249)
Q Consensus 114 ~~ls~~~~~~t~~~~~rp~~vs~il~G~d~-~gp~Ly~idp~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai~l 192 (249)
+++++.+. |..+ ..|||++++|+||+|+ +||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||+++
T Consensus 82 ~~~~~~l~-~~~~-~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 159 (201)
T 1iru_K 82 NFTRRNLA-DCLR-SRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVEL 159 (201)
T ss_dssp HHHHHHHH-HHHT-SSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHH-HHHh-cCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHH
Confidence 99987652 1112 2379999999999997 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCceEEEEEEEeC
Q 025676 193 VAKIIYGVHDEAKDKAFELEMSWVCDE 219 (249)
Q Consensus 193 ~~~~l~~~~~~~~~~~~~iei~iv~~~ 219 (249)
+++||..+.+++..++.+++|.+|+++
T Consensus 160 ~~~al~~a~~rd~~sg~~i~v~vi~~~ 186 (201)
T 1iru_K 160 LRKCLEELQKRFILNLPTFSVRIIDKN 186 (201)
T ss_dssp HHHHHHHHHHTBCBCCCCEEEEEEETT
T ss_pred HHHHHHHHHhhccccCCceEEEEEcCC
Confidence 999999999998778888999999986
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=1.8e-35 Score=242.26 Aligned_cols=169 Identities=14% Similarity=0.129 Sum_probs=148.8
Q ss_pred hcCCcEEEEEeCCEEEEEEEccCCCCCc-c-CCCCCceEEe-cCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCC
Q 025676 32 DNSGTVIGIKCKDGIVMGVEKLIASKMM-L-PGSNRRIHSV-HRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIP 108 (249)
Q Consensus 32 ~~G~t~Igi~~~dgVvla~d~~~~~~~~-~-~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 108 (249)
.+|+|+|||+++||||||+|+|.+.+.+ + .++.+||++| ++|++|+++|..+|++.+.++++.+++.|+ |
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g---- 75 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G---- 75 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T----
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C----
Confidence 5799999999999999999999999755 4 4667999999 999999999999999999999999999987 3
Q ss_pred HHHHHHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceee--ecEEEecCChHHHHHHHHhcCCC---C
Q 025676 109 VKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYR--YFGAAIGKGRQAAKTEIEKLKLS---E 183 (249)
Q Consensus 109 ~~~la~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~--~~~~a~G~~~~~~~~~Le~~~~~---~ 183 (249)
.+.+.++++.+.++++..+|||++++|+| +||+||.+||+|++.+ +++.|+|+|+++++++||+.|++ +
T Consensus 76 --~~~~~~~~l~~~~~~~~~~rp~~~~~lva----d~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~ 149 (180)
T 2z3b_A 76 --NLKRAAVELAKEWRSDKVLRKLEAMLIVM----NQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGES 149 (180)
T ss_dssp --CHHHHHHHHHHHHHHCTTGGGCCCCEEEE----CSSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGG
T ss_pred --ChHHHHHHHHHHHHhhhCcCcceEEEEEE----cCCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCC
Confidence 23334444455566777889999999998 4799999999999998 49999999999999999999998 9
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCCceEEEEEE
Q 025676 184 MTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWV 216 (249)
Q Consensus 184 ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv 216 (249)
||.+| ++.+||..+.+++..++..++|.+|
T Consensus 150 mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 150 MSASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp CCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred CCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 99999 4779999999998888888888776
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=8.3e-35 Score=236.29 Aligned_cols=165 Identities=16% Similarity=0.167 Sum_probs=143.1
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCcc-CCCCCceEEe-cCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMML-PGSNRRIHSV-HRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKEL 112 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~-~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 112 (249)
+|+|||+++||||||+|+|.+.+.++ .++.+|||+| ++|++|+++|..+|++.+.++++.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 68999999999999999999987555 4567999999 99999999999999999999999999998744 14444
Q ss_pred HHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeec--EEEecCChHHHHHHHHhcCC-CCCCHHHH
Q 025676 113 AQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYF--GAAIGKGRQAAKTEIEKLKL-SEMTCRQG 189 (249)
Q Consensus 113 a~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~--~~a~G~~~~~~~~~Le~~~~-~~ls~~ea 189 (249)
++. .+.++++...|||++++|++ | ||+||.+||+|++.+++ +.|+|+|+++++++||+.|+ ++||.
