Query 025677
Match_columns 249
No_of_seqs 323 out of 1382
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 15:13:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dnz_A Probable RNA-binding pr 99.9 4.5E-21 1.6E-25 143.1 13.3 89 148-244 4-92 (95)
2 4fxv_A ELAV-like protein 1; RN 99.9 1.9E-21 6.5E-26 148.1 11.3 80 149-236 19-98 (99)
3 1x5u_A Splicing factor 3B subu 99.8 1.2E-20 4E-25 143.5 12.8 91 148-246 14-104 (105)
4 2d9p_A Polyadenylate-binding p 99.8 2.6E-20 9E-25 141.3 14.0 86 147-242 13-98 (103)
5 2dng_A Eukaryotic translation 99.8 2.8E-20 9.5E-25 141.3 13.3 92 145-246 11-102 (103)
6 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.5E-20 5E-25 142.3 11.5 88 148-243 11-98 (102)
7 2dgs_A DAZ-associated protein 99.8 3.8E-20 1.3E-24 139.4 13.3 88 148-244 9-96 (99)
8 1x5s_A Cold-inducible RNA-bind 99.8 1.8E-20 6.2E-25 141.8 11.4 85 149-241 12-96 (102)
9 2cq0_A Eukaryotic translation 99.8 3.9E-20 1.3E-24 140.3 13.3 86 148-241 14-99 (103)
10 2cpz_A CUG triplet repeat RNA- 99.8 3.3E-20 1.1E-24 143.5 12.9 86 148-241 24-109 (115)
11 1x4a_A Splicing factor, argini 99.8 4.7E-20 1.6E-24 141.4 13.5 83 148-241 21-103 (109)
12 2cpe_A RNA-binding protein EWS 99.8 3.4E-20 1.2E-24 142.9 12.5 87 148-242 14-108 (113)
13 2dnm_A SRP46 splicing factor; 99.8 3.2E-20 1.1E-24 140.8 12.0 86 148-241 12-97 (103)
14 3s8s_A Histone-lysine N-methyl 99.8 3.6E-20 1.2E-24 143.8 12.1 81 149-237 6-86 (110)
15 2do4_A Squamous cell carcinoma 99.8 8.4E-20 2.9E-24 137.8 13.7 84 148-240 16-99 (100)
16 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.8E-20 2.3E-24 139.0 13.3 84 148-241 14-97 (103)
17 2cph_A RNA binding motif prote 99.8 6.8E-20 2.3E-24 139.5 13.2 86 148-241 14-101 (107)
18 2la6_A RNA-binding protein FUS 99.8 5.2E-20 1.8E-24 138.8 12.2 84 144-235 8-99 (99)
19 1x5t_A Splicing factor 3B subu 99.8 2.1E-20 7.3E-25 139.7 10.0 86 149-242 5-91 (96)
20 2cq3_A RNA-binding protein 9; 99.8 1.2E-19 4.2E-24 137.6 14.3 84 148-241 14-97 (103)
21 1whw_A Hypothetical protein ri 99.8 6.1E-20 2.1E-24 138.1 12.5 86 148-241 7-92 (99)
22 1u6f_A Tcubp1, RNA-binding pro 99.8 7.5E-20 2.6E-24 145.9 13.7 88 146-241 39-126 (139)
23 1x4h_A RNA-binding protein 28; 99.8 8.7E-20 3E-24 139.8 13.4 86 148-241 14-105 (111)
24 2dgp_A Bruno-like 4, RNA bindi 99.8 3.7E-20 1.2E-24 141.0 10.8 86 148-241 12-100 (106)
25 3ex7_B RNA-binding protein 8A; 99.8 2.8E-20 9.5E-25 146.0 10.5 83 148-238 21-103 (126)
26 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.2E-20 1.5E-24 135.5 10.8 82 148-237 5-86 (87)
27 2dgv_A HnRNP M, heterogeneous 99.8 5.6E-20 1.9E-24 136.3 11.5 83 148-240 7-89 (92)
28 4f25_A Polyadenylate-binding p 99.8 3.4E-20 1.2E-24 144.3 10.7 82 149-240 5-86 (115)
29 2cqc_A Arginine/serine-rich sp 99.8 8.7E-20 3E-24 135.9 12.3 81 148-236 14-94 (95)
30 2cpi_A CCR4-NOT transcription 99.8 7.1E-20 2.4E-24 141.4 12.2 87 148-239 14-103 (111)
31 2div_A TRNA selenocysteine ass 99.8 4E-20 1.4E-24 139.1 10.3 85 148-240 8-97 (99)
32 2cpf_A RNA binding motif prote 99.8 6.8E-20 2.3E-24 137.6 11.3 87 149-240 5-91 (98)
33 2do0_A HnRNP M, heterogeneous 99.8 2.4E-19 8.1E-24 138.2 14.6 83 149-240 15-97 (114)
34 2dnh_A Bruno-like 5, RNA bindi 99.8 2.4E-19 8.3E-24 136.2 14.4 87 148-240 14-100 (105)
35 2lkz_A RNA-binding protein 5; 99.8 1.8E-20 6.1E-25 142.2 7.6 80 149-236 9-94 (95)
36 2dgo_A Cytotoxic granule-assoc 99.8 1.5E-19 5.3E-24 139.6 13.1 85 148-240 14-98 (115)
37 2e5h_A Zinc finger CCHC-type a 99.8 1E-19 3.5E-24 135.4 11.6 79 149-235 16-94 (94)
38 2fc8_A NCL protein; structure 99.8 1.8E-19 6.3E-24 136.2 13.0 88 148-246 14-101 (102)
39 3mdf_A Peptidyl-prolyl CIS-tra 99.8 7.4E-20 2.5E-24 133.6 10.0 80 148-235 6-85 (85)
40 1wi8_A EIF-4B, eukaryotic tran 99.8 1.7E-19 5.8E-24 137.2 12.4 90 145-243 11-100 (104)
41 1p27_B RNA-binding protein 8A; 99.8 1E-19 3.6E-24 138.4 10.9 84 148-239 22-105 (106)
42 3md1_A Nuclear and cytoplasmic 99.8 2.1E-19 7.1E-24 130.6 12.0 80 150-237 2-81 (83)
43 2lxi_A RNA-binding protein 10; 99.8 1.3E-20 4.5E-25 141.1 5.3 82 149-238 1-84 (91)
44 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.9E-19 6.6E-24 146.5 12.6 84 148-239 38-121 (156)
45 2x1f_A MRNA 3'-END-processing 99.8 1.4E-19 4.9E-24 135.7 10.8 82 149-238 2-83 (96)
46 2ywk_A Putative RNA-binding pr 99.8 1.2E-19 4.1E-24 135.3 10.3 80 148-236 15-94 (95)
47 2fy1_A RNA-binding motif prote 99.8 2E-19 6.9E-24 140.3 12.1 82 148-238 6-87 (116)
48 2khc_A Testis-specific RNP-typ 99.8 1.4E-19 4.8E-24 140.4 11.1 80 148-235 39-118 (118)
49 4a8x_A RNA-binding protein wit 99.8 1.4E-19 4.8E-24 132.7 10.1 85 149-240 4-88 (88)
50 2kxn_B Transformer-2 protein h 99.8 1.5E-19 5E-24 144.0 11.0 85 148-240 45-129 (129)
51 1oo0_B CG8781-PA, drosophila Y 99.8 1.6E-19 5.4E-24 138.5 10.1 85 148-240 25-109 (110)
52 3ulh_A THO complex subunit 4; 99.8 3.6E-19 1.2E-23 135.7 11.8 80 148-236 28-107 (107)
53 2dh8_A DAZ-associated protein 99.8 2.6E-19 8.9E-24 136.2 11.0 86 148-242 15-100 (105)
54 3p5t_L Cleavage and polyadenyl 99.8 4.8E-20 1.7E-24 137.0 6.6 83 150-240 2-86 (90)
55 2dnq_A RNA-binding protein 4B; 99.8 5.9E-19 2E-23 130.8 12.4 79 148-242 7-85 (90)
56 2dhg_A TRNA selenocysteine ass 99.8 2.9E-19 1E-23 135.5 10.9 83 148-239 8-92 (104)
57 1wez_A HnRNP H', FTP-3, hetero 99.8 3.3E-19 1.1E-23 136.4 11.1 82 149-241 15-96 (102)
58 2dgt_A RNA-binding protein 30; 99.8 6.3E-19 2.2E-23 131.1 12.1 79 148-242 9-87 (92)
59 1x4e_A RNA binding motif, sing 99.8 7.6E-20 2.6E-24 133.9 6.9 81 148-236 4-84 (85)
60 2jrs_A RNA-binding protein 39; 99.8 4.9E-19 1.7E-23 136.5 11.8 82 148-237 25-106 (108)
61 2err_A Ataxin-2-binding protei 99.8 2.7E-19 9.2E-24 137.9 9.6 81 147-237 27-107 (109)
62 1x4b_A Heterogeneous nuclear r 99.8 3.8E-19 1.3E-23 137.8 10.4 86 148-242 26-111 (116)
63 2cqp_A RNA-binding protein 12; 99.8 2.8E-19 9.5E-24 134.2 9.3 81 149-237 15-95 (98)
64 2dgx_A KIAA0430 protein; RRM d 99.8 6.1E-19 2.1E-23 132.7 11.0 82 148-240 8-93 (96)
65 1wf1_A RNA-binding protein RAL 99.8 6.7E-19 2.3E-23 135.3 11.3 83 148-246 26-109 (110)
66 2cqg_A TDP-43, TAR DNA-binding 99.8 1.9E-18 6.4E-23 131.0 13.5 83 148-240 14-96 (103)
67 1x4c_A Splicing factor, argini 99.8 1.6E-18 5.4E-23 133.1 13.1 81 149-239 15-95 (108)
68 2cpd_A Apobec-1 stimulating pr 99.8 2.2E-18 7.5E-23 129.8 13.6 77 148-240 14-92 (99)
69 2cqd_A RNA-binding region cont 99.8 1.5E-18 5.2E-23 134.4 12.9 81 148-237 16-96 (116)
70 2fc9_A NCL protein; structure 99.8 1.4E-18 4.9E-23 131.2 12.3 82 148-241 14-95 (101)
71 2cq1_A PTB-like protein L; RRM 99.8 2.8E-18 9.5E-23 131.6 13.9 79 148-240 14-94 (101)
72 1rk8_A CG8781-PA, CG8781-PA pr 99.8 6.6E-19 2.3E-23 145.0 11.1 86 148-241 71-156 (165)
73 2dgw_A Probable RNA-binding pr 99.8 1.4E-18 4.7E-23 128.9 11.8 80 148-238 9-88 (91)
74 2cpj_A Non-POU domain-containi 99.8 1.5E-18 5.3E-23 130.7 12.3 80 148-241 14-93 (99)
75 2cq4_A RNA binding motif prote 99.8 2.3E-19 8E-24 138.5 7.9 81 148-237 24-104 (114)
