Query 025677
Match_columns 249
No_of_seqs 323 out of 1382
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:20:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 9.8E-19 2.1E-23 143.7 14.3 81 149-237 34-114 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 7.6E-17 1.7E-21 148.0 12.5 83 149-239 269-351 (352)
3 TIGR01659 sex-lethal sex-letha 99.7 6.1E-16 1.3E-20 143.7 15.9 82 148-237 106-187 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2.4E-16 5.1E-21 144.7 10.9 81 149-237 3-83 (352)
5 PF00076 RRM_1: RNA recognitio 99.6 7.5E-16 1.6E-20 108.7 8.2 70 152-230 1-70 (70)
6 KOG0122 Translation initiation 99.6 2.2E-15 4.8E-20 131.5 10.4 82 148-237 188-269 (270)
7 TIGR01659 sex-lethal sex-letha 99.6 3.3E-15 7.2E-20 138.8 11.7 83 149-237 193-275 (346)
8 KOG0121 Nuclear cap-binding pr 99.6 2.7E-15 5.8E-20 119.8 7.0 80 148-235 35-114 (153)
9 KOG0107 Alternative splicing f 99.6 1.2E-14 2.6E-19 121.5 8.6 78 149-239 10-87 (195)
10 PLN03120 nucleic acid binding 99.5 3.5E-14 7.5E-19 126.3 10.2 76 149-236 4-79 (260)
11 PF14259 RRM_6: RNA recognitio 99.5 9.7E-14 2.1E-18 98.9 9.8 66 152-221 1-66 (70)
12 KOG0125 Ataxin 2-binding prote 99.5 8.5E-14 1.9E-18 125.9 10.5 78 149-236 96-173 (376)
13 TIGR01645 half-pint poly-U bin 99.5 8.4E-14 1.8E-18 137.1 10.9 81 149-237 204-284 (612)
14 TIGR01622 SF-CC1 splicing fact 99.5 9.3E-14 2E-18 132.2 10.7 80 149-236 186-265 (457)
15 TIGR01645 half-pint poly-U bin 99.5 7.3E-14 1.6E-18 137.5 10.0 81 148-236 106-186 (612)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.5 1.4E-13 3E-18 132.6 11.7 81 148-236 294-374 (509)
17 KOG0113 U1 small nuclear ribon 99.5 1.8E-13 3.9E-18 122.5 11.2 83 147-237 99-181 (335)
18 TIGR01628 PABP-1234 polyadenyl 99.5 1.1E-13 2.5E-18 135.3 10.5 78 151-236 2-79 (562)
19 KOG0105 Alternative splicing f 99.5 8E-14 1.7E-18 117.7 7.6 77 149-236 6-82 (241)
20 TIGR01648 hnRNP-R-Q heterogene 99.5 2.7E-13 5.9E-18 133.1 12.0 73 149-237 233-307 (578)
21 smart00362 RRM_2 RNA recogniti 99.5 5.8E-13 1.3E-17 92.4 9.3 71 151-231 1-71 (72)
22 KOG0149 Predicted RNA-binding 99.5 1.6E-13 3.5E-18 119.4 7.5 78 150-236 13-90 (247)
23 TIGR01628 PABP-1234 polyadenyl 99.4 2.8E-13 6.1E-18 132.6 9.9 81 148-237 284-364 (562)
24 KOG0114 Predicted RNA-binding 99.4 6E-13 1.3E-17 102.9 9.4 84 141-235 10-93 (124)
25 TIGR01622 SF-CC1 splicing fact 99.4 4.5E-13 9.7E-18 127.5 10.5 81 148-237 88-168 (457)
26 COG0724 RNA-binding proteins ( 99.4 6.1E-13 1.3E-17 113.5 9.9 79 149-235 115-193 (306)
27 TIGR01648 hnRNP-R-Q heterogene 99.4 5.9E-13 1.3E-17 130.7 10.8 79 148-234 57-135 (578)
28 PLN03121 nucleic acid binding 99.4 8.4E-13 1.8E-17 116.1 9.8 75 149-235 5-79 (243)
29 KOG4207 Predicted splicing fac 99.4 4.4E-13 9.5E-18 114.9 7.7 81 149-237 13-93 (256)
30 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 8.7E-13 1.9E-17 127.4 10.4 76 148-237 1-78 (481)
31 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.1E-12 2.3E-17 126.7 11.0 77 148-237 274-351 (481)
32 KOG0148 Apoptosis-promoting RN 99.4 1.1E-12 2.4E-17 116.2 9.7 75 149-237 164-238 (321)
33 smart00360 RRM RNA recognition 99.4 1.7E-12 3.7E-17 89.5 8.3 71 154-232 1-71 (71)
34 KOG0144 RNA-binding protein CU 99.4 3.6E-13 7.7E-18 125.6 6.0 87 149-241 124-210 (510)
35 cd00590 RRM RRM (RNA recogniti 99.4 4E-12 8.7E-17 88.5 9.9 74 151-233 1-74 (74)
36 KOG0130 RNA-binding protein RB 99.4 1.2E-12 2.6E-17 105.6 7.8 83 149-239 72-154 (170)
37 KOG0148 Apoptosis-promoting RN 99.4 1E-12 2.2E-17 116.4 7.9 82 149-238 62-143 (321)
38 KOG0126 Predicted RNA-binding 99.4 8.4E-14 1.8E-18 117.2 0.7 81 148-236 34-114 (219)
39 PLN03213 repressor of silencin 99.4 1.8E-12 3.9E-17 122.7 9.4 76 149-236 10-87 (759)
40 KOG0145 RNA-binding protein EL 99.4 1.8E-12 4E-17 114.5 8.4 81 149-237 41-121 (360)
41 KOG0111 Cyclophilin-type pepti 99.4 5E-13 1.1E-17 115.6 4.6 88 147-242 8-95 (298)
42 KOG0144 RNA-binding protein CU 99.4 2.5E-12 5.3E-17 120.0 9.2 88 148-240 33-120 (510)
43 KOG0108 mRNA cleavage and poly 99.4 1.7E-12 3.6E-17 123.5 8.0 82 150-239 19-100 (435)
44 KOG0145 RNA-binding protein EL 99.3 5.8E-12 1.3E-16 111.4 9.4 81 149-237 278-358 (360)
45 KOG0117 Heterogeneous nuclear 99.3 1.3E-11 2.8E-16 115.6 10.4 81 149-236 83-163 (506)
46 KOG4206 Spliceosomal protein s 99.3 6.9E-12 1.5E-16 108.6 7.7 78 149-237 9-90 (221)
47 KOG0131 Splicing factor 3b, su 99.3 4.8E-12 1E-16 106.6 6.2 81 147-235 7-87 (203)
48 KOG0117 Heterogeneous nuclear 99.3 6E-12 1.3E-16 117.9 7.3 73 149-237 259-331 (506)
49 PF13893 RRM_5: RNA recognitio 99.3 3E-11 6.4E-16 83.0 8.6 56 166-234 1-56 (56)
50 KOG0109 RNA-binding protein LA 99.3 4.7E-12 1E-16 113.2 5.4 72 150-237 3-74 (346)
51 KOG0415 Predicted peptidyl pro 99.2 1.3E-11 2.9E-16 112.9 6.7 80 149-236 239-318 (479)
52 KOG0146 RNA-binding protein ET 99.2 2E-11 4.4E-16 108.3 5.8 83 148-238 284-366 (371)
53 KOG0127 Nucleolar protein fibr 99.2 4.5E-11 9.7E-16 114.4 8.5 80 149-237 117-196 (678)
54 KOG0132 RNA polymerase II C-te 99.2 5.6E-11 1.2E-15 117.4 7.9 80 148-241 420-499 (894)
55 KOG1457 RNA binding protein (c 99.2 3.2E-10 6.9E-15 98.5 11.1 87 146-237 31-118 (284)
56 KOG0146 RNA-binding protein ET 99.1 9.9E-11 2.1E-15 104.0 7.3 86 149-240 19-104 (371)
57 KOG0127 Nucleolar protein fibr 99.1 1.2E-10 2.7E-15 111.4 8.4 79 149-235 292-376 (678)
58 KOG0124 Polypyrimidine tract-b 99.1 1.3E-10 2.8E-15 106.9 4.9 78 150-235 114-191 (544)
59 KOG0109 RNA-binding protein LA 99.1 1.8E-10 3.8E-15 103.3 5.2 74 148-237 77-150 (346)
60 smart00361 RRM_1 RNA recogniti 99.0 7.6E-10 1.7E-14 79.7 7.4 62 163-231 2-69 (70)
61 KOG0147 Transcriptional coacti 99.0 3E-10 6.4E-15 108.8 6.3 76 151-235 280-356 (549)
62 KOG4212 RNA-binding protein hn 99.0 1.2E-09 2.6E-14 102.5 10.1 73 149-234 536-608 (608)
63 TIGR01642 U2AF_lg U2 snRNP aux 99.0 8.5E-10 1.8E-14 106.3 9.4 84 148-236 408-501 (509)
64 KOG4212 RNA-binding protein hn 99.0 6.5E-10 1.4E-14 104.3 8.2 77 150-235 45-122 (608)
65 KOG0153 Predicted RNA-binding 99.0 1.1E-09 2.3E-14 100.2 8.1 75 149-237 228-303 (377)
66 KOG0110 RNA-binding protein (R 99.0 4.8E-10 1E-14 110.0 5.2 81 149-237 613-693 (725)
67 KOG0131 Splicing factor 3b, su 99.0 9.2E-10 2E-14 92.9 5.8 85 149-241 96-181 (203)
68 KOG0123 Polyadenylate-binding 98.9 2.1E-09 4.6E-14 100.9 8.3 77 152-239 79-155 (369)
69 KOG4208 Nucleolar RNA-binding 98.9 2.1E-09 4.6E-14 92.2 7.4 80 149-236 49-129 (214)
70 KOG0110 RNA-binding protein (R 98.9 2.4E-09 5.3E-14 105.1 8.0 80 151-235 517-596 (725)
71 KOG1457 RNA binding protein (c 98.8 3.6E-09 7.7E-14 92.0 4.1 70 148-224 209-278 (284)
72 KOG0124 Polypyrimidine tract-b 98.8 4.9E-09 1.1E-13 96.7 4.4 166 38-235 122-288 (544)
73 KOG0533 RRM motif-containing p 98.8 2.5E-08 5.4E-13 88.5 8.0 80 149-237 83-162 (243)
74 KOG0123 Polyadenylate-binding 98.8 2.5E-08 5.4E-13 93.7 8.4 74 150-237 2-75 (369)
75 KOG4209 Splicing factor RNPS1, 98.8 2.2E-08 4.7E-13 88.5 7.4 80 149-237 101-180 (231)
76 KOG0151 Predicted splicing reg 98.7 3.6E-08 7.8E-13 97.1 7.9 83 149-236 174-256 (877)
77 KOG0116 RasGAP SH3 binding pro 98.7 5.8E-08 1.3E-12 92.3 8.4 80 148-236 287-366 (419)
78 KOG0106 Alternative splicing f 98.6 3.2E-08 6.9E-13 86.2 5.1 72 150-237 2-73 (216)
79 KOG4454 RNA binding protein (R 98.6 1.9E-08 4.2E-13 87.2 2.6 76 149-234 9-84 (267)
80 KOG4206 Spliceosomal protein s 98.6 2.7E-07 5.9E-12 80.2 9.0 76 148-235 145-220 (221)
81 KOG4660 Protein Mei2, essentia 98.6 7.4E-08 1.6E-12 92.7 5.4 70 148-230 74-143 (549)
82 KOG1548 Transcription elongati 98.6 2.6E-07 5.7E-12 84.7 8.5 81 148-237 133-221 (382)
83 KOG4205 RNA-binding protein mu 98.5 8.1E-08 1.8E-12 88.1 5.1 70 148-221 5-74 (311)
84 KOG4661 Hsp27-ERE-TATA-binding 98.5 2E-07 4.4E-12 90.2 6.9 81 149-237 405-485 (940)
85 KOG1190 Polypyrimidine tract-b 98.4 2.4E-06 5.1E-11 80.1 11.3 79 149-240 297-376 (492)
86 KOG0226 RNA-binding proteins [ 98.4 3E-07 6.4E-12 81.4 4.5 78 149-234 190-267 (290)
87 KOG4205 RNA-binding protein mu 98.4 7E-07 1.5E-11 82.0 7.1 81 148-237 96-176 (311)
88 PF04059 RRM_2: RNA recognitio 98.3 9.2E-06 2E-10 62.6 9.3 85 150-238 2-88 (97)
89 KOG1456 Heterogeneous nuclear 98.2 7.1E-06 1.5E-10 76.2 9.1 78 149-237 120-199 (494)
90 KOG1995 Conserved Zn-finger pr 98.2 5.4E-06 1.2E-10 76.5 7.8 81 149-237 66-154 (351)
91 KOG0120 Splicing factor U2AF, 98.1 3.2E-06 7E-11 81.8 4.8 81 148-236 288-368 (500)
92 KOG1190 Polypyrimidine tract-b 98.1 1.2E-05 2.7E-10 75.3 7.8 78 148-236 413-490 (492)
93 PF11608 Limkain-b1: Limkain b 98.1 2.6E-05 5.6E-10 58.5 8.0 69 150-236 3-76 (90)
94 KOG4211 Splicing factor hnRNP- 98.0 1.3E-05 2.8E-10 76.6 7.1 58 150-213 11-68 (510)
95 KOG1855 Predicted RNA-binding 97.9 1.6E-05 3.4E-10 75.0 5.3 70 148-217 230-309 (484)
96 KOG4210 Nuclear localization s 97.8 1.9E-05 4.2E-10 71.9 4.9 81 148-237 183-264 (285)
97 PF08777 RRM_3: RNA binding mo 97.8 5E-05 1.1E-09 59.2 6.4 59 150-217 2-60 (105)
98 KOG4307 RNA binding protein RB 97.8 0.00027 5.8E-09 70.3 11.5 76 149-233 867-943 (944)
99 KOG0147 Transcriptional coacti 97.6 1.4E-05 3E-10 77.2 0.6 80 148-236 178-257 (549)
100 KOG0106 Alternative splicing f 97.6 3.8E-05 8.2E-10 67.1 3.0 70 149-234 99-168 (216)
101 COG5175 MOT2 Transcriptional r 97.5 0.00025 5.5E-09 65.4 7.4 82 149-235 114-201 (480)
102 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.0002 4.4E-09 49.0 5.0 52 150-211 2-53 (53)
103 KOG4849 mRNA cleavage factor I 97.5 8.5E-05 1.9E-09 68.7 3.6 72 150-224 81-154 (498)
104 KOG1456 Heterogeneous nuclear 97.5 0.0023 4.9E-08 59.9 12.5 77 148-237 286-363 (494)
105 KOG4211 Splicing factor hnRNP- 97.5 0.0005 1.1E-08 66.0 8.4 60 150-213 104-164 (510)
106 KOG2314 Translation initiation 97.3 0.0005 1.1E-08 67.0 6.4 75 150-232 59-139 (698)
107 KOG0112 Large RNA-binding prot 97.3 0.00039 8.5E-09 70.8 5.6 79 149-239 455-533 (975)
108 KOG2416 Acinus (induces apopto 97.2 0.00039 8.4E-09 68.1 4.4 80 146-236 441-521 (718)
109 KOG0129 Predicted RNA-binding 97.2 0.00099 2.2E-08 64.3 6.9 66 148-214 258-326 (520)
110 KOG0128 RNA-binding protein SA 97.1 0.00021 4.5E-09 72.3 1.8 78 149-235 736-813 (881)
111 KOG0129 Predicted RNA-binding 97.0 0.0022 4.8E-08 61.9 7.4 67 143-213 364-432 (520)
112 KOG4676 Splicing factor, argin 96.8 0.0013 2.9E-08 61.7 4.5 71 150-221 8-78 (479)
113 KOG0120 Splicing factor U2AF, 96.8 0.0037 7.9E-08 60.9 7.7 63 166-234 426-489 (500)
114 KOG3152 TBP-binding protein, a 96.8 0.00086 1.9E-08 59.7 2.6 75 149-223 74-157 (278)
115 PF08675 RNA_bind: RNA binding 96.7 0.011 2.5E-07 44.3 7.9 54 150-215 10-63 (87)
116 KOG1548 Transcription elongati 96.7 0.0048 1E-07 57.2 7.2 75 148-234 264-349 (382)
117 KOG1365 RNA-binding protein Fu 96.7 0.0074 1.6E-07 56.7 8.5 61 149-213 161-225 (508)
118 KOG0105 Alternative splicing f 96.6 0.043 9.3E-07 47.2 11.7 62 150-221 116-177 (241)
119 PF05172 Nup35_RRM: Nup53/35/4 96.6 0.012 2.6E-07 45.6 7.5 78 149-235 6-90 (100)
120 PF08952 DUF1866: Domain of un 96.5 0.01 2.2E-07 48.9 6.7 55 165-236 52-106 (146)
121 KOG4307 RNA binding protein RB 96.2 0.0058 1.3E-07 61.1 4.5 84 142-234 427-511 (944)
122 KOG1365 RNA-binding protein Fu 96.0 0.015 3.2E-07 54.8 6.1 69 149-221 280-351 (508)
123 PF03467 Smg4_UPF3: Smg-4/UPF3 95.9 0.025 5.5E-07 48.0 6.7 87 149-237 7-98 (176)
124 PF10309 DUF2414: Protein of u 95.8 0.035 7.6E-07 39.3 5.9 54 150-214 6-62 (62)
125 KOG0112 Large RNA-binding prot 95.8 0.002 4.4E-08 65.7 -0.6 78 148-234 371-448 (975)
126 KOG0115 RNA-binding protein p5 95.7 0.011 2.3E-07 52.9 3.8 62 150-215 32-93 (275)
127 KOG2202 U2 snRNP splicing fact 95.6 0.0054 1.2E-07 54.7 1.5 61 166-235 85-146 (260)
128 KOG2193 IGF-II mRNA-binding pr 95.6 0.0091 2E-07 56.8 2.9 76 150-240 2-79 (584)
129 KOG0128 RNA-binding protein SA 94.2 0.0043 9.2E-08 63.1 -3.3 68 149-220 667-735 (881)
130 PF07576 BRAP2: BRCA1-associat 94.2 0.94 2E-05 35.6 10.5 79 150-235 14-93 (110)
131 KOG1996 mRNA splicing factor [ 94.2 0.13 2.7E-06 47.1 6.2 65 163-234 300-364 (378)
132 PF04847 Calcipressin: Calcipr 94.0 0.11 2.5E-06 44.4 5.4 62 162-237 8-71 (184)
133 KOG2068 MOT2 transcription fac 93.9 0.03 6.6E-07 51.7 1.7 82 149-237 77-163 (327)
134 KOG4574 RNA-binding protein (c 93.9 0.035 7.7E-07 56.7 2.3 73 152-236 301-373 (1007)
135 PF15023 DUF4523: Protein of u 92.6 0.32 6.9E-06 40.3 5.5 70 150-235 87-160 (166)
136 KOG2591 c-Mpl binding protein, 92.4 0.42 9E-06 47.2 7.0 64 148-221 174-246 (684)
137 KOG2253 U1 snRNP complex, subu 92.2 0.26 5.6E-06 49.3 5.4 62 149-222 40-101 (668)
138 PF03880 DbpA: DbpA RNA bindin 91.3 0.77 1.7E-05 33.1 6.0 59 159-234 11-74 (74)
139 KOG4660 Protein Mei2, essentia 91.0 0.37 8.1E-06 47.3 5.1 44 194-238 431-474 (549)
140 KOG2318 Uncharacterized conser 90.7 1.1 2.4E-05 44.4 8.0 85 147-234 172-305 (650)
141 KOG4285 Mitotic phosphoprotein 89.7 1.7 3.7E-05 40.0 7.9 62 150-222 198-259 (350)
142 KOG2135 Proteins containing th 87.7 0.29 6.3E-06 47.3 1.7 72 150-236 373-445 (526)
143 KOG0804 Cytoplasmic Zn-finger 86.6 2.6 5.7E-05 40.7 7.3 71 149-224 74-145 (493)
144 PF11767 SET_assoc: Histone ly 86.4 3.7 7.9E-05 29.4 6.4 50 160-221 11-60 (66)
145 KOG4210 Nuclear localization s 84.5 0.59 1.3E-05 42.7 1.9 70 149-221 88-157 (285)
146 KOG2193 IGF-II mRNA-binding pr 73.1 0.18 3.9E-06 48.2 -5.2 77 148-235 79-155 (584)
147 KOG4676 Splicing factor, argin 69.0 1 2.3E-05 42.8 -1.2 65 149-221 151-215 (479)
148 KOG2891 Surface glycoprotein [ 61.1 5.5 0.00012 36.6 1.9 88 149-237 149-268 (445)
149 KOG4454 RNA binding protein (R 59.2 2.5 5.5E-05 37.4 -0.5 69 149-221 80-152 (267)
150 PF00403 HMA: Heavy-metal-asso 58.4 52 0.0011 22.0 6.2 54 151-213 1-58 (62)
151 COG0724 RNA-binding proteins ( 55.7 15 0.00033 30.6 3.7 63 148-213 224-286 (306)
152 KOG4019 Calcineurin-mediated s 54.2 9 0.0002 32.9 2.0 74 150-236 11-89 (193)
153 KOG4008 rRNA processing protei 47.9 8.6 0.00019 34.3 0.9 31 149-179 40-70 (261)
154 KOG2295 C2H2 Zn-finger protein 47.9 3.5 7.7E-05 40.9 -1.6 71 149-222 231-301 (648)
155 PF03468 XS: XS domain; Inter 47.4 19 0.0004 28.5 2.7 51 151-207 10-69 (116)
156 TIGR03636 L23_arch archaeal ri 47.1 46 0.00099 24.4 4.6 57 151-213 15-73 (77)
157 KOG4483 Uncharacterized conser 46.4 25 0.00055 33.8 3.8 54 150-212 392-445 (528)
158 COG5638 Uncharacterized conser 44.1 69 0.0015 31.1 6.3 86 146-234 143-295 (622)
159 PRK14548 50S ribosomal protein 43.8 52 0.0011 24.6 4.5 57 152-214 23-81 (84)
160 KOG1295 Nonsense-mediated deca 43.6 30 0.00065 32.9 3.9 72 150-222 8-80 (376)
161 PF14893 PNMA: PNMA 42.4 20 0.00044 33.5 2.6 23 149-171 18-40 (331)
162 PF10567 Nab6_mRNP_bdg: RNA-re 38.2 47 0.001 30.7 4.1 84 149-235 15-106 (309)
163 PRK11634 ATP-dependent RNA hel 37.1 1.1E+02 0.0024 31.0 7.1 69 150-236 487-562 (629)
164 PF15513 DUF4651: Domain of un 33.5 73 0.0016 22.5 3.6 20 164-183 9-28 (62)
165 KOG4365 Uncharacterized conser 32.2 8.9 0.00019 37.2 -1.5 78 150-236 4-81 (572)
166 KOG4410 5-formyltetrahydrofola 31.4 1.1E+02 0.0025 28.3 5.4 49 150-206 331-379 (396)
167 PF07292 NID: Nmi/IFP 35 domai 31.1 31 0.00068 26.0 1.6 21 149-169 52-72 (88)
168 PF11411 DNA_ligase_IV: DNA li 30.3 33 0.0007 21.7 1.3 17 159-175 19-35 (36)
169 COG2608 CopZ Copper chaperone 23.8 2.6E+02 0.0057 19.6 5.4 46 150-204 4-49 (71)
170 KOG1134 Uncharacterized conser 22.4 1E+02 0.0022 32.0 4.0 36 195-237 306-341 (728)
171 KOG2187 tRNA uracil-5-methyltr 22.2 70 0.0015 31.8 2.6 36 196-236 65-100 (534)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.80 E-value=9.8e-19 Score=143.69 Aligned_cols=81 Identities=19% Similarity=0.432 Sum_probs=74.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+++|||+|||+++||++|+++|++||.|++|+|+.+... ++++|||||+|.+.++|++|++.||+..|++ +.
