Your job contains 1 sequence.
>025677
MHAYSHIPFGEGISLTSLIFNTEDLPPSEVLSRHDMHNYLSQDDDLGELQPLKDTSTIGS
AYDRYLQSAQYSSFTSGEASAFSGDRLRRAVPGGVTRLPVSDPSVTGRHGATGPDLVQNL
RSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVR
LVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSRNPGPR
SVFGARGRR
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025677
(249 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2014937 - symbol:AT1G21320 species:3702 "Arabi... 591 1.7e-57 1
TAIR|locus:2025232 - symbol:AT1G76940 species:3702 "Arabi... 486 2.3e-46 1
UNIPROTKB|F1NZ89 - symbol:RBPMS2 "Uncharacterized protein... 132 1.6e-08 1
DICTYBASE|DDB_G0268988 - symbol:DDB_G0268988 "RNA-binding... 150 1.9e-08 1
UNIPROTKB|Q9YGP5 - symbol:rbpms "RNA-binding protein with... 136 6.0e-08 1
RGD|1561222 - symbol:Rbpms2 "RNA binding protein with mul... 130 1.1e-07 1
UNIPROTKB|F5H357 - symbol:RBPMS "RNA-binding protein with... 124 1.3e-07 1
RGD|1561067 - symbol:Rbpms "RNA binding protein with mult... 124 1.3e-07 1
SGD|S000005141 - symbol:WHI3 "RNA binding protein that se... 146 2.4e-07 2
UNIPROTKB|F1P2M9 - symbol:RBPMS2 "Uncharacterized protein... 132 3.0e-07 1
UNIPROTKB|Q9W6I1 - symbol:RBPMS "RNA-binding protein with... 132 3.3e-07 1
UNIPROTKB|F1N2U8 - symbol:RBPMS2 "Uncharacterized protein... 132 3.8e-07 1
UNIPROTKB|H0YBU9 - symbol:RBPMS "RNA-binding protein with... 119 4.7e-07 1
UNIPROTKB|F1S0B2 - symbol:RBPMS2 "Uncharacterized protein... 130 4.8e-07 1
MGI|MGI:1919223 - symbol:Rbpms2 "RNA binding protein with... 131 5.8e-07 1
UNIPROTKB|F1M7J8 - symbol:Rbpms "Protein Rbpms" species:1... 124 7.7e-07 1
UNIPROTKB|Q6ZRY4 - symbol:RBPMS2 "RNA-binding protein wit... 130 8.5e-07 1
ZFIN|ZDB-GENE-040426-741 - symbol:rbpms2b "RNA binding pr... 129 8.8e-07 1
UNIPROTKB|E2QU21 - symbol:RBPMS2 "Uncharacterized protein... 130 9.9e-07 1
ZFIN|ZDB-GENE-040718-106 - symbol:rbpms2a "RNA binding pr... 128 1.1e-06 1
UNIPROTKB|F1NAP9 - symbol:RBPMS "RNA-binding protein with... 127 1.3e-06 1
UNIPROTKB|Q93062 - symbol:RBPMS "RNA-binding protein with... 124 3.5e-06 1
MGI|MGI:1334446 - symbol:Rbpms "RNA binding protein gene ... 124 3.6e-06 1
UNIPROTKB|F1M9Y9 - symbol:Rbpms "Protein Rbpms" species:1... 124 3.7e-06 1
UNIPROTKB|G5EH29 - symbol:MGCH7_ch7g848 "RNA binding prot... 134 4.1e-06 1
POMBASE|SPCC16C4.07 - symbol:scw1 "RNA-binding protein Sc... 133 4.6e-06 1
UNIPROTKB|F1RX64 - symbol:RBPMS "Uncharacterized protein"... 124 5.9e-06 1
UNIPROTKB|F1MAV3 - symbol:RBPMS "Uncharacterized protein"... 124 6.4e-06 1
UNIPROTKB|E2R5F7 - symbol:RBPMS "Uncharacterized protein"... 124 6.4e-06 1
UNIPROTKB|B4E3T4 - symbol:RBPMS "HCG2043421, isoform CRA_... 124 7.1e-06 1
ASPGD|ASPL0000063387 - symbol:AN7700 species:162425 "Emer... 131 9.3e-06 1
FB|FBgn0263995 - symbol:cpo "couch potato" species:7227 "... 122 0.00012 1
TAIR|locus:2061976 - symbol:U1A "spliceosomal protein U1A... 115 0.00013 1
UNIPROTKB|B8AM21 - symbol:OsI_11177 "U2 small nuclear rib... 112 0.00023 1
UNIPROTKB|Q10MR0 - symbol:LOC_Os03g18720 "U2 small nuclea... 112 0.00023 1
TAIR|locus:2065742 - symbol:U2B'' "U2 small nuclear ribon... 109 0.00053 1
SGD|S000002383 - symbol:WHI4 "Putative RNA binding protei... 114 0.00085 1
>TAIR|locus:2014937 [details] [associations]
symbol:AT1G21320 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0017069 InterPro:IPR008889 Pfam:PF05678
PANTHER:PTHR10501 IPI:IPI00517769 RefSeq:NP_173554.3
UniGene:At.64837 ProteinModelPortal:F4HWF9 SMR:F4HWF9 PRIDE:F4HWF9
EnsemblPlants:AT1G21320.1 GeneID:838729 KEGG:ath:AT1G21320
OMA:QNRGFER ArrayExpress:F4HWF9 Uniprot:F4HWF9
Length = 421
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 126/216 (58%), Positives = 148/216 (68%)
Query: 35 DMHNYLSQDDDLGELQPLKDTSTIGSAYDRYLQSAQYSSFTSGEASAFSGDRLRRAVPGG 94
DMH+YLSQD+D G +KDT +IGSAYDRYLQS Q S EA F+G + R GG
Sbjct: 211 DMHSYLSQDEDRGIPHSVKDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQ--GG 268
Query: 95 VTRLPVSDPSVTGRHGATGPDLVQNLRSSSIDDQL-PFDAAARPGHETLPLPPDASSTLY 153
+P PS+ G L + R + D D+ RPG E PLPPD S+TLY
Sbjct: 269 SNMMP--GPSMGELMAGCGGSLPSDFRPNGRDMGFGQLDSVGRPGREPHPLPPDVSNTLY 326
Query: 154 VEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSA 213
VEGLP++ ++REV+HIFRPFVGY+EVRLV ++SK R GDP +LCFVDFEN ACAATALSA
Sbjct: 327 VEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSA 386
Query: 214 LQGYRMDEDDPDSKFLRLQFSRNPGPRSVFGARGRR 249
LQ YRMDED+PDSK LRLQF RNPGPR G RG R
Sbjct: 387 LQDYRMDEDEPDSKILRLQFFRNPGPRP--GQRGGR 420
>TAIR|locus:2025232 [details] [associations]
symbol:AT1G76940 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0017069 PANTHER:PTHR10501
EMBL:BT029526 IPI:IPI00547369 RefSeq:NP_177820.2 UniGene:At.45990
ProteinModelPortal:A1A6K6 SMR:A1A6K6 PaxDb:A1A6K6 PRIDE:A1A6K6
EnsemblPlants:AT1G76940.1 GeneID:844029 KEGG:ath:AT1G76940
TAIR:At1g76940 eggNOG:NOG274612 HOGENOM:HOG000116598
InParanoid:A1A6K6 OMA:DPIVLCF PhylomeDB:A1A6K6
ProtClustDB:CLSN2680654 Genevestigator:A1A6K6 Uniprot:A1A6K6
Length = 233
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 112/196 (57%), Positives = 127/196 (64%)
Query: 54 DTSTIGSAYDRYLQSAQYSSFTSGEASAFSGDRLRRAVPGGVTRLPVSDPSVTGRHGATG 113