76 2m2b_A RNA-binding protein 10; 99.8 3.2E-19 1.1E-23 141.6 8.9 85 147-240 21-111 (131)
77 1x4d_A Matrin 3; structural ge 99.8 6.8E-19 2.3E-23 135.5 10.4 76 148-237 14-92 (102)
78 3ucg_A Polyadenylate-binding p 99.8 7.1E-19 2.4E-23 129.4 10.0 81 149-238 6-86 (89)
79 3r27_A HnRNP L, heterogeneous 99.8 6.9E-19 2.3E-23 135.2 10.2 76 148-237 20-97 (100)
80 1wex_A Hypothetical protein (r 99.8 2.1E-18 7E-23 132.9 12.5 79 148-240 14-94 (104)
81 1why_A Hypothetical protein ri 99.8 1.4E-18 4.7E-23 130.5 11.3 78 149-240 17-96 (97)
82 1x5o_A RNA binding motif, sing 99.8 3.2E-18 1.1E-22 131.9 13.6 86 148-237 24-112 (114)
83 2dnp_A RNA-binding protein 14; 99.8 1.3E-18 4.3E-23 129.0 10.5 80 148-243 8-87 (90)
84 2cpx_A Hypothetical protein FL 99.8 1.7E-18 5.7E-23 133.6 11.6 85 146-242 22-110 (115)
85 2ek1_A RNA-binding protein 12; 99.8 3.8E-19 1.3E-23 132.6 7.7 80 149-236 15-94 (95)
86 2jwn_A Embryonic polyadenylate 99.8 1.1E-18 3.6E-23 136.6 10.3 82 149-239 36-117 (124)
87 1sjq_A Polypyrimidine tract-bi 99.8 6E-19 2E-23 136.6 8.7 79 148-240 15-95 (105)
88 2a3j_A U1 small nuclear ribonu 99.8 8.3E-19 2.8E-23 139.8 9.4 80 148-238 28-111 (127)
89 3s7r_A Heterogeneous nuclear r 99.8 2.3E-18 7.7E-23 126.5 11.1 78 148-234 10-87 (87)
90 1p1t_A Cleavage stimulation fa 99.8 3.6E-19 1.2E-23 134.8 6.9 82 149-238 8-89 (104)
91 3lqv_A PRE-mRNA branch site pr 99.8 1.7E-18 5.8E-23 133.7 10.7 82 145-237 4-85 (115)
92 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4E-19 1.4E-23 134.7 6.9 83 146-237 16-98 (100)
93 2kn4_A Immunoglobulin G-bindin 99.8 2.1E-18 7.2E-23 140.1 11.5 86 148-241 69-154 (158)
94 2nlw_A Eukaryotic translation 99.8 1.1E-18 3.7E-23 133.5 8.9 79 148-236 14-99 (105)
95 2cqh_A IGF-II mRNA-binding pro 99.8 1.7E-18 5.7E-23 128.9 9.3 81 148-243 7-89 (93)
96 3ns6_A Eukaryotic translation 99.8 7.1E-19 2.4E-23 133.5 7.3 81 149-236 6-92 (100)
97 3n9u_C Cleavage and polyadenyl 99.8 1.7E-18 5.7E-23 142.4 10.1 80 149-236 55-136 (156)
98 2dgu_A Heterogeneous nuclear r 99.8 4.3E-18 1.5E-22 129.3 11.6 74 149-238 11-84 (103)
99 2rs2_A Musashi-1, RNA-binding 99.8 2.1E-18 7.2E-23 133.0 9.9 84 147-239 23-106 (109)
100 2ad9_A Polypyrimidine tract-bi 99.8 4.8E-18 1.6E-22 134.3 12.1 80 148-241 30-111 (119)
101 2ytc_A PRE-mRNA-splicing facto 99.8 3.1E-18 1E-22 125.1 10.0 73 149-235 12-85 (85)
102 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 4.4E-18 1.5E-22 135.0 11.3 78 149-234 63-140 (140)
103 2lea_A Serine/arginine-rich sp 99.8 9.1E-19 3.1E-23 140.3 7.2 85 148-240 46-130 (135)
104 1nu4_A U1A RNA binding domain; 99.8 1.4E-18 4.7E-23 130.0 7.8 80 148-238 7-90 (97)
105 1fjc_A Nucleolin RBD2, protein 99.8 2E-18 6.8E-23 129.1 8.6 80 148-240 15-94 (96)
106 2kt5_A RNA and export factor-b 99.8 2.8E-17 9.6E-22 128.7 15.6 84 147-239 33-116 (124)
107 2hvz_A Splicing factor, argini 99.8 2.3E-18 7.9E-23 130.0 8.5 78 150-240 1-78 (101)
108 2lcw_A RNA-binding protein FUS 99.6 7.2E-20 2.5E-24 142.0 0.0 84 149-240 7-98 (116)
109 1wel_A RNA-binding protein 12; 99.7 2E-18 6.9E-23 135.6 8.0 81 146-236 22-103 (124)
110 2dis_A Unnamed protein product 99.7 2.5E-18 8.7E-23 131.4 8.3 82 149-238 8-93 (109)
111 2db1_A Heterogeneous nuclear r 99.7 4.3E-18 1.5E-22 133.1 9.7 79 148-236 16-97 (118)
112 1wg5_A Heterogeneous nuclear r 99.7 1.3E-17 4.3E-22 127.3 12.0 82 148-239 14-96 (104)
113 2mss_A Protein (musashi1); RNA 99.7 1.5E-18 5E-23 124.1 6.4 75 151-234 1-75 (75)
114 2e5i_A Heterogeneous nuclear r 99.7 1.3E-17 4.6E-22 132.6 12.5 77 150-238 26-103 (124)
115 1x4g_A Nucleolysin TIAR; struc 99.7 9E-18 3.1E-22 128.8 11.1 78 148-239 24-101 (109)
116 2e5j_A Methenyltetrahydrofolat 99.7 8.6E-18 2.9E-22 126.3 10.3 79 148-239 18-96 (97)
117 2krb_A Eukaryotic translation 99.7 1.6E-18 5.5E-23 126.1 6.1 72 150-231 2-80 (81)
118 1s79_A Lupus LA protein; RRM, 99.7 4.1E-18 1.4E-22 130.7 8.6 78 149-236 11-88 (103)
119 3egn_A RNA-binding protein 40; 99.7 3.6E-18 1.2E-22 137.0 8.6 85 147-242 43-135 (143)
120 2xnq_A Nuclear polyadenylated 99.7 1E-17 3.5E-22 126.5 10.6 75 147-237 20-95 (97)
121 4f02_A Polyadenylate-binding p 99.7 8.2E-18 2.8E-22 143.3 11.2 85 145-237 11-95 (213)
122 2kvi_A Nuclear polyadenylated 99.7 6.7E-18 2.3E-22 126.8 9.4 75 148-238 9-84 (96)
123 2cpy_A RNA-binding protein 12; 99.7 5.7E-18 1.9E-22 131.3 9.2 80 148-237 14-94 (114)
124 2jvo_A Nucleolar protein 3; nu 99.7 1.2E-17 4E-22 128.8 10.6 77 148-240 30-106 (108)
125 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.2E-18 7.4E-23 123.5 6.0 76 150-234 1-76 (77)
126 1x5p_A Negative elongation fac 99.7 5.1E-17 1.7E-21 122.0 13.4 78 148-241 14-91 (97)
127 2ki2_A SS-DNA binding protein 99.7 9E-19 3.1E-23 129.5 3.7 80 150-238 2-81 (90)
128 3q2s_C Cleavage and polyadenyl 99.7 5.3E-18 1.8E-22 147.4 8.8 80 148-235 67-148 (229)
129 2la4_A Nuclear and cytoplasmic 99.7 7.7E-18 2.6E-22 127.1 8.5 74 149-236 27-100 (101)
130 2jvr_A Nucleolar protein 3; RN 99.7 5E-18 1.7E-22 132.4 7.5 79 148-238 27-106 (111)
131 1fj7_A Nucleolin RBD1, protein 99.7 1.4E-18 4.9E-23 131.2 4.2 83 148-241 16-99 (101)
132 1x4f_A Matrin 3; structural ge 99.7 2E-17 6.7E-22 129.4 10.7 76 148-237 24-102 (112)
133 2hgl_A HNRPF protein, heteroge 99.7 8.5E-18 2.9E-22 135.5 8.8 78 149-236 44-124 (136)
134 2f3j_A RNA and export factor b 99.7 5.9E-17 2E-21 135.6 13.7 82 147-237 86-167 (177)
135 1wg1_A KIAA1579 protein, homol 99.7 1.8E-17 6E-22 122.6 8.7 74 149-237 5-78 (88)
136 2wbr_A GW182, gawky, LD47780P; 99.7 1.6E-17 5.3E-22 124.8 8.4 73 149-235 7-79 (89)
137 1whx_A Hypothetical protein ri 99.7 1.9E-17 6.5E-22 128.1 9.1 75 149-237 10-84 (111)
138 3md3_A Nuclear and cytoplasmic 99.7 1E-16 3.5E-21 128.7 12.9 81 148-236 86-166 (166)
139 1fxl_A Paraneoplastic encephal 99.7 6.8E-17 2.3E-21 129.9 11.7 82 149-238 2-83 (167)
140 2e5g_A U6 snRNA-specific termi 99.7 6.7E-17 2.3E-21 120.7 10.8 77 149-239 8-84 (94)
141 3beg_B Splicing factor, argini 99.7 3.2E-17 1.1E-21 127.5 9.0 79 149-237 16-94 (115)
142 3zzy_A Polypyrimidine tract-bi 99.7 5.3E-17 1.8E-21 130.2 10.2 77 150-237 29-106 (130)
143 2i2y_A Fusion protein consists 99.7 5.3E-17 1.8E-21 131.2 10.3 78 148-238 72-149 (150)
144 1b7f_A Protein (SXL-lethal pro 99.7 5.8E-17 2E-21 130.9 10.4 82 149-238 3-84 (168)
145 3pgw_S U1-70K; protein-RNA com 99.7 7E-17 2.4E-21 152.8 12.6 82 148-237 101-182 (437)
146 1sjr_A Polypyrimidine tract-bi 99.7 4E-17 1.4E-21 135.7 9.4 79 149-237 46-124 (164)
147 2e44_A Insulin-like growth fac 99.7 6.5E-17 2.2E-21 120.7 9.0 78 148-237 14-92 (96)
148 1iqt_A AUF1, heterogeneous nuc 99.7 8.2E-18 2.8E-22 120.0 3.8 75 151-234 1-75 (75)
149 2yh0_A Splicing factor U2AF 65 99.7 1.3E-16 4.6E-21 132.2 11.7 86 147-240 112-197 (198)
150 2qfj_A FBP-interacting repress 99.7 1.5E-16 5.2E-21 133.6 12.1 82 149-238 125-206 (216)
151 2lmi_A GRSF-1, G-rich sequence 99.7 2.4E-17 8.2E-22 126.4 6.3 79 148-236 10-91 (107)
152 2g4b_A Splicing factor U2AF 65 99.7 1.7E-16 5.9E-21 128.7 11.3 79 149-235 94-172 (172)