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~kGfaFV~F~~~e~A~~Al~~lng~~i~G-----r~ 105 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRET---GRSRGFGFVNFNDEGAATAAISEMDGKELNG-----RH 105 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHcCCCEECC-----EE
Confidence 579999999999999999999999999999999876532 6677799999999999999999999999999 89
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|+|+|++.+
T Consensus 106 l~V~~a~~~ 114 (144)
T PLN03134 106 IRVNPANDR 114 (144)
T ss_pred EEEEeCCcC
Confidence 999999754
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=7.6e-17 Score=148.01 Aligned_cols=83 Identities=23% Similarity=0.385 Sum_probs=75.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+.+|||+|||+++++++|+++|++||.|.+|+|+.+... |++||||||+|.+.++|.+|+++|||+.|.+ +.
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t---~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g-----r~ 340 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTT---NQCKGYGFVSMTNYDEAAMAILSLNGYTLGN-----RV 340 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCC---CCccceEEEEECCHHHHHHHHHHhCCCEECC-----eE
Confidence 457999999999999999999999999999999987522 6677899999999999999999999999999 89
Q ss_pred EEEEeecCCCC
Q 025677 229 LRLQFSRNPGP 239 (249)
Q Consensus 229 LrV~~ak~~~~ 239 (249)
|+|+|+.++..
T Consensus 341 i~V~~~~~~~~ 351 (352)
T TIGR01661 341 LQVSFKTNKAY 351 (352)
T ss_pred EEEEEccCCCC
Confidence 99999987643
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.69 E-value=6.1e-16 Score=143.74 Aligned_cols=82 Identities=28% Similarity=0.431 Sum_probs=74.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
..++|||+|||+++||++|+++|++||.|++|+|+.+... |+++|||||+|.++++|++|++.|||..|.+ +
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~t---g~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g-----r 177 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKT---GYSFGYAFVDFGSEADSQRAIKNLNGITVRN-----K 177 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CccCcEEEEEEccHHHHHHHHHHcCCCccCC-----c
Confidence 4689999999999999999999999999999999876422 5667799999999999999999999999998 8
Q ss_pred cEEEEeecCC
Q 025677 228 FLRLQFSRNP 237 (249)
Q Consensus 228 ~LrV~~ak~~ 237 (249)
+|+|+|++..
T Consensus 178 ~i~V~~a~p~ 187 (346)
T TIGR01659 178 RLKVSYARPG 187 (346)
T ss_pred eeeeeccccc
Confidence 8999998753
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.67 E-value=2.4e-16 Score=144.75 Aligned_cols=81 Identities=26% Similarity=0.479 Sum_probs=74.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||.++||++|+++|++||.|.+|+|+.++.. |+++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~---g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g-----~~ 74 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVT---GQSLGYGFVNYVRPEDAEKAVNSLNGLRLQN-----KT 74 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCC---CccceEEEEEECcHHHHHHHHhhcccEEECC-----ee
Confidence 579999999999999999999999999999999976532 6777899999999999999999999999999 88
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|+|+|++..
T Consensus 75 i~v~~a~~~ 83 (352)
T TIGR01661 75 IKVSYARPS 83 (352)
T ss_pred EEEEeeccc
Confidence 999999754
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=7.5e-16 Score=108.67 Aligned_cols=70 Identities=31% Similarity=0.547 Sum_probs=63.6
Q ss_pred EEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEE
Q 025677 152 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 230 (249)
Q Consensus 152 LfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~Lr 230 (249)
|||+|||+++|+++|+++|++||.|..+.+..+.. ++.+++|||+|.+.++|++|++.|||..+.+ +.||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~-----~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSS----GKSKGYAFVEFESEEDAEKALEELNGKKING-----RKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETT----SSEEEEEEEEESSHHHHHHHHHHHTTEEETT-----EEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccccc----ccccceEEEEEcCHHHHHHHHHHcCCCEECc-----cCcC
Confidence 79999999999999999999999999999987633 5666799999999999999999999999999 5664
No 6
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=2.2e-15 Score=131.50 Aligned_cols=82 Identities=30% Similarity=0.486 Sum_probs=75.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|-|.||+.+++|++|++||.+||.|..|.|..++.. |.+||||||+|.++++|++||+.|||+-++. -
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~T---G~~kGFAFVtF~sRddA~rAI~~LnG~gyd~-----L 259 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKET---GLSKGFAFVTFESRDDAARAIADLNGYGYDN-----L 259 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEcccc---CcccceEEEEEecHHHHHHHHHHccCcccce-----E
Confidence 4689999999999999999999999999999999976543 8888899999999999999999999999998 7
Q ss_pred cEEEEeecCC
Q 025677 228 FLRLQFSRNP 237 (249)
Q Consensus 228 ~LrV~~ak~~ 237 (249)
.|+|+|+++.
T Consensus 260 ILrvEwskP~ 269 (270)
T KOG0122|consen 260 ILRVEWSKPS 269 (270)
T ss_pred EEEEEecCCC
Confidence 8999999874
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.61 E-value=3.3e-15 Score=138.83 Aligned_cols=83 Identities=23% Similarity=0.355 Sum_probs=74.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
..+|||+|||+++||++|+++|++||.|++|+|+.++. .|++++||||+|.+.++|++|+++||+..+++.. ++
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~---tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~---~~ 266 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKL---TGTPRGVAFVRFNKREEAQEAISALNNVIPEGGS---QP 266 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCC---CCccceEEEEEECCHHHHHHHHHHhCCCccCCCc---ee
Confidence 46899999999999999999999999999999987652 2677789999999999999999999999998754 68
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|+|.|++..
T Consensus 267 l~V~~a~~~ 275 (346)
T TIGR01659 267 LTVRLAEEH 275 (346)
T ss_pred EEEEECCcc
Confidence 999999754
No 8
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=2.7e-15 Score=119.82 Aligned_cols=80 Identities=24% Similarity=0.435 Sum_probs=70.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
.++||||+||++.++||+|.+||+++|+|+.|.|--++.++ .+-|||||+|.+.++|+.|++-++|+.+++ +
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kk---tpCGFCFVeyy~~~dA~~AlryisgtrLdd-----r 106 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKK---TPCGFCFVEYYSRDDAEDALRYISGTRLDD-----R 106 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCc---CccceEEEEEecchhHHHHHHHhccCcccc-----c
Confidence 47999999999999999999999999999998777554322 234599999999999999999999999999 8
Q ss_pred cEEEEeec
Q 025677 228 FLRLQFSR 235 (249)
Q Consensus 228 ~LrV~~ak 235 (249)
+|+|+|.-
T Consensus 107 ~ir~D~D~ 114 (153)
T KOG0121|consen 107 PIRIDWDA 114 (153)
T ss_pred ceeeeccc
Confidence 99999974
No 9
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.2e-14 Score=121.46 Aligned_cols=78 Identities=27% Similarity=0.453 Sum_probs=70.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+||+.++++.||+.+|..||.|.+|.|..... | ||||||+++.+|+.|+..|||..|++ ..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP----G----fAFVEFed~RDA~DAvr~LDG~~~cG-----~r 76 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP----G----FAFVEFEDPRDAEDAVRYLDGKDICG-----SR 76 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC----C----ceEEeccCcccHHHHHhhcCCccccC-----ce
Confidence 37899999999999999999999999999999887532 4 99999999999999999999999999 78
Q ss_pred EEEEeecCCCC
Q 025677 229 LRLQFSRNPGP 239 (249)
Q Consensus 229 LrV~~ak~~~~ 239 (249)
|+|++++-...
T Consensus 77 ~rVE~S~G~~r 87 (195)
T KOG0107|consen 77 IRVELSTGRPR 87 (195)
T ss_pred EEEEeecCCcc
Confidence 99999986543
No 10
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=3.5e-14 Score=126.28 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=68.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++||++|+++|+.||.|.+|+|+.+.. + ++||||+|.++++|+.|+ .|||..|.+ +.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~----~GfAFVtF~d~eaAe~Al-lLnG~~l~g-----r~ 71 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--R----SQIAYVTFKDPQGAETAL-LLSGATIVD-----QS 71 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--C----CCEEEEEeCcHHHHHHHH-HhcCCeeCC-----ce
Confidence 47999999999999999999999999999999987642 2 249999999999999999 599999999 88
Q ss_pred EEEEeecC
Q 025677 229 LRLQFSRN 236 (249)
Q Consensus 229 LrV~~ak~ 236 (249)
|+|+++..
T Consensus 72 V~Vt~a~~ 79 (260)
T PLN03120 72 VTITPAED 79 (260)
T ss_pred EEEEeccC
Confidence 99999974
No 11
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.52 E-value=9.7e-14 Score=98.89 Aligned_cols=66 Identities=29% Similarity=0.540 Sum_probs=59.1
Q ss_pred EEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025677 152 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 221 (249)
Q Consensus 152 LfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g 221 (249)
|||+|||+++++++|+++|+.||.|..+++...+. ++++++|||+|.++++|.+|++.+++..|++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~----~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD----GQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT----SSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec----cccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 79999999999999999999999999999997653 4667799999999999999999999999998
No 12
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=8.5e-14 Score=125.94 Aligned_cols=78 Identities=22% Similarity=0.326 Sum_probs=72.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|+|+|||+...|.||+.+|.+||.|.+|.|+.++.+ +|||+||+|++.++|++|.++|+|..|+| |.
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-----SKGFGFVTmen~~dadRARa~LHgt~VEG-----Rk 165 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-----SKGFGFVTMENPADADRARAELHGTVVEG-----RK 165 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-----CCccceEEecChhhHHHHHHHhhcceeec-----eE
Confidence 478999999999999999999999999999999988743 56799999999999999999999999999 88
Q ss_pred EEEEeecC
Q 025677 229 LRLQFSRN 236 (249)
Q Consensus 229 LrV~~ak~ 236 (249)
|.|..|..
T Consensus 166 IEVn~ATa 173 (376)
T KOG0125|consen 166 IEVNNATA 173 (376)
T ss_pred EEEeccch
Confidence 99998854
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.50 E-value=8.4e-14 Score=137.09 Aligned_cols=81 Identities=15% Similarity=0.337 Sum_probs=74.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++++++|+++|++||.|++++|..+... |+++|||||+|.+.++|.+|++.||++.|.+ +.
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~t---gksKGfGFVeFe~~e~A~kAI~amNg~elgG-----r~ 275 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTG---RGHKGYGFIEYNNLQSQSEAIASMNLFDLGG-----QY 275 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCC---CCcCCeEEEEECCHHHHHHHHHHhCCCeeCC-----eE
Confidence 479999999999999999999999999999999976533 5667799999999999999999999999999 88
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|+|.++..+
T Consensus 276 LrV~kAi~p 284 (612)
T TIGR01645 276 LRVGKCVTP 284 (612)
T ss_pred EEEEecCCC
Confidence 999999864
No 14
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.50 E-value=9.3e-14 Score=132.20 Aligned_cols=80 Identities=24% Similarity=0.468 Sum_probs=73.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+.+|||+|||.++|+++|+++|++||.|..|+|+.+... |+++|||||+|.+.++|.+|++.|||..|.+ +.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~---g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g-----~~ 257 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPET---GRSKGFGFIQFHDAEEAKEALEVMNGFELAG-----RP 257 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC---CccceEEEEEECCHHHHHHHHHhcCCcEECC-----EE
Confidence 589999999999999999999999999999999876532 6777899999999999999999999999998 88
Q ss_pred EEEEeecC
Q 025677 229 LRLQFSRN 236 (249)
Q Consensus 229 LrV~~ak~ 236 (249)
|+|.|++.
T Consensus 258 i~v~~a~~ 265 (457)
T TIGR01622 258 IKVGYAQD 265 (457)
T ss_pred EEEEEccC
Confidence 99999763
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.50 E-value=7.3e-14 Score=137.53 Aligned_cols=81 Identities=20% Similarity=0.375 Sum_probs=72.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
..++|||+|||+++++++|+++|++||.|++|+|+.+... |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~T---gkskGfAFVeF~s~e~A~~Ai~~lnG~~i~G-----R 177 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPAT---GKHKGFAFVEYEVPEAAQLALEQMNGQMLGG-----R 177 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCC---CCcCCeEEEEeCcHHHHHHHHHhcCCeEEec-----c
Confidence 3578999999999999999999999999999999876432 6677899999999999999999999999999 8
Q ss_pred cEEEEeecC
Q 025677 228 FLRLQFSRN 236 (249)
Q Consensus 228 ~LrV~~ak~ 236 (249)
.|+|.+...
T Consensus 178 ~IkV~rp~~ 186 (612)
T TIGR01645 178 NIKVGRPSN 186 (612)
T ss_pred eeeeccccc
Confidence 899987654
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.50 E-value=1.4e-13 Score=132.61 Aligned_cols=81 Identities=19% Similarity=0.350 Sum_probs=73.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
..++|||+|||+.+|+++|+++|++||.|..+.|+.+.. .|+++|||||+|.+.++|+.|++.|||..|.+ +
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~-----~ 365 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIA---TGLSKGYAFCEYKDPSVTDVAIAALNGKDTGD-----N 365 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CCCcCeEEEEEECCHHHHHHHHHHcCCCEECC-----e
Confidence 457999999999999999999999999999999987642 26777899999999999999999999999999 7
Q ss_pred cEEEEeecC
Q 025677 228 FLRLQFSRN 236 (249)
Q Consensus 228 ~LrV~~ak~ 236 (249)
.|+|+++..
T Consensus 366 ~l~v~~a~~ 374 (509)
T TIGR01642 366 KLHVQRACV 374 (509)
T ss_pred EEEEEECcc
Confidence 899999864
No 17
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1.8e-13 Score=122.52 Aligned_cols=83 Identities=22% Similarity=0.379 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 147 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 147 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
++-+||||+.|+.+++|.+|+..|+.||.|+.|+||.++.. |+++|||||+|+++.+...|.+..+|.+|++
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vT---gkskGYAFIeye~erdm~~AYK~adG~~Idg----- 170 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVT---GKSKGYAFIEYEHERDMKAAYKDADGIKIDG----- 170 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeeccc---CCccceEEEEeccHHHHHHHHHhccCceecC-----
Confidence 56799999999999999999999999999999999987532 7888899999999999999999999999999
Q ss_pred ccEEEEeecCC
Q 025677 227 KFLRLQFSRNP 237 (249)
Q Consensus 227 r~LrV~~ak~~ 237 (249)
+.|-|++-+-.
T Consensus 171 rri~VDvERgR 181 (335)
T KOG0113|consen 171 RRILVDVERGR 181 (335)
T ss_pred cEEEEEecccc
Confidence 88999888654
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.49 E-value=1.1e-13 Score=135.32 Aligned_cols=78 Identities=31% Similarity=0.468 Sum_probs=71.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEE
Q 025677 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 230 (249)
Q Consensus 151 tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~Lr 230 (249)
+|||+|||+++||++|+++|++||.|.+|+|..+... ++++|||||+|.+.++|++|++.||+..|.+ +.|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t---~~s~G~afV~F~~~~~A~~Al~~ln~~~i~g-----k~i~ 73 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVT---RRSLGYGYVNFQNPADAERALETMNFKRLGG-----KPIR 73 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEECC-----eeEE
Confidence 7999999999999999999999999999999876532 5566799999999999999999999999999 8899
Q ss_pred EEeecC
Q 025677 231 LQFSRN 236 (249)
Q Consensus 231 V~~ak~ 236 (249)
|.|++.
T Consensus 74 i~~s~~ 79 (562)
T TIGR01628 74 IMWSQR 79 (562)
T ss_pred eecccc
Confidence 999864
No 19
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=8e-14 Score=117.74 Aligned_cols=77 Identities=32% Similarity=0.593 Sum_probs=69.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+++|||+|||.++.|.||++||.+||.|.+|.|..... +..||||+|+++.+|+.|+..-||+.+++ ..
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g------~ppfafVeFEd~RDAeDAiygRdGYdydg-----~r 74 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG------PPPFAFVEFEDPRDAEDAIYGRDGYDYDG-----CR 74 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC------CCCeeEEEecCccchhhhhhcccccccCc-----ce
Confidence 58999999999999999999999999999998875431 12399999999999999999999999999 67
Q ss_pred EEEEeecC
Q 025677 229 LRLQFSRN 236 (249)
Q Consensus 229 LrV~~ak~ 236 (249)
|+|+|++.
T Consensus 75 LRVEfprg 82 (241)
T KOG0105|consen 75 LRVEFPRG 82 (241)
T ss_pred EEEEeccC
Confidence 99999975
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.47 E-value=2.7e-13 Score=133.06 Aligned_cols=73 Identities=22% Similarity=0.378 Sum_probs=68.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCC--CCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPF--VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~f--G~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
.++|||+||++++|+++|+++|++| |.|++|+++. + ||||+|++.++|++|++.|||..|++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------g----fAFVeF~s~e~A~kAi~~lnG~~i~G----- 296 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------D----YAFVHFEDREDAVKAMDELNGKELEG----- 296 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------C----eEEEEeCCHHHHHHHHHHhCCCEECC-----
Confidence 5789999999999999999999999 9999987753 2 99999999999999999999999999
Q ss_pred ccEEEEeecCC
Q 025677 227 KFLRLQFSRNP 237 (249)
Q Consensus 227 r~LrV~~ak~~ 237 (249)
+.|+|+|++++
T Consensus 297 r~I~V~~Akp~ 307 (578)
T TIGR01648 297 SEIEVTLAKPV 307 (578)
T ss_pred EEEEEEEccCC
Confidence 89999999875
No 21
>smart00362 RRM_2 RNA recognition motif.
Probab=99.45 E-value=5.8e-13 Score=92.36 Aligned_cols=71 Identities=31% Similarity=0.537 Sum_probs=63.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEE
Q 025677 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 230 (249)
Q Consensus 151 tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~Lr 230 (249)
+|||+|||.++++++|+++|++||.+..+++.... +.++++|||+|.+.++|++|++.|++..+.+ +.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~-----~~i~ 70 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-----GKSKGFAFVEFESEEDAEKAIEALNGTKLGG-----RPLR 70 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CCCCceEEEEeCCHHHHHHHHHHhCCcEECC-----EEEe
Confidence 58999999999999999999999999999888665 3445699999999999999999999999988 6676
Q ss_pred E
Q 025677 231 L 231 (249)
Q Consensus 231 V 231 (249)
|
T Consensus 71 v 71 (72)
T smart00362 71 V 71 (72)
T ss_pred e
Confidence 6
No 22
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=1.6e-13 Score=119.36 Aligned_cols=78 Identities=18% Similarity=0.272 Sum_probs=65.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 229 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 229 (249)
.+||||+|+|++++++|++.|++||+|++..|+.++.. |++|||+||+|.+.+.|++|++.- .-.|++ |.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t---~rskGyGfVTf~d~~aa~rAc~dp-~piIdG-----R~a 83 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNT---GRSKGYGFVTFRDAEAATRACKDP-NPIIDG-----RKA 83 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCC---ccccceeeEEeecHHHHHHHhcCC-CCcccc-----ccc
Confidence 67999999999999999999999999999999987643 788889999999999999998643 345666 555
Q ss_pred EEEeecC
Q 025677 230 RLQFSRN 236 (249)
Q Consensus 230 rV~~ak~ 236 (249)
.+.+|..