DT TIGSAYDRYLQS Q SGE + S R GG + D + R G
Sbjct: 53 DTRTIGSAYDRYLQSVQ-----SGEGGSVSMGRSGGGGGGGGGNVQTIDDFMLRRGGVLP 107
Query: 114 PDLVQNLRSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPF 173
D N + D P G LP DAS+TLYVEGLP++ ++REVAHIFRPF
Sbjct: 108 LDHGPNGHTIGFDPPEPV------GRRNLP--SDASNTLYVEGLPSNCSRREVAHIFRPF 159
Query: 174 VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQF 233
VGY+EVRLV K+SK R GDP++LCFVDF NPACAATALSALQGYRMDE++ DSKFLRLQF
Sbjct: 160 VGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQF 219
Query: 234 SRNPGPRSVFGARGRR 249
SR PG R G RGRR
Sbjct: 220 SRKPGSRP--GQRGRR 233
>UNIPROTKB|F1NZ89 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 EMBL:AADN02051088 IPI:IPI00819063
Ensembl:ENSGALT00000003715 Uniprot:F1NZ89
Length = 180
Score = 132 (51.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 36/85 (42%), Positives = 50/85 (58%)
Query: 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 210
TL+V GLP D RE+ +FRPF GY E L+ KL P+ FV F++ A A A
Sbjct: 3 TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLI----KLTSKQPV--GFVTFDSRAGAEAA 55
Query: 211 LSALQGYRMDEDDPDSKFLRLQFSR 235
+AL G R D ++P + LRL+F++
Sbjct: 56 KNALNGIRFDPENPQT--LRLEFAK 78
>DICTYBASE|DDB_G0268988 [details] [associations]
symbol:DDB_G0268988 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0268988 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000004 eggNOG:NOG255497 RefSeq:XP_646953.2
ProteinModelPortal:Q55ER7 EnsemblProtists:DDB0233676 GeneID:8616643
KEGG:ddi:DDB_G0268988 OMA:EFATMAM Uniprot:Q55ER7
Length = 356
Score = 150 (57.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 60/198 (30%), Positives = 94/198 (47%)
Query: 51 PLKDTSTIGSAY--DRY-LQSAQY---SSFTSGEASAFSG-DRLR---RAVPGGVTR--- 97
PL +S + S Y DR ++S Y SS +S +S +S DR R+ P +
Sbjct: 167 PLS-SSPLPSHYYQDRKRIRSEDYYPRSSSSSSSSSLYSSSDRYHDSYRSTPSSSSSSYL 225
Query: 98 LPVSDPSVTGRHGATGPDLVQNLRSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGL 157
+P S ++ + P S+S+ +A P ++ STL+V L
Sbjct: 226 IPTSSIPLSSSNYHLPPS------STSLSSSHYHGGSALPPQSSISTTGMPCSTLFVSNL 279
Query: 158 PADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 217
P D T+RE++ +FR G+ +RL+ KE KL P+ CF DF + + AL LQG+
Sbjct: 280 PKDVTERELSILFRFMRGFVGIRLINKEGKL----PM--CFCDFIDTQSSMFALEFLQGF 333
Query: 218 RMDEDDPDSKFLRLQFSR 235
RMD D S + ++F +
Sbjct: 334 RMDASDISSS-ISIEFDK 350
>UNIPROTKB|Q9YGP5 [details] [associations]
symbol:rbpms "RNA-binding protein with multiple splicing"
species:8355 "Xenopus laevis" [GO:0003713 "transcription
coactivator activity" evidence=ISS] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=ISS]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003713 GO:GO:0010862 GO:GO:0060391
GO:GO:0008143 HOVERGEN:HBG069897 CTD:11030 EMBL:AF107889
EMBL:BC097507 RefSeq:NP_001081864.1 UniGene:Xl.449
ProteinModelPortal:Q9YGP5 GeneID:398092 KEGG:xla:398092
Uniprot:Q9YGP5
Length = 196
Score = 136 (52.9 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 37/85 (43%), Positives = 50/85 (58%)
Query: 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 210
TL+V GLP D RE+ +FRPF GY E L+ KL P+ FV F+N A A A
Sbjct: 21 TLFVSGLPIDIKPRELYLLFRPFKGY-EGSLI----KLTSKQPV--GFVTFDNRAGAEAA 73
Query: 211 LSALQGYRMDEDDPDSKFLRLQFSR 235
+AL G R D ++P + LRL+F++
Sbjct: 74 KNALNGIRFDPENPQT--LRLEFAK 96
>RGD|1561222 [details] [associations]
symbol:Rbpms2 "RNA binding protein with multiple splicing 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1561222 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:KLTSRQP GeneTree:ENSGT00500000044861
IPI:IPI00766399 Ensembl:ENSRNOT00000021337 UCSC:RGD:1561222
ArrayExpress:F1M9N3 Uniprot:F1M9N3
Length = 181
Score = 130 (50.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 36/85 (42%), Positives = 50/85 (58%)
Query: 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 210
TL+V GLP D RE+ +FRPF GY E L+ KL P+ FV F++ A A A
Sbjct: 3 TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLI----KLTSRQPV--GFVIFDSRAGAEAA 55
Query: 211 LSALQGYRMDEDDPDSKFLRLQFSR 235
+AL G R D ++P + LRL+F++
Sbjct: 56 KNALNGIRFDPENPQT--LRLEFAK 78
>UNIPROTKB|F5H357 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00414709 HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945
EMBL:AC011204 EMBL:AC109329 ProteinModelPortal:F5H357 SMR:F5H357
PRIDE:F5H357 Ensembl:ENST00000538486 ArrayExpress:F5H357
Bgee:F5H357 Uniprot:F5H357
Length = 153
Score = 124 (48.7 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 210
TL+V GLP D RE+ +FRPF GY E L+ KL P+ FV F++ + A A
Sbjct: 25 TLFVSGLPLDIKPRELYLLFRPFKGY-EGSLI----KLTSKQPV--GFVSFDSRSEAEAA 77
Query: 211 LSALQGYRMDEDDPDSKFLRLQFSR 235
+AL G R D + P + LRL+F++
Sbjct: 78 KNALNGIRFDPEIPQT--LRLEFAK 100
>RGD|1561067 [details] [associations]
symbol:Rbpms "RNA binding protein with multiple splicing"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA;ISO] [GO:0008143 "poly(A) RNA binding"
evidence=IEA;ISO] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA;ISO]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561067
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 IPI:IPI00959368
Ensembl:ENSRNOT00000068011 Uniprot:F2Z3S5
Length = 110