T Consensus 76 ~~l----~~~~~~~~~~~~~~~~~lv~--D--~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~--- 144 (171)
T 1m4y_A 76 VEL----AKDWRTDRVLRRLEALLLVA--D--KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA--- 144 (171)
T ss_dssp HHH----HHHHHHCTTGGGCCCEEEEE--C--SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---
T ss_pred HHH----HHHHHHhCCCCceEEEEEEE--c--CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH---
Confidence 444 33455555678999999888 5 89999999999999988 99999999999999999999 99997
Q ss_pred HHHHHHHHHHhhhccCCCCceEEEEE
Q 025676 190 VIEVAKIIYGVHDEAKDKAFELEMSW 215 (249)
Q Consensus 190 i~l~~~~l~~~~~~~~~~~~~iei~i 215 (249)
++++++||+.+.+++..++..++|.+
T Consensus 145 ~~l~~~al~~a~~rd~~sg~~i~v~~ 170 (171)
T 1m4y_A 145 REIVEKAMTIAGEICIYTNQNIVIEE 170 (171)
T ss_dssp HHHHHHHHHHHHHHCTTCCSCCEEEE
T ss_pred HHHHHHHHHHHHHhCcccCCeEEEEE
Confidence 67899999999999877777787754
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=9.5e-35 Score=236.63 Aligned_cols=167 Identities=15% Similarity=0.101 Sum_probs=145.3
Q ss_pred CcEEEEEeCCEEEEEEEccCCCCCcc-CCCCCceEEe-cCcEEEEEecChhHHHHHHHHHHHHHHHhHHHhCCCCCHHHH
Q 025676 35 GTVIGIKCKDGIVMGVEKLIASKMML-PGSNRRIHSV-HRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKEL 112 (249)
Q Consensus 35 ~t~Igi~~~dgVvla~d~~~~~~~~~-~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 112 (249)
+|+|||+++||||||+|+|.+.+.++ .++.+||++| ++|++|+++|..+|++.+.++++.+++.|+. ++
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~--- 71 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HL--- 71 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CH---
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cH---
Confidence 58999999999999999999998555 4567999999 9999999999999999999999999999874 33
Q ss_pred HHHHHHHHHHhcccccccccceeeEEEEEeCCCcEEEEECCCCceeeec---EEEecCChHHHHHHHHhcCC-CCCCHHH
Q 025676 113 AQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYF---GAAIGKGRQAAKTEIEKLKL-SEMTCRQ 188 (249)
Q Consensus 113 a~~ls~~~~~~t~~~~~rp~~vs~il~G~d~~gp~Ly~idp~G~~~~~~---~~a~G~~~~~~~~~Le~~~~-~~ls~~e 188 (249)
.+.++.+.+.++++..+||++ ++++|+| ||+||++||+|++.+++ +.|+|+|+++++++||+.|+ ++||.+
T Consensus 72 ~~~~~~l~~~~~~~~~~r~~~--~~l~g~d--~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~- 146 (174)
T 1g3k_A 72 LKSAVELAKDWRTDRALRKLE--AMLIVAD--EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAH- 146 (174)
T ss_dssp HHHHHHHHHHHHHSTTGGGCC--CEEEEEC--SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH-
T ss_pred HHHHHHHHHHHHhccCcCcce--EEEEEEC--CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH-
Confidence 444444455566666778864 6777887 89999999999999988 99999999999999999999 999955
Q ss_pred HHHHHHHHHHHhhhccCCCCceEEEEEEE
Q 025676 189 GVIEVAKIIYGVHDEAKDKAFELEMSWVC 217 (249)
Q Consensus 189 ai~l~~~~l~~~~~~~~~~~~~iei~iv~ 217 (249)
+++++||+.+.+++..++..++|.+|+
T Consensus 147 --~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 147 --EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp --HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred --HHHHHHHHHHHHhccccCCceEEEEec
Confidence 799999999999987778889998874
No 49
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=56.64 E-value=39 Score=23.35 Aligned_cols=59 Identities=15% Similarity=0.047 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHHHhhhh
Q 025676 180 KLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALEE 245 (249)
Q Consensus 180 ~~~~ls~~eai~l~~~~l~~~~~~~~~~~~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~~~~~~ 245 (249)
..++++.++..+.+...++.. .+.++.+.|++.+ +-+..+.+++|++++++-.+.+-++
T Consensus 22 v~~~i~~~~L~~kv~~~~~~~------~~~~f~lky~DEe-GD~itisSd~EL~eAl~l~~~n~~~ 80 (89)
T 1vd2_A 22 FEPSISFEGLCNEVRDMCSFD------NEQLFTMKWIDEE-GDPCTVSSQLELEEAFRLYELNKDS 80 (89)
T ss_dssp ECTTCCHHHHHHHHHHHTTCC------SSCCEEEEECCSS-SCCEECCSHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCHHHHHHHHHHHhCCC------CCCeEEEEEECCC-CCcccccCHHHHHHHHHHHHccCCC
Confidence 356788888887766644421 2345788998876 4579999999999999977766543
No 50
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=45.56 E-value=42 Score=24.41 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=26.7
Q ss_pred ceEEEEEEEeCCCCcEEeCCHHHHHHHHHHHHH
Q 025676 209 FELEMSWVCDESNRQHQKVPDELLEEAKAAARA 241 (249)
Q Consensus 209 ~~iei~iv~~~~~~~~~~~~~~ei~~~~~~~~~ 241 (249)
..+-|.+++++++...|.+|.|++-.++++..+
T Consensus 67 ~~~vVkVvD~~TgEVIRqIPpEe~L~l~~~l~e 99 (117)
T 2hc5_A 67 NEYYVKVIEDSTNEVIREIPPKRWLDFYAAMTE 99 (117)
T ss_dssp TEEEEEEEETTTTEEEEEECHHHHHHHHHHHHH
T ss_pred CcEEEEEEECCCCcEEEeCChHHHHHHHHHHHH
Confidence 345678899998888999999999888877664
No 51
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=40.12 E-value=16 Score=28.47 Aligned_cols=31 Identities=19% Similarity=0.056 Sum_probs=27.6
Q ss_pred CcccCCCCcch-hhhhHHHhhhcCCcEEEEEe
Q 025676 12 VTTFSPDGRVF-QIEYAAKAVDNSGTVIGIKC 42 (249)
Q Consensus 12 ~t~fspeGrl~-Q~eya~~a~~~G~t~Igi~~ 42 (249)
+-+||+.|+-- -+|-|+++-.+|-++|+|..
T Consensus 81 vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 81 VLIFTPDTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp EEEEESCSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 34699999976 88999999999999999987
No 52
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=34.76 E-value=27 Score=28.35 Aligned_cols=30 Identities=10% Similarity=-0.027 Sum_probs=26.5
Q ss_pred cccCCCCcchhhhhHHHhhhcCCcEEEEEe
Q 025676 13 TTFSPDGRVFQIEYAAKAVDNSGTVIGIKC 42 (249)
Q Consensus 13 t~fspeGrl~Q~eya~~a~~~G~t~Igi~~ 42 (249)
|.||++|....-|++..|...|-+.||+.-
T Consensus 8 t~~S~DG~~~~ee~v~~A~~~Gl~~iaiTD 37 (267)
T 2yxo_A 8 TPLCGHAEGHPEAYLEEARAKGLKGVVFTD 37 (267)
T ss_dssp CGGGSSCCSCHHHHHHHHHHTTCSEEEEEE
T ss_pred cCCCCCCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 569999998888999999999999999873
No 53
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=28.65 E-value=12 Score=32.16 Aligned_cols=45 Identities=11% Similarity=0.266 Sum_probs=28.8
Q ss_pred cEEEEECCCCceee-ecEEEecCChHHHHHHHHhcCCCCCCHHHHH
Q 025676 146 PQLYMIEPSGISYR-YFGAAIGKGRQAAKTEIEKLKLSEMTCRQGV 190 (249)
Q Consensus 146 p~Ly~idp~G~~~~-~~~~a~G~~~~~~~~~Le~~~~~~ls~~eai 190 (249)
|..|.||+.|.+.. |...-.+.....+...|++.-..+|++.+++
T Consensus 103 r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~~~~~~~~~~I 148 (322)
T 4eo3_A 103 RSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDLSLNKHI 148 (322)
T ss_dssp CEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHHHHHTSCCHHH
T ss_pred cEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhchhhhHHHHHH
Confidence 78899999999865 4444455556666666665533444444444
Done!