T Consensus 84 NcnlA~l 90 (247)
T KOG0149|consen 84 NCNLASL 90 (247)
T ss_pred ccchhhh
Confidence 6655543
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.45 E-value=2.8e-13 Score=132.55 Aligned_cols=81 Identities=22% Similarity=0.356 Sum_probs=74.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
...+|||+||++++|+++|+++|++||.|++|+++.+.+ |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~----g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~g-----k 354 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEK----GVSRGFGFVCFSNPEEANRAVTEMHGRMLGG-----K 354 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCC----CCcCCeEEEEeCCHHHHHHHHHHhcCCeeCC-----c
Confidence 357899999999999999999999999999999998765 5566699999999999999999999999999 8
Q ss_pred cEEEEeecCC
Q 025677 228 FLRLQFSRNP 237 (249)
Q Consensus 228 ~LrV~~ak~~ 237 (249)
+|+|.||+.+
T Consensus 355 ~l~V~~a~~k 364 (562)
T TIGR01628 355 PLYVALAQRK 364 (562)
T ss_pred eeEEEeccCc
Confidence 8999999864
No 24
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=6e-13 Score=102.89 Aligned_cols=84 Identities=25% Similarity=0.475 Sum_probs=73.6
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeC
Q 025677 141 TLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 220 (249)
Q Consensus 141 ~~~~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~ 220 (249)
...+|+..++.|||.|||+++|.+++.++|.+||.|..|+|-..+.. +|-|||.|++..+|.+|++.|+|+.++
T Consensus 10 ~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T------rGTAFVVYedi~dAk~A~dhlsg~n~~ 83 (124)
T KOG0114|consen 10 NIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET------RGTAFVVYEDIFDAKKACDHLSGYNVD 83 (124)
T ss_pred CCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc------CceEEEEehHhhhHHHHHHHhcccccC
Confidence 44667777899999999999999999999999999999999865432 248999999999999999999999999
Q ss_pred CCCCCCccEEEEeec
Q 025677 221 EDDPDSKFLRLQFSR 235 (249)
Q Consensus 221 g~~~~~r~LrV~~ak 235 (249)
+ +.|.|-|-.
T Consensus 84 ~-----ryl~vlyyq 93 (124)
T KOG0114|consen 84 N-----RYLVVLYYQ 93 (124)
T ss_pred C-----ceEEEEecC
Confidence 9 788887654
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.44 E-value=4.5e-13 Score=127.53 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++++++|+++|++||.|.+|+|+.+... |+++|||||+|.+.++|++||. |+|..+.+ +
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~---~~skg~afVeF~~~e~A~~Al~-l~g~~~~g-----~ 158 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNS---RRSKGVAYVEFYDVESVIKALA-LTGQMLLG-----R 158 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC---CCcceEEEEEECCHHHHHHHHH-hCCCEECC-----e
Confidence 4689999999999999999999999999999999976432 6777899999999999999995 99999999 7
Q ss_pred cEEEEeecCC
Q 025677 228 FLRLQFSRNP 237 (249)
Q Consensus 228 ~LrV~~ak~~ 237 (249)
+|.|++++..
T Consensus 159 ~i~v~~~~~~ 168 (457)
T TIGR01622 159 PIIVQSSQAE 168 (457)
T ss_pred eeEEeecchh
Confidence 8999987653
No 26
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.43 E-value=6.1e-13 Score=113.52 Aligned_cols=79 Identities=33% Similarity=0.543 Sum_probs=72.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
..+|||+|||+++|+++|+++|.+||.|..+++..++. .|+++|||||+|.+.++|..|++.|++..|.+ +.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~---~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~-----~~ 186 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRE---TGKSRGFAFVEFESEESAEKAIEELNGKELEG-----RP 186 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccc---cCccCceEEEEecCHHHHHHHHHHcCCCeECC-----ce
Confidence 58999999999999999999999999999999987751 26677799999999999999999999999999 89
Q ss_pred EEEEeec
Q 025677 229 LRLQFSR 235 (249)
Q Consensus 229 LrV~~ak 235 (249)
|+|+++.
T Consensus 187 ~~v~~~~ 193 (306)
T COG0724 187 LRVQKAQ 193 (306)
T ss_pred eEeeccc
Confidence 9999975
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.43 E-value=5.9e-13 Score=130.70 Aligned_cols=79 Identities=24% Similarity=0.350 Sum_probs=69.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
..++|||+|||++++|++|+++|++||.|.+|+|+.+.+ |+++|||||+|.+.++|++||+.||++.|... +
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~s----G~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~G----r 128 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFS----GQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPG----R 128 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCC----CCccceEEEEeCCHHHHHHHHHHcCCCeecCC----c
Confidence 358999999999999999999999999999999998765 55667999999999999999999999999642 4
Q ss_pred cEEEEee
Q 025677 228 FLRLQFS 234 (249)
Q Consensus 228 ~LrV~~a 234 (249)
.|.|.++
T Consensus 129 ~l~V~~S 135 (578)
T TIGR01648 129 LLGVCIS 135 (578)
T ss_pred ccccccc
Confidence 5666655
No 28
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.42 E-value=8.4e-13 Score=116.06 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=66.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
..||||+||++.+||++|+++|+.||.|.+|+|+.+. ++++||||+|.++++|+.|+ .|+|..|.+ ++
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~------et~gfAfVtF~d~~aaetAl-lLnGa~l~d-----~~ 72 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG------EYACTAYVTFKDAYALETAV-LLSGATIVD-----QR 72 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC------CcceEEEEEECCHHHHHHHH-hcCCCeeCC-----ce
Confidence 4799999999999999999999999999999999763 23359999999999999999 799999999 66
Q ss_pred EEEEeec
Q 025677 229 LRLQFSR 235 (249)
Q Consensus 229 LrV~~ak 235 (249)
|.|.-..
T Consensus 73 I~It~~~ 79 (243)
T PLN03121 73 VCITRWG 79 (243)
T ss_pred EEEEeCc
Confidence 7776543
No 29
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.42 E-value=4.4e-13 Score=114.91 Aligned_cols=81 Identities=22% Similarity=0.335 Sum_probs=73.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
-.+|-|-||.+.++.++|+.+|++||.|-+|.|..+.-. .+++|||||-|.+..+|+.|+++|+|.++++ +.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~T---r~sRgFaFVrf~~k~daedA~damDG~~ldg-----Re 84 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYT---RQSRGFAFVRFHDKRDAEDALDAMDGAVLDG-----RE 84 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceeccccccc---ccccceeEEEeeecchHHHHHHhhcceeecc-----ce
Confidence 468999999999999999999999999999999866422 4566799999999999999999999999999 88
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|+|++|+.-
T Consensus 85 lrVq~aryg 93 (256)
T KOG4207|consen 85 LRVQMARYG 93 (256)
T ss_pred eeehhhhcC
Confidence 999999863
No 30
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.41 E-value=8.7e-13 Score=127.38 Aligned_cols=76 Identities=17% Similarity=0.249 Sum_probs=68.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHH--cCceeCCCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL--QGYRMDEDDPD 225 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~L--nG~~i~g~~~~ 225 (249)
++++|||+|||+++||++|+++|++||.|.+|+|+.++ | ||||+|++.++|++|++.| ++..|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k-----~----~afVef~~~e~A~~Ai~~~~~~~~~l~g---- 67 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK-----R----QALVEFEDEESAKACVNFATSVPIYIRG---- 67 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC-----C----EEEEEeCchHHHHHHHHHhhcCCceEcC----
Confidence 36899999999999999999999999999999988542 3 9999999999999999875 7788998
Q ss_pred CccEEEEeecCC
Q 025677 226 SKFLRLQFSRNP 237 (249)
Q Consensus 226 ~r~LrV~~ak~~ 237 (249)
++|+|+|++.+
T Consensus 68 -~~l~v~~s~~~ 78 (481)
T TIGR01649 68 -QPAFFNYSTSQ 78 (481)
T ss_pred -eEEEEEecCCc
Confidence 89999999754
No 31
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.41 E-value=1.1e-12 Score=126.75 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 148 ASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 148 ~~~tLfVgnLp~-~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
++++|||+|||+ .+|+++|+++|++||.|.+|+++.++. |||||+|.+.++|++|++.|||..|.+
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~--------g~afV~f~~~~~A~~Ai~~lng~~l~g----- 340 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKK--------ETALIEMADPYQAQLALTHLNGVKLFG----- 340 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC--------CEEEEEECCHHHHHHHHHHhCCCEECC-----
Confidence 468999999998 699999999999999999999987531 399999999999999999999999999
Q ss_pred ccEEEEeecCC
Q 025677 227 KFLRLQFSRNP 237 (249)
Q Consensus 227 r~LrV~~ak~~ 237 (249)
++|+|++++..
T Consensus 341 ~~l~v~~s~~~ 351 (481)
T TIGR01649 341 KPLRVCPSKQQ 351 (481)
T ss_pred ceEEEEEcccc
Confidence 88999999764
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.1e-12 Score=116.22 Aligned_cols=75 Identities=24% Similarity=0.479 Sum_probs=70.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+++|||||++.-+||++|++.|++||.|.+||+.+++ | |+||.|++.|+|..||..||+..|.+ ..
T Consensus 164 NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q-----G----YaFVrF~tkEaAahAIv~mNntei~G-----~~ 229 (321)
T KOG0148|consen 164 NTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ-----G----YAFVRFETKEAAAHAIVQMNNTEIGG-----QL 229 (321)
T ss_pred CceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc-----c----eEEEEecchhhHHHHHHHhcCceeCc-----eE
Confidence 5899999999999999999999999999999999875 4 99999999999999999999999999 78
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
+|+.|.|..
T Consensus 230 VkCsWGKe~ 238 (321)
T KOG0148|consen 230 VRCSWGKEG 238 (321)
T ss_pred EEEeccccC
Confidence 999999864
No 33
>smart00360 RRM RNA recognition motif.
Probab=99.39 E-value=1.7e-12 Score=89.52 Aligned_cols=71 Identities=35% Similarity=0.542 Sum_probs=62.0
Q ss_pred EcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEE
Q 025677 154 VEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQ 232 (249)
Q Consensus 154 VgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~LrV~ 232 (249)
|+|||+++++++|+++|++||.|..+.+..... .++++++|||+|.+.++|+.|++.|++..+.+ +.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~---~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~-----~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKD---TGKSKGFAFVEFESEEDAEKALEALNGKELDG-----RPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCC---CCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC-----cEEEeC
Confidence 679999999999999999999999999886543 24566799999999999999999999999987 667763
No 34
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=3.6e-13 Score=125.56 Aligned_cols=87 Identities=23% Similarity=0.295 Sum_probs=76.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+-|+..|||.|++++|++||.|++|.|..+..+ .++|||||.|.+++.|..|+++|||..-..++. .+
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~----~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs--~P 197 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDG----LSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCS--QP 197 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccc----cccceeEEEEehHHHHHHHHHhhccceeeccCC--Cc
Confidence 478999999999999999999999999999999988764 455599999999999999999999987666554 79
Q ss_pred EEEEeecCCCCCC
Q 025677 229 LRLQFSRNPGPRS 241 (249)
Q Consensus 229 LrV~~ak~~~~r~ 241 (249)
|.|.||...+.|.
T Consensus 198 LVVkFADtqkdk~ 210 (510)
T KOG0144|consen 198 LVVKFADTQKDKD 210 (510)
T ss_pred eEEEecccCCCch
Confidence 9999998876654
No 35
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.39 E-value=4e-12 Score=88.53 Aligned_cols=74 Identities=34% Similarity=0.564 Sum_probs=65.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEE
Q 025677 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 230 (249)
Q Consensus 151 tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~Lr 230 (249)
+|+|+|||+++++++|+++|+.||.|..+.+...... +++++|||+|.+.++|..|++.+++..+.+ +.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~----~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~-----~~~~ 71 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT----KSKGFAFVEFEDEEDAEKALEALNGKELGG-----RPLR 71 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC----CcceEEEEEECCHHHHHHHHHHhCCCeECC-----eEEE
Confidence 4899999999999999999999999999999876543 344599999999999999999999999988 7788
Q ss_pred EEe
Q 025677 231 LQF 233 (249)
Q Consensus 231 V~~ 233 (249)
|+|
T Consensus 72 v~~ 74 (74)
T cd00590 72 VEF 74 (74)
T ss_pred EeC
Confidence 875
No 36
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=1.2e-12 Score=105.59 Aligned_cols=83 Identities=19% Similarity=0.341 Sum_probs=74.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
...|||.++..++||++|.+.|..||+|+.+.|.-++. .|-.||||+|+|++.++|++|+.+|||..+.+ ..
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRR---tGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~-----q~ 143 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRR---TGYVKGYALVEYETLKEAQAAIDALNGAELLG-----QN 143 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccc---cccccceeeeehHhHHHHHHHHHhccchhhhC-----Cc
Confidence 47899999999999999999999999999999986642 37788899999999999999999999999999 67
Q ss_pred EEEEeecCCCC
Q 025677 229 LRLQFSRNPGP 239 (249)
Q Consensus 229 LrV~~ak~~~~ 239 (249)
|.|+|+-..++
T Consensus 144 v~VDw~Fv~gp 154 (170)
T KOG0130|consen 144 VSVDWCFVKGP 154 (170)
T ss_pred eeEEEEEecCC
Confidence 99999966554
No 37
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1e-12 Score=116.44 Aligned_cols=82 Identities=17% Similarity=0.339 Sum_probs=75.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+-.+||+.|..+++.++|++.|.+||+|.+++|+.+... +|+|||+||.|-++++|+.||+.|||.-|.. |.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T---~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~-----R~ 133 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNT---GKSKGYGFVSFPNKEDAENAIQQMNGQWLGR-----RT 133 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccC---CcccceeEEeccchHHHHHHHHHhCCeeecc-----ce
Confidence 456999999999999999999999999999999987643 7888999999999999999999999999998 89
Q ss_pred EEEEeecCCC
Q 025677 229 LRLQFSRNPG 238 (249)
Q Consensus 229 LrV~~ak~~~ 238 (249)
||-.||..+.
T Consensus 134 IRTNWATRKp 143 (321)
T KOG0148|consen 134 IRTNWATRKP 143 (321)
T ss_pred eeccccccCc
Confidence 9999997654
No 38
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=8.4e-14 Score=117.19 Aligned_cols=81 Identities=20% Similarity=0.429 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++.-|||||||++.||.||..+|++||+|++|.|+.++.. |++|||||+.|++..+...|+..|||.+|.+ |
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~T---GKSKGFaFLcYEDQRSTILAVDN~NGiki~g-----R 105 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKT---GKSKGFAFLCYEDQRSTILAVDNLNGIKILG-----R 105 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCC---CcccceEEEEecCccceEEEEeccCCceecc-----e
Confidence 3678999999999999999999999999999999987643 8999999999999999999999999999999 9
Q ss_pred cEEEEeecC
Q 025677 228 FLRLQFSRN 236 (249)
Q Consensus 228 ~LrV~~ak~ 236 (249)
.|+|+...+
T Consensus 106 tirVDHv~~ 114 (219)
T KOG0126|consen 106 TIRVDHVSN 114 (219)
T ss_pred eEEeeeccc
Confidence 999987654
No 39
>PLN03213 repressor of silencing 3; Provisional
Probab=99.37 E-value=1.8e-12 Score=122.75 Aligned_cols=76 Identities=22% Similarity=0.382 Sum_probs=68.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCH--HHHHHHHHHHcCceeCCCCCCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP--ACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~--~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
..+||||||++++|+++|+.+|++||.|.+|.|+ .++ | +|||||+|.+. .++.+|+..|||..++|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp-RET----G--RGFAFVEMssdddaEeeKAISaLNGAEWKG----- 77 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV-RTK----G--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKG----- 77 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe-ccc----C--CceEEEEecCCcHHHHHHHHHHhcCCeecC-----
Confidence 3689999999999999999999999999999999 333 3 56999999987 78999999999999999
Q ss_pred ccEEEEeecC
Q 025677 227 KFLRLQFSRN 236 (249)
Q Consensus 227 r~LrV~~ak~ 236 (249)
+.|+|+-|+.
T Consensus 78 R~LKVNKAKP 87 (759)
T PLN03213 78 GRLRLEKAKE 87 (759)
T ss_pred ceeEEeeccH
Confidence 8899999875
No 40
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=1.8e-12 Score=114.48 Aligned_cols=81 Identities=26% Similarity=0.474 Sum_probs=75.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
...|.|.-||.++|++||+.+|...|+|.+|+++.++.. |++.||+||.|-++++|++|++.|||-.+.. +.
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKit---GqSLGYGFVNYv~p~DAe~AintlNGLrLQ~-----KT 112 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKIT---GQSLGYGFVNYVRPKDAEKAINTLNGLRLQN-----KT 112 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeecccc---ccccccceeeecChHHHHHHHhhhcceeecc-----ce
Confidence 356999999999999999999999999999999987643 8899999999999999999999999999998 89
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|+|+||++.
T Consensus 113 IKVSyARPS 121 (360)
T KOG0145|consen 113 IKVSYARPS 121 (360)
T ss_pred EEEEeccCC
Confidence 999999975
No 41
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=5e-13 Score=115.58 Aligned_cols=88 Identities=22% Similarity=0.366 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 147 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 147 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
+..+|||||+|..++||.-|...|=+||.|+.|.+.-+... .|.+||+||+|+..++|.+||..||+..+.+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyes---qkHRgFgFVefe~aEDAaaAiDNMnesEL~G----- 79 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYES---QKHRGFGFVEFEEAEDAAAAIDNMNESELFG----- 79 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhc---ccccceeEEEeeccchhHHHhhcCchhhhcc-----
Confidence 44689999999999999999999999999999999865322 3445599999999999999999999999999
Q ss_pred ccEEEEeecCCCCCCC
Q 025677 227 KFLRLQFSRNPGPRSV 242 (249)
Q Consensus 227 r~LrV~~ak~~~~r~g 242 (249)
|.|+|.||++...+.+
T Consensus 80 rtirVN~AkP~kikeg 95 (298)
T KOG0111|consen 80 RTIRVNLAKPEKIKEG 95 (298)
T ss_pred eeEEEeecCCccccCC
Confidence 9999999999865543
No 42
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=2.5e-12 Score=120.03 Aligned_cols=88 Identities=18% Similarity=0.374 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.-+|||+-+|..++|+||+++|++||.|.+|.|++++.. |.++|||||.|.+.++|.+|+.+|++.+...+-. .
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t---~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~--~ 107 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKST---GQSKGCCFVKYYTRKEADEAINALHNQKTLPGMH--H 107 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeeccccc---CcccceEEEEeccHHHHHHHHHHhhcccccCCCC--c
Confidence 3467999999999999999999999999999999987643 7888899999999999999999998876544322 6
Q ss_pred cEEEEeecCCCCC
Q 025677 228 FLRLQFSRNPGPR 240 (249)
Q Consensus 228 ~LrV~~ak~~~~r 240 (249)
+|+|.||.....|
T Consensus 108 pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 108 PVQVKYADGERER 120 (510)
T ss_pred ceeecccchhhhc
Confidence 8999999765443
No 43
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.35 E-value=1.7e-12 Score=123.51 Aligned_cols=82 Identities=23% Similarity=0.436 Sum_probs=76.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 229 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 229 (249)
+.+||||+|++++|++|.++|+..|.|.+++++.+..+ |+++||+|++|.+.++|+.|++.|||+++.+ +.|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~t---G~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g-----r~l 90 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRET---GKPKGFGFCEFTDEETAERAIRNLNGAEFNG-----RKL 90 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccC---CCcCceeeEecCchhhHHHHHHhcCCcccCC-----ceE
Confidence 78999999999999999999999999999999987644 8888899999999999999999999999999 899
Q ss_pred EEEeecCCCC
Q 025677 230 RLQFSRNPGP 239 (249)
Q Consensus 230 rV~~ak~~~~ 239 (249)
+|.|+.....
T Consensus 91 ~v~~~~~~~~ 100 (435)
T KOG0108|consen 91 RVNYASNRKN 100 (435)
T ss_pred Eeecccccch
Confidence 9999987644
No 44
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=5.8e-12 Score=111.36 Aligned_cols=81 Identities=25% Similarity=0.425 Sum_probs=74.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
..-|||-||.++++|.-|+++|.+||.|..|+++.+-+. .|||||+||++.+.++|..|+..|||+.+.+ |.
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~tt---nkCKGfgFVtMtNYdEAamAi~sLNGy~lg~-----rv 349 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTT---NKCKGFGFVTMTNYDEAAMAIASLNGYRLGD-----RV 349 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCc---ccccceeEEEecchHHHHHHHHHhcCccccc-----eE
Confidence 467999999999999999999999999999999987654 6889999999999999999999999999999 89
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|.|+|..++
T Consensus 350 LQVsFKtnk 358 (360)
T KOG0145|consen 350 LQVSFKTNK 358 (360)
T ss_pred EEEEEecCC
Confidence 999997654
No 45
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=1.3e-11 Score=115.63 Aligned_cols=81 Identities=25% Similarity=0.371 Sum_probs=72.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.+-||||.||.++.|+||..+|++.|.|-++||+.+... |+++|||||+|.+.+.|++|++.||++.|... +.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~s---G~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~G----K~ 155 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFS---GDNRGYAFVTFCTKEEAQEAIKELNNYEIRPG----KL 155 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccC---CCCcceEEEEeecHHHHHHHHHHhhCccccCC----CE
Confidence 578999999999999999999999999999999977422 77778999999999999999999999999864 67
Q ss_pred EEEEeecC
Q 025677 229 LRLQFSRN 236 (249)
Q Consensus 229 LrV~~ak~ 236 (249)
|.|+.+-.