153 2dnn_A RNA-binding protein 12; 99.7 9.3E-17 3.2E-21 124.7 9.1 77 149-236 16-92 (109)
154 2xs2_A Deleted in azoospermia- 99.7 2.8E-17 9.4E-22 124.3 6.0 78 149-237 9-86 (102)
155 2hgn_A Heterogeneous nuclear r 99.7 1.5E-17 5.1E-22 134.6 4.6 80 149-239 46-125 (139)
156 2cq2_A Hypothetical protein LO 99.7 7.7E-17 2.6E-21 126.5 8.4 80 148-237 24-106 (114)
157 1l3k_A Heterogeneous nuclear r 99.7 1.6E-16 5.6E-21 131.5 10.8 82 149-239 104-185 (196)
158 4f02_A Polyadenylate-binding p 99.7 1.3E-16 4.5E-21 135.8 10.4 79 149-237 103-181 (213)
159 3md3_A Nuclear and cytoplasmic 99.7 1.4E-16 4.9E-21 127.8 10.0 81 150-239 1-81 (166)
160 2dha_A FLJ20171 protein; RRM d 99.7 4.7E-17 1.6E-21 129.0 6.1 77 149-235 23-103 (123)
161 3nmr_A Cugbp ELAV-like family 99.7 2.6E-16 8.9E-21 127.6 10.4 81 149-235 95-175 (175)
162 2dnl_A Cytoplasmic polyadenyla 99.7 1.5E-16 5E-21 123.3 8.2 70 149-219 8-80 (114)
163 1l3k_A Heterogeneous nuclear r 99.7 2.5E-16 8.7E-21 130.3 10.0 81 148-237 12-92 (196)
164 3tyt_A Heterogeneous nuclear r 99.7 3.1E-16 1E-20 133.9 10.6 76 149-237 4-80 (205)
165 1b7f_A Protein (SXL-lethal pro 99.7 8.3E-16 2.9E-20 124.0 12.5 80 149-234 89-168 (168)
166 2bz2_A Negative elongation fac 99.7 4.5E-16 1.5E-20 122.5 9.9 77 147-239 37-113 (121)
167 2hgm_A HNRPF protein, heteroge 99.6 2.6E-16 9E-21 125.3 8.2 77 149-236 42-120 (126)
168 1wf0_A TDP-43, TAR DNA-binding 99.6 2E-16 6.9E-21 116.5 6.9 75 149-240 5-81 (88)
169 3d2w_A TAR DNA-binding protein 99.6 5.9E-16 2E-20 115.3 9.4 76 148-238 10-85 (89)
170 3nmr_A Cugbp ELAV-like family 99.6 7.8E-16 2.7E-20 124.7 11.0 87 149-238 3-89 (175)
171 2diu_A KIAA0430 protein; struc 99.6 4.6E-16 1.6E-20 118.1 8.8 71 149-237 8-84 (96)
172 1fxl_A Paraneoplastic encephal 99.6 9E-16 3.1E-20 123.3 10.9 80 149-234 88-167 (167)
173 2cjk_A Nuclear polyadenylated 99.6 2.8E-16 9.5E-21 126.9 7.3 80 149-237 87-166 (167)
174 3pgw_A U1-A; protein-RNA compl 99.6 1.1E-15 3.9E-20 134.2 11.8 80 148-238 8-91 (282)
175 2qfj_A FBP-interacting repress 99.6 6.8E-16 2.3E-20 129.6 9.9 81 149-237 28-108 (216)
176 2hzc_A Splicing factor U2AF 65 99.6 5.5E-16 1.9E-20 113.3 7.1 71 148-233 5-86 (87)
177 3pgw_A U1-A; protein-RNA compl 99.6 6E-15 2E-19 129.6 13.2 76 148-236 206-282 (282)
178 2voo_A Lupus LA protein; RNA-b 99.6 3.5E-15 1.2E-19 126.3 10.2 79 149-237 109-187 (193)
179 2adc_A Polypyrimidine tract-bi 99.6 2.5E-15 8.7E-20 129.1 9.1 77 148-237 33-110 (229)
180 1fje_B Nucleolin RBD12, protei 99.6 4.8E-15 1.7E-19 120.8 10.3 77 148-237 98-174 (175)
181 2j8a_A Histone-lysine N-methyl 99.6 1.9E-15 6.4E-20 121.1 7.5 79 150-236 3-95 (136)
182 2pe8_A Splicing factor 45; RRM 99.6 8.1E-15 2.8E-19 112.9 10.6 82 148-236 7-93 (105)
183 2cjk_A Nuclear polyadenylated 99.6 2.4E-15 8.2E-20 121.4 7.9 78 149-236 3-80 (167)
184 3u1l_A PRE-mRNA-splicing facto 99.6 2.2E-15 7.6E-20 132.3 8.3 76 148-237 133-229 (240)
185 3smz_A Protein raver-1, ribonu 99.6 5.1E-15 1.7E-19 130.2 10.3 83 148-239 183-266 (284)
186 3tyt_A Heterogeneous nuclear r 99.6 2.6E-15 8.8E-20 128.1 7.9 80 149-234 123-204 (205)
187 1qm9_A Polypyrimidine tract-bi 99.6 1E-14 3.5E-19 121.5 10.7 77 148-237 119-197 (198)
188 2adc_A Polypyrimidine tract-bi 99.6 1.8E-14 6E-19 123.8 11.7 77 148-237 150-228 (229)
189 1qm9_A Polypyrimidine tract-bi 99.5 7.1E-15 2.4E-19 122.5 7.5 76 149-237 3-79 (198)
190 2dit_A HIV TAT specific factor 99.5 6.9E-14 2.4E-18 107.9 12.0 78 148-237 14-102 (112)
191 3smz_A Protein raver-1, ribonu 99.5 2.7E-14 9.3E-19 125.5 10.8 82 149-238 95-176 (284)
192 1fje_B Nucleolin RBD12, protei 99.5 4E-15 1.4E-19 121.3 4.1 82 147-238 11-92 (175)
193 2ghp_A U4/U6 snRNA-associated 99.5 2E-14 6.7E-19 126.9 8.2 82 148-237 209-291 (292)
194 3sde_A Paraspeckle component 1 99.5 4.5E-14 1.5E-18 123.7 10.4 75 148-236 21-95 (261)
195 3sde_A Paraspeckle component 1 99.5 8.7E-14 3E-18 121.9 10.3 83 149-237 96-179 (261)
196 2g4b_A Splicing factor U2AF 65 99.5 7.3E-14 2.5E-18 113.1 8.3 75 149-238 4-89 (172)
197 2yh0_A Splicing factor U2AF 65 99.5 1.1E-13 3.9E-18 114.4 8.8 74 149-237 4-88 (198)
198 3v4m_A Splicing factor U2AF 65 99.5 1.4E-13 4.7E-18 105.8 8.6 82 149-236 5-96 (105)
199 1jmt_A Splicing factor U2AF 35 99.5 2E-14 6.8E-19 110.3 3.6 73 153-234 19-103 (104)
200 2d9o_A DNAJ (HSP40) homolog, s 99.5 4.1E-13 1.4E-17 102.6 10.8 76 150-240 11-93 (100)
201 2ghp_A U4/U6 snRNA-associated 99.5 1.1E-13 3.8E-18 122.1 8.5 81 149-238 117-198 (292)
202 3tht_A Alkylated DNA repair pr 99.4 2E-13 6.9E-18 125.6 9.5 81 146-235 15-97 (345)
203 3ue2_A Poly(U)-binding-splicin 99.4 5.1E-13 1.7E-17 105.0 10.2 84 148-236 19-108 (118)
204 3s6e_A RNA-binding protein 39; 99.3 3.1E-11 1E-15 94.3 10.1 78 146-235 4-91 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.1 1.2E-10 4.1E-15 87.5 8.3 72 150-238 8-87 (91)
206 1owx_A Lupus LA protein, SS-B, 99.1 2.9E-10 9.9E-15 89.8 9.2 72 149-234 18-93 (121)
207 1ufw_A Synaptojanin 2; RNP dom 98.9 9.7E-10 3.3E-14 83.0 5.5 69 150-235 16-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.9 6.9E-09 2.4E-13 88.3 9.3 70 161-235 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.5 3.6E-07 1.2E-11 70.7 7.7 70 149-232 21-95 (117)
210 1wey_A Calcipressin 1; structu 97.9 1.9E-05 6.3E-10 60.5 5.6 74 150-237 6-84 (104)
211 1uw4_A UPF3X; nonsense mediate 97.7 0.00039 1.3E-08 51.9 10.7 87 150-237 2-88 (91)
212 1whv_A Poly(A)-specific ribonu 97.7 0.00018 6.1E-09 54.4 8.4 54 150-215 17-70 (100)
213 2l08_A Regulator of nonsense t 97.3 0.0009 3.1E-08 50.5 7.5 87 149-236 9-95 (97)
214 3ctr_A Poly(A)-specific ribonu 97.1 0.00088 3E-08 50.7 5.8 54 150-215 7-60 (101)
215 2dhx_A Poly (ADP-ribose) polym 96.8 0.0041 1.4E-07 47.4 7.6 61 149-221 8-73 (104)
216 1wwh_A Nucleoporin 35, nucleop 96.6 0.0064 2.2E-07 47.4 7.3 62 149-221 24-85 (119)
217 3pq1_A Poly(A) RNA polymerase; 95.9 0.0032 1.1E-07 59.7 2.7 55 148-211 52-106 (464)
218 2kn4_A Immunoglobulin G-bindin 95.6 0.012 4E-07 46.6 4.3 26 192-217 11-36 (158)
219 2i2y_A Fusion protein consists 94.5 0.015 5.1E-07 45.7 2.2 39 192-236 11-50 (150)
220 3d45_A Poly(A)-specific ribonu 93.2 0.22 7.4E-06 47.6 7.9 54 150-215 441-494 (507)
221 3p3d_A Nucleoporin 53; structu 91.5 0.11 3.8E-06 41.1 2.9 70 150-221 8-88 (132)
222 2g0c_A ATP-dependent RNA helic 70.9 11 0.00037 25.7 5.9 68 151-235 2-75 (76)
223 4f25_A Polyadenylate-binding p 62.3 1.6 5.5E-05 32.3 0.0 17 149-165 97-113 (115)
224 3fry_A Probable copper-exporti 35.5 57 0.0019 21.1 4.5 58 150-218 7-64 (73)
225 4a4j_A Pacszia, cation-transpo 30.5 93 0.0032 19.4 4.9 54 150-212 4-60 (69)
226 4eyt_A Telomerase associated p 25.9 2E+02 0.0067 21.1 8.0 55 149-214 12-66 (129)
227 3dxs_X Copper-transporting ATP 24.2 1.4E+02 0.0048 18.8 6.5 55 150-213 4-62 (74)
228 4e8u_A Putative uncharacterize 24.0 1.9E+02 0.0065 23.4 6.4 50 151-206 14-74 (172)
229 1aw0_A Menkes copper-transport 21.7 1.5E+02 0.005 18.1 4.9 58 150-217 5-66 (72)