Score = 124 (48.7 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 210
TL+V GLP D RE+ +FRPF GY E L+ KL P+ FV F++ + A A
Sbjct: 3 TLFVSGLPLDIKPRELYLLFRPFKGY-EGSLI----KLTSKQPV--GFVSFDSRSEAEAA 55
Query: 211 LSALQGYRMDEDDPDSKFLRLQFSR 235
+AL G R D + P + LRL+F++
Sbjct: 56 KNALNGIRFDPEIPQT--LRLEFAK 78
>SGD|S000005141 [details] [associations]
symbol:WHI3 "RNA binding protein that sequesters CLN3 mRNA in
cytoplasmic foci" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;ISS;IMP;IDA] [GO:0008361
"regulation of cell size" evidence=IGI;IMP] [GO:0007124
"pseudohyphal growth" evidence=IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0001403 "invasive growth in response to glucose
limitation" evidence=IMP] [GO:0051220 "cytoplasmic sequestering of
protein" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005141
GO:GO:0005737 GO:GO:0051220 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BK006947 GO:GO:0008361 GO:GO:0003723 GO:GO:0007049
GO:GO:0001403 GO:GO:0007124 EMBL:X78898 OrthoDB:EOG42592X
eggNOG:NOG255497 EMBL:U01095 EMBL:Z71473 PIR:S50734
RefSeq:NP_014202.1 ProteinModelPortal:P34761 SMR:P34761
IntAct:P34761 MINT:MINT-4500279 STRING:P34761 PaxDb:P34761
PeptideAtlas:P34761 EnsemblFungi:YNL197C GeneID:855524
KEGG:sce:YNL197C CYGD:YNL197c GeneTree:ENSGT00530000067542
HOGENOM:HOG000074699 OMA:QRSRFSF NextBio:979559
Genevestigator:P34761 GermOnline:YNL197C Uniprot:P34761
Length = 661
Score = 146 (56.5 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 44/140 (31%), Positives = 68/140 (48%)
Query: 116 LVQNLRSSSIDDQLPFDAAAR---PGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRP 172
L N+ S+ Q AR P + PP +TLYV LP+D+T++E+ +F
Sbjct: 503 LSSNITGSASISQADLSLLARIPPPANPADQNPP--CNTLYVGNLPSDATEQELRQLFSG 560
Query: 173 FVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF-LRL 231
G++ + K + G +CFV+F++ + A AL+ L G ++ SK +RL
Sbjct: 561 QEGFRRLSFRNKNTTSNGHSHGPMCFVEFDDVSFATRALAELYGRQLPRSTVSSKGGIRL 620
Query: 232 QFSRNP----GPRSVFGARG 247
FS+NP GP S G G
Sbjct: 621 SFSKNPLGVRGPNSRRGGSG 640
Score = 37 (18.1 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 1 MHAYSHIPFGE-GISLTSLIFNTEDLPPSEVLSRHDMH--NYLSQDD 44
+ A S P + G ++ + + ++ LPP ++S H N ++ D
Sbjct: 405 LSASSQQPMMQIGNTINTSLTSSNSLPPYGLMSSQSQHISNMVNTSD 451
>UNIPROTKB|F1P2M9 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00591826
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:AADN02051088
Ensembl:ENSGALT00000040332 Uniprot:F1P2M9
Length = 198
Score = 132 (51.5 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 36/85 (42%), Positives = 50/85 (58%)
Query: 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 210
TL+V GLP D RE+ +FRPF GY E L+ KL P+ FV F++ A A A
Sbjct: 21 TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLI----KLTSKQPV--GFVTFDSRAGAEAA 73
Query: 211 LSALQGYRMDEDDPDSKFLRLQFSR 235
+AL G R D ++P + LRL+F++
Sbjct: 74 KNALNGIRFDPENPQT--LRLEFAK 96
>UNIPROTKB|Q9W6I1 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple splicing"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=ISS] [GO:0010862 "positive
regulation of pathway-restricted SMAD protein phosphorylation"
evidence=ISS] [GO:0060391 "positive regulation of SMAD protein
import into nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003713 GO:GO:0010862 GO:GO:0060391
eggNOG:NOG255204 GO:GO:0008143 EMBL:AF129933 IPI:IPI00591826
RefSeq:NP_990200.1 UniGene:Gga.2695 ProteinModelPortal:Q9W6I1
GeneID:395678 KEGG:gga:395678 CTD:348093 HOGENOM:HOG000017369
HOVERGEN:HBG069897 InParanoid:Q9W6I1 OrthoDB:EOG42RD8G
NextBio:20815750 Uniprot:Q9W6I1
Length = 200
Score = 132 (51.5 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 36/85 (42%), Positives = 50/85 (58%)
Query: 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 210
TL+V GLP D RE+ +FRPF GY E L+ KL P+ FV F++ A A A
Sbjct: 23 TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLI----KLTSKQPV--GFVTFDSRAGAEAA 75
Query: 211 LSALQGYRMDEDDPDSKFLRLQFSR 235
+AL G R D ++P + LRL+F++
Sbjct: 76 KNALNGIRFDPENPQT--LRLEFAK 98
>UNIPROTKB|F1N2U8 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:KLTSRQP
GeneTree:ENSGT00500000044861 EMBL:DAAA02028733 IPI:IPI00688079
Ensembl:ENSBTAT00000014659 Uniprot:F1N2U8
Length = 203
Score = 132 (51.5 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 39/96 (40%), Positives = 54/96 (56%)
Query: 140 ETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFV 199
ET P + TL+V GLP D RE+ +FRPF GY E L+ KL P+ FV
Sbjct: 16 ETSPTIQEVR-TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLI----KLTSRQPV--GFV 67
Query: 200 DFENPACAATALSALQGYRMDEDDPDSKFLRLQFSR 235
F++ A A A +AL G R D ++P + LRL+F++
Sbjct: 68 IFDSRAGAEAAKNALNGIRFDPENPQT--LRLEFAK 101
>UNIPROTKB|H0YBU9 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945 EMBL:AC011204
EMBL:AC109329 Ensembl:ENST00000519359 Uniprot:H0YBU9
Length = 119
Score = 119 (46.9 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 34/84 (40%), Positives = 48/84 (57%)
Query: 152 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 211
L+V GLP D RE+ +FRPF GY E L+ KL P+ FV F++ + A A
Sbjct: 2 LFVSGLPLDIKPRELYLLFRPFKGY-EGSLI----KLTSKQPV--GFVSFDSRSEAEAAK 54