T Consensus 156 igvc~Sva 163 (506)
T KOG0117|consen 156 LGVCVSVA 163 (506)
T ss_pred eEEEEeee
Confidence 88887754
No 46
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.29 E-value=6.9e-12 Score=108.60 Aligned_cols=78 Identities=27% Similarity=0.419 Sum_probs=69.1
Q ss_pred CcEEEEcCCCCCCCHHHHHH----HhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025677 149 SSTLYVEGLPADSTKREVAH----IFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 224 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~----lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 224 (249)
+.||||.||+..+..++|+. +|++||.|.+|..... .+.+|.|||.|.+.+.|..|+.+|+|+.+.+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt------~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg--- 79 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT------PKMRGQAFVVFKETEAASAALRALQGFPFYG--- 79 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC------CCccCceEEEecChhHHHHHHHHhcCCcccC---
Confidence 45999999999999999888 9999999998876643 2333499999999999999999999999999
Q ss_pred CCccEEEEeecCC
Q 025677 225 DSKFLRLQFSRNP 237 (249)
Q Consensus 225 ~~r~LrV~~ak~~ 237 (249)
++|+|+||+++
T Consensus 80 --K~mriqyA~s~ 90 (221)
T KOG4206|consen 80 --KPMRIQYAKSD 90 (221)
T ss_pred --chhheecccCc
Confidence 89999999876
No 47
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.29 E-value=4.8e-12 Score=106.58 Aligned_cols=81 Identities=15% Similarity=0.170 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 147 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 147 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
+...||||+||+..++++.|+++|-+.|.|.++++..++-. .+.+|||||+|.++++|+-|++.||..++.+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~---~~~qGygF~Ef~~eedadYAikiln~VkLYg----- 78 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVT---QKHQGYGFAEFRTEEDADYAIKILNMVKLYG----- 78 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhc---ccccceeEEEEechhhhHHHHHHHHHHHhcC-----
Confidence 34589999999999999999999999999999999976533 3455699999999999999999999999999
Q ss_pred ccEEEEeec
Q 025677 227 KFLRLQFSR 235 (249)
Q Consensus 227 r~LrV~~ak 235 (249)
++|+|.-+.
T Consensus 79 rpIrv~kas 87 (203)
T KOG0131|consen 79 RPIRVNKAS 87 (203)
T ss_pred ceeEEEecc
Confidence 899998886
No 48
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=6e-12 Score=117.87 Aligned_cols=73 Identities=21% Similarity=0.349 Sum_probs=68.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.+.|||.||+.++|||.|+++|++||.|..|+.+.+ ||||.|.++++|.+||+.|||+.|++ ..
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-----------YaFVHf~eR~davkAm~~~ngkeldG-----~~ 322 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-----------YAFVHFAEREDAVKAMKETNGKELDG-----SP 322 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-----------eeEEeecchHHHHHHHHHhcCceecC-----ce
Confidence 578999999999999999999999999999887754 99999999999999999999999999 67
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|.|.+||++
T Consensus 323 iEvtLAKP~ 331 (506)
T KOG0117|consen 323 IEVTLAKPV 331 (506)
T ss_pred EEEEecCCh
Confidence 999999986
No 49
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.27 E-value=3e-11 Score=82.97 Aligned_cols=56 Identities=23% Similarity=0.511 Sum_probs=50.1
Q ss_pred HHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEee
Q 025677 166 VAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFS 234 (249)
Q Consensus 166 L~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~LrV~~a 234 (249)
|.++|++||.|+++.+..+. ++ +|||+|.+.++|++|++.|||..+.+ ++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~----~a~V~f~~~~~A~~a~~~l~~~~~~g-----~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RG----FAFVEFASVEDAQKAIEQLNGRQFNG-----RPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TT----EEEEEESSHHHHHHHHHHHTTSEETT-----EEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CC----EEEEEECCHHHHHHHHHHhCCCEECC-----cEEEEEEC
Confidence 68899999999999998665 13 99999999999999999999999999 89999997
No 50
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.27 E-value=4.7e-12 Score=113.23 Aligned_cols=72 Identities=24% Similarity=0.468 Sum_probs=68.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 229 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 229 (249)
.+|||+|||.++++.+|+.+|++||.|.+|.|+++ |+||..++...|+.|+..|+|++|.+ ..|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-----------YgFVHiEdktaaedairNLhgYtLhg-----~nI 66 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-----------YGFVHIEDKTAAEDAIRNLHGYTLHG-----VNI 66 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-----------cceEEeecccccHHHHhhcccceecc-----eEE
Confidence 47999999999999999999999999999999976 89999999999999999999999999 779
Q ss_pred EEEeecCC
Q 025677 230 RLQFSRNP 237 (249)
Q Consensus 230 rV~~ak~~ 237 (249)
+|+=+|++
T Consensus 67 nVeaSksK 74 (346)
T KOG0109|consen 67 NVEASKSK 74 (346)
T ss_pred EEEecccc
Confidence 99999886
No 51
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.3e-11 Score=112.93 Aligned_cols=80 Identities=23% Similarity=0.418 Sum_probs=74.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.+.|||..|++-+|+++|.-||+.||.|++|.|+.+... |.+..||||+|++.+++++|.-+|++..|++ +.
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~kt---gdsLqyaFiEFen~escE~AyFKMdNvLIDD-----rR 310 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKT---GDSLQYAFIEFENKESCEQAYFKMDNVLIDD-----RR 310 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecccc---cchhheeeeeecchhhHHHHHhhhcceeecc-----ce
Confidence 389999999999999999999999999999999976532 8888899999999999999999999999999 89
Q ss_pred EEEEeecC
Q 025677 229 LRLQFSRN 236 (249)
Q Consensus 229 LrV~~ak~ 236 (249)
|.|.|+.+
T Consensus 311 IHVDFSQS 318 (479)
T KOG0415|consen 311 IHVDFSQS 318 (479)
T ss_pred EEeehhhh
Confidence 99999875
No 52
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=2e-11 Score=108.27 Aligned_cols=83 Identities=25% Similarity=0.512 Sum_probs=75.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.+.|||-.||.+..+.||..+|-+||.|++.++..++.. .++|.|+||.|+++.+|+.||.+|||+.|.- +
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRAT---NQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM-----K 355 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRAT---NQSKCFGFVSFDNPASAQAAIQAMNGFQIGM-----K 355 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhcc---ccccceeeEecCCchhHHHHHHHhcchhhhh-----h
Confidence 4688999999999999999999999999999999877644 6788899999999999999999999999999 8
Q ss_pred cEEEEeecCCC
Q 025677 228 FLRLQFSRNPG 238 (249)
Q Consensus 228 ~LrV~~ak~~~ 238 (249)
.|||+..+++.
T Consensus 356 RLKVQLKRPkd 366 (371)
T KOG0146|consen 356 RLKVQLKRPKD 366 (371)
T ss_pred hhhhhhcCccc
Confidence 89999988763
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=4.5e-11 Score=114.39 Aligned_cols=80 Identities=21% Similarity=0.363 Sum_probs=72.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
...|.|.||||.|.+.+|+.+|++||.|.+|.|..+.. |+..|||||.|.+..+|+.|++.+|+.+|++ |+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d----gklcGFaFV~fk~~~dA~~Al~~~N~~~i~g-----R~ 187 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD----GKLCGFAFVQFKEKKDAEKALEFFNGNKIDG-----RP 187 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC----CCccceEEEEEeeHHHHHHHHHhccCceecC-----ce
Confidence 57899999999999999999999999999999986554 4444799999999999999999999999999 99
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|-|+||-.+
T Consensus 188 VAVDWAV~K 196 (678)
T KOG0127|consen 188 VAVDWAVDK 196 (678)
T ss_pred eEEeeeccc
Confidence 999999653
No 54
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.17 E-value=5.6e-11 Score=117.38 Aligned_cols=80 Identities=26% Similarity=0.529 Sum_probs=74.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
-++|||||.|+.+++|+||.++|+.||+|.+|.++..+ | ||||.+....+|++|+.+|+.+++.. +
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R-----~----cAfI~M~~RqdA~kalqkl~n~kv~~-----k 485 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR-----G----CAFIKMVRRQDAEKALQKLSNVKVAD-----K 485 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC-----c----eeEEEEeehhHHHHHHHHHhcccccc-----e
Confidence 46899999999999999999999999999999998765 3 99999999999999999999999998 8
Q ss_pred cEEEEeecCCCCCC
Q 025677 228 FLRLQFSRNPGPRS 241 (249)
Q Consensus 228 ~LrV~~ak~~~~r~ 241 (249)
.|+|.|+..++.+.
T Consensus 486 ~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 486 TIKIAWAVGKGPKS 499 (894)
T ss_pred eeEEeeeccCCcch
Confidence 89999999988876
No 55
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.16 E-value=3.2e-10 Score=98.50 Aligned_cols=87 Identities=31% Similarity=0.529 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeC-CCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025677 146 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK-ESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 224 (249)
Q Consensus 146 ~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~-~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 224 (249)
+...+||||.+||.++...||..+|..|-+...+.|... +.+ --++-+|||+|.+...|..|+++|||..|+-.+.
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~---~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~ 107 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGD---QVCKPVAFATFTSHQFALAAMNALNGVRFDPETG 107 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCC---ccccceEEEEecchHHHHHHHHHhcCeeeccccC
Confidence 345799999999999999999999999999887766532 211 1255699999999999999999999999998765
Q ss_pred CCccEEEEeecCC
Q 025677 225 DSKFLRLQFSRNP 237 (249)
Q Consensus 225 ~~r~LrV~~ak~~ 237 (249)
..|+|++||+.
T Consensus 108 --stLhiElAKSN 118 (284)
T KOG1457|consen 108 --STLHIELAKSN 118 (284)
T ss_pred --ceeEeeehhcC
Confidence 78999999975
No 56
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=9.9e-11 Score=103.96 Aligned_cols=86 Identities=24% Similarity=0.385 Sum_probs=75.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++||||-|...-.|||++.+|..||.|.+|.+..... |.+||||||.|.+..+|..||++|+|......-. ..
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d----g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGAS--SS 92 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD----GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGAS--SS 92 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC----CCCCCceEEEeccchHHHHHHHHhcccccCCCCc--cc
Confidence 47899999999999999999999999999999987655 5667799999999999999999999987766543 67
Q ss_pred EEEEeecCCCCC
Q 025677 229 LRLQFSRNPGPR 240 (249)
Q Consensus 229 LrV~~ak~~~~r 240 (249)
|.|.|+...+.|
T Consensus 93 LVVK~ADTdkER 104 (371)
T KOG0146|consen 93 LVVKFADTDKER 104 (371)
T ss_pred eEEEeccchHHH
Confidence 999999876544
No 57
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=1.2e-10 Score=111.43 Aligned_cols=79 Identities=25% Similarity=0.428 Sum_probs=67.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHH-----cC-ceeCCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL-----QG-YRMDED 222 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~L-----nG-~~i~g~ 222 (249)
..||||.|||+++||++|.++|++||.|..+.|+..... |.++|+|||.|.+..+|.+||++- .| +.+++
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T---~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G- 367 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDT---GHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG- 367 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCC---CCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec-
Confidence 489999999999999999999999999999998865422 556669999999999999999876 34 67777
Q ss_pred CCCCccEEEEeec
Q 025677 223 DPDSKFLRLQFSR 235 (249)
Q Consensus 223 ~~~~r~LrV~~ak 235 (249)
|.|+|..|-
T Consensus 368 ----R~Lkv~~Av 376 (678)
T KOG0127|consen 368 ----RLLKVTLAV 376 (678)
T ss_pred ----cEEeeeecc
Confidence 889998874
No 58
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=1.3e-10 Score=106.88 Aligned_cols=78 Identities=19% Similarity=0.382 Sum_probs=70.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 229 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 229 (249)
+++|||.+.+++.|+.|+..|.+||.|++|.+..+... ++.||||||+|+-++.|..|++.|||..+.+ |.|
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T---~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGG-----RNi 185 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPAT---GKHKGFAFVEYEVPEAAQLALEQMNGQMLGG-----RNI 185 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeeccccccc---ccccceEEEEEeCcHHHHHHHHHhccccccC-----ccc
Confidence 67999999999999999999999999999999977543 7778899999999999999999999999999 778
Q ss_pred EEEeec
Q 025677 230 RLQFSR 235 (249)
Q Consensus 230 rV~~ak 235 (249)
+|....
T Consensus 186 KVgrPs 191 (544)
T KOG0124|consen 186 KVGRPS 191 (544)
T ss_pred cccCCC
Confidence 887543
No 59
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.05 E-value=1.8e-10 Score=103.25 Aligned_cols=74 Identities=24% Similarity=0.347 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
.+.+|+|+||.+.|+.+||+..|++||.+.+++|+++ |+||.|+-.++|..|++.||+..|.+ +
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-----------y~fvh~d~~eda~~air~l~~~~~~g-----k 140 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-----------YAFVHFDRAEDAVEAIRGLDNTEFQG-----K 140 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeecc-----------eeEEEEeeccchHHHHhccccccccc-----c
Confidence 4678999999999999999999999999999999876 89999999999999999999999999 8
Q ss_pred cEEEEeecCC
Q 025677 228 FLRLQFSRNP 237 (249)
Q Consensus 228 ~LrV~~ak~~ 237 (249)
+|+|+.+.+.
T Consensus 141 ~m~vq~stsr 150 (346)
T KOG0109|consen 141 RMHVQLSTSR 150 (346)
T ss_pred eeeeeeeccc
Confidence 8999999764
No 60
>smart00361 RRM_1 RNA recognition motif.
Probab=99.05 E-value=7.6e-10 Score=79.66 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=50.7
Q ss_pred HHHHHHHhc----CCCCeEEEE-Eee-CCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEE
Q 025677 163 KREVAHIFR----PFVGYKEVR-LVI-KESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRL 231 (249)
Q Consensus 163 eeeL~~lF~----~fG~i~~v~-l~~-~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~LrV 231 (249)
+++|+++|+ +||.|.+|. ++. +.+ ..+.++|||||+|.+.++|.+|++.|||..+.+ +.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~--~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g-----r~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVG--YENHKRGNVYITFERSEDAARAIVDLNGRYFDG-----RTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCC--CCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC-----EEEEe
Confidence 578888898 999999995 443 332 114566799999999999999999999999999 77775
No 61
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.03 E-value=3e-10 Score=108.79 Aligned_cols=76 Identities=26% Similarity=0.448 Sum_probs=69.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCC-CccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025677 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE-SKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 229 (249)
Q Consensus 151 tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~-~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 229 (249)
.|||+||.+++++++|+.+|++||.|..|.+..+. + |.+|||+||+|.+.++|.+|+++|||..|-| +.|
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~t----G~skgfGfi~f~~~~~ar~a~e~lngfelAG-----r~i 350 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSET----GRSKGFGFITFVNKEDARKALEQLNGFELAG-----RLI 350 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeecccccc----ccccCcceEEEecHHHHHHHHHHhccceecC-----ceE
Confidence 39999999999999999999999999999888764 4 7788899999999999999999999999998 889
Q ss_pred EEEeec
Q 025677 230 RLQFSR 235 (249)
Q Consensus 230 rV~~ak 235 (249)
+|....
T Consensus 351 kV~~v~ 356 (549)
T KOG0147|consen 351 KVSVVT 356 (549)
T ss_pred EEEEee
Confidence 987764
No 62
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.03 E-value=1.2e-09 Score=102.51 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=65.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||.|||+++|++.|++-|..||.++.+.|+.. |++|| .|.|.++++|+.|+..|||.++++ +.
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~------GkskG--VVrF~s~edAEra~a~Mngs~l~G-----r~ 602 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN------GKSKG--VVRFFSPEDAERACALMNGSRLDG-----RN 602 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhhcc------CCccc--eEEecCHHHHHHHHHHhccCcccC-----ce
Confidence 478999999999999999999999999999888543 55555 899999999999999999999999 88
Q ss_pred EEEEee
Q 025677 229 LRLQFS 234 (249)
Q Consensus 229 LrV~~a 234 (249)
|+|.|.
T Consensus 603 I~V~y~ 608 (608)
T KOG4212|consen 603 IKVTYF 608 (608)
T ss_pred eeeeeC
Confidence 999874
No 63
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.03 E-value=8.5e-10 Score=106.35 Aligned_cols=84 Identities=10% Similarity=0.201 Sum_probs=68.2
Q ss_pred CCcEEEEcCCCCC--C--------CHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCc
Q 025677 148 ASSTLYVEGLPAD--S--------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 217 (249)
Q Consensus 148 ~~~tLfVgnLp~~--~--------teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~ 217 (249)
++++|+|.||... + ..++|+++|++||.|++|+|+........+..+|++||+|.+.++|++|+++|||.
T Consensus 408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 4689999999642 1 23679999999999999999865333233455679999999999999999999999
Q ss_pred eeCCCCCCCccEEEEeecC
Q 025677 218 RMDEDDPDSKFLRLQFSRN 236 (249)
Q Consensus 218 ~i~g~~~~~r~LrV~~ak~ 236 (249)
.|.+ +.|.|.|...
T Consensus 488 ~~~g-----r~v~~~~~~~ 501 (509)
T TIGR01642 488 KFND-----RVVVAAFYGE 501 (509)
T ss_pred EECC-----eEEEEEEeCH
Confidence 9999 8899999753
No 64
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.03 E-value=6.5e-10 Score=104.27 Aligned_cols=77 Identities=21% Similarity=0.376 Sum_probs=69.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhc-CCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 150 STLYVEGLPADSTKREVAHIFR-PFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~-~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+.+||.|||+++.+++|++||. +.|+|..|.|+.+++ ||++|||.|||+++|.+++|++.||-+.+.+ |+
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~----GK~rGcavVEFk~~E~~qKa~E~lnk~~~~G-----R~ 115 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES----GKARGCAVVEFKDPENVQKALEKLNKYEVNG-----RE 115 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC----CCcCCceEEEeeCHHHHHHHHHHhhhccccC-----ce
Confidence 5699999999999999999997 578999999998887 5566699999999999999999999999999 88
Q ss_pred EEEEeec
Q 025677 229 LRLQFSR 235 (249)
Q Consensus 229 LrV~~ak 235 (249)
|+|.-..
T Consensus 116 l~vKEd~ 122 (608)
T KOG4212|consen 116 LVVKEDH 122 (608)
T ss_pred EEEeccC
Confidence 9986543
No 65
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=1.1e-09 Score=100.19 Aligned_cols=75 Identities=20% Similarity=0.402 Sum_probs=66.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHH-cCceeCCCCCCCc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL-QGYRMDEDDPDSK 227 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~L-nG~~i~g~~~~~r 227 (249)
..||||++|...++|.+|+++|.+||+|+.++++..+ + ||||+|.+.+.|+.|.+++ |-..|++ +
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~-----~----CAFv~ftTR~aAE~Aae~~~n~lvI~G-----~ 293 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK-----G----CAFVTFTTREAAEKAAEKSFNKLVING-----F 293 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc-----c----cceeeehhhHHHHHHHHhhcceeeecc-----e
Confidence 4789999999999999999999999999999998765 2 9999999999999998765 5555666 7
Q ss_pred cEEEEeecCC
Q 025677 228 FLRLQFSRNP 237 (249)
Q Consensus 228 ~LrV~~ak~~ 237 (249)
.|+|.|++..
T Consensus 294 Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 294 RLKIKWGRPK 303 (377)
T ss_pred EEEEEeCCCc
Confidence 8999999983
No 66
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=4.8e-10 Score=110.00 Aligned_cols=81 Identities=32% Similarity=0.456 Sum_probs=73.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
++.|+|.|||+..+..+++.||..||.|++|+|..+.. .+.+.|||||+|-++.+|..|+++|..+.+.| |.
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~---k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyG-----Rr 684 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIG---KGAHRGFGFVDFLTPREAKNAFDALGSTHLYG-----RR 684 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhc---chhhccceeeeccCcHHHHHHHHhhcccceec-----hh
Confidence 57899999999999999999999999999999997621 14455699999999999999999999999999 89
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|.++||+..