230 2l3m_A Copper-ION-binding prot 21.1 1.5E+02 0.0051 18.0 7.0 59 150-218 7-69 (71)
231 2e7g_A Putative ribosome-bindi 20.7 2E+02 0.007 21.6 5.8 36 173-215 43-79 (129)
No 1
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.5e-21 Score=143.10 Aligned_cols=89 Identities=25% Similarity=0.366 Sum_probs=78.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++++|||+|||+++|+++|+++|++||.|.+|+++.+... |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 75 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDT---GRSKGYGFITFSDSECARRALEQLNGFELAG-----R 75 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSS---CCCCSEEEEEESCHHHHHHHHHHHTTCCSSS-----S
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCC---CceeeEEEEEECCHHHHHHHHHHhCCCeeCC-----c
Confidence 3689999999999999999999999999999999876432 5667799999999999999999999999999 8
Q ss_pred cEEEEeecCCCCCCCCC
Q 025677 228 FLRLQFSRNPGPRSVFG 244 (249)
Q Consensus 228 ~LrV~~ak~~~~r~g~g 244 (249)
.|+|+|++.+..++.+.
T Consensus 76 ~l~V~~a~~~~~~~~~~ 92 (95)
T 2dnz_A 76 PMRVGHVTERLDGGSGP 92 (95)
T ss_dssp CCEEEESSCCCCCCCCC
T ss_pred EEEEEEcccccCCCCCC
Confidence 89999999876555443
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=148.11 Aligned_cols=80 Identities=24% Similarity=0.446 Sum_probs=74.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++.. |+++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g-----r~ 90 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA---GHSLGYGFVNYVTAKDAERAINTLNGLRLQS-----KT 90 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSS---CCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCC---CcccccEEEEECCHHHHHHHHHHhCCCEECC-----EE
Confidence 478999999999999999999999999999999976532 7788899999999999999999999999999 89
Q ss_pred EEEEeecC
Q 025677 229 LRLQFSRN 236 (249)
Q Consensus 229 LrV~~ak~ 236 (249)
|+|+||++
T Consensus 91 l~V~~AkP 98 (99)
T 4fxv_A 91 IKVSYARP 98 (99)
T ss_dssp CEEEECCB
T ss_pred EEEEEeeC
Confidence 99999975
No 3
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=143.49 Aligned_cols=91 Identities=15% Similarity=0.136 Sum_probs=79.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+... |+++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 85 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVT---GQHQGYGFVEFLSEEDADYAIKIMDMIKLYG-----K 85 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSS---CSBCSCEEEEESSHHHHHHHHHHSSSCBCSS-----C
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CcCCcEEEEEECCHHHHHHHHHHhCCCeECC-----e
Confidence 4689999999999999999999999999999999876522 5677799999999999999999999999999 8
Q ss_pred cEEEEeecCCCCCCCCCCC
Q 025677 228 FLRLQFSRNPGPRSVFGAR 246 (249)
Q Consensus 228 ~LrV~~ak~~~~r~g~g~r 246 (249)
.|+|+|++.+..+...+++
T Consensus 86 ~l~v~~a~~~~~~~~~~~~ 104 (105)
T 1x5u_A 86 PIRVNKASAHNKNLSGPSS 104 (105)
T ss_dssp BCEEEETTTTSCCCCCCCC
T ss_pred EEEEEECCCCCcCCCCCCC
Confidence 8999999987665544443
No 4
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=141.26 Aligned_cols=86 Identities=21% Similarity=0.346 Sum_probs=77.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 147 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 147 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
.+.++|||+|||+++|+++|+++|++||.|.+|+|+.+ + |++++||||+|.+.++|++|++.|||..|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----- 82 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-G----GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT----- 82 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-S----SSEEEEEEEEESSHHHHHHHHHHHTTCBSSS-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-C----CCcCEEEEEEECCHHHHHHHHHHhCCCEeCC-----
Confidence 34689999999999999999999999999999999977 3 6777899999999999999999999999998
Q ss_pred ccEEEEeecCCCCCCC
Q 025677 227 KFLRLQFSRNPGPRSV 242 (249)
Q Consensus 227 r~LrV~~ak~~~~r~g 242 (249)
+.|+|+|++.+..+..
T Consensus 83 ~~l~V~~a~~~~~~~~ 98 (103)
T 2d9p_A 83 KPLYVALAQRKEERQS 98 (103)
T ss_dssp SBCEEEECSSCCCCCC
T ss_pred cEEEEEEecccccCCC
Confidence 8899999998765543
No 5
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=2.8e-20 Score=141.30 Aligned_cols=92 Identities=22% Similarity=0.412 Sum_probs=79.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025677 145 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 224 (249)
Q Consensus 145 p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 224 (249)
+..+.++|||+|||+++|+++|+++|++|| |.+|+|+.+... |+++|||||+|.+.++|++|+ .|||..|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--- 82 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDT---DKFKGFCYVEFDEVDSLKEAL-TYDGALLGD--- 82 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSS---CSEEEEEEEEESSHHHHHHHG-GGTTCEETT---
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCC---CccceEEEEEECCHHHHHHHH-hhCCCeECC---
Confidence 344568999999999999999999999995 999999976532 677889999999999999999 899999999
Q ss_pred CCccEEEEeecCCCCCCCCCCC
Q 025677 225 DSKFLRLQFSRNPGPRSVFGAR 246 (249)
Q Consensus 225 ~~r~LrV~~ak~~~~r~g~g~r 246 (249)
+.|+|+|++.+..+..+.++
T Consensus 83 --~~l~V~~a~~~~~~~~~~~~ 102 (103)
T 2dng_A 83 --RSLRVDIAEGRKQDKSGPSS 102 (103)
T ss_dssp --EECEEEECCCCCCCCSSCCC
T ss_pred --eEEEEEEecCCCCCCCCCCC
Confidence 89999999987655544333
No 6
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=142.26 Aligned_cols=88 Identities=18% Similarity=0.307 Sum_probs=77.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++++|||+|||+++|+++|+++|++||.|.+|+|+.+... |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 82 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET---EKHRGFAFVEFELAEDAAAAIDNMNESELFG-----R 82 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSS---CCCSSEEEECCSSHHHHHHHHHHHTTEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEECC-----c
Confidence 3589999999999999999999999999999999866432 5667799999999999999999999999999 8
Q ss_pred cEEEEeecCCCCCCCC
Q 025677 228 FLRLQFSRNPGPRSVF 243 (249)
Q Consensus 228 ~LrV~~ak~~~~r~g~ 243 (249)
.|+|+|++.+..+...
T Consensus 83 ~l~V~~a~~~~~~~~~ 98 (102)
T 2cqb_A 83 TIRVNLAKPMRIKESG 98 (102)
T ss_dssp EEEEEECCCCCCCCCC
T ss_pred EEEEEeCCCCCCCCCC
Confidence 9999999987655543
No 7
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.8e-20 Score=139.41 Aligned_cols=88 Identities=19% Similarity=0.305 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+... |+++|||||+|.+.++|++|++ ||+..|.+ +
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g-----~ 79 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEK---QRPRGFGFITFEDEQSVDQAVN-MHFHDIMG-----K 79 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTT---CSCCSEEEEEESSHHHHHHHHH-HCCCBSSS-----C
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC---CCCCceEEEEECCHHHHHHHHH-hCCCEECC-----e
Confidence 3589999999999999999999999999999999876432 5666799999999999999998 99999998 8
Q ss_pred cEEEEeecCCCCCCCCC
Q 025677 228 FLRLQFSRNPGPRSVFG 244 (249)
Q Consensus 228 ~LrV~~ak~~~~r~g~g 244 (249)
.|+|+|++.+..+....