Query: 212 SALQGYRMDEDDPDSKFLRLQFSR 235
+AL G R D + P + LRL+F++
Sbjct: 55 NALNGIRFDPEIPQT--LRLEFAK 76
>UNIPROTKB|F1S0B2 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:KLTSRQP
GeneTree:ENSGT00500000044861 EMBL:CU633631
Ensembl:ENSSSCT00000005024 Uniprot:F1S0B2
Length = 195
Score = 130 (50.8 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 36/85 (42%), Positives = 50/85 (58%)
Query: 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 210
TL+V GLP D RE+ +FRPF GY E L+ KL P+ FV F++ A A A
Sbjct: 17 TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLI----KLTSRQPV--GFVIFDSRAGAEAA 69
Query: 211 LSALQGYRMDEDDPDSKFLRLQFSR 235
+AL G R D ++P + LRL+F++
Sbjct: 70 KNALNGIRFDPENPQT--LRLEFAK 92
>MGI|MGI:1919223 [details] [associations]
symbol:Rbpms2 "RNA binding protein with multiple splicing 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1919223 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG255204 CTD:348093
HOGENOM:HOG000017369 HOVERGEN:HBG069897 OrthoDB:EOG42RD8G
HSSP:P09012 OMA:KLTSRQP EMBL:AK144659 EMBL:AK156633 EMBL:BC021788
IPI:IPI00121434 RefSeq:NP_082306.2 UniGene:Mm.29148
ProteinModelPortal:Q8VC52 SMR:Q8VC52 PhosphoSite:Q8VC52
PaxDb:Q8VC52 PRIDE:Q8VC52 DNASU:71973 Ensembl:ENSMUST00000055844
GeneID:71973 KEGG:mmu:71973 UCSC:uc009qdt.1
GeneTree:ENSGT00500000044861 InParanoid:Q8VC52 NextBio:335098
Bgee:Q8VC52 CleanEx:MM_RBPMS2 Genevestigator:Q8VC52 Uniprot:Q8VC52
Length = 206
Score = 131 (51.2 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 38/93 (40%), Positives = 53/93 (56%)
Query: 143 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFE 202
PL + TL+V GLP D RE+ +FRPF GY E L+ KL P+ FV F+
Sbjct: 19 PLEEEVR-TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLI----KLTSRQPV--GFVIFD 70
Query: 203 NPACAATALSALQGYRMDEDDPDSKFLRLQFSR 235
+ A A A +AL G R D ++P + LRL+F++
Sbjct: 71 SRAGAEAAKNALNGIRFDPENPQT--LRLEFAK 101
>UNIPROTKB|F1M7J8 [details] [associations]
symbol:Rbpms "Protein Rbpms" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1561067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 IPI:IPI00767399
Ensembl:ENSRNOT00000046138 ArrayExpress:F1M7J8 Uniprot:F1M7J8
Length = 175
Score = 124 (48.7 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 210
TL+V GLP D RE+ +FRPF GY E L+ KL P+ FV F++ + A A
Sbjct: 3 TLFVSGLPLDIKPRELYLLFRPFKGY-EGSLI----KLTSKQPV--GFVSFDSRSEAEAA 55
Query: 211 LSALQGYRMDEDDPDSKFLRLQFSR 235
+AL G R D + P + LRL+F++
Sbjct: 56 KNALNGIRFDPEIPQT--LRLEFAK 78
>UNIPROTKB|Q6ZRY4 [details] [associations]
symbol:RBPMS2 "RNA-binding protein with multiple splicing
2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:NOG255204 CTD:348093 HOGENOM:HOG000017369 HOVERGEN:HBG069897
OrthoDB:EOG42RD8G EMBL:AY369207 EMBL:AK127873 IPI:IPI00238688
RefSeq:NP_919248.1 UniGene:Hs.436518 HSSP:P09012
ProteinModelPortal:Q6ZRY4 SMR:Q6ZRY4 STRING:Q6ZRY4
PhosphoSite:Q6ZRY4 DMDM:74762401 PaxDb:Q6ZRY4 PRIDE:Q6ZRY4
DNASU:348093 Ensembl:ENST00000300069 GeneID:348093 KEGG:hsa:348093
UCSC:uc002anq.3 GeneCards:GC15M065032 HGNC:HGNC:19098
neXtProt:NX_Q6ZRY4 PharmGKB:PA134871904 InParanoid:Q6ZRY4
OMA:KLTSRQP PhylomeDB:Q6ZRY4 ChiTaRS:RBPMS2 GenomeRNAi:348093
NextBio:99336 ArrayExpress:Q6ZRY4 Bgee:Q6ZRY4 CleanEx:HS_RBPMS2
Genevestigator:Q6ZRY4 Uniprot:Q6ZRY4
Length = 209
Score = 130 (50.8 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 36/85 (42%), Positives = 50/85 (58%)
Query: 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 210
TL+V GLP D RE+ +FRPF GY E L+ KL P+ FV F++ A A A
Sbjct: 32 TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLI----KLTARQPV--GFVIFDSRAGAEAA 84
Query: 211 LSALQGYRMDEDDPDSKFLRLQFSR 235
+AL G R D ++P + LRL+F++
Sbjct: 85 KNALNGIRFDPENPQT--LRLEFAK 107
>ZFIN|ZDB-GENE-040426-741 [details] [associations]
symbol:rbpms2b "RNA binding protein with multiple
splicing 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-741 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG255204
HOGENOM:HOG000017369 HOVERGEN:HBG069897 OrthoDB:EOG42RD8G
GeneTree:ENSGT00500000044861 EMBL:BX663612 EMBL:CR354581
EMBL:BC048876 EMBL:BC066414 EMBL:AB080736 IPI:IPI00498043
RefSeq:NP_956553.1 UniGene:Dr.81683 STRING:Q7ZUL7
Ensembl:ENSDART00000006619 GeneID:393229 KEGG:dre:393229 CTD:393229
OMA:TDIKPRE NextBio:20814293 Uniprot:Q7ZUL7
Length = 200
Score = 129 (50.5 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 35/85 (41%), Positives = 50/85 (58%)
Query: 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 210
TL+V GLP D RE+ +FRPF GY E L+ KL P+ FV F++ + A A
Sbjct: 21 TLFVSGLPTDIKPRELYLLFRPFKGY-EGSLI----KLTSKQPV--GFVTFDSRSGAEAA 73
Query: 211 LSALQGYRMDEDDPDSKFLRLQFSR 235
+AL G R D ++P + LRL+F++
Sbjct: 74 KNALNGVRFDPENPQT--LRLEFAK 96
>UNIPROTKB|E2QU21 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:348093
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:AAEX03016208
RefSeq:XP_853385.2 Ensembl:ENSCAFT00000027080 GeneID:610746
KEGG:cfa:610746 NextBio:20896295 Uniprot:E2QU21
Length = 214
Score = 130 (50.8 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 36/85 (42%), Positives = 50/85 (58%)
Query: 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 210