T Consensus 685 LVLEwA~~d 693 (725)
T KOG0110|consen 685 LVLEWAKSD 693 (725)
T ss_pred hheehhccc
Confidence 999999875
No 67
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.96 E-value=9.2e-10 Score=92.90 Aligned_cols=85 Identities=12% Similarity=0.311 Sum_probs=71.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEE-EEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEV-RLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v-~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+..|||+||.++++|..|.++|+.||.+... +++.+..+ |++++|+||.|.+.+.+.+|+..|||+.+.. +
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~t---g~~~~~g~i~~~sfeasd~ai~s~ngq~l~n-----r 167 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDT---GNPKGFGFINYASFEASDAAIGSMNGQYLCN-----R 167 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccC---CCCCCCeEEechhHHHHHHHHHHhccchhcC-----C
Confidence 3689999999999999999999999998653 34444322 6667799999999999999999999999988 8
Q ss_pred cEEEEeecCCCCCC
Q 025677 228 FLRLQFSRNPGPRS 241 (249)
Q Consensus 228 ~LrV~~ak~~~~r~ 241 (249)
++.|+|++....++
T Consensus 168 ~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 168 PITVSYAFKKDTKG 181 (203)
T ss_pred ceEEEEEEecCCCc
Confidence 99999998764443
No 68
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=2.1e-09 Score=100.86 Aligned_cols=77 Identities=17% Similarity=0.298 Sum_probs=69.6
Q ss_pred EEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEE
Q 025677 152 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRL 231 (249)
Q Consensus 152 LfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~LrV 231 (249)
|||.||+.+++.++|.++|+.||+|.+|++..++.+ +||| ||+|++++.|.+|++.|||..+.+ +.|.|
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-----~kg~-FV~f~~e~~a~~ai~~~ng~ll~~-----kki~v 147 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-----SKGY-FVQFESEESAKKAIEKLNGMLLNG-----KKIYV 147 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-----ceee-EEEeCCHHHHHHHHHHhcCcccCC-----CeeEE
Confidence 999999999999999999999999999999988764 6779 999999999999999999999999 67888
Q ss_pred EeecCCCC
Q 025677 232 QFSRNPGP 239 (249)
Q Consensus 232 ~~ak~~~~ 239 (249)
........
T Consensus 148 g~~~~~~e 155 (369)
T KOG0123|consen 148 GLFERKEE 155 (369)
T ss_pred eeccchhh
Confidence 77665433
No 69
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.94 E-value=2.1e-09 Score=92.20 Aligned_cols=80 Identities=25% Similarity=0.410 Sum_probs=67.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCC-CCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPF-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~f-G~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
...+||..+|.-+.+.+|..+|.+| |.+..+++..++ +.|.+||||||+|++++.|+-|.+.||+|.+.+ +
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnk---rTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e-----~ 120 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNK---RTGNSKGYAFVEFESEEVAKIAAETMNNYLLME-----H 120 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeeccc---ccCCcCceEEEEeccHHHHHHHHHHhhhhhhhh-----h
Confidence 4679999999999999999999999 556666664433 237888899999999999999999999999999 7
Q ss_pred cEEEEeecC
Q 025677 228 FLRLQFSRN 236 (249)
Q Consensus 228 ~LrV~~ak~ 236 (249)
.|.+.+-.+
T Consensus 121 lL~c~vmpp 129 (214)
T KOG4208|consen 121 LLECHVMPP 129 (214)
T ss_pred eeeeEEeCc
Confidence 788887654
No 70
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=2.4e-09 Score=105.13 Aligned_cols=80 Identities=28% Similarity=0.373 Sum_probs=70.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEE
Q 025677 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 230 (249)
Q Consensus 151 tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~Lr 230 (249)
+|||.||++++|.++|..+|...|.|+++.|...+....+=.+.||+||+|.++++|+.|+++|||+.|++ ..|.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldG-----H~l~ 591 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDG-----HKLE 591 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecC-----ceEE
Confidence 39999999999999999999999999999988655433233466899999999999999999999999999 5688
Q ss_pred EEeec
Q 025677 231 LQFSR 235 (249)
Q Consensus 231 V~~ak 235 (249)
|+++.
T Consensus 592 lk~S~ 596 (725)
T KOG0110|consen 592 LKISE 596 (725)
T ss_pred EEecc
Confidence 99887
No 71
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.81 E-value=3.6e-09 Score=92.03 Aligned_cols=70 Identities=29% Similarity=0.548 Sum_probs=61.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 224 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 224 (249)
.|.||||.||..+|||++|+.+|+.|.++..++|-.+. |.| .|||+|++.+.|..||..|+|..|...++
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~-----g~~--vaf~~~~~~~~at~am~~lqg~~~s~~dr 278 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG-----GMP--VAFADFEEIEQATDAMNHLQGNLLSSSDR 278 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC-----Ccc--eEeecHHHHHHHHHHHHHhhcceeccccC
Confidence 57899999999999999999999999999888776543 433 89999999999999999999999987664
No 72
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=4.9e-09 Score=96.65 Aligned_cols=166 Identities=13% Similarity=0.218 Sum_probs=106.5
Q ss_pred Ccccccc-ccccCCCCCCCCCCCchhHHHhhhhcCccccCCCCCCCCCCccccCCCCCCCCCCCCCCcccCCCCCCCCCC
Q 025677 38 NYLSQDD-DLGELQPLKDTSTIGSAYDRYLQSAQYSSFTSGEASAFSGDRLRRAVPGGVTRLPVSDPSVTGRHGATGPDL 116 (249)
Q Consensus 38 ~y~~~~~-~r~~~~~~~~~~~~~~~y~r~~~~~~~~~~~~g~~~~~gg~G~~r~~~gg~~G~~~~~~~~~g~~~~gg~~~ 116 (249)
.|.++|| -|..+-.|..-|+|++|+|-...-+....|-.=+-....-+. . --|+|. |+|+
T Consensus 122 sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLA----l-EqMNg~------mlGG-------- 182 (544)
T KOG0124|consen 122 SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLA----L-EQMNGQ------MLGG-------- 182 (544)
T ss_pred EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHH----H-HHhccc------cccC--------
Confidence 4566664 489999999999999999988777654444222111000000 0 124442 2221
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceE
Q 025677 117 VQNLRSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLIL 196 (249)
Q Consensus 117 ~~~gr~~g~g~~~p~~~~~~pg~~~~~~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~ 196 (249)
|.+-.++.-.- ++..|--.........-++|||..+.++.+|+||+.+|+-||+|++|.+....+. +..|||
T Consensus 183 ----RNiKVgrPsNm-pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~---~~HkGy 254 (544)
T KOG0124|consen 183 ----RNIKVGRPSNM-PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTG---RGHKGY 254 (544)
T ss_pred ----ccccccCCCCC-cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCC---CCccce
Confidence 22222210000 0000000000001113478999999999999999999999999999999977654 567789
Q ss_pred EEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEeec
Q 025677 197 CFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSR 235 (249)
Q Consensus 197 aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~LrV~~ak 235 (249)
+|++|.+...-..|+..||=+.+.+ .-|||--+-
T Consensus 255 GfiEy~n~qs~~eAiasMNlFDLGG-----QyLRVGk~v 288 (544)
T KOG0124|consen 255 GFIEYNNLQSQSEAIASMNLFDLGG-----QYLRVGKCV 288 (544)
T ss_pred eeEEeccccchHHHhhhcchhhccc-----ceEeccccc
Confidence 9999999999999999999999888 567775543
No 73
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.76 E-value=2.5e-08 Score=88.46 Aligned_cols=80 Identities=21% Similarity=0.347 Sum_probs=70.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+.+|+|.|||..+++++|+++|..|+.++.+-|-.++. |.+.|+|-|.|...++|+.|++.+||..+++ +.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~----G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG-----~~ 153 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA----GRSLGTADVSFNRRDDAERAVKKYNGVALDG-----RP 153 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC----CCCCccceeeecchHhHHHHHHHhcCcccCC-----ce
Confidence 36899999999999999999999999888887777776 5566699999999999999999999999999 77
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|++.....+
T Consensus 154 mk~~~i~~~ 162 (243)
T KOG0533|consen 154 MKIEIISSP 162 (243)
T ss_pred eeeEEecCc
Confidence 888777554
No 74
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=2.5e-08 Score=93.73 Aligned_cols=74 Identities=26% Similarity=0.364 Sum_probs=67.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 229 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 229 (249)
..|||| +++||..|.++|+++|.+.+|++..+. + +.|||||.|.++++|++||++||-..+.+ ++|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-----slgy~yvnf~~~~da~~A~~~~n~~~~~~-----~~~ 67 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-----SLGYAYVNFQQPADAERALDTMNFDVLKG-----KPI 67 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-----ccceEEEecCCHHHHHHHHHHcCCcccCC-----cEE
Confidence 469999 899999999999999999999999776 3 44599999999999999999999999999 899
Q ss_pred EEEeecCC
Q 025677 230 RLQFSRNP 237 (249)
Q Consensus 230 rV~~ak~~ 237 (249)
+|.|+...
T Consensus 68 rim~s~rd 75 (369)
T KOG0123|consen 68 RIMWSQRD 75 (369)
T ss_pred EeehhccC
Confidence 99999754
No 75
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.75 E-value=2.2e-08 Score=88.46 Aligned_cols=80 Identities=16% Similarity=0.280 Sum_probs=71.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
...+||+|+.+.+|.+++...|+.||.|..|.|..++.. |.+|+|+||+|.+.+.+++|+. ||+..|.+ +.
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~---~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~-----~~ 171 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFR---GHPKGFAYVEFSSYELVEEAYK-LDGSEIPG-----PA 171 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccC---CCcceeEEEecccHhhhHHHhh-cCCccccc-----cc
Confidence 478999999999999999999999999998888877654 6678899999999999999998 99999999 78
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
+.|.+.+-.
T Consensus 172 i~vt~~r~~ 180 (231)
T KOG4209|consen 172 IEVTLKRTN 180 (231)
T ss_pred ceeeeeeee
Confidence 999888754
No 76
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.70 E-value=3.6e-08 Score=97.09 Aligned_cols=83 Identities=24% Similarity=0.287 Sum_probs=70.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.+.|||+||++.++++.|...|..||.|..|+|...++..-+-...-|+||-|-+..+|++|++.|||..+.. ..
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~-----~e 248 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME-----YE 248 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee-----ee
Confidence 3679999999999999999999999999999999533221111223499999999999999999999999999 88
Q ss_pred EEEEeecC
Q 025677 229 LRLQFSRN 236 (249)
Q Consensus 229 LrV~~ak~ 236 (249)
|++-|++.
T Consensus 249 ~K~gWgk~ 256 (877)
T KOG0151|consen 249 MKLGWGKA 256 (877)
T ss_pred eeeccccc
Confidence 99999964
No 77
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.68 E-value=5.8e-08 Score=92.25 Aligned_cols=80 Identities=28% Similarity=0.466 Sum_probs=64.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
...+|||.|||+++++.+|+++|.+||.|++..|..+. +.++...||||+|.+.++++.|+++- =..|.+ +
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~---~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~-----~ 357 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS---PGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG-----R 357 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEec---cCCCcCceEEEEEeecchhhhhhhcC-ccccCC-----e
Confidence 45669999999999999999999999999999888654 22443469999999999999999764 444454 7
Q ss_pred cEEEEeecC
Q 025677 228 FLRLQFSRN 236 (249)
Q Consensus 228 ~LrV~~ak~ 236 (249)
.|.|+-.+.
T Consensus 358 kl~Veek~~ 366 (419)
T KOG0116|consen 358 KLNVEEKRP 366 (419)
T ss_pred eEEEEeccc
Confidence 788887665
No 78
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.65 E-value=3.2e-08 Score=86.24 Aligned_cols=72 Identities=24% Similarity=0.441 Sum_probs=65.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 229 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 229 (249)
..+||++||+.+.+++|+++|..||.+.+|.+... |+||+|++..+|+.|+..||+..|.+ ..+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g-----------f~fv~fed~rda~Dav~~l~~~~l~~-----e~~ 65 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKNG-----------FGFVEFEDPRDADDAVHDLDGKELCG-----ERL 65 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeecc-----------cceeccCchhhhhcccchhcCceecc-----eee
Confidence 36899999999999999999999999998877543 99999999999999999999999999 449
Q ss_pred EEEeecCC
Q 025677 230 RLQFSRNP 237 (249)
Q Consensus 230 rV~~ak~~ 237 (249)
.|+|++..
T Consensus 66 vve~~r~~ 73 (216)
T KOG0106|consen 66 VVEHARGK 73 (216)
T ss_pred eeeccccc
Confidence 99999864
No 79
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.60 E-value=1.9e-08 Score=87.21 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=67.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.+||||+|+...++|+-|.++|-+-|.|.+|.|...+.. +.| ||||+|.++....-|++.|||..+.+ +.
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~----~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~-----~e 78 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQ----EQK-FAYVFFPNENSVQLAGQLENGDDLEE-----DE 78 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccC----CCc-eeeeecccccchhhhhhhcccchhcc-----ch
Confidence 389999999999999999999999999999988876653 444 99999999999999999999999998 56
Q ss_pred EEEEee
Q 025677 229 LRLQFS 234 (249)
Q Consensus 229 LrV~~a 234 (249)
|+|++-
T Consensus 79 ~q~~~r 84 (267)
T KOG4454|consen 79 EQRTLR 84 (267)
T ss_pred hhcccc
Confidence 776654
No 80
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.58 E-value=2.7e-07 Score=80.20 Aligned_cols=76 Identities=29% Similarity=0.669 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++.+||+.|||.+++.+.|..+|++|.+.++|+++.... + .|||+|.+...|..|..+|++..|.-. .
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~----~----iAfve~~~d~~a~~a~~~lq~~~it~~----~ 212 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRS----G----IAFVEFLSDRQASAAQQALQGFKITKK----N 212 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCC----c----eeEEecchhhhhHHHhhhhccceeccC----c
Confidence 358999999999999999999999999999999998653 2 899999999999999999999999852 4
Q ss_pred cEEEEeec
Q 025677 228 FLRLQFSR 235 (249)
Q Consensus 228 ~LrV~~ak 235 (249)
+|+|.|++
T Consensus 213 ~m~i~~a~ 220 (221)
T KOG4206|consen 213 TMQITFAK 220 (221)
T ss_pred eEEecccC
Confidence 79999886
No 81
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.56 E-value=7.4e-08 Score=92.72 Aligned_cols=70 Identities=27% Similarity=0.401 Sum_probs=62.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+..+|+|-|||..+++++|..+|+.||+|++|+.-..+. | .+||+|.|..+|++|+++|++..|-+ +
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~----~----~~~v~FyDvR~A~~Alk~l~~~~~~~-----~ 140 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKR----G----IVFVEFYDVRDAERALKALNRREIAG-----K 140 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccC----c----eEEEEEeehHhHHHHHHHHHHHHhhh-----h
Confidence 568999999999999999999999999999987655432 3 89999999999999999999999998 5
Q ss_pred cEE
Q 025677 228 FLR 230 (249)
Q Consensus 228 ~Lr 230 (249)
.|+
T Consensus 141 ~~k 143 (549)
T KOG4660|consen 141 RIK 143 (549)
T ss_pred hhc
Confidence 566
No 82
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.55 E-value=2.6e-07 Score=84.71 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEE--------EEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCcee
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKE--------VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM 219 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~--------v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i 219 (249)
.+..|||.|||.++|.+|+.++|++||-|.. |+|..++. |+.||=|.+.|-..++.+.|++.|++..+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~----G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ----GKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC----CCccCceEEEeecccHHHHHHHHhCcccc
Confidence 3456999999999999999999999998863 66666554 67777999999999999999999999999
Q ss_pred CCCCCCCccEEEEeecCC
Q 025677 220 DEDDPDSKFLRLQFSRNP 237 (249)
Q Consensus 220 ~g~~~~~r~LrV~~ak~~ 237 (249)
.+ +.|+|+-|+..
T Consensus 209 rg-----~~~rVerAkfq 221 (382)
T KOG1548|consen 209 RG-----KKLRVERAKFQ 221 (382)
T ss_pred cC-----cEEEEehhhhh
Confidence 98 78999999864
No 83
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.55 E-value=8.1e-08 Score=88.14 Aligned_cols=70 Identities=23% Similarity=0.393 Sum_probs=58.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 221 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g 221 (249)
..++|||++|+|+++++.|++.|++||+|.++.++.+.+. +.++||+||+|++.++..+++.. .-..|++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t---~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dg 74 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPST---GRSRGFGFVTFATPEGVDAVLNA-RTHKLDG 74 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCC---CCcccccceecCCCcchheeecc-cccccCC
Confidence 3589999999999999999999999999999999976543 56667999999999998888753 2233444
No 84
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.51 E-value=2e-07 Score=90.17 Aligned_cols=81 Identities=16% Similarity=0.344 Sum_probs=70.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.+.|||.+|...+.-.+|+.||++||.|+-.+|+++... ++- ..|+||++.+.++|.+||+.|+-+.+.+ +.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRs-PGa--RCYGfVTMSts~eAtkCI~hLHrTELHG-----rm 476 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARS-PGA--RCYGFVTMSTSAEATKCIEHLHRTELHG-----RM 476 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCC-CCc--ceeEEEEecchHHHHHHHHHhhhhhhcc-----ee
Confidence 467999999999999999999999999999999975421 222 3499999999999999999999999999 89
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|.|+-+++.
T Consensus 477 ISVEkaKNE 485 (940)
T KOG4661|consen 477 ISVEKAKNE 485 (940)
T ss_pred eeeeecccC
Confidence 999999874
No 85
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.42 E-value=2.4e-06 Score=80.06 Aligned_cols=79 Identities=18% Similarity=0.311 Sum_probs=71.2
Q ss_pred CcEEEEcCCCCC-CCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 149 SSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 149 ~~tLfVgnLp~~-~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+..|.|.||..+ +|.+.|..+|+-||+|.+|+|..++.. -|.|.+.+..+|+-|++.|+|.++.+ +
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd--------~ALIQmsd~~qAqLA~~hL~g~~l~g-----k 363 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD--------NALIQMSDGQQAQLAMEHLEGHKLYG-----K 363 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc--------ceeeeecchhHHHHHHHHhhcceecC-----c
Confidence 578999999876 899999999999999999999976532 69999999999999999999999999 8
Q ss_pred cEEEEeecCCCCC
Q 025677 228 FLRLQFSRNPGPR 240 (249)
Q Consensus 228 ~LrV~~ak~~~~r 240 (249)
.|+|.++|.....
T Consensus 364 ~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 364 KLRVTLSKHTNVQ 376 (492)
T ss_pred eEEEeeccCcccc
Confidence 8999999987443
No 86
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.40 E-value=3e-07 Score=81.41 Aligned_cols=78 Identities=18% Similarity=0.366 Sum_probs=69.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
-.+||+|.|..+++++.|...|.+|-.+...+++.++. .||+|||+||.|.+++++..|+..|||..+.. ++
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkR---TgKSkgygfVSf~~pad~~rAmrem~gkyVgs-----rp 261 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKR---TGKSKGYGFVSFRDPADYVRAMREMNGKYVGS-----RP 261 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhcccccccc---ccccccceeeeecCHHHHHHHHHhhccccccc-----ch
Confidence 46799999999999999999999999999888887653 38889999999999999999999999999887 77
Q ss_pred EEEEee
Q 025677 229 LRLQFS 234 (249)
Q Consensus 229 LrV~~a 234 (249)
|++.-+
T Consensus 262 iklRkS 267 (290)
T KOG0226|consen 262 IKLRKS 267 (290)
T ss_pred hHhhhh
Confidence 776543
No 87
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.39 E-value=7e-07 Score=82.04 Aligned_cols=81 Identities=17% Similarity=0.308 Sum_probs=64.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
..+++||+.||.++++++|++.|.+||.|..+.++.+... .++++|+||+|.+++.+++++. ..-+.|.+ +
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~---~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~g-----k 166 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTT---SRPRGFGFVTFDSEDSVDKVTL-QKFHDFNG-----K 166 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccc---cccccceeeEeccccccceecc-cceeeecC-----c
Confidence 3679999999999999999999999998888877755432 3455699999999999999874 45566666 5
Q ss_pred cEEEEeecCC
Q 025677 228 FLRLQFSRNP 237 (249)
Q Consensus 228 ~LrV~~ak~~ 237 (249)
.+.|.-|-++
T Consensus 167 ~vevkrA~pk 176 (311)
T KOG4205|consen 167 KVEVKRAIPK 176 (311)
T ss_pred eeeEeeccch
Confidence 6667666543
No 88
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.25 E-value=9.2e-06 Score=62.62 Aligned_cols=85 Identities=21% Similarity=0.321 Sum_probs=65.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCC--CCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 150 STLYVEGLPADSTKREVAHIFRPF--VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~f--G~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+||-|.|||...|.++|.+++... |.+.-+.|..+-.. +-..|||||.|.+++.|.+-.+.++|.++..-.. .+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~---~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s-~K 77 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKN---KCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNS-KK 77 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccC---CCceEEEEEEcCCHHHHHHHHHHHcCCccccCCC-Cc
Confidence 689999999999999999888643 45555555543211 2345699999999999999999999999975432 37
Q ss_pred cEEEEeecCCC
Q 025677 228 FLRLQFSRNPG 238 (249)
Q Consensus 228 ~LrV~~ak~~~ 238 (249)
...|.||+-.+
T Consensus 78 vc~i~yAriQG 88 (97)
T PF04059_consen 78 VCEISYARIQG 88 (97)
T ss_pred EEEEehhHhhC
Confidence 89999998654
No 89
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.20 E-value=7.1e-06 Score=76.23 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=67.3
Q ss_pred CcEEEEcCCC--CCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 149 SSTLYVEGLP--ADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 149 ~~tLfVgnLp--~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
++.|.+.=|. ..+|-+-|..++...|.|..|.|..+. | ..|.|||++.+.|++|..+|||..|...+
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-----g---VQAmVEFdsv~~AqrAk~alNGADIYsGC--- 188 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-----G---VQAMVEFDSVEVAQRAKAALNGADIYSGC--- 188 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-----c---eeeEEeechhHHHHHHHhhcccccccccc---
Confidence 4677666555 458999999999999999999888764 3 38999999999999999999999999988
Q ss_pred ccEEEEeecCC
Q 025677 227 KFLRLQFSRNP 237 (249)
Q Consensus 227 r~LrV~~ak~~ 237 (249)
-.|+|+|||+.