T Consensus 80 ~l~V~~a~~~~~~~~~~ 96 (99)
T 2dgs_A 80 KVEVKRAEPRDSKSSGP 96 (99)
T ss_dssp BCEEEECCCCCCCCCCS
T ss_pred EEEEEECCCCcccCCCC
Confidence 89999999876555433
No 8
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=141.76 Aligned_cols=85 Identities=24% Similarity=0.370 Sum_probs=76.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++|+++|+++|++||.|.+|+|+.+... ++++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 12 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~ 83 (102)
T 1x5s_A 12 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRET---QRSRGFGFVTFENIDDAKDAMMAMNGKSVDG-----RQ 83 (102)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSS---CSCCSEEEEECSSHHHHHHHHHHHTTCCTTS-----CC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC---CCcccEEEEEECCHHHHHHHHHHhCCCEECC-----eE
Confidence 589999999999999999999999999999999875422 5667799999999999999999999999998 88
Q ss_pred EEEEeecCCCCCC
Q 025677 229 LRLQFSRNPGPRS 241 (249)
Q Consensus 229 LrV~~ak~~~~r~ 241 (249)
|+|+|++.+..+.
T Consensus 84 l~v~~a~~~~~~~ 96 (102)
T 1x5s_A 84 IRVDQAGKSSDNR 96 (102)
T ss_dssp CEEEEEECCCCCC
T ss_pred EEEEECCCCCCCC
Confidence 9999998865443
No 9
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.9e-20 Score=140.29 Aligned_cols=86 Identities=21% Similarity=0.452 Sum_probs=77.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.++.. |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 85 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTT---GQSKGFAFISFHRREDAARAIAGVSGFGYDH-----L 85 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSS---CSEEEEEEEEESSHHHHHHHHHHTTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCC---CceeeEEEEEECCHHHHHHHHHHcCCCeeCC-----c
Confidence 3689999999999999999999999999999999876432 6778899999999999999999999999999 8
Q ss_pred cEEEEeecCCCCCC
Q 025677 228 FLRLQFSRNPGPRS 241 (249)
Q Consensus 228 ~LrV~~ak~~~~r~ 241 (249)
.|+|+|++.+..+.
T Consensus 86 ~l~v~~a~~~~~~~ 99 (103)
T 2cq0_A 86 ILNVEWAKPSTNSG 99 (103)
T ss_dssp ECEEEESSCCCCSC
T ss_pred EEEEEECCCCCCCC
Confidence 99999998865543
No 10
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.84 E-value=3.3e-20 Score=143.54 Aligned_cols=86 Identities=21% Similarity=0.477 Sum_probs=77.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+... |+++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 95 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQT---NLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM-----K 95 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSS---CSEEEEEEEECSSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC---CCcCccEEEEECCHHHHHHHHHHcCCCEECC-----E
Confidence 3589999999999999999999999999999999876532 6788899999999999999999999999999 8
Q ss_pred cEEEEeecCCCCCC
Q 025677 228 FLRLQFSRNPGPRS 241 (249)
Q Consensus 228 ~LrV~~ak~~~~r~ 241 (249)
.|+|+|++.+..+.
T Consensus 96 ~l~V~~a~~~~~~~ 109 (115)
T 2cpz_A 96 RLKVQLKRSKNDSK 109 (115)
T ss_dssp ECEEECCCCSCCCC
T ss_pred EEEEEEcCCCCcCC
Confidence 99999998875443
No 11
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.7e-20 Score=141.42 Aligned_cols=83 Identities=25% Similarity=0.480 Sum_probs=73.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+|..+ +++++||||+|.+.++|++|++.||+..|.+ +
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 89 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR------RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG-----Y 89 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS------SSSSCCEEEEESCHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC------CCCCcEEEEEECCHHHHHHHHHHcCCCEECC-----e
Confidence 3589999999999999999999999999999998654 2345699999999999999999999999999 8
Q ss_pred cEEEEeecCCCCCC
Q 025677 228 FLRLQFSRNPGPRS 241 (249)
Q Consensus 228 ~LrV~~ak~~~~r~ 241 (249)
.|+|+|++....+.
T Consensus 90 ~l~V~~a~~~~~~~ 103 (109)
T 1x4a_A 90 RLRVEFPRSGRGTG 103 (109)
T ss_dssp ECEEECCCCCCCCC
T ss_pred EEEEEEcccCCCCC
Confidence 99999998865443
No 12
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=142.88 Aligned_cols=87 Identities=23% Similarity=0.397 Sum_probs=76.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeE--------EEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCcee
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYK--------EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM 219 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~--------~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i 219 (249)
+.++|||+|||+++|+++|+++|++||.|. .|+|+.++.. |+++|||||+|.+.++|++|++.|||..|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKET---GKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTT---CSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCC---CCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 468999999999999999999999999998 6888876322 56677999999999999999999999999
Q ss_pred CCCCCCCccEEEEeecCCCCCCC
Q 025677 220 DEDDPDSKFLRLQFSRNPGPRSV 242 (249)
Q Consensus 220 ~g~~~~~r~LrV~~ak~~~~r~g 242 (249)
.+ +.|+|+|++.+..+..
T Consensus 91 ~g-----~~l~V~~a~~~~~~~~ 108 (113)
T 2cpe_A 91 QG-----SKLKVSLARKKPPMNS 108 (113)
T ss_dssp TT-----EECEEECSSCCCCSTT
T ss_pred CC-----CEEEEEECCCCCCCCC
Confidence 99 8999999998765543
No 13
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=140.83 Aligned_cols=86 Identities=22% Similarity=0.288 Sum_probs=76.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+... |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 83 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHT---KAPRGFAFVRFHDRRDAQDAEAAMDGAELDG-----R 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSS---CSBCSCEEEEESSSSHHHHHHHHHSSCCBTT-----B
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCC---CCCCeEEEEEECCHHHHHHHHHHcCCCEECC-----c
Confidence 3589999999999999999999999999999999866432 5667799999999999999999999999999 8
Q ss_pred cEEEEeecCCCCCC
Q 025677 228 FLRLQFSRNPGPRS 241 (249)
Q Consensus 228 ~LrV~~ak~~~~r~ 241 (249)
.|+|+|++....+.
T Consensus 84 ~l~V~~a~~~~~~~ 97 (103)
T 2dnm_A 84 ELRVQVARYGRRDL 97 (103)
T ss_dssp CCEEEECSSCCSCC
T ss_pred EEEEEECCcCCCCC
Confidence 89999999865544
No 14
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=3.6e-20 Score=143.81 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=74.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++|+++|+++|++||.|.+|+|+.+... |+++|||||+|.+.++|++|++.|||..|++ +.
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t---g~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g-----r~ 77 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRT---RKHLGLARVLFTSTRGAKETVKNLHLTSVMG-----NI 77 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCC---CceeeEEEEEECCHHHHHHHHHHhCCCEECC-----eE
Confidence 489999999999999999999999999999999976532 6788899999999999999999999999999 89
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|+|+|++..
T Consensus 78 i~V~~a~~~ 86 (110)
T 3s8s_A 78 IHAQLDIKG 86 (110)
T ss_dssp CEEEECSTT
T ss_pred EEEEECCCC
Confidence 999999754
No 15
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=8.4e-20 Score=137.77 Aligned_cols=84 Identities=27% Similarity=0.517 Sum_probs=76.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+.+ |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 86 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRA----GKPKGLAYVEYENESQASQAVMKMDGMTIKE-----N 86 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTEESSS-----C
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCC----CCEEeEEEEEECCHHHHHHHHHHhCCCEECC-----E
Confidence 358999999999999999999999999999999998764 6777899999999999999999999999998 8
Q ss_pred cEEEEeecCCCCC
Q 025677 228 FLRLQFSRNPGPR 240 (249)
Q Consensus 228 ~LrV~~ak~~~~r 240 (249)
.|+|+|++.+..+
T Consensus 87 ~l~v~~a~~~~~~ 99 (100)
T 2do4_A 87 IIKVAISNSGPSS 99 (100)
T ss_dssp EEEEEECCCCSCC
T ss_pred EEEEEECCCCCCC
Confidence 8999999886543
No 16
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.8e-20 Score=138.96 Aligned_cols=84 Identities=25% Similarity=0.434 Sum_probs=75.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+... ++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 83 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-----NDPYCFVEFYEHRDAAAALAAMNGRKILG-----K 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-----SCCEEEEEESSHHHHHHHHHHHTTEEETT-----E
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-----CCCEEEEEECCHHHHHHHHHHhCCCCcCC-----C
Confidence 4689999999999999999999999999999999976532 34599999999999999999999999999 8
Q ss_pred cEEEEeecCCCCCC
Q 025677 228 FLRLQFSRNPGPRS 241 (249)
Q Consensus 228 ~LrV~~ak~~~~r~ 241 (249)
.|+|+|++.+..+.
T Consensus 84 ~l~V~~a~~~~~~~ 97 (103)
T 2cqi_A 84 EVKVNWATTPSSQK 97 (103)
T ss_dssp EEEEEECCCTTCCC
T ss_pred eEEEEECCCCcccc
Confidence 99999999875544
No 17
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=6.8e-20 Score=139.52 Aligned_cols=86 Identities=27% Similarity=0.372 Sum_probs=76.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeC-CCccCCCccceEEEEEeCCHHHHHHHHHHH-cCceeCCCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK-ESKLRGGDPLILCFVDFENPACAATALSAL-QGYRMDEDDPD 225 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~-~~~~~~G~~kg~aFVeF~~~~~A~~Al~~L-nG~~i~g~~~~ 225 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+ .. .|+++|||||+|.+.++|++|++.| |+..|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g---- 86 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTG---TGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG---- 86 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSS---SCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS----
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCC---CCCcCceEEEEECCHHHHHHHHHHhccCCeECC----
Confidence 4689999999999999999999999999999999866 21 2566779999999999999999999 9999998
Q ss_pred CccEEEEeecCCCCCC
Q 025677 226 SKFLRLQFSRNPGPRS 241 (249)
Q Consensus 226 ~r~LrV~~ak~~~~r~ 241 (249)
+.|+|+|++.+..+.