TL+V GLP D RE+ +FRPF GY E L+ KL P+ FV F++ A A A
Sbjct: 36 TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLI----KLTSRQPV--GFVIFDSRAGAEAA 88
Query: 211 LSALQGYRMDEDDPDSKFLRLQFSR 235
+AL G R D ++P + LRL+F++
Sbjct: 89 KNALNGIRFDPENPQT--LRLEFAK 111
>ZFIN|ZDB-GENE-040718-106 [details] [associations]
symbol:rbpms2a "RNA binding protein with multiple
splicing 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040718-106 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG255204
HOGENOM:HOG000017369 HOVERGEN:HBG069897 OrthoDB:EOG42RD8G
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:BX296538
EMBL:CU570688 EMBL:BC076171 EMBL:BC152178 IPI:IPI00486507
RefSeq:NP_001002409.1 UniGene:Dr.82744 STRING:Q6DH13
Ensembl:ENSDART00000067514 GeneID:436682 KEGG:dre:436682 CTD:436682
InParanoid:Q6DH13 NextBio:20831125 Uniprot:Q6DH13
Length = 199
Score = 128 (50.1 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 210
TL+V GLP D RE+ +FRPF GY E L+ KL P+ FV F++ + A A
Sbjct: 21 TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLI----KLTSKQPV--GFVTFDSRSGAEAA 73
Query: 211 LSALQGYRMDEDDPDSKFLRLQFSR 235
+AL G R D + P + LRL+F++
Sbjct: 74 KNALNGIRFDPESPQT--LRLEFAK 96
>UNIPROTKB|F1NAP9 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0010862 "positive regulation of pathway-restricted SMAD protein
phosphorylation" evidence=IEA] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:AADN02016141 IPI:IPI00588016
Ensembl:ENSGALT00000016744 Uniprot:F1NAP9
Length = 196
Score = 127 (49.8 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 39/97 (40%), Positives = 53/97 (54%)
Query: 143 PLPPDASS----TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCF 198
P P DA TL+V GLP D RE+ +FRPF GY E L+ KL P+ F
Sbjct: 13 PRPADALPLQVRTLFVSGLPLDIKPRELYLLFRPFKGY-EGSLI----KLTSKQPV--GF 65
Query: 199 VDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSR 235
V F++ + A A +AL G R D + P + LRL+F++
Sbjct: 66 VSFDSRSEAEAAKNALNGIRFDPEIPQT--LRLEFAK 100
>UNIPROTKB|Q93062 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003713 "transcription coactivator activity"
evidence=IDA] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IDA]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=IDA] [GO:0008143 "poly(A) RNA binding"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
EMBL:CH471080 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0006396 GO:GO:0003713 GO:GO:0010862 GO:GO:0060391
GO:GO:0008143 HOGENOM:HOG000017369 HOVERGEN:HBG069897 EMBL:D84110
EMBL:D84107 EMBL:D84108 EMBL:D84109 EMBL:D84111 EMBL:BC003608
IPI:IPI00004045 IPI:IPI00101800 IPI:IPI00216935 IPI:IPI00216936
IPI:IPI00414709 PIR:JC6127 RefSeq:NP_001008710.1
RefSeq:NP_001008711.1 RefSeq:NP_001008712.1 RefSeq:NP_006858.1
UniGene:Hs.334587 PDB:1BNY PDBsum:1BNY ProteinModelPortal:Q93062
SMR:Q93062 IntAct:Q93062 MINT:MINT-1434067 STRING:Q93062
DMDM:13124469 PaxDb:Q93062 PRIDE:Q93062 Ensembl:ENST00000287771
Ensembl:ENST00000320203 Ensembl:ENST00000339877
Ensembl:ENST00000397323 GeneID:11030 KEGG:hsa:11030 UCSC:uc003xib.3
UCSC:uc003xic.1 UCSC:uc003xid.1 CTD:11030 GeneCards:GC08P030242
HGNC:HGNC:19097 MIM:601558 neXtProt:NX_Q93062 PharmGKB:PA134985584
eggNOG:NOG292253 OMA:PEVWGPY OrthoDB:EOG4NGGNV ChiTaRS:RBPMS
GenomeRNAi:11030 NextBio:41912 ArrayExpress:Q93062 Bgee:Q93062
CleanEx:HS_RBPMS Genevestigator:Q93062 GermOnline:ENSG00000157110
Uniprot:Q93062
Length = 196
Score = 124 (48.7 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 210
TL+V GLP D RE+ +FRPF GY E L+ KL P+ FV F++ + A A
Sbjct: 25 TLFVSGLPLDIKPRELYLLFRPFKGY-EGSLI----KLTSKQPV--GFVSFDSRSEAEAA 77
Query: 211 LSALQGYRMDEDDPDSKFLRLQFSR 235
+AL G R D + P + LRL+F++
Sbjct: 78 KNALNGIRFDPEIPQT--LRLEFAK 100
>MGI|MGI:1334446 [details] [associations]
symbol:Rbpms "RNA binding protein gene with multiple
splicing" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0010862 "positive regulation of pathway-restricted SMAD protein
phosphorylation" evidence=ISO] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1334446 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003713
GO:GO:0010862 GO:GO:0060391 GO:GO:0008143 HOGENOM:HOG000017369
HOVERGEN:HBG069897 CTD:11030 eggNOG:NOG292253 OrthoDB:EOG4NGGNV
ChiTaRS:RBPMS EMBL:AF148511 EMBL:AK012265 EMBL:AK012586
EMBL:AK041118 EMBL:AC123616 EMBL:AC127551 EMBL:AC162523
EMBL:BC030397 IPI:IPI00122127 IPI:IPI00125806 IPI:IPI00132006
RefSeq:NP_001036139.1 RefSeq:NP_001036140.1 RefSeq:NP_062707.1
UniGene:Mm.323997 ProteinModelPortal:Q9WVB0 SMR:Q9WVB0
STRING:Q9WVB0 PaxDb:Q9WVB0 PRIDE:Q9WVB0 Ensembl:ENSMUST00000033994
Ensembl:ENSMUST00000033995 Ensembl:ENSMUST00000053251 GeneID:19663
KEGG:mmu:19663 NextBio:296958 CleanEx:MM_RBPMS
Genevestigator:Q9WVB0 GermOnline:ENSMUSG00000031586 Uniprot:Q9WVB0
Length = 197
Score = 124 (48.7 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 210
TL+V GLP D RE+ +FRPF GY E L+ KL P+ FV F++ + A A
Sbjct: 25 TLFVSGLPLDIKPRELYLLFRPFKGY-EGSLI----KLTSKQPV--GFVSFDSRSEAEAA 77
Query: 211 LSALQGYRMDEDDPDSKFLRLQFSR 235
+AL G R D + P + LRL+F++
Sbjct: 78 KNALNGIRFDPEIPQT--LRLEFAK 100
>UNIPROTKB|F1M9Y9 [details] [associations]