T Consensus 189 CTLKIeyAkP~ 199 (494)
T KOG1456|consen 189 CTLKIEYAKPT 199 (494)
T ss_pred eeEEEEecCcc
Confidence 58999999965
No 90
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.18 E-value=5.4e-06 Score=76.47 Aligned_cols=81 Identities=19% Similarity=0.326 Sum_probs=68.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEE--------EEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKE--------VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 220 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~--------v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~ 220 (249)
..||||-+||..+++++|.++|.+++.|+. |.|-+++ ..+++|+=|.|+|++..+|+.|+..+++..+.
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dk---eT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDK---ETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccc---cccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 579999999999999999999999998863 2333222 34788889999999999999999999999999
Q ss_pred CCCCCCccEEEEeecCC
Q 025677 221 EDDPDSKFLRLQFSRNP 237 (249)
Q Consensus 221 g~~~~~r~LrV~~ak~~ 237 (249)
+ .+|+|.+|...
T Consensus 143 g-----n~ikvs~a~~r 154 (351)
T KOG1995|consen 143 G-----NTIKVSLAERR 154 (351)
T ss_pred C-----CCchhhhhhhc
Confidence 9 56888888643
No 91
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.10 E-value=3.2e-06 Score=81.75 Aligned_cols=81 Identities=25% Similarity=0.448 Sum_probs=72.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
..+.+||++||..+++.++.++...||.++..+++.+... |.+|+|||.+|.++.....|+..|||.++.+ +
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~---g~skg~af~ey~dpsvtd~A~agLnGm~lgd-----~ 359 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT---GNSKGFAFCEYCDPSVTDQAIAGLNGMQLGD-----K 359 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc---ccccceeeeeeeCCcchhhhhcccchhhhcC-----c
Confidence 4578999999999999999999999999999999876543 6777899999999999999999999999999 7
Q ss_pred cEEEEeecC
Q 025677 228 FLRLQFSRN 236 (249)
Q Consensus 228 ~LrV~~ak~ 236 (249)
.|.|+.|-.
T Consensus 360 ~lvvq~A~~ 368 (500)
T KOG0120|consen 360 KLVVQRAIV 368 (500)
T ss_pred eeEeehhhc
Confidence 799988754
No 92
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.06 E-value=1.2e-05 Score=75.32 Aligned_cols=78 Identities=21% Similarity=0.356 Sum_probs=65.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++.||+..|+|.+++||+|+++|..-|...+......+.++ +|.+.+++.++|..|+..++.+.+.+. .
T Consensus 413 psatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~k-------mal~q~~sveeA~~ali~~hnh~lgen----~ 481 (492)
T KOG1190|consen 413 PSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRK-------MALPQLESVEEAIQALIDLHNHYLGEN----H 481 (492)
T ss_pred chhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcc-------eeecccCChhHhhhhccccccccCCCC----c
Confidence 47899999999999999999999998887655444332211 999999999999999999999999885 3
Q ss_pred cEEEEeecC
Q 025677 228 FLRLQFSRN 236 (249)
Q Consensus 228 ~LrV~~ak~ 236 (249)
.|||+|+|+
T Consensus 482 hlRvSFSks 490 (492)
T KOG1190|consen 482 HLRVSFSKS 490 (492)
T ss_pred eEEEEeecc
Confidence 699999986
No 93
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.06 E-value=2.6e-05 Score=58.49 Aligned_cols=69 Identities=23% Similarity=0.328 Sum_probs=47.2
Q ss_pred cEEEEcCCCCCCCHH----HHHHHhcCCCC-eEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025677 150 STLYVEGLPADSTKR----EVAHIFRPFVG-YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 224 (249)
Q Consensus 150 ~tLfVgnLp~~~tee----eL~~lF~~fG~-i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 224 (249)
..|||.|||.+.+.. -|+.|+..||+ |.+| .. + .|+|.|.+.+.|++|.+.|+|..+.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---~~------~----tAilrF~~~~~A~RA~KRmegEdVfG--- 66 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---SG------G----TAILRFPNQEFAERAQKRMEGEDVFG--- 66 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----T------T-----EEEEESSHHHHHHHHHHHTT--SSS---
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---eC------C----EEEEEeCCHHHHHHHHHhhccccccc---
Confidence 469999999998865 46778889986 2222 12 2 79999999999999999999999999
Q ss_pred CCccEEEEeecC
Q 025677 225 DSKFLRLQFSRN 236 (249)
Q Consensus 225 ~~r~LrV~~ak~ 236 (249)
..|.|+|...
T Consensus 67 --~kI~v~~~~~ 76 (90)
T PF11608_consen 67 --NKISVSFSPK 76 (90)
T ss_dssp --S--EEESS--
T ss_pred --ceEEEEEcCC
Confidence 6799999843
No 94
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.01 E-value=1.3e-05 Score=76.57 Aligned_cols=58 Identities=22% Similarity=0.420 Sum_probs=47.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHH
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSA 213 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~ 213 (249)
.-|-+.+|||+||++||.++|+.+ .|.++.+... + |++.|=|||+|.+++++++|+++
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~-~----Gr~sGeA~Ve~~seedv~~Alkk 68 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR-N----GRPSGEAYVEFTSEEDVEKALKK 68 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc-C----CCcCcceEEEeechHHHHHHHHh
Confidence 567788999999999999999998 5777655443 3 44455899999999999999963
No 95
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.89 E-value=1.6e-05 Score=74.95 Aligned_cols=70 Identities=24% Similarity=0.318 Sum_probs=57.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeC---CCccCCCcc-------ceEEEEEeCCHHHHHHHHHHHcCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK---ESKLRGGDP-------LILCFVDFENPACAATALSALQGY 217 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~---~~~~~~G~~-------kg~aFVeF~~~~~A~~Al~~LnG~ 217 (249)
+++||.+.|||.+-.-+.|.+||+.+|.|+.|+|... ....++..+ +-||||+|+..+.|.+|.+.|+-.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 5799999999999888999999999999999999854 222222322 569999999999999999988543
No 96
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.84 E-value=1.9e-05 Score=71.87 Aligned_cols=81 Identities=26% Similarity=0.310 Sum_probs=70.2
Q ss_pred CCcEEE-EcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 148 ASSTLY-VEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 148 ~~~tLf-VgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
...++| |++|++++++++|+..|..++.|..+++...+. .|.+++|++|+|.+...+..|+.. +...+.+
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~---s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~----- 253 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEE---SGDSKGFAYVDFSAGNSKKLALND-QTRSIGG----- 253 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCC---ccchhhhhhhhhhhchhHHHHhhc-ccCcccC-----
Confidence 345666 999999999999999999999999999987653 388999999999999999999877 7888887
Q ss_pred ccEEEEeecCC
Q 025677 227 KFLRLQFSRNP 237 (249)
Q Consensus 227 r~LrV~~ak~~ 237 (249)
++++|.+.+..
T Consensus 254 ~~~~~~~~~~~ 264 (285)
T KOG4210|consen 254 RPLRLEEDEPR 264 (285)
T ss_pred cccccccCCCC
Confidence 88999998765
No 97
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.83 E-value=5e-05 Score=59.24 Aligned_cols=59 Identities=22% Similarity=0.354 Sum_probs=39.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCc
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 217 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~ 217 (249)
..|+|.+++..|+.++|+++|++|+.|..|.+....+ -|+|-|.+++.|++|++++.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~---------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT---------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S---------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC---------EEEEEECCcchHHHHHHHHHhc
Confidence 4689999999999999999999999999888876543 6999999999999999887544
No 98
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.76 E-value=0.00027 Score=70.33 Aligned_cols=76 Identities=22% Similarity=0.404 Sum_probs=62.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeE-EEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYK-EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~-~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++.|-|.|+|++++-+||.++|..|-.+- +|++...+. |++-|-|.|-|++.++|..|..-|++.+|.. +
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~----G~pTGe~mvAfes~~eAr~A~~dl~~~~i~n-----r 937 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDD----GVPTGECMVAFESQEEARRASMDLDGQKIRN-----R 937 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCC----CCcccceeEeecCHHHHHhhhhccccCcccc-----e
Confidence 35789999999999999999999996553 455555554 5555589999999999999999999999998 6
Q ss_pred cEEEEe
Q 025677 228 FLRLQF 233 (249)
Q Consensus 228 ~LrV~~ 233 (249)
.++|.+
T Consensus 938 ~V~l~i 943 (944)
T KOG4307|consen 938 VVSLRI 943 (944)
T ss_pred eEEEEe
Confidence 777653
No 99
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.64 E-value=1.4e-05 Score=77.24 Aligned_cols=80 Identities=19% Similarity=0.293 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.+|+|+--|+..+++.+|.++|+.+|.|..|+++.++.. +.+||.|||+|.+.+..-.|+ +|.|+.+.+ .
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s---~rskgi~Yvef~D~~sVp~ai-aLsGqrllg-----~ 248 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNS---RRSKGIAYVEFCDEQSVPLAI-ALSGQRLLG-----V 248 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccc---hhhcceeEEEEecccchhhHh-hhcCCcccC-----c
Confidence 4589999999999999999999999999999999976543 446779999999999999998 899999999 6
Q ss_pred cEEEEeecC
Q 025677 228 FLRLQFSRN 236 (249)
Q Consensus 228 ~LrV~~ak~ 236 (249)
+|.|+....
T Consensus 249 pv~vq~sEa 257 (549)
T KOG0147|consen 249 PVIVQLSEA 257 (549)
T ss_pred eeEecccHH
Confidence 788877654
No 100
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.62 E-value=3.8e-05 Score=67.15 Aligned_cols=70 Identities=21% Similarity=0.337 Sum_probs=60.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
...|+|.|++..+.+++|.+.|+++|.+..+.+ .. + ++||+|...++|..|++.|++.++.+ +.
T Consensus 99 ~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~-----~----~~~v~Fs~~~da~ra~~~l~~~~~~~-----~~ 162 (216)
T KOG0106|consen 99 HFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RR-----N----FAFVEFSEQEDAKRALEKLDGKKLNG-----RR 162 (216)
T ss_pred cceeeeccchhhhhHHHHhhhhcccCCCchhhh--hc-----c----ccceeehhhhhhhhcchhccchhhcC-----ce
Confidence 478999999999999999999999999855444 11 2 89999999999999999999999999 67
Q ss_pred EEEEee
Q 025677 229 LRLQFS 234 (249)
Q Consensus 229 LrV~~a 234 (249)
|.+...
T Consensus 163 l~~~~~ 168 (216)
T KOG0106|consen 163 ISVEKN 168 (216)
T ss_pred eeeccc
Confidence 888443
No 101
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.55 E-value=0.00025 Score=65.40 Aligned_cols=82 Identities=20% Similarity=0.366 Sum_probs=63.0
Q ss_pred CcEEEEcCCCCCCCHHHH------HHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025677 149 SSTLYVEGLPADSTKREV------AHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 222 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL------~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~ 222 (249)
.+-+||-+||+.+..|++ .++|.+||.|+.|.|..+......-....-.||+|.+.++|.+||.+.+|..++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG- 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG- 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC-
Confidence 467999999999887762 3689999999998776543111101111124999999999999999999999999
Q ss_pred CCCCccEEEEeec
Q 025677 223 DPDSKFLRLQFSR 235 (249)
Q Consensus 223 ~~~~r~LrV~~ak 235 (249)
|.|+..|..
T Consensus 193 ----r~lkatYGT 201 (480)
T COG5175 193 ----RVLKATYGT 201 (480)
T ss_pred ----ceEeeecCc
Confidence 889998875
No 102
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.52 E-value=0.0002 Score=49.01 Aligned_cols=52 Identities=17% Similarity=0.314 Sum_probs=42.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHH
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 211 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al 211 (249)
++|-|.+.+.+..+.-| ..|.+||+|.++.+....+ +.+|.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~~~~~---------~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGEIVDIYVPESTN---------WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCCEEEEEcCCCCc---------EEEEEECCHHHHHhhC
Confidence 57889999987775555 5888999999988763322 8999999999999985
No 103
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.49 E-value=8.5e-05 Score=68.68 Aligned_cols=72 Identities=11% Similarity=0.205 Sum_probs=60.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCC--CeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 224 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG--~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 224 (249)
-.+|||||-|++|++||.+.....| .|.++++..+++. |++||||+|...+....++.++.|--..|.++++
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~N---GQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTN---GQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccC---CcccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 4599999999999999998887654 4556677665543 8999999999999999999999999999999764
No 104
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.46 E-value=0.0023 Score=59.93 Aligned_cols=77 Identities=14% Similarity=0.230 Sum_probs=67.6
Q ss_pred CCcEEEEcCCCCC-CCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 148 ASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 148 ~~~tLfVgnLp~~-~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
+...+-|.+|... ++.+.|..+|..||+|..|++++.+. | -|.|++.+..+.++|+..||+..+.+
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----g----tamVemgd~~aver~v~hLnn~~lfG----- 352 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----G----TAMVEMGDAYAVERAVTHLNNIPLFG----- 352 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----c----eeEEEcCcHHHHHHHHHHhccCcccc-----
Confidence 3578999999976 66788999999999999999987654 3 89999999999999999999999998
Q ss_pred ccEEEEeecCC
Q 025677 227 KFLRLQFSRNP 237 (249)
Q Consensus 227 r~LrV~~ak~~ 237 (249)
..|.|.+++..
T Consensus 353 ~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 353 GKLNVCVSKQN 363 (494)
T ss_pred ceEEEeecccc
Confidence 67888888754
No 105
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.46 E-value=0.0005 Score=66.00 Aligned_cols=60 Identities=23% Similarity=0.381 Sum_probs=46.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEE-EEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHH
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKE-VRLVIKESKLRGGDPLILCFVDFENPACAATALSA 213 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~-v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~ 213 (249)
..|-+.+||+.||++||.++|+-.--+.. +.++.+... ++-|=|||.|++.+.|++||..
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rg----R~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRG----RPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCC----CcccceEEEecCHHHHHHHHHH
Confidence 57889999999999999999998643333 344455444 3445899999999999999864
No 106
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.0005 Score=67.05 Aligned_cols=75 Identities=23% Similarity=0.349 Sum_probs=60.6
Q ss_pred cEEEEcCCCCCCC------HHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025677 150 STLYVEGLPADST------KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 223 (249)
Q Consensus 150 ~tLfVgnLp~~~t------eeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 223 (249)
+.|+|-|+|---. ..-|..+|+++|.+..+.+..++. |.+|||.|++|.+..+|+.|++.|||+.|+-++
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~----ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE----GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc----CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 6799999995322 234667899999999988886664 558889999999999999999999999999853
Q ss_pred CCCccEEEE
Q 025677 224 PDSKFLRLQ 232 (249)
Q Consensus 224 ~~~r~LrV~ 232 (249)
.+.|.
T Consensus 135 ----tf~v~ 139 (698)
T KOG2314|consen 135 ----TFFVR 139 (698)
T ss_pred ----eEEee
Confidence 45553
No 107
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.27 E-value=0.00039 Score=70.76 Aligned_cols=79 Identities=19% Similarity=0.344 Sum_probs=69.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
++.|||++|..++....|...|..||.|..|.+-.... ||+|.|++...|+.|+..|-|..|.+.+ +.
T Consensus 455 ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~---------yayi~yes~~~aq~a~~~~rgap~G~P~---~r 522 (975)
T KOG0112|consen 455 TTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP---------YAYIQYESPPAAQAATHDMRGAPLGGPP---RR 522 (975)
T ss_pred ceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc---------ceeeecccCccchhhHHHHhcCcCCCCC---cc
Confidence 57899999999999999999999999998877654432 9999999999999999999999999976 67
Q ss_pred EEEEeecCCCC
Q 025677 229 LRLQFSRNPGP 239 (249)
Q Consensus 229 LrV~~ak~~~~ 239 (249)
|+|.|+..++.
T Consensus 523 ~rvdla~~~~~ 533 (975)
T KOG0112|consen 523 LRVDLASPPGA 533 (975)
T ss_pred cccccccCCCC
Confidence 99999987643
No 108
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.18 E-value=0.00039 Score=68.09 Aligned_cols=80 Identities=21% Similarity=0.280 Sum_probs=66.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhc-CCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025677 146 PDASSTLYVEGLPADSTKREVAHIFR-PFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 224 (249)
Q Consensus 146 ~~~~~tLfVgnLp~~~teeeL~~lF~-~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 224 (249)
...++.|||.||-.-.|.-+|+.++. ..|.|.+..|-.-++ -|||.|.+.++|.+...+|+|.++...++
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKS---------hCyV~yss~eEA~atr~AlhnV~WP~sNP 511 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKS---------HCYVSYSSVEEAAATREALHNVQWPPSNP 511 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhc---------ceeEecccHHHHHHHHHHHhccccCCCCC
Confidence 34579999999999999999999999 455555554332222 59999999999999999999999999877
Q ss_pred CCccEEEEeecC
Q 025677 225 DSKFLRLQFSRN 236 (249)
Q Consensus 225 ~~r~LrV~~ak~ 236 (249)
+.|.+.|...
T Consensus 512 --K~L~adf~~~ 521 (718)
T KOG2416|consen 512 --KHLIADFVRA 521 (718)
T ss_pred --ceeEeeecch
Confidence 8999999863
No 109
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.00099 Score=64.29 Aligned_cols=66 Identities=29% Similarity=0.334 Sum_probs=48.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccce---EEEEEeCCHHHHHHHHHHH
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLI---LCFVDFENPACAATALSAL 214 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg---~aFVeF~~~~~A~~Al~~L 214 (249)
-+++||||+||++++|++|...|.+||.++ |.-..+...+..=-+|| |+|+.|+++.....-+.+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 367899999999999999999999999864 32222222222223667 9999999998887766554
No 110
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.12 E-value=0.00021 Score=72.34 Aligned_cols=78 Identities=22% Similarity=0.232 Sum_probs=67.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
...|||.|+|+.+|.++|+.+|..+|.+++++++..+. |++||.|||.|.++.+|..+....+...+.. +.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~----gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE-----~~ 806 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA----GKPKGKARVDYNTEADASRKVASVDVAGKRE-----NN 806 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc----cccccceeccCCCcchhhhhcccchhhhhhh-----cC
Confidence 45799999999999999999999999999999887655 7778899999999999999998888888887 45
Q ss_pred EEEEeec
Q 025677 229 LRLQFSR 235 (249)
Q Consensus 229 LrV~~ak 235 (249)
+.|+.+.
T Consensus 807 ~~v~vsn 813 (881)
T KOG0128|consen 807 GEVQVSN 813 (881)
T ss_pred ccccccC
Confidence 6666644
No 111
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.0022 Score=61.94 Aligned_cols=67 Identities=31% Similarity=0.320 Sum_probs=56.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhc-CCCCeEEEEEeeC-CCccCCCccceEEEEEeCCHHHHHHHHHH
Q 025677 143 PLPPDASSTLYVEGLPADSTKREVAHIFR-PFVGYKEVRLVIK-ESKLRGGDPLILCFVDFENPACAATALSA 213 (249)
Q Consensus 143 ~~p~~~~~tLfVgnLp~~~teeeL~~lF~-~fG~i~~v~l~~~-~~~~~~G~~kg~aFVeF~~~~~A~~Al~~ 213 (249)
..+-++.+|||||.||--++-+||..+|. .||.|..+-|-++ +-+-++ |-+=|+|.+..+-.+||.+
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk----GaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK----GAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC----CcceeeecccHHHHHHHhh
Confidence 34556789999999999999999999999 7999999888776 444444 4899999999988888864
No 112
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.84 E-value=0.0013 Score=61.70 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=54.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 221 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g 221 (249)
..|-|.||.+.+|.++++.||...|.|.+++|......-+.--..-.|||.|.|..++..|- .|.+++|-+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvd 78 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVD 78 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeee
Confidence 47999999999999999999999999999998863211111111228999999999988774 677777666
No 113
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.84 E-value=0.0037 Score=60.89 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=48.3
Q ss_pred HHHHhcCCCCeEEEEEeeC-CCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEee
Q 025677 166 VAHIFRPFVGYKEVRLVIK-ESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFS 234 (249)
Q Consensus 166 L~~lF~~fG~i~~v~l~~~-~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~LrV~~a 234 (249)
++.-+++||.|..|.+... ..... .-.-|.-||+|.+.+++++|+++|.|.+|.+ +.+...|-
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~-~~G~GkVFVefas~ed~qrA~~~L~GrKF~n-----RtVvtsYy 489 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENP-VPGTGKVFVEFADTEDSQRAMEELTGRKFAN-----RTVVASYY 489 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCc-CCCcccEEEEecChHHHHHHHHHccCceeCC-----cEEEEEec
Confidence 4445788999999988755 22211 1123478999999999999999999999999 77877774
No 114
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.78 E-value=0.00086 Score=59.73 Aligned_cols=75 Identities=13% Similarity=0.140 Sum_probs=60.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCC-C--------ccCCCccceEEEEEeCCHHHHHHHHHHHcCcee
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE-S--------KLRGGDPLILCFVDFENPACAATALSALQGYRM 219 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~-~--------~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i 219 (249)
.-.||+++||+.+....|+++|++||.|-.|.|.... + +....+..-=+.|+|.+...|....+.||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3579999999999999999999999999988877422 1 111122222468999999999999999999999
Q ss_pred CCCC
Q 025677 220 DEDD 223 (249)
Q Consensus 220 ~g~~ 223 (249)
.+.+
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9854
No 115
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.74 E-value=0.011 Score=44.31 Aligned_cols=54 Identities=19% Similarity=0.359 Sum_probs=41.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHc
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 215 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~Ln 215 (249)
..+||. .|.+....||.++|+.||.|. |.-+.+. -|||...+++.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT----------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT----------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT----------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC----------cEEEEeecHHHHHHHHHHhc
Confidence 556676 999999999999999999974 5555554 69999999999999999885
No 116
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.74 E-value=0.0048 Score=57.16 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=59.1
Q ss_pred CCcEEEEcCCC----CCCC-------HHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcC
Q 025677 148 ASSTLYVEGLP----ADST-------KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG 216 (249)
Q Consensus 148 ~~~tLfVgnLp----~~~t-------eeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG 216 (249)
..+||.+.||= +..+ +++|.+-+++||.|.+|.|.... +.| .+-|.|.+.+.|+.|++.|+|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h---PdG----vvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH---PDG----VVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC---CCc----eeEEEeCChHHHHHHHHHhcC
Confidence 35788888873 2233 45667778999999999877554 224 999999999999999999999
Q ss_pred ceeCCCCCCCccEEEEee
Q 025677 217 YRMDEDDPDSKFLRLQFS 234 (249)
Q Consensus 217 ~~i~g~~~~~r~LrV~~a 234 (249)
..|++ |+|..+..