T Consensus 87 -~~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 87 -RRLVLEWADSEVTVQ 101 (107)
T ss_dssp -CBCEEEECCCCCCCC
T ss_pred -CEEEEEeCCCCCCCC
Confidence 889999998875443
No 18
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=5.2e-20 Score=138.83 Aligned_cols=84 Identities=21% Similarity=0.348 Sum_probs=75.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEE--------EEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHc
Q 025677 144 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKE--------VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 215 (249)
Q Consensus 144 ~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~--------v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~Ln 215 (249)
.++.+.++|||+|||+++|+++|+++|++||.|.+ |+++.++.. |+++|||||+|.+.++|++|++.||
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~---g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRET---GKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTT---CSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCC---CCeeeEEEEEECCHHHHHHHHHHhC
Confidence 34445799999999999999999999999999999 999876432 6788899999999999999999999
Q ss_pred CceeCCCCCCCccEEEEeec
Q 025677 216 GYRMDEDDPDSKFLRLQFSR 235 (249)
Q Consensus 216 G~~i~g~~~~~r~LrV~~ak 235 (249)
|..|.+ +.|+|+||+
T Consensus 85 g~~~~g-----~~l~V~~A~ 99 (99)
T 2la6_A 85 GKEFSG-----NPIKVSFAT 99 (99)
T ss_dssp TCBSSS-----SBCEEEECC
T ss_pred CCEeCC-----cEEEEEecC
Confidence 999998 889999985
No 19
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.1e-20 Score=139.67 Aligned_cols=86 Identities=13% Similarity=0.291 Sum_probs=76.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEE-EEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEV-RLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v-~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+++|||+|||+++|+++|+++|++||.|.+| +|+.+.. .|+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~---~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 76 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPD---TGNSKGYAFINFASFDASDAAIEAMNGQYLCN-----R 76 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTT---TCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCC---CCCcCeEEEEEECCHHHHHHHHHHcCCCEECC-----E
Confidence 5899999999999999999999999999999 8887632 25667799999999999999999999999998 8
Q ss_pred cEEEEeecCCCCCCC
Q 025677 228 FLRLQFSRNPGPRSV 242 (249)
Q Consensus 228 ~LrV~~ak~~~~r~g 242 (249)
.|+|+|++.+..+..
T Consensus 77 ~l~v~~a~~~~~~~~ 91 (96)
T 1x5t_A 77 PITVSYAFKKDSKGS 91 (96)
T ss_dssp ECEEEESCCCCCCCC
T ss_pred EEEEEEecccCCCCC
Confidence 999999988755543
No 20
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-19 Score=137.57 Aligned_cols=84 Identities=20% Similarity=0.275 Sum_probs=75.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+..+ +++||||+|.+.++|++|++.|||..|.+ +
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 83 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-----SKGFGFVTFENSADADRAREKLHGTVVEG-----R 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-----TCCEEEEEESCHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-----CcEEEEEEECCHHHHHHHHHHhCCCEECC-----E
Confidence 3589999999999999999999999999999999976532 45699999999999999999999999999 8
Q ss_pred cEEEEeecCCCCCC
Q 025677 228 FLRLQFSRNPGPRS 241 (249)
Q Consensus 228 ~LrV~~ak~~~~r~ 241 (249)
.|+|+|++.+..+.
T Consensus 84 ~l~v~~a~~~~~~~ 97 (103)
T 2cq3_A 84 KIEVNNATARVMTN 97 (103)
T ss_dssp ECEEEECCSSCCCC
T ss_pred EEEEEEcccCCCCC
Confidence 99999998875544
No 21
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=6.1e-20 Score=138.12 Aligned_cols=86 Identities=22% Similarity=0.330 Sum_probs=76.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++++|||+|||+++|+++|+++|++||.|.+|+|+.+... |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 78 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLT---KKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG-----R 78 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTT---CCCCSEEEEEESSHHHHHHHHHHTTTEESSS-----C
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCC---CCcCeEEEEEECCHHHHHHHHHHhCCCEECC-----c
Confidence 3589999999999999999999999999999999876522 5667799999999999999999999999998 8
Q ss_pred cEEEEeecCCCCCC
Q 025677 228 FLRLQFSRNPGPRS 241 (249)
Q Consensus 228 ~LrV~~ak~~~~r~ 241 (249)
.|+|+|++.+..+.
T Consensus 79 ~l~V~~a~~~~~~~ 92 (99)
T 1whw_A 79 MLHVLPSTIKKEAS 92 (99)
T ss_dssp EEEEEECCCCSTTC
T ss_pred EEEEEEcCCCcccc
Confidence 89999999875543
No 22
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=7.5e-20 Score=145.86 Aligned_cols=88 Identities=20% Similarity=0.384 Sum_probs=78.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCC
Q 025677 146 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 225 (249)
Q Consensus 146 ~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~ 225 (249)
+.+.++|||+|||+++|+++|+++|++||.|.+|+|+.++.. |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---- 111 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRET---RQSRGYGFVKFQSGSSAQQAIAGLNGFNILN---- 111 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTT---TEEEEEEEEEESSHHHHHHHHHHTTTEECSS----
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEECC----
Confidence 345689999999999999999999999999999999876532 6778899999999999999999999999999
Q ss_pred CccEEEEeecCCCCCC
Q 025677 226 SKFLRLQFSRNPGPRS 241 (249)
Q Consensus 226 ~r~LrV~~ak~~~~r~ 241 (249)
+.|+|+|++....+.
T Consensus 112 -~~l~v~~a~~~~~~~ 126 (139)
T 1u6f_A 112 -KRLKVALAASGHQRP 126 (139)
T ss_dssp -CEEEEEESSCCCCCC
T ss_pred -eEEEEEECCCCCCCC
Confidence 889999998875443
No 23
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=8.7e-20 Score=139.80 Aligned_cols=86 Identities=20% Similarity=0.375 Sum_probs=76.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHc------CceeCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ------GYRMDE 221 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~Ln------G~~i~g 221 (249)
++++|||+|||+++|+++|+++|++||.|.+|+|+.+... |+++|||||+|.+.++|++|++.|| +..|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDT---EHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSS---CCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 4689999999999999999999999999999999876432 5667799999999999999999999 999998
Q ss_pred CCCCCccEEEEeecCCCCCC
Q 025677 222 DDPDSKFLRLQFSRNPGPRS 241 (249)
Q Consensus 222 ~~~~~r~LrV~~ak~~~~r~ 241 (249)
+.|+|+|++.+..+.
T Consensus 91 -----~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 91 -----RQLKVDLAVTRDEAA 105 (111)
T ss_dssp -----CEEEEECCCCCCCCC
T ss_pred -----EEEEEEECCCCccCC
Confidence 889999998865443
No 24
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=3.7e-20 Score=140.99 Aligned_cols=86 Identities=14% Similarity=0.230 Sum_probs=75.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCcee---CCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM---DEDDP 224 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i---~g~~~ 224 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+... |+++|||||+|.+.++|++|++.|||..+ .+
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g--- 85 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFT---GMHKGCAFLTYCERESALKAQSALHEQKTLPGMN--- 85 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSS---CSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC---
Confidence 4689999999999999999999999999999999876432 56677999999999999999999999987 55
Q ss_pred CCccEEEEeecCCCCCC
Q 025677 225 DSKFLRLQFSRNPGPRS 241 (249)
Q Consensus 225 ~~r~LrV~~ak~~~~r~ 241 (249)
+.|+|+|++.+..+.
T Consensus 86 --~~l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 86 --RPIQVKPADSESRGG 100 (106)
T ss_dssp --SCCEEEECCCCSCCC
T ss_pred --ceEEEEECCcccccC
Confidence 789999998875544
No 25
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=2.8e-20 Score=146.03 Aligned_cols=83 Identities=18% Similarity=0.307 Sum_probs=74.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++++|||+|||+++|+++|+++|++||.|.+|+|+.+... |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 92 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRT---GYLKGYTLVEYETYKEAQAAMEGLNGQDLMG-----Q 92 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTT---SSBCSCEEEEESSHHHHHHHHHHHTTCBSSS-----S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHhCCCeeCC-----e
Confidence 3689999999999999999999999999999999866422 5667799999999999999999999999998 8
Q ss_pred cEEEEeecCCC
Q 025677 228 FLRLQFSRNPG 238 (249)
Q Consensus 228 ~LrV~~ak~~~ 238 (249)
.|+|+|++...
T Consensus 93 ~l~v~~a~~~~ 103 (126)
T 3ex7_B 93 PISVDWCFVRG 103 (126)
T ss_dssp BCEEEESEESS
T ss_pred EEEEEEecCCC
Confidence 89999997653
No 26
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=4.2e-20 Score=135.46 Aligned_cols=82 Identities=22% Similarity=0.331 Sum_probs=73.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+++.+... |+++|||||+|.+.++|++|++.|||..+.+ +
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 76 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMAT---GKSKGYGFVSFFNKWDAENAIQQMGGQWLGG-----R 76 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHcCCCEECC-----e
Confidence 3589999999999999999999999999999999876422 6778899999999999999999999999999 8
Q ss_pred cEEEEeecCC
Q 025677 228 FLRLQFSRNP 237 (249)
Q Consensus 228 ~LrV~~ak~~ 237 (249)
.|+|+|++.+
T Consensus 77 ~l~v~~a~~k 86 (87)
T 3bs9_A 77 QIRTNWATRK 86 (87)
T ss_dssp ECEEEEEC--
T ss_pred EEEEEecCCC
Confidence 9999999864
No 27
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.82 E-value=5.6e-20 Score=136.35 Aligned_cols=83 Identities=19% Similarity=0.306 Sum_probs=75.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++++|||+|||+++++++|+++|++||.|.+|+++.+. |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-----g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-----~ 76 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN-----GKSKGCGVVKFESPEVAERACRMMNGMKLSG-----R 76 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESS-----SCEEEEEEEEESSHHHHHHHHHHHTTCCBTT-----B
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccC-----CCcceEEEEEECCHHHHHHHHHHhCCCEECC-----c
Confidence 35899999999999999999999999999999998742 6778899999999999999999999999999 8
Q ss_pred cEEEEeecCCCCC
Q 025677 228 FLRLQFSRNPGPR 240 (249)
Q Consensus 228 ~LrV~~ak~~~~r 240 (249)
.|+|+|++.+...