symbol:Rbpms "Protein Rbpms" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0010862
"positive regulation of pathway-restricted SMAD protein
phosphorylation" evidence=IEA] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1561067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713
GO:GO:0010862 GO:GO:0060391 GO:GO:0008143
GeneTree:ENSGT00500000044861 IPI:IPI00364663
Ensembl:ENSRNOT00000017883 ArrayExpress:F1M9Y9 Uniprot:F1M9Y9
Length = 198
Score = 124 (48.7 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 210
TL+V GLP D RE+ +FRPF GY E L+ KL P+ FV F++ + A A
Sbjct: 3 TLFVSGLPLDIKPRELYLLFRPFKGY-EGSLI----KLTSKQPV--GFVSFDSRSEAEAA 55
Query: 211 LSALQGYRMDEDDPDSKFLRLQFSR 235
+AL G R D + P + LRL+F++
Sbjct: 56 KNALNGIRFDPEIPQT--LRLEFAK 78
>UNIPROTKB|G5EH29 [details] [associations]
symbol:MGCH7_ch7g848 "RNA binding protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM000230 EMBL:CM001237 RefSeq:XP_003720628.1
ProteinModelPortal:G5EH29 EnsemblFungi:MGG_03053T0 GeneID:2682606
KEGG:mgr:MGG_03053 Uniprot:G5EH29
Length = 622
Score = 134 (52.2 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 64/217 (29%), Positives = 96/217 (44%)
Query: 31 LSRHDMHNYLSQDDDLGELQPLKDTSTIGSAYDRYLQSAQYSSFTSGEASAFSGDRLRRA 90
+S + N + DD+ GEL LKD Q A+ ++ S +G L
Sbjct: 301 MSGKSLINDAADDDETGEL--LKDPLAYAENGAMATQ-ARRATAPQLPISRMAGLSLNT- 356
Query: 91 VPGGVTRLPVSDPSVTGRHGATGPDLVQNLRSSSIDDQLPFDAAAR-PGHETLPL-PPDA 148
G P PS G+ A + + + + + + R PGH P+ P D
Sbjct: 357 --NGHPMAPYG-PSPVGQLSAHTNTMSPTMLNGAGTPTMGYLGGHRFPGHSFPPVNPADQ 413
Query: 149 S---STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPA 205
+ +TLYV LP D+++ E+ F GYK RL + +K G P+ CFV+FE+ +
Sbjct: 414 NPPCNTLYVGNLPIDTSEEELKATFSKQRGYK--RLCFR-TKQNG--PM--CFVEFEDVS 466
Query: 206 CAATALSALQGYRMDEDDPDSKFLRLQFSRNP-GPRS 241
A AL L G+ + +RL FS+NP G RS
Sbjct: 467 FATKALHELYGHMLHNSVKGG--IRLSFSKNPLGVRS 501
>POMBASE|SPCC16C4.07 [details] [associations]
symbol:scw1 "RNA-binding protein Scw1" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0032955 "regulation of
barrier septum assembly" evidence=IGI] [GO:0032995 "regulation of
fungal-type cell wall biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPCC16C4.07 GO:GO:0005737 GO:GO:0032995 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032955 OrthoDB:EOG42592X PIR:T41097
RefSeq:NP_587917.1 ProteinModelPortal:O74452 STRING:O74452
EnsemblFungi:SPCC16C4.07.1 GeneID:2539358 KEGG:spo:SPCC16C4.07
eggNOG:NOG255497 NextBio:20800523 Uniprot:O74452
Length = 561
Score = 133 (51.9 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 60/191 (31%), Positives = 88/191 (46%)
Query: 65 YLQSAQ-YSSFTSGEASAFSGDRLRRAVPGGVTRLPVSDPSVTGRHGATGPDLVQNLRSS 123
YL S + YS+ T ++ R+ A T P P +T +T D +S
Sbjct: 336 YLSSEKGYSAHTQNSSAQSPHPRVFSANSAFSTTSP---PPLTP---STSRDYP--FSAS 387
Query: 124 SIDDQLPFDA-AARPG-HETLPL-------PPDAS---STLYVEGLPADSTKREVAHIFR 171
+I PF A ++ G H+ +P P D + +T+YV LP +++ E+ +F
Sbjct: 388 TISPSTPFSAYSSSHGIHQRIPASTPTNTNPADQNPPCNTIYVGNLPPSTSEEELKVLFS 447
Query: 172 PFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRL 231
VGYK RL + +G P+ CFV+FEN A AL LQG + +RL
Sbjct: 448 TQVGYK--RLCFRT---KGNGPM--CFVEFENIPYAMEALKNLQGVCLSSSIKGG--IRL 498
Query: 232 QFSRNP-GPRS 241
FS+NP G RS
Sbjct: 499 SFSKNPLGVRS 509
>UNIPROTKB|F1RX64 [details] [associations]
symbol:RBPMS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060391 "positive regulation of SMAD protein import
into nucleus" evidence=IEA] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:CU914373 EMBL:FP236445
Ensembl:ENSSSCT00000017254 Uniprot:F1RX64
Length = 215
Score = 124 (48.7 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 210
TL+V GLP D RE+ +FRPF GY E L+ KL P+ FV F++ + A A
Sbjct: 25 TLFVSGLPLDIKPRELYLLFRPFKGY-EGSLI----KLTSKQPV--GFVSFDSRSEAEAA 77
Query: 211 LSALQGYRMDEDDPDSKFLRLQFSR 235
+AL G R D + P + LRL+F++
Sbjct: 78 KNALNGIRFDPEIPQT--LRLEFAK 100
>UNIPROTKB|F1MAV3 [details] [associations]
symbol:RBPMS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060391 "positive regulation of SMAD protein import
into nucleus" evidence=IEA] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:DAAA02060452 IPI:IPI00722097
UniGene:Bt.106824 Ensembl:ENSBTAT00000047899 Uniprot:F1MAV3
Length = 219
Score = 124 (48.7 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 210
TL+V GLP D RE+ +FRPF GY E L+ KL P+ FV F++ + A A
Sbjct: 25 TLFVSGLPLDIKPRELYLLFRPFKGY-EGSLI----KLTSKQPV--GFVSFDSRSEAEAA 77
Query: 211 LSALQGYRMDEDDPDSKFLRLQFSR 235
+AL G R D + P + LRL+F++
Sbjct: 78 KNALNGIRFDPEIPQT--LRLEFAK 100
>UNIPROTKB|E2R5F7 [details] [associations]
symbol:RBPMS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060391 "positive regulation of SMAD protein
import into nucleus" evidence=IEA] [GO:0010862 "positive regulation
of pathway-restricted SMAD protein phosphorylation" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 CTD:11030 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:AAEX03010423 EMBL:AAEX03010424
RefSeq:XP_532815.3 ProteinModelPortal:E2R5F7 PRIDE:E2R5F7
Ensembl:ENSCAFT00000010500 GeneID:475599 KEGG:cfa:475599
NextBio:20851407 Uniprot:E2R5F7
Length = 219