T Consensus 337 R~fdg-----Rql~A~i~ 349 (382)
T KOG1548|consen 337 RWFDG-----RQLTASIW 349 (382)
T ss_pred eeecc-----eEEEEEEe
Confidence 99999 77876554
No 117
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.73 E-value=0.0074 Score=56.72 Aligned_cols=61 Identities=30% Similarity=0.359 Sum_probs=48.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcC---C-CCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHH
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRP---F-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSA 213 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~---f-G~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~ 213 (249)
--.|-..+||++|++.++.++|.+ . +....|-++...+++..| =|||.|..+++|+.|+.+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTG----dAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTG----DAFVLFACEEDAQFALRK 225 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCccc----ceEEEecCHHHHHHHHHH
Confidence 346778899999999999999963 2 355667777765655554 899999999999999864
No 118
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.63 E-value=0.043 Score=47.19 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=55.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 221 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g 221 (249)
..+.|.+||...++++|+++..+-|.|....+..+ | .+.|+|...++.+-|+.+|+.+++..
T Consensus 116 ~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g----~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 116 YRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------G----VGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred eeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------c----ceeeeeeehhhHHHHHHhhccccccC
Confidence 67999999999999999999999999988877665 3 78999999999999999999887765
No 119
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.58 E-value=0.012 Score=45.55 Aligned_cols=78 Identities=21% Similarity=0.292 Sum_probs=49.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCC-------CccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE-------SKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 221 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~-------~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g 221 (249)
...|-|-+.|+..+ ..|.+.|++||.|.+..-..+. .....+ .+-.|+|+++.+|.+||+ -||..|.+
T Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~---NWi~I~Y~~~~~A~rAL~-~NG~i~~g 80 (100)
T PF05172_consen 6 ETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGG---NWIHITYDNPLSAQRALQ-KNGTIFSG 80 (100)
T ss_dssp CCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCT---TEEEEEESSHHHHHHHHT-TTTEEETT
T ss_pred CeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCC---CEEEEECCCHHHHHHHHH-hCCeEEcC
Confidence 36788889998855 4566789999999877511000 000011 299999999999999995 69999988
Q ss_pred CCCCCccEEEEeec
Q 025677 222 DDPDSKFLRLQFSR 235 (249)
Q Consensus 222 ~~~~~r~LrV~~ak 235 (249)
. -.+-|.|.+
T Consensus 81 ~----~mvGV~~~~ 90 (100)
T PF05172_consen 81 S----LMVGVKPCD 90 (100)
T ss_dssp C----EEEEEEE-H
T ss_pred c----EEEEEEEcH
Confidence 3 345677764
No 120
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.46 E-value=0.01 Score=48.94 Aligned_cols=55 Identities=24% Similarity=0.390 Sum_probs=44.5
Q ss_pred HHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEeecC
Q 025677 165 EVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSRN 236 (249)
Q Consensus 165 eL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~LrV~~ak~ 236 (249)
+|.+.|.+||++.=||++.. .-+|+|.+-+.|.+|+ .|+|.++.+ +.|+|+...+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-----------~mwVTF~dg~sALaal-s~dg~~v~g-----~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-----------TMWVTFRDGQSALAAL-SLDGIQVNG-----RTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-----------CEEEEESSCHHHHHHH-HGCCSEETT-----EEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCC-----------eEEEEECccHHHHHHH-ccCCcEECC-----EEEEEEeCCc
Confidence 67788999999988888765 3689999999999998 589999999 7898877543
No 121
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.18 E-value=0.0058 Score=61.12 Aligned_cols=84 Identities=23% Similarity=0.304 Sum_probs=61.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEE-EEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeC
Q 025677 142 LPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKE-VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 220 (249)
Q Consensus 142 ~~~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~-v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~ 220 (249)
.+.|......|||..||..+++.++.++|+..-.|++ |.|....+++. .+-|||+|..++++.+|+..-.-+.+.
T Consensus 427 vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~----~~~afv~F~~~~a~~~a~~~~~k~y~G 502 (944)
T KOG4307|consen 427 VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLL----RPAAFVAFIHPTAPLTASSVKTKFYPG 502 (944)
T ss_pred CCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccc----cchhhheeccccccchhhhcccccccC
Confidence 3455566789999999999999999999998777766 55554444333 348999999999988887543333333
Q ss_pred CCCCCCccEEEEee
Q 025677 221 EDDPDSKFLRLQFS 234 (249)
Q Consensus 221 g~~~~~r~LrV~~a 234 (249)
. +.|+|.-.
T Consensus 503 ~-----r~irv~si 511 (944)
T KOG4307|consen 503 H-----RIIRVDSI 511 (944)
T ss_pred c-----eEEEeech
Confidence 2 77888643
No 122
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.01 E-value=0.015 Score=54.80 Aligned_cols=69 Identities=17% Similarity=0.271 Sum_probs=55.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCC-e--EEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVG-Y--KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 221 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~-i--~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g 221 (249)
...|-+.+||++.+.|+|.++|..|-. | ..|.++.+..+++. |-|||+|.+.+.|..|+...+.+..+.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPS----GeAFIqm~nae~a~aaaqk~hk~~mk~ 351 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPS----GEAFIQMRNAERARAAAQKCHKKLMKS 351 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcC----hhhhhhhhhhHHHHHHHHHHHHhhccc
Confidence 467889999999999999999998854 2 23777776654444 489999999999999998887776654
No 123
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.92 E-value=0.025 Score=47.98 Aligned_cols=87 Identities=13% Similarity=0.140 Sum_probs=56.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcC-CCCe---EEEEEeeC-CCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRP-FVGY---KEVRLVIK-ESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 223 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~-fG~i---~~v~l~~~-~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 223 (249)
..+|-|.+||+++||+++.+.+++ ++.. ..+.-... ..-.. ....-|+|.|.+.+++..-++.++|+.|.+..
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~--~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKP--PTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTT--S--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCC--CcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 468999999999999999998887 6665 33431111 11111 12246999999999999999999999998765
Q ss_pred CCCccEEEEeecCC
Q 025677 224 PDSKFLRLQFSRNP 237 (249)
Q Consensus 224 ~~~r~LrV~~ak~~ 237 (249)
....+..|+||-+.
T Consensus 85 g~~~~~~VE~Apyq 98 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQ 98 (176)
T ss_dssp S-EEEEEEEE-SS-
T ss_pred CCCcceeEEEcchh
Confidence 44456788888764
No 124
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.80 E-value=0.035 Score=39.34 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=44.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCC---CCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHH
Q 025677 150 STLYVEGLPADSTKREVAHIFRPF---VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL 214 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~f---G~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~L 214 (249)
.+|+|.++. +++.++|+.+|..| .....|.-+.+. -|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt----------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT----------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC----------cEEEEECCHHHHHHHHHcC
Confidence 589999996 58888999999988 123467777775 4889999999999999765
No 125
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.79 E-value=0.002 Score=65.74 Aligned_cols=78 Identities=21% Similarity=0.222 Sum_probs=64.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
.+.|||++||+..+++.+|+..|..+|.|.+|.|....-+ .---|+||.|.+...+-.|+..+.+..|...
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~----~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g----- 441 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIK----TESAYAFVSLLNTDMTPSAKFEESGPLIGNG----- 441 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCC----cccchhhhhhhccccCcccchhhcCCccccC-----
Confidence 5789999999999999999999999999999988754211 1123999999999999999999999988773
Q ss_pred cEEEEee
Q 025677 228 FLRLQFS 234 (249)
Q Consensus 228 ~LrV~~a 234 (249)
.+++-+.
T Consensus 442 ~~r~glG 448 (975)
T KOG0112|consen 442 THRIGLG 448 (975)
T ss_pred ccccccc
Confidence 3555554
No 126
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.73 E-value=0.011 Score=52.89 Aligned_cols=62 Identities=19% Similarity=0.256 Sum_probs=52.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHc
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 215 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~Ln 215 (249)
..|||.||+.-++.+.|.+-|+.||.|....++.+... ++-+=++|+|...-.|.+|+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~----k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRG----KPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccc----cccccchhhhhcchhHHHHHHHhc
Confidence 68999999999999999999999999987666555443 333478999999999999998874
No 127
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.62 E-value=0.0054 Score=54.68 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=48.7
Q ss_pred HHHHhc-CCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEeec
Q 025677 166 VAHIFR-PFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSR 235 (249)
Q Consensus 166 L~~lF~-~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~LrV~~ak 235 (249)
|...|+ +||+|.++.|-.+...+-.| =++|.|..+++|++|++.||+.-+.+ ++|..+++.
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl~~hl~G----NVYV~f~~Ee~ae~a~~~lnnRw~~G-----~pi~ae~~p 146 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNLGDHLVG----NVYVKFRSEEDAEAALEDLNNRWYNG-----RPIHAELSP 146 (260)
T ss_pred HHHHHHHHhhhhhhhhhhcccchhhhh----hhhhhcccHHHHHHHHHHHcCccccC-----CcceeeecC
Confidence 333344 89999998776655444444 79999999999999999999999999 888888864
No 128
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.57 E-value=0.0091 Score=56.79 Aligned_cols=76 Identities=25% Similarity=0.343 Sum_probs=56.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCC--CCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 150 STLYVEGLPADSTKREVAHIFRPF--VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~f--G~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++||++||.+.++..+|+.+|... +.-..+ |+.. | |+||++.+...|.+|++.++|..-..+ +
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f-l~k~------g----yafvd~pdq~wa~kaie~~sgk~elqG----k 66 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LVKS------G----YAFVDCPDQQWANKAIETLSGKVELQG----K 66 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce-eeec------c----eeeccCCchhhhhhhHHhhchhhhhcC----c
Confidence 579999999999999999999754 111111 2222 3 999999999999999999999754432 6
Q ss_pred cEEEEeecCCCCC
Q 025677 228 FLRLQFSRNPGPR 240 (249)
Q Consensus 228 ~LrV~~ak~~~~r 240 (249)
.+.|.++-.+..|
T Consensus 67 r~e~~~sv~kkqr 79 (584)
T KOG2193|consen 67 RQEVEHSVPKKQR 79 (584)
T ss_pred eeeccchhhHHHH
Confidence 7888877655443
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.23 E-value=0.0043 Score=63.11 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=55.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEe-eCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV-IKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 220 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~-~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~ 220 (249)
..++||.||+..+.+++|...|..++.+..+++. .... ++.+|.|+|+|..++++.+|+...+...+.
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~----~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNE----KRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhc----cccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 3579999999999999999999999998887776 3333 445569999999999999999765544433
No 130
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.19 E-value=0.94 Score=35.64 Aligned_cols=79 Identities=11% Similarity=0.226 Sum_probs=56.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCC-CeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG-~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
..+-+...|..++-++|..+.+.+- .|..++|+.+... .+-.+.+.|.+.+.|.+-.+.+||..+..-.+ ..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-----nrymVLikF~~~~~Ad~Fy~~fNGk~FnslEp--E~ 86 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-----NRYMVLIKFRDQESADEFYEEFNGKPFNSLEP--ET 86 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-----ceEEEEEEECCHHHHHHHHHHhCCCccCCCCC--ce
Confidence 4455556666677778877777664 4567788876432 23489999999999999999999999977554 33
Q ss_pred EEEEeec
Q 025677 229 LRLQFSR 235 (249)
Q Consensus 229 LrV~~ak 235 (249)
.+|-|-+
T Consensus 87 ChvvfV~ 93 (110)
T PF07576_consen 87 CHVVFVK 93 (110)
T ss_pred eEEEEEE
Confidence 5554443
No 131
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.15 E-value=0.13 Score=47.14 Aligned_cols=65 Identities=20% Similarity=0.232 Sum_probs=48.7
Q ss_pred HHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEee
Q 025677 163 KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFS 234 (249)
Q Consensus 163 eeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~LrV~~a 234 (249)
++++.+-+.+||.|..|.|.....- + -+-..--||+|+..++|.+|+--|||..|.+ +.++..|-
T Consensus 300 ede~keEceKyg~V~~viifeip~~-p-~deavRiFveF~r~e~aiKA~VdlnGRyFGG-----r~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQ-P-EDEAVRIFVEFERVESAIKAVVDLNGRYFGG-----RVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCC-c-cchhheeeeeeccHHHHHHHHHhcCCceecc-----eeeeheec
Confidence 4477788999999998877643210 0 0111257999999999999999999999999 77777664
No 132
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.01 E-value=0.11 Score=44.41 Aligned_cols=62 Identities=23% Similarity=0.260 Sum_probs=45.3
Q ss_pred CHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHc--CceeCCCCCCCccEEEEeecCC
Q 025677 162 TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ--GYRMDEDDPDSKFLRLQFSRNP 237 (249)
Q Consensus 162 teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~Ln--G~~i~g~~~~~r~LrV~~ak~~ 237 (249)
..+.|+++|.+++.+.....+..=. =..|.|.+.+.|++|+..|+ +..+.+ ..|+|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr---------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g-----~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR---------RIRVVFESPESAQRARQLLHWDGTSFNG-----KRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT---------EEEEE-SSTTHHHHHHHTST--TSEETT-----EE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC---------EEEEEeCCHHHHHHHHHHhcccccccCC-----CceEEEEcccc
Confidence 4578999999999998877765431 47899999999999999999 999999 77999999643
No 133
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.88 E-value=0.03 Score=51.69 Aligned_cols=82 Identities=18% Similarity=0.347 Sum_probs=61.1
Q ss_pred CcEEEEcCCCCCCCHHH-HH--HHhcCCCCeEEEEEeeCCC--ccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025677 149 SSTLYVEGLPADSTKRE-VA--HIFRPFVGYKEVRLVIKES--KLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 223 (249)
Q Consensus 149 ~~tLfVgnLp~~~teee-L~--~lF~~fG~i~~v~l~~~~~--~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 223 (249)
.+-+||-+|+.....++ |+ +.|.+||.|.+|.+..+.+ ....+-+ -++|+|+..++|..||...+|...++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~--s~yITy~~~eda~rci~~v~g~~~dg-- 152 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC--SVYITYEEEEDADRCIDDVDGFVDDG-- 152 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC--cccccccchHhhhhHHHHhhhHHhhh--
Confidence 36689999998876554 43 5799999999988776442 1122211 27999999999999999999999998
Q ss_pred CCCccEEEEeecCC
Q 025677 224 PDSKFLRLQFSRNP 237 (249)
Q Consensus 224 ~~~r~LrV~~ak~~ 237 (249)
+.|+..+...+
T Consensus 153 ---~~lka~~gttk 163 (327)
T KOG2068|consen 153 ---RALKASLGTTK 163 (327)
T ss_pred ---hhhHHhhCCCc
Confidence 67777776543
No 134
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.87 E-value=0.035 Score=56.72 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=60.3
Q ss_pred EEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEE
Q 025677 152 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRL 231 (249)
Q Consensus 152 LfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~LrV 231 (249)
.++.|.+-..+-..|..+|++||.+.+.+...+-+ .|.|+|...+.|..|+++|+|..+-... -+.+|
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N---------~alvs~~s~~sai~a~dAl~gkevs~~g---~Ps~V 368 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN---------MALVSFSSVESAILALDALQGKEVSVTG---APSRV 368 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc---------chhhhhHHHHHHHHhhhhhcCCcccccC---CceeE
Confidence 34455556677888999999999999999876653 7999999999999999999999876522 57899
Q ss_pred EeecC
Q 025677 232 QFSRN 236 (249)
Q Consensus 232 ~~ak~ 236 (249)
.||+.
T Consensus 369 ~~ak~ 373 (1007)
T KOG4574|consen 369 SFAKT 373 (1007)
T ss_pred Eeccc
Confidence 99985
No 135
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.56 E-value=0.32 Score=40.26 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=52.8
Q ss_pred cEEEEcCCCCCCC-HHHHH---HHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCC
Q 025677 150 STLYVEGLPADST-KREVA---HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 225 (249)
Q Consensus 150 ~tLfVgnLp~~~t-eeeL~---~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~ 225 (249)
.||-|.=|..++. .+||+ .-++.||.|.+|.+.-.. -|.|.|.+..+|=+|+.+++-. ..+
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq----------savVvF~d~~SAC~Av~Af~s~-~pg---- 151 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ----------SAVVVFKDITSACKAVSAFQSR-APG---- 151 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc----------eEEEEehhhHHHHHHHHhhcCC-CCC----
Confidence 6888887776654 34444 456789999999876554 5999999999999999998863 333
Q ss_pred CccEEEEeec
Q 025677 226 SKFLRLQFSR 235 (249)
Q Consensus 226 ~r~LrV~~ak 235 (249)
..++.+|-.
T Consensus 152 -tm~qCsWqq 160 (166)
T PF15023_consen 152 -TMFQCSWQQ 160 (166)
T ss_pred -ceEEeeccc
Confidence 568888853
No 136
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.35 E-value=0.42 Score=47.19 Aligned_cols=64 Identities=14% Similarity=0.239 Sum_probs=53.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcC--CCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHH-------HHcCce
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRP--FVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALS-------ALQGYR 218 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~--fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~-------~LnG~~ 218 (249)
..+.+.+.-||.++..|+++.||+. |-.+++|.+-.+. -.||+|++.++|+.|.+ .++|+.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~----------nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND----------NWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC----------ceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 4577889999999999999999974 7888899887665 27999999999999965 456777
Q ss_pred eCC
Q 025677 219 MDE 221 (249)
Q Consensus 219 i~g 221 (249)
|+.
T Consensus 244 ImA 246 (684)
T KOG2591|consen 244 IMA 246 (684)
T ss_pred hhh
Confidence 766
No 137
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.15 E-value=0.26 Score=49.33 Aligned_cols=62 Identities=13% Similarity=0.068 Sum_probs=53.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 222 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~ 222 (249)
..++||+|+...|..+-++.+...+|-|.++..+. |+|.+|.....+..|+..|.-..+++.
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------------fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------------FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------------hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 47999999999999999999999999887654322 899999999999999999888887773
No 138
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.34 E-value=0.77 Score=33.12 Aligned_cols=59 Identities=20% Similarity=0.325 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHhcCCCCeE-----EEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEe
Q 025677 159 ADSTKREVAHIFRPFVGYK-----EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQF 233 (249)
Q Consensus 159 ~~~teeeL~~lF~~fG~i~-----~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~LrV~~ 233 (249)
..++..+|..++..-.+|. .|+|..+ |+||+-.. +.|+.++++|++..+.+ +.|+|+.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-----------~S~vev~~-~~a~~v~~~l~~~~~~g-----k~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-----------FSFVEVPE-EVAEKVLEALNGKKIKG-----KKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS------------EEEEE-T-T-HHHHHHHHTT--SSS---------EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-----------EEEEEECH-HHHHHHHHHhcCCCCCC-----eeEEEEE
Confidence 3578889999988776654 5555444 89999876 57889999999999999 7888876
Q ss_pred e
Q 025677 234 S 234 (249)
Q Consensus 234 a 234 (249)
|
T Consensus 74 A 74 (74)
T PF03880_consen 74 A 74 (74)
T ss_dssp -
T ss_pred C
Confidence 4
No 139
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=91.03 E-value=0.37 Score=47.29 Aligned_cols=44 Identities=16% Similarity=0.382 Sum_probs=36.4
Q ss_pred ceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEeecCCC
Q 025677 194 LILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSRNPG 238 (249)
Q Consensus 194 kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~LrV~~ak~~~ 238 (249)
.|||||.|.+++++..+.+++||+.++.=. ..+...|.||+..+
T Consensus 431 vGYAFINm~sp~ai~~F~kAFnGk~W~~Fn-S~Kia~itYArIQG 474 (549)
T KOG4660|consen 431 VGYAFINMTSPEAIIRFYKAFNGKKWEKFN-SEKIASITYARIQG 474 (549)
T ss_pred cceeEEeecCHHHHHHHHHHHcCCchhhhc-ceeeeeeehhhhhc
Confidence 359999999999999999999999876533 33788999998654
No 140
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.66 E-value=1.1 Score=44.39 Aligned_cols=85 Identities=16% Similarity=0.248 Sum_probs=63.2
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHHhcCC----CCeEEEEEeeCCCccC-------CCc----------------------
Q 025677 147 DASSTLYVEGLPAD-STKREVAHIFRPF----VGYKEVRLVIKESKLR-------GGD---------------------- 192 (249)
Q Consensus 147 ~~~~tLfVgnLp~~-~teeeL~~lF~~f----G~i~~v~l~~~~~~~~-------~G~---------------------- 192 (249)
..++.|-|.||.|+ +.-++|.-+|+.| |.|.+|.|....-++- .|-
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 35789999999998 7788999999877 5788887764321110 011
Q ss_pred ---------------cceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEee
Q 025677 193 ---------------PLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFS 234 (249)
Q Consensus 193 ---------------~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~LrV~~a 234 (249)
-..||.|+|.+.+.|....+.++|..+.... ..|-+.|-
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~---~~~DLRFI 305 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSA---NKLDLRFI 305 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccc---ceeeeeec
Confidence 1248999999999999999999999998743 34555553
No 141
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.69 E-value=1.7 Score=40.01 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=46.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 222 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~ 222 (249)
..|-|-+.|+.-.. -|..+|++||.|++.... .+ |. |-.|.|.+..+|.+||. .||..|++.