T Consensus 77 ~l~v~~a~~~~~~ 89 (92)
T 2dgv_A 77 EIDVRIDRNASGP 89 (92)
T ss_dssp CCCCEECSCCSSC
T ss_pred EEEEEEcCCCCCC
Confidence 8999999886543
No 28
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=3.4e-20 Score=144.26 Aligned_cols=82 Identities=17% Similarity=0.308 Sum_probs=74.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+.+|||+|||+++|+++|+++|++||.|.+|+|+.++ +.++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-----~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g-----~~ 74 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-----NGSKGYGFVHFETQEAAERAIEKMNGMLLND-----RK 74 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-----TEEEEEEEEEESCHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-----CCCCceEEEEECCHHHHHHHHHHcCCCEECC-----EE
Confidence 4789999999999999999999999999999999775 3467899999999999999999999999999 89
Q ss_pred EEEEeecCCCCC
Q 025677 229 LRLQFSRNPGPR 240 (249)
Q Consensus 229 LrV~~ak~~~~r 240 (249)
|+|+|++....+
T Consensus 75 i~V~~a~~~~~~ 86 (115)
T 4f25_A 75 VFVGRFKSRKER 86 (115)
T ss_dssp CEEEESSCCCC-
T ss_pred EEEEECCCcccc
Confidence 999999876443
No 29
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.7e-20 Score=135.89 Aligned_cols=81 Identities=23% Similarity=0.310 Sum_probs=74.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++++|||+|||+++|+++|+++|++||.|.+|+++.+... |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 85 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS---RRSRGFAFVYFENVDDAKEAKERANGMELDG-----R 85 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSS---SSEEEEEEEEESSHHHHHHHHHHHTTEEETT-----E
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCC---CCcccEEEEEECCHHHHHHHHHHhCCCEECC-----E
Confidence 4689999999999999999999999999999999876432 6777899999999999999999999999999 8
Q ss_pred cEEEEeecC
Q 025677 228 FLRLQFSRN 236 (249)
Q Consensus 228 ~LrV~~ak~ 236 (249)
.|+|+|++.
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 999999975
No 30
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.1e-20 Score=141.45 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=76.3
Q ss_pred CCcEEEEcCCCCCCCHHHHH---HHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVA---HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 224 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~---~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 224 (249)
..++|||+|||+++++++|+ ++|++||.|.+|+|+.+......++++|||||+|.+.++|++|++.|||..|++
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g--- 90 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG--- 90 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT---
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC---
Confidence 35899999999999999999 999999999999998665322224566899999999999999999999999999
Q ss_pred CCccEEEEeecCCCC
Q 025677 225 DSKFLRLQFSRNPGP 239 (249)
Q Consensus 225 ~~r~LrV~~ak~~~~ 239 (249)
+.|+|+||+.+..
T Consensus 91 --r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 --RTLKASLGTTKYC 103 (111)
T ss_dssp --EEEEEESCCCCSC
T ss_pred --EEEEEEecccccc
Confidence 8999999988653
No 31
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4e-20 Score=139.09 Aligned_cols=85 Identities=20% Similarity=0.398 Sum_probs=76.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeE-EEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYK-EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~-~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
++++|||+|||+++++++|+++|++||.|. +|+|+.++.. |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----- 79 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLT---GIPAGYCFVEFADLATAEKCLHKINGKPLPG----- 79 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSS---CCEEEEEEEECSCHHHHHHHHHTTTTSEESS-----
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCC---CCcCCEEEEEeCCHHHHHHHHHHHcCCccCC-----
Confidence 368999999999999999999999999999 9999976532 6778899999999999999999999999999
Q ss_pred cc----EEEEeecCCCCC
Q 025677 227 KF----LRLQFSRNPGPR 240 (249)
Q Consensus 227 r~----LrV~~ak~~~~r 240 (249)
+. |+|+|++.....
T Consensus 80 ~~~~~~l~v~~a~~~~~~ 97 (99)
T 2div_A 80 ATPAKRFKLNYATYSGPS 97 (99)
T ss_dssp CSSCEECCEEETTCCSSS
T ss_pred CCcceeEEEeecCCCCCC
Confidence 66 999999886543
No 32
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.8e-20 Score=137.60 Aligned_cols=87 Identities=24% Similarity=0.319 Sum_probs=76.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+++|||+|||+++|+++|+++|++||.|.+|+|+.+....-.++++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 79 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG-----HK 79 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC-----eE
Confidence 5899999999999999999999999999999998654311113778899999999999999999999999999 89
Q ss_pred EEEEeecCCCCC
Q 025677 229 LRLQFSRNPGPR 240 (249)
Q Consensus 229 LrV~~ak~~~~r 240 (249)
|+|+|++....+
T Consensus 80 l~V~~a~~~~~~ 91 (98)
T 2cpf_A 80 LEVRISERATKP 91 (98)
T ss_dssp CEEECSSCSSCC
T ss_pred EEEEEccCCCCC
Confidence 999999886443
No 33
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.4e-19 Score=138.17 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=75.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+++|||+|||+++|+++|+++|++||.|.+|+|+.+++ |++++||||+|.+.++|++|++.|||..|.+ +.
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 85 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD----GKSRGIGTVTFEQSIEAVQAISMFNGQLLFD-----RP 85 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT----CSEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCeeeEEEEEECCHHHHHHHHHHhCCCEeCC-----CE
Confidence 58999999999999999999999999999999998764 6778899999999999999999999999998 89
Q ss_pred EEEEeecCCCCC
Q 025677 229 LRLQFSRNPGPR 240 (249)
Q Consensus 229 LrV~~ak~~~~r 240 (249)
|+|+|++...++
T Consensus 86 l~v~~a~~~~~~ 97 (114)
T 2do0_A 86 MHVKMDERALPK 97 (114)
T ss_dssp CEEEECSCCCCC
T ss_pred EEEEEcccCCCC
Confidence 999999765433
No 34
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=2.4e-19 Score=136.19 Aligned_cols=87 Identities=22% Similarity=0.325 Sum_probs=77.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++++|||+|||+++|+++|+++|++||.|.+|+|+.+.+ |+++|||||+|.+.++|++|++.|||..+.+... +
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~--~ 87 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD----GSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS--S 87 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSS----SCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCS--S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCC--c
Confidence 368999999999999999999999999999999998764 6778899999999999999999999999987421 5
Q ss_pred cEEEEeecCCCCC
Q 025677 228 FLRLQFSRNPGPR 240 (249)
Q Consensus 228 ~LrV~~ak~~~~r 240 (249)
.|+|+|++.+..+
T Consensus 88 ~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 88 SLVVKFADTDKES 100 (105)
T ss_dssp CCEEEESCSSCCC
T ss_pred cEEEEECccCccc
Confidence 7999999887554
No 35
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-20 Score=142.24 Aligned_cols=80 Identities=16% Similarity=0.360 Sum_probs=71.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCC--eEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCc----eeCCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVG--YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY----RMDED 222 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~--i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~----~i~g~ 222 (249)
-+||||+|||+++|+++|+++|++||. +.+|+++.++.. |+++|||||+|.+.++|++|++.|||. .|++
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~t---g~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G- 84 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQT---QQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG- 84 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSS---SSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT-
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCC---CCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC-
Confidence 479999999999999999999999995 568888876432 667779999999999999999999997 4888
Q ss_pred CCCCccEEEEeecC
Q 025677 223 DPDSKFLRLQFSRN 236 (249)
Q Consensus 223 ~~~~r~LrV~~ak~ 236 (249)
++|+|+||++
T Consensus 85 ----r~i~V~~Aks 94 (95)
T 2lkz_A 85 ----KTIGVDFAKS 94 (95)
T ss_dssp ----EEEEEEECCC
T ss_pred ----EEEEEEEccC
Confidence 8999999986
No 36
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=1.5e-19 Score=139.59 Aligned_cols=85 Identities=21% Similarity=0.339 Sum_probs=76.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+... |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 85 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMAT---GKSKGYGFVSFFNKWDAENAIQQMGGQWLGG-----R 85 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHTTTCEETT-----E
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEECC-----E
Confidence 4689999999999999999999999999999999976422 6778899999999999999999999999999 8
Q ss_pred cEEEEeecCCCCC
Q 025677 228 FLRLQFSRNPGPR 240 (249)
Q Consensus 228 ~LrV~~ak~~~~r 240 (249)
.|+|+|++.+..+
T Consensus 86 ~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 86 QIRTNWATRKPPA 98 (115)
T ss_dssp ECEEEESSCCCCC
T ss_pred EEEEEEccCCCCC
Confidence 9999999876443
No 37
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=135.43 Aligned_cols=79 Identities=18% Similarity=0.292 Sum_probs=72.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+++|||+|||+++++++|+++|++||.|.+|+++.+... |++++||||+|.+.++|++|++.|||..|.+ +.
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~ 87 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDT---RKSKGVAFILFLDKDSAQNCTRAINNKQLFG-----RV 87 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSS---CCCTTCEEEEESCHHHHHHHHHHTTTEEETT-----EE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC---CCcccEEEEEECCHHHHHHHHHHcCCCeeCC-----cE
Confidence 589999999999999999999999999999999876432 5566799999999999999999999999999 89
Q ss_pred EEEEeec
Q 025677 229 LRLQFSR 235 (249)
Q Consensus 229 LrV~~ak 235 (249)
|+|+|||
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999986
No 38
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=136.16 Aligned_cols=88 Identities=26% Similarity=0.381 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++++|||+|||+++|+++|+++|++|+ +|+++.+... ++++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 82 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRET---GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG-----N 82 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSS---CSEEEEEEEECSSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCC---CCcCcEEEEEECCHHHHHHHHHHhCCCeECC-----e
Confidence 468999999999999999999999884 5666655322 6778899999999999999999999999999 8
Q ss_pred cEEEEeecCCCCCCCCCCC
Q 025677 228 FLRLQFSRNPGPRSVFGAR 246 (249)
Q Consensus 228 ~LrV~~ak~~~~r~g~g~r 246 (249)
.|+|+|++.+..++.+++.