Score = 124 (48.7 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 210
TL+V GLP D RE+ +FRPF GY E L+ KL P+ FV F++ + A A
Sbjct: 25 TLFVSGLPLDIKPRELYLLFRPFKGY-EGSLI----KLTSKQPV--GFVSFDSRSEAEAA 77
Query: 211 LSALQGYRMDEDDPDSKFLRLQFSR 235
+AL G R D + P + LRL+F++
Sbjct: 78 KNALNGIRFDPEIPQT--LRLEFAK 100
>UNIPROTKB|B4E3T4 [details] [associations]
symbol:RBPMS "HCG2043421, isoform CRA_c" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471080 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000017369 HOVERGEN:HBG069897 UniGene:Hs.334587
HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945 EMBL:AC011204
EMBL:AC109329 EMBL:AK304858 IPI:IPI00908913 SMR:B4E3T4
STRING:B4E3T4 Ensembl:ENST00000517860 UCSC:uc011lba.1
Uniprot:B4E3T4
Length = 224
Score = 124 (48.7 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 210
TL+V GLP D RE+ +FRPF GY E L+ KL P+ FV F++ + A A
Sbjct: 25 TLFVSGLPLDIKPRELYLLFRPFKGY-EGSLI----KLTSKQPV--GFVSFDSRSEAEAA 77
Query: 211 LSALQGYRMDEDDPDSKFLRLQFSR 235
+AL G R D + P + LRL+F++
Sbjct: 78 KNALNGIRFDPEIPQT--LRLEFAK 100
>ASPGD|ASPL0000063387 [details] [associations]
symbol:AN7700 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0032995 "regulation of
fungal-type cell wall biogenesis" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001304 EMBL:AACD01000130
OrthoDB:EOG42592X eggNOG:NOG255497 RefSeq:XP_680969.1
ProteinModelPortal:Q5AVI0 EnsemblFungi:CADANIAT00000831
GeneID:2869448 KEGG:ani:AN7700.2 HOGENOM:HOG000174215 OMA:NSVKGGI
Uniprot:Q5AVI0
Length = 628
Score = 131 (51.2 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 53/160 (33%), Positives = 75/160 (46%)
Query: 93 GGVTRLPVSDPS---VTGRHGATG-PDLVQNLRSSSIDDQLPFDAAARPGHETLPLPPDA 148
GG + + PS +GA G P N + ++ P AA P PP
Sbjct: 361 GGSAHMAIPTPSSAYTPPMNGAVGNPGFPYNSQHTA-RHSFP---AANPNDMN---PP-- 411
Query: 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAA 208
+TLYV LP D+ + E+ +F GYK RL + +K G P+ CFV+FE+ A
Sbjct: 412 CNTLYVGNLPPDTQEEELKALFSKQRGYK--RLCFR-NKQNG--PM--CFVEFEDVRTAG 464
Query: 209 TALSALQGYRMDEDDPDSKFLRLQFSRNP-GPRSVFGARG 247
L+ L GY++ +RL FS+NP G RS G +G
Sbjct: 465 KTLNELYGYKLSNSIKTG--IRLSFSKNPLGVRS--GQQG 500
>FB|FBgn0263995 [details] [associations]
symbol:cpo "couch potato" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS;IDA] [GO:0007422 "peripheral nervous system
development" evidence=NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0009987 "cellular process" evidence=IMP] [GO:0007268 "synaptic
transmission" evidence=IMP] [GO:0042048 "olfactory behavior"
evidence=IMP] [GO:0022611 "dormancy process" evidence=IMP]
[GO:0035206 "regulation of hemocyte proliferation" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0007275 GO:GO:0005634
GO:GO:0000166 GO:GO:0007268 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0042048 GO:GO:0035206 CTD:130749 EMBL:Z14311 EMBL:Z14312
EMBL:Z14974 EMBL:AY129455 EMBL:BT001569 PIR:A46230 PIR:S24761
RefSeq:NP_001014631.2 RefSeq:NP_001014632.2 RefSeq:NP_001163640.1
RefSeq:NP_001163641.1 RefSeq:NP_524844.5 RefSeq:NP_732282.5
RefSeq:NP_732283.4 RefSeq:NP_732284.4 UniGene:Dm.6154
ProteinModelPortal:Q01617 SMR:Q01617 IntAct:Q01617 MINT:MINT-335471
STRING:Q01617 PaxDb:Q01617 GeneID:45840 GeneID:8674070
KEGG:dme:Dmel_CG31243 KEGG:dme:Dmel_CG42457 FlyBase:FBgn0000363
eggNOG:NOG255204 InParanoid:Q01617 OrthoDB:EOG4H44N8 ChiTaRS:CPO
NextBio:838394 Bgee:Q01617 GermOnline:CG31243 GO:GO:0022611
Uniprot:Q01617
Length = 738
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 31/86 (36%), Positives = 46/86 (53%)
Query: 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 210
TL+V GLP D+ RE+ +FR + GY+ L + + P+ FV F A A A
Sbjct: 452 TLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPV--GFVTFHTRAGAEAA 509
Query: 211 LSALQGYRMDEDDPDSKFLRLQFSRN 236
LQG R D D P + +RL+F+++
Sbjct: 510 KQDLQGVRFDPDMPQT--IRLEFAKS 533
>TAIR|locus:2061976 [details] [associations]
symbol:U1A "spliceosomal protein U1A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0009651 "response to salt stress"
evidence=IGI] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=ISS;IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
EMBL:AC002535 GO:GO:0017069 GO:GO:0005685 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P09012 EMBL:Z49991 EMBL:AY052663
EMBL:AY059875 EMBL:AY093341 EMBL:AY142070 IPI:IPI00542976
PIR:S59118 RefSeq:NP_182280.1 UniGene:At.200
ProteinModelPortal:Q39244 SMR:Q39244 IntAct:Q39244 STRING:Q39244
PaxDb:Q39244 PRIDE:Q39244 EnsemblPlants:AT2G47580.1 GeneID:819371
KEGG:ath:AT2G47580 GeneFarm:4533 TAIR:At2g47580
HOGENOM:HOG000217519 InParanoid:Q39244 KO:K11091 OMA:ATNAMRT
PhylomeDB:Q39244 ProtClustDB:CLSN2683617 Genevestigator:Q39244
Uniprot:Q39244
Length = 250
Score = 115 (45.5 bits), Expect = 0.00013, P = 0.00013
Identities = 28/95 (29%), Positives = 53/95 (55%)
Query: 128 QLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK 187
Q+P+ +P P PP+ + L+V+ LP ++T + +F + G+KEVR++ E+K
Sbjct: 157 QVPYPGGMKPNMPEAPAPPN--NILFVQNLPHETTPMVLQMLFCQYQGFKEVRMI--EAK 212
Query: 188 LRGGDPLILCFVDFENPACAATALSALQGYRMDED 222
P I FV+F + + A+ LQG+++ ++
Sbjct: 213 -----PGI-AFVEFADEMQSTVAMQGLQGFKIQQN 241
>UNIPROTKB|B8AM21 [details] [associations]