T Consensus 198 ~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~--~n----gN---wMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 198 TWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP--SN----GN---WMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred ceEEEeccCccchh-HHHHHHHhhCeeeeeecC--CC----Cc---eEEEEecchhHHHHhhh-hcCeeeccc
Confidence 44556677765443 455789999999876544 22 21 99999999999999996 588888873
No 142
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=87.65 E-value=0.29 Score=47.31 Aligned_cols=72 Identities=22% Similarity=0.305 Sum_probs=56.9
Q ss_pred cEEEEcCCCCCC-CHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 150 STLYVEGLPADS-TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 150 ~tLfVgnLp~~~-teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+.|-+.-.|+.. |-++|...|.+||.|..|.+-.... -|.|+|.+..+|-+|. +..+..|+. +.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~---------~a~vTF~t~aeag~a~-~s~~avlnn-----r~ 437 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL---------HAVVTFKTRAEAGEAY-ASHGAVLNN-----RF 437 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCchh---------hheeeeeccccccchh-ccccceecC-----ce
Confidence 555566666664 4678999999999999987765421 4899999999997775 578999998 88
Q ss_pred EEEEeecC
Q 025677 229 LRLQFSRN 236 (249)
Q Consensus 229 LrV~~ak~ 236 (249)
|+|-|-+.
T Consensus 438 iKl~whnp 445 (526)
T KOG2135|consen 438 IKLFWHNP 445 (526)
T ss_pred eEEEEecC
Confidence 99999876
No 143
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.59 E-value=2.6 Score=40.75 Aligned_cols=71 Identities=20% Similarity=0.332 Sum_probs=59.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCC-CCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPF-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 224 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~f-G~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 224 (249)
+..|+|--+|-.+|-.||-.+...| -.|.+++++.+.... .-...|.|.+.++|..-.+.+||..|..-++
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn-----rymvLIkFr~q~da~~Fy~efNGk~Fn~le~ 145 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN-----RYMVLIKFRDQADADTFYEEFNGKQFNSLEP 145 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc-----eEEEEEEeccchhHHHHHHHcCCCcCCCCCc
Confidence 6899999999999999999988765 467888998754322 2378999999999999999999999987654
No 144
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=86.41 E-value=3.7 Score=29.38 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=40.3
Q ss_pred CCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025677 160 DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 221 (249)
Q Consensus 160 ~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g 221 (249)
.++-++++..+..|.- . +|..+++ | =||.|.+..+|+++.+..+|..+..
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~t----G-----fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDRT----G-----FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecCC----E-----EEEEECChHHHHHHHHhcCCCEEEE
Confidence 3678899999999853 3 4445554 3 5899999999999999999998876
No 145
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=84.53 E-value=0.59 Score=42.71 Aligned_cols=70 Identities=19% Similarity=0.025 Sum_probs=54.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 221 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g 221 (249)
..++|++++.+++.+.++..+|...|......+...... ..+++++.|.|...+.+..|+.....+.+..
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~---~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~ 157 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDS---LSSKGGLSVHFAGKSQFFAALEESGSKVLDG 157 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccc---cccccceeeccccHHHHHHHHHhhhcccccc
Confidence 578999999999999999999999998877766642211 3455699999999999999996554445444
No 146
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=73.06 E-value=0.18 Score=48.22 Aligned_cols=77 Identities=12% Similarity=0.247 Sum_probs=63.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
.++.+-|.|+|+...++-|..|..+||.+..|..+...+-.. .--|+|.+.+.+..|+..|||..++. .
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta------vvnvty~~~~~~~~ai~kl~g~Q~en-----~ 147 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA------VVNVTYSAQQQHRQAIHKLNGPQLEN-----Q 147 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH------HHHHHHHHHHHHHHHHHhhcchHhhh-----h
Confidence 357799999999999999999999999999887764332110 34588999999999999999999998 6
Q ss_pred cEEEEeec
Q 025677 228 FLRLQFSR 235 (249)
Q Consensus 228 ~LrV~~ak 235 (249)
.++|.|--
T Consensus 148 ~~k~~YiP 155 (584)
T KOG2193|consen 148 HLKVGYIP 155 (584)
T ss_pred hhhcccCc
Confidence 68888864
No 147
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=68.96 E-value=1 Score=42.77 Aligned_cols=65 Identities=17% Similarity=0.118 Sum_probs=52.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 221 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g 221 (249)
..|++|++|+..+...++-++|..+|++...++..+... -+|-|+|........|+. ++|..+.-
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s-------~~c~~sf~~qts~~halr-~~gre~k~ 215 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRS-------SSCSHSFRKQTSSKHALR-SHGRERKR 215 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCC-------cchhhhHhhhhhHHHHHH-hcchhhhh
Confidence 478999999999999999999999999988777654322 278899999888888875 57766654
No 148
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=61.08 E-value=5.5 Score=36.55 Aligned_cols=88 Identities=20% Similarity=0.366 Sum_probs=53.9
Q ss_pred CcEEEEcCCCCC------------CCHHHHHHHhcCCCCeEEEEEee-C------CCccCCCccceEE---------EEE
Q 025677 149 SSTLYVEGLPAD------------STKREVAHIFRPFVGYKEVRLVI-K------ESKLRGGDPLILC---------FVD 200 (249)
Q Consensus 149 ~~tLfVgnLp~~------------~teeeL~~lF~~fG~i~~v~l~~-~------~~~~~~G~~kg~a---------FVe 200 (249)
..|||+.+||.. -+++-|+..|..||.|..|.|.. + ..+.++-+-+||+ ||.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 468888888842 35778999999999999888762 1 1111111233444 355
Q ss_pred eCCHHHHHHHHHHHcCceeC----CCCCCCccEEEEeecCC
Q 025677 201 FENPACAATALSALQGYRMD----EDDPDSKFLRLQFSRNP 237 (249)
Q Consensus 201 F~~~~~A~~Al~~LnG~~i~----g~~~~~r~LrV~~ak~~ 237 (249)
|-....-..|+.+|.|.++. +.--. -.++|+|.++.
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffq-anvkvdfdrsr 268 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQ-ANVKVDFDRSR 268 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccc-cccccccchhh
Confidence 55556667788888876542 21000 24777777653
No 149
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=59.17 E-value=2.5 Score=37.38 Aligned_cols=69 Identities=19% Similarity=0.226 Sum_probs=55.1
Q ss_pred CcEEEEcC----CCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025677 149 SSTLYVEG----LPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 221 (249)
Q Consensus 149 ~~tLfVgn----Lp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g 221 (249)
..+++.|+ |...++++.+.+.|++-+.+..+++.....++.+. +.||++....+.-.|+...++.....
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn----~~~~~~qr~~~~P~~~~~y~~l~~~~ 152 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRN----FGFVTYQRLCAVPFALDLYQGLELFQ 152 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccC----ccchhhhhhhcCcHHhhhhcccCcCC
Confidence 36788888 88889999999999999999999998766544443 89999998877777877776655444
No 150
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=58.42 E-value=52 Score=21.97 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=40.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCH----HHHHHHHHH
Q 025677 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP----ACAATALSA 213 (249)
Q Consensus 151 tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~----~~A~~Al~~ 213 (249)
||.|.|+...-....|++.+...-+|.++.+-.... -+-|+|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~---------~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETK---------TVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTT---------EEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCC---------EEEEEEecCCCCHHHHHHHHHH
Confidence 678889888888889999999999999998865542 678888865 344444443
No 151
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=55.74 E-value=15 Score=30.56 Aligned_cols=63 Identities=25% Similarity=0.267 Sum_probs=42.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHH
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSA 213 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~ 213 (249)
....+++.+++..+++.++..+|..++.+..+.+...... ..+..+.++.+.....+..++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 286 (306)
T COG0724 224 KSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDG---KIPKSRSFVGNEASKDALESNSR 286 (306)
T ss_pred ccceeeccccccccchhHHHHhccccccceeeeccCCCCC---cccccccccchhHHHhhhhhhcc
Confidence 4578999999999999999999999999977766654322 11222444444444444444433
No 152
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=54.24 E-value=9 Score=32.90 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=51.7
Q ss_pred cEEEEcCCCCCCC-----HHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025677 150 STLYVEGLPADST-----KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 224 (249)
Q Consensus 150 ~tLfVgnLp~~~t-----eeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 224 (249)
.++.+.+++.++- ......+|.+|-+.....++... +.--|.|.+++.|+.|...++.+.|.+++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf---------rrvRi~f~~p~~a~~a~i~~~~~~f~~~~- 80 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF---------RRVRINFSNPEAAADARIKLHSTSFNGKN- 80 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh---------ceeEEeccChhHHHHHHHHhhhcccCCCc-
Confidence 5688888887642 22345667766554444444322 15679999999999999999999999942
Q ss_pred CCccEEEEeecC
Q 025677 225 DSKFLRLQFSRN 236 (249)
Q Consensus 225 ~~r~LrV~~ak~ 236 (249)
.++.-|+..
T Consensus 81 ---~~k~yfaQ~ 89 (193)
T KOG4019|consen 81 ---ELKLYFAQP 89 (193)
T ss_pred ---eEEEEEccC
Confidence 577777754
No 153
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=47.93 E-value=8.6 Score=34.34 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=27.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEE
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEV 179 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v 179 (249)
..+||+-|+|..+|++.|..+.+++|-+..+
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 5789999999999999999999998865544
No 154
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=47.87 E-value=3.5 Score=40.85 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=55.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 222 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~ 222 (249)
.++|||.|++++++-.+|..+++.+-.+..+-+.....-+ +-+-+..|+|.-...-..|+.+||+..+...
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek---~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEK---NFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHH---HHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 3679999999999999999999999888777655321100 0112678999998899999999999988763
No 155
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=47.42 E-value=19 Score=28.51 Aligned_cols=51 Identities=14% Similarity=0.216 Sum_probs=27.4
Q ss_pred EEEEcCCCCC---------CCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHH
Q 025677 151 TLYVEGLPAD---------STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACA 207 (249)
Q Consensus 151 tLfVgnLp~~---------~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A 207 (249)
++.|-|++.+ ++.++|.+.|+.|..++ |+.+....++. |++.|+|...-..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~-----g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHT-----GFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEE-----EEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCc-----EEEEEEECCChHH
Confidence 5566677543 35678999999998874 66665554433 4999999986543
No 156
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=47.11 E-value=46 Score=24.44 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=38.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCC--CCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHH
Q 025677 151 TLYVEGLPADSTKREVAHIFRPF--VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSA 213 (249)
Q Consensus 151 tLfVgnLp~~~teeeL~~lF~~f--G~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~ 213 (249)
.-|+-.++.+++..||++.++++ -.+.+|+......+.. =|||++...+.|......
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~K------KA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEK------KAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCce------EEEEEECCCCcHHHHHHh
Confidence 35666788999999999888764 2456666554332211 499999888877766544
No 157
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.39 E-value=25 Score=33.80 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=41.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHH
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALS 212 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~ 212 (249)
..|=|.++|.....+||..+|+.|++ +.++|..-... .||-.|.+...|..||-
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDdt--------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDDT--------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeecc--------eeEEeecchHHHHHHhh
Confidence 56889999999999999999999965 34444432222 69999999999988874
No 158
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=44.10 E-value=69 Score=31.10 Aligned_cols=86 Identities=20% Similarity=0.289 Sum_probs=59.0
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhcCC----CCeEEEEEeeCCCccCC-------C----------------------
Q 025677 146 PDASSTLYVEGLPAD-STKREVAHIFRPF----VGYKEVRLVIKESKLRG-------G---------------------- 191 (249)
Q Consensus 146 ~~~~~tLfVgnLp~~-~teeeL~~lF~~f----G~i~~v~l~~~~~~~~~-------G---------------------- 191 (249)
.++++.|-|-||.|+ +.-.+|.-+|+.| |.+..|.|...+-++.+ |
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 345688999999998 7778999888876 55666665532211100 1
Q ss_pred ----cc-----------------------------ceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEee
Q 025677 192 ----DP-----------------------------LILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFS 234 (249)
Q Consensus 192 ----~~-----------------------------kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~LrV~~a 234 (249)
+. .-||.|++.+.+.+.....+++|..+...- ..+-+.|.
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~sa---n~~DLRfv 295 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSA---NVLDLRFV 295 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCcccccccc---ceeeeeec
Confidence 00 238999999999999999999999887632 34555554
No 159
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=43.85 E-value=52 Score=24.58 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=38.8
Q ss_pred EEEcCCCCCCCHHHHHHHhcCC--CCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHH
Q 025677 152 LYVEGLPADSTKREVAHIFRPF--VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL 214 (249)
Q Consensus 152 LfVgnLp~~~teeeL~~lF~~f--G~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~L 214 (249)
-|+--++.+.+..+|++.++.+ -.|.+|+......+.. =|||.+.....|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~K------KA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEK------KAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcE------EEEEEeCCCCcHHHHHHhh
Confidence 4555678889999988888764 2456666554432222 3999999988887765443
No 160
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=43.65 E-value=30 Score=32.87 Aligned_cols=72 Identities=17% Similarity=0.295 Sum_probs=49.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEE-EEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEV-RLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 222 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v-~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~ 222 (249)
..+-|.+||+..++++|.+-..+|-.-..- .+....... .-.-.+.|+|.|..+++...-...++|+.+...
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~-~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~ 80 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESL-RNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDN 80 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccc-hhhhhhhhhhccccHHHHHHHHhhCCceEEecC
Confidence 678899999999999988877776442221 222111110 011234899999999998888888999998774
No 161
>PF14893 PNMA: PNMA
Probab=42.44 E-value=20 Score=33.50 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFR 171 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~ 171 (249)
.+.|.|.+||.+|+++||++.+.
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~ 40 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQ 40 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHH
Confidence 47899999999999999888754
No 162
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=38.19 E-value=47 Score=30.66 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=55.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCcc----CCCccceEEEEEeCCHHHHHHH----HHHHcCceeC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKL----RGGDPLILCFVDFENPACAATA----LSALQGYRMD 220 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~----~~G~~kg~aFVeF~~~~~A~~A----l~~LnG~~i~ 220 (249)
++.|...||..+++-.++...|-+||.|.+|.++.+.... .--+..-.+.+.|-+.+.+..- ++.|.-++-.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 3678899999999999999999999999999999654100 0011223788999988775443 2333332211
Q ss_pred CCCCCCccEEEEeec
Q 025677 221 EDDPDSKFLRLQFSR 235 (249)
Q Consensus 221 g~~~~~r~LrV~~ak 235 (249)
= .+..|+|+|..
T Consensus 95 L---~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 L---KSESLTLSFVS 106 (309)
T ss_pred c---CCcceeEEEEE
Confidence 1 12568888876
No 163
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=37.10 E-value=1.1e+02 Score=30.98 Aligned_cols=69 Identities=9% Similarity=0.122 Sum_probs=50.6
Q ss_pred cEEEEcCCC--CCCCHHHHHHHhcCCCCeE-----EEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025677 150 STLYVEGLP--ADSTKREVAHIFRPFVGYK-----EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 222 (249)
Q Consensus 150 ~tLfVgnLp--~~~teeeL~~lF~~fG~i~-----~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~ 222 (249)
.++|| |+- ..++..+|..++..-+.|. .|+|..+ |.||+-.. +.|...++.|++..+.+
T Consensus 487 ~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~-----------~s~v~~~~-~~~~~~~~~~~~~~~~~- 552 (629)
T PRK11634 487 QLYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS-----------HSTIELPK-GMPGEVLQHFTRTRILN- 552 (629)
T ss_pred EEEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC-----------ceEEEcCh-hhHHHHHHHhccccccC-
Confidence 45666 333 4588888888887766654 3445443 88999875 56888899999999999
Q ss_pred CCCCccEEEEeecC
Q 025677 223 DPDSKFLRLQFSRN 236 (249)
Q Consensus 223 ~~~~r~LrV~~ak~ 236 (249)
+.|.|+.++.
T Consensus 553 ----~~~~~~~~~~ 562 (629)
T PRK11634 553 ----KPMNMQLLGD 562 (629)
T ss_pred ----CceEEEECCC
Confidence 7799998753
No 164
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=33.51 E-value=73 Score=22.55 Aligned_cols=20 Identities=10% Similarity=0.105 Sum_probs=15.9
Q ss_pred HHHHHHhcCCCCeEEEEEee
Q 025677 164 REVAHIFRPFVGYKEVRLVI 183 (249)
Q Consensus 164 eeL~~lF~~fG~i~~v~l~~ 183 (249)
++|+++|++.|.|.-+-+..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 57999999999997655543
No 165
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.17 E-value=8.9 Score=37.20 Aligned_cols=78 Identities=9% Similarity=-0.148 Sum_probs=57.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 229 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 229 (249)
...|+..||...++.++.-+|..+|-|..+.+.....+ |..+..+||+-.. ++|..+++.+.-..+.+ ..+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~---~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~-----~~~ 74 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNG---SLGEVTPFQHAKK-ANGPNYIQPQKRQTTFE-----SQD 74 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccC---Ccceeeeeeeeec-cCcccccCHHHHhhhhh-----hhh
Confidence 45677889999999999999999998887776655433 5556788988765 56677777666666666 457
Q ss_pred EEEeecC
Q 025677 230 RLQFSRN 236 (249)
Q Consensus 230 rV~~ak~ 236 (249)
++..++.
T Consensus 75 r~~~~~~ 81 (572)
T KOG4365|consen 75 RKAVSPS 81 (572)
T ss_pred hhhcCch
Confidence 7777654
No 166
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=31.37 E-value=1.1e+02 Score=28.27 Aligned_cols=49 Identities=18% Similarity=0.275 Sum_probs=35.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHH
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPAC 206 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~ 206 (249)
.-|||+||+.++.-.||+..+.+-+.+ -.+|..+- +. | -||+.|.+...
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg--~~-~----k~flh~~~~~~ 379 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKG--HF-G----KCFLHFGNRKG 379 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC-ceeEeeec--CC-c----ceeEecCCccC
Confidence 459999999999999999988876653 23444332 11 2 69999988543
No 167
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=31.09 E-value=31 Score=26.02 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=18.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHH
Q 025677 149 SSTLYVEGLPADSTKREVAHI 169 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~l 169 (249)
.+||.|.|||...++++|++.
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred CCEEEEeCCCCCCChhhheee
Confidence 478999999999999999864
No 168
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=30.33 E-value=33 Score=21.68 Aligned_cols=17 Identities=12% Similarity=0.362 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHhcCCCC
Q 025677 159 ADSTKREVAHIFRPFVG 175 (249)
Q Consensus 159 ~~~teeeL~~lF~~fG~ 175 (249)
.++++++|+++|.+...
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 36889999999998653
No 169
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=23.84 E-value=2.6e+02 Score=19.56 Aligned_cols=46 Identities=24% Similarity=0.398 Sum_probs=37.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCH
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP 204 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~ 204 (249)
.+|.|.++...-....+........++.++.+-... + -++|+|++.
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~-----~----~~~V~~d~~ 49 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEK-----G----TATVTFDSN 49 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEccc-----C----eEEEEEcCC
Confidence 578899988888888999999999889888887654 2 589999983
No 170
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=22.43 E-value=1e+02 Score=31.96 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=27.8
Q ss_pred eEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEeecCC
Q 025677 195 ILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSRNP 237 (249)
Q Consensus 195 g~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~LrV~~ak~~ 237 (249)
+.|||+|++...|+.|.+..+...... ..++||-.|
T Consensus 306 ~~aFVtf~sr~~A~~~aq~~~~~~~~~-------w~~~~APeP 341 (728)
T KOG1134|consen 306 PAAFVTFKSRYGAAVAAQTQQSLNPTK-------WLTEFAPEP 341 (728)
T ss_pred ceEEEEEEeeHHHHHHHHhhhcCCCCc-------eEEEecCCc
Confidence 499999999999999998755544443 778887654
No 171
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=22.21 E-value=70 Score=31.83 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=30.1
Q ss_pred EEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEeecC
Q 025677 196 LCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSRN 236 (249)
Q Consensus 196 ~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~LrV~~ak~ 236 (249)
++++.|+++..+.+|++.++|..... ..++++.++.
T Consensus 65 ~~~~~~et~~~~~ka~~~v~g~~~k~-----~~~~~~~~~~ 100 (534)
T KOG2187|consen 65 YAYVTFETPSDAGKAINLVDGLLYKG-----FILRVQLGAT 100 (534)
T ss_pred ceEEEEeccchhhhHHHHHhhhhhhc-----chhhhhhccc
Confidence 99999999999999999999998887 4566655543
Done!