T Consensus 83 ~l~V~~a~~~~~~~~~~~~ 101 (102)
T 2fc8_A 83 KVTLDWAKPKGEGGSGPSS 101 (102)
T ss_dssp ECEEEECCCCCSSSCSCCC
T ss_pred EEEEEEecCCCCCCCCCCC
Confidence 9999999987665544433
No 39
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=7.4e-20 Score=133.59 Aligned_cols=80 Identities=20% Similarity=0.380 Sum_probs=72.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++++|||+|||+++++++|+++|++||.|.+|+++.+... |+++|||||+|.+.++|++|++.|||..+.+ +
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 77 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET---EKHRGFAFVEFELAEDAAAAIDNMNESELFG-----R 77 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTT---TEECSEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCC---CccccEEEEEECCHHHHHHHHHHhCCCEECC-----c
Confidence 3689999999999999999999999999999998865322 5667799999999999999999999999999 8
Q ss_pred cEEEEeec
Q 025677 228 FLRLQFSR 235 (249)
Q Consensus 228 ~LrV~~ak 235 (249)
.|+|+|||
T Consensus 78 ~l~v~~ak 85 (85)
T 3mdf_A 78 TIRVNLAK 85 (85)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99999986
No 40
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=137.16 Aligned_cols=90 Identities=21% Similarity=0.305 Sum_probs=76.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025677 145 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 224 (249)
Q Consensus 145 p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 224 (249)
+..+.++|||+|||+++|+++|+++|++|| |.+|+|+.+... .|+++|||||+|.+.++|++|+ .||+..|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~--~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--- 83 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSN--PERLKGFGYAEFEDLDSLLSAL-SLNEESLGN--- 83 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSC--TTSBCSCEEEEESSHHHHHHHH-GGGTCEETT---
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCC--CCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC---
Confidence 334468999999999999999999999999 999999866431 1556679999999999999999 999999999
Q ss_pred CCccEEEEeecCCCCCCCC
Q 025677 225 DSKFLRLQFSRNPGPRSVF 243 (249)
Q Consensus 225 ~~r~LrV~~ak~~~~r~g~ 243 (249)
+.|+|+|++.+..+..+
T Consensus 84 --~~l~V~~a~~~~~~~~~ 100 (104)
T 1wi8_A 84 --KRIRVDVADQAQDKDSG 100 (104)
T ss_dssp --EECEEEECCCCCCCCCC
T ss_pred --cEEEEEEccCCCCCCCC
Confidence 89999999987655433
No 41
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=138.44 Aligned_cols=84 Identities=19% Similarity=0.333 Sum_probs=76.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++++|||+|||+++|+++|+++|++||.|.+|+|+.+... |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 93 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRT---GYLKGYTLVEYETYKEAQAAMEGLNGQDLMG-----Q 93 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---SSEEEEEEEEESCHHHHHHHHHHHTTCBSSS-----S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCC---CceeeEEEEEECCHHHHHHHHHHhcCCEECC-----c
Confidence 3589999999999999999999999999999999876532 6778899999999999999999999999998 8
Q ss_pred cEEEEeecCCCC
Q 025677 228 FLRLQFSRNPGP 239 (249)
Q Consensus 228 ~LrV~~ak~~~~ 239 (249)
.|+|+|++.+.+
T Consensus 94 ~l~V~~a~~~~~ 105 (106)
T 1p27_B 94 PISVDWCFVRGP 105 (106)
T ss_dssp BCEEEESEESSC
T ss_pred EEEEEeecCCCC
Confidence 899999987654
No 42
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=2.1e-19 Score=130.62 Aligned_cols=80 Identities=20% Similarity=0.359 Sum_probs=73.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 229 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 229 (249)
.+|||+|||+++++++|+++|++||.|.+++++.+... |+++|||||+|.+.++|++|++.|||..+.+ +.|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-----~~l 73 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQT---GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG-----RPL 73 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTT---CCEEEEEEEEESCHHHHHHHHHHHTTCEETT-----EEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCC---CCccceEEEEECCHHHHHHHHHHhcCCeeCC-----cEE
Confidence 68999999999999999999999999999999876432 6778899999999999999999999999998 899
Q ss_pred EEEeecCC
Q 025677 230 RLQFSRNP 237 (249)
Q Consensus 230 rV~~ak~~ 237 (249)
+|+|++.+
T Consensus 74 ~v~~a~~~ 81 (83)
T 3md1_A 74 RINWAAKL 81 (83)
T ss_dssp EEEECCCC
T ss_pred EEEecCcC
Confidence 99999874
No 43
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-20 Score=141.06 Aligned_cols=82 Identities=21% Similarity=0.284 Sum_probs=72.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCC-CeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHc-CceeCCCCCCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ-GYRMDEDDPDS 226 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG-~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~Ln-G~~i~g~~~~~ 226 (249)
+++|||+|||+++||++|+++|++|| .|.+|+|+.++.. |+++|||||+|.+.++|++|++.|+ +..+.+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t---~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g----- 72 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSS---GQSRGFAFVEFSHLQDATRWMEANQHSLNILG----- 72 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSS---CCCSSEEEEECSSHHHHHHHHHTTTTEEEETT-----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCC---CCcCceEEEEecCHHHHHHHHHhcCCCeEECC-----
Confidence 47999999999999999999999999 7999999876432 6677799999999999999999885 567888
Q ss_pred ccEEEEeecCCC
Q 025677 227 KFLRLQFSRNPG 238 (249)
Q Consensus 227 r~LrV~~ak~~~ 238 (249)
++|+|+||+++.
T Consensus 73 r~i~V~~a~~~~ 84 (91)
T 2lxi_A 73 QKVSMHYSDPKP 84 (91)
T ss_dssp EEEEEECCCSCC
T ss_pred EEEEEEEcCCCC
Confidence 899999998754
No 44
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.81 E-value=1.9e-19 Score=146.50 Aligned_cols=84 Identities=24% Similarity=0.397 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++++|||+|||+++|+++|+++|++||.|.+|+|+.+... +++++||||+|.+.++|++|++.||+..|.+ +
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~ 109 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMK---KTACGFCFVEYYSRADAENAMRYINGTRLDD-----R 109 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHTTTSEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHhCCCEECC-----e
Confidence 4689999999999999999999999999999999876532 6778899999999999999999999999998 8
Q ss_pred cEEEEeecCCCC
Q 025677 228 FLRLQFSRNPGP 239 (249)
Q Consensus 228 ~LrV~~ak~~~~ 239 (249)
.|+|+|++.+..
T Consensus 110 ~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 110 IIRTDWDAGFKE 121 (156)
T ss_dssp ECEEEEESCCCT
T ss_pred EEEEEECCCCCC
Confidence 999999987543
No 45
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=1.4e-19 Score=135.67 Aligned_cols=82 Identities=21% Similarity=0.475 Sum_probs=74.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+++|||+|||+++++++|+++|++||.|.+|+++.+... |+++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~~ 73 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQT---GRSKGYAFIEFRDLESSASAVRNLNGYQLGS-----RF 73 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTT---CCBCSEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCC---CccceEEEEEECCHHHHHHHHHHhCCCeECC-----eE
Confidence 589999999999999999999999999999999876432 5667799999999999999999999999999 89
Q ss_pred EEEEeecCCC
Q 025677 229 LRLQFSRNPG 238 (249)
Q Consensus 229 LrV~~ak~~~ 238 (249)
|+|+|++.+.
T Consensus 74 l~V~~a~~~~ 83 (96)
T 2x1f_A 74 LKCGYSSNSD 83 (96)
T ss_dssp CEEEECSCSS
T ss_pred EEEEEcCCCC
Confidence 9999998753
No 46
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=135.34 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=74.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++++++|+++|++||.|.+|+|+.+.. |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 85 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE----GKPKSFGFVCFKHPESVSYAIALLNGIRLYG-----R 85 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSTHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----CCCceEEEEEECCHHHHHHHHHHhCCCEECC-----C
Confidence 358999999999999999999999999999999998764 6677899999999999999999999999999 8
Q ss_pred cEEEEeecC
Q 025677 228 FLRLQFSRN 236 (249)
Q Consensus 228 ~LrV~~ak~ 236 (249)
.|+|+|+++
T Consensus 86 ~l~V~~a~~ 94 (95)
T 2ywk_A 86 PINVSGPSS 94 (95)
T ss_dssp ECEEECCCC
T ss_pred EEEEEEcCC
Confidence 999999975
No 47
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=140.33 Aligned_cols=82 Identities=22% Similarity=0.427 Sum_probs=75.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+.+ |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g-----~ 76 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRT----SKSRGFAFITFENPADAKNAAKDMNGKSLHG-----K 76 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTT----TTCCCEEEEECSSHHHHHHHHHHCSSCBCSS-----S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----CCcccEEEEEECCHHHHHHHHHHhCCCEECC-----E
Confidence 458999999999999999999999999999999998764 5666799999999999999999999999999 8
Q ss_pred cEEEEeecCCC
Q 025677 228 FLRLQFSRNPG 238 (249)
Q Consensus 228 ~LrV~~ak~~~ 238 (249)
.|+|+|++.+.
T Consensus 77 ~l~V~~a~~~~ 87 (116)
T 2fy1_A 77 AIKVEQAKKPS 87 (116)
T ss_dssp BCEEEECCCSS
T ss_pred EEEEEECCCCC
Confidence 89999998764
No 48
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=1.4e-19 Score=140.42 Aligned_cols=80 Identities=26% Similarity=0.514 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.++.. |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 110 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQT---SLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT-----K 110 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSS---SCCCCEEEEEEESSHHHHHHHHHCCCCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCC---CCcCcEEEEEECCHHHHHHHHHHcCCCEECC-----E
Confidence 4689999999999999999999999999999999866422 5667799999999999999999999999999 8
Q ss_pred cEEEEeec
Q 025677 228 FLRLQFSR 235 (249)
Q Consensus 228 ~LrV~~ak 235 (249)
.|+|+|+|
T Consensus 111 ~l~V~~ak 118 (118)
T 2khc_A 111 RLKVQLKK 118