symbol:OsI_11177 "U2 small nuclear ribonucleoprotein B''"
species:39946 "Oryza sativa Indica Group" [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0015030
"Cajal body" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030
GO:GO:0000398 GO:GO:0017069 GO:GO:0005686 EMBL:CM000128
eggNOG:NOG317159 PANTHER:PTHR10501 HOGENOM:HOG000217519
ProteinModelPortal:B8AM21 STRING:B8AM21 Gramene:B8AM21
Uniprot:B8AM21
Length = 232
Score = 112 (44.5 bits), Expect = 0.00023, P = 0.00023
Identities = 27/91 (29%), Positives = 55/91 (60%)
Query: 134 AARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDP 193
A+R G + P ++ L+++ LPA++T + +F+ + G++EVR++ E+K P
Sbjct: 142 ASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQQYPGFREVRMI--EAK-----P 194
Query: 194 LILCFVDFENPACAATALSALQGYRMDEDDP 224
I FV++E+ + + A+ ALQG+++ +P
Sbjct: 195 GI-AFVEYEDDSQSMVAMQALQGFKITPYNP 224
>UNIPROTKB|Q10MR0 [details] [associations]
symbol:LOC_Os03g18720 "U2 small nuclear ribonucleoprotein
B''" species:39947 "Oryza sativa Japonica Group" [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS]
[GO:0015030 "Cajal body" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
EMBL:DP000009 EMBL:AP008209 GO:GO:0015030 GO:GO:0000398
EMBL:CM000140 GO:GO:0017069 GO:GO:0005686 eggNOG:NOG317159
PANTHER:PTHR10501 HOGENOM:HOG000217519 ProtClustDB:CLSN2683617
KO:K11094 OMA:DIACATQ EMBL:AK103337 RefSeq:NP_001049846.1
UniGene:Os.75636 ProteinModelPortal:Q10MR0 STRING:Q10MR0
PRIDE:Q10MR0 EnsemblPlants:LOC_Os03g18720.1 GeneID:4332557
KEGG:dosa:Os03t0298800-01 KEGG:osa:4332557 Gramene:Q10MR0
Uniprot:Q10MR0
Length = 232
Score = 112 (44.5 bits), Expect = 0.00023, P = 0.00023
Identities = 27/91 (29%), Positives = 55/91 (60%)
Query: 134 AARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDP 193
A+R G + P ++ L+++ LPA++T + +F+ + G++EVR++ E+K P
Sbjct: 142 ASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQQYPGFREVRMI--EAK-----P 194
Query: 194 LILCFVDFENPACAATALSALQGYRMDEDDP 224
I FV++E+ + + A+ ALQG+++ +P
Sbjct: 195 GI-AFVEYEDDSQSMVAMQALQGFKITPYNP 224
>TAIR|locus:2065742 [details] [associations]
symbol:U2B'' "U2 small nuclear ribonucleoprotein B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000354 "cis assembly of pre-catalytic
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0015030 "Cajal body"
evidence=IDA] [GO:0005686 "U2 snRNP" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030 EMBL:AC002338
GO:GO:0017069 GO:GO:0005686 GO:GO:0000354 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
ProtClustDB:CLSN2683617 EMBL:BT003068 EMBL:AK227609 EMBL:AY087401
IPI:IPI00546965 PIR:C84706 RefSeq:NP_180585.1 UniGene:At.19782
ProteinModelPortal:O22922 SMR:O22922 IntAct:O22922 STRING:O22922
PaxDb:O22922 PRIDE:O22922 EnsemblPlants:AT2G30260.1 GeneID:817576
KEGG:ath:AT2G30260 GeneFarm:4539 TAIR:At2g30260 InParanoid:O22922
KO:K11094 OMA:TTANKKP PhylomeDB:O22922 Genevestigator:O22922
Uniprot:O22922
Length = 232
Score = 109 (43.4 bits), Expect = 0.00053, P = 0.00053
Identities = 31/114 (27%), Positives = 62/114 (54%)
Query: 111 ATGPDLVQNLRSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIF 170
A GP + S ++ +P + G ET+P P+ + L+++ LP ++T + +F
Sbjct: 127 ANGP----SANGPSANNGVPAPSFQPSGQETMP--PN--NILFIQNLPHETTSMMLQLLF 178
Query: 171 RPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 224
+ G+KE+R++ ++K P I FV++E+ A+ A+ LQG+++ +P
Sbjct: 179 EQYPGFKEIRMI--DAK-----PGI-AFVEYEDDVQASIAMQPLQGFKITPQNP 224
>SGD|S000002383 [details] [associations]
symbol:WHI4 "Putative RNA binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008361 "regulation of cell size"
evidence=IGI] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000002383 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006938 GO:GO:0008361
GO:GO:0003723 OrthoDB:EOG42592X HSSP:P09012 eggNOG:NOG255497
GeneTree:ENSGT00530000067542 HOGENOM:HOG000074699 EMBL:Z74272
PIR:S67787 RefSeq:NP_010057.1 ProteinModelPortal:Q07655 SMR:Q07655
DIP:DIP-4321N IntAct:Q07655 MINT:MINT-531190 STRING:Q07655
PaxDb:Q07655 PeptideAtlas:Q07655 EnsemblFungi:YDL224C GeneID:851302
KEGG:sce:YDL224C CYGD:YDL224c NextBio:968310 Genevestigator:Q07655
GermOnline:YDL224C Uniprot:Q07655
Length = 649
Score = 114 (45.2 bits), Expect = 0.00085, P = 0.00085
Identities = 33/99 (33%), Positives = 55/99 (55%)
Query: 145 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPL---ILCFVDF 201
PP +TLYV LP D+T++E+ +F G++ + K + G+ +CFV+F
Sbjct: 530 PP--CNTLYVGNLPPDATEQELRQLFSNQQGFRRLSFRNKMNSHGHGNGHGHGPICFVEF 587
Query: 202 ENPACAATALSALQGYRMDEDDP--DSKF-LRLQFSRNP 237
E+ + A AL+ L G ++ P ++K +RL FS+NP
Sbjct: 588 EDVSFATRALAELYGSQLPHPRPSLNNKGGIRLSFSKNP 626
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.136 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 249 249 0.00080 114 3 11 22 0.47 33
32 0.46 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 37
No. of states in DFA: 568 (60 KB)
Total size of DFA: 167 KB (2099 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.74u 0.10s 23.84t Elapsed: 00:00:01
Total cpu time: 23.74u 0.10s 23.84t Elapsed: 00:00:01
Start: Fri May 10 21:19:12 2013 End: Fri May 10 21:19:13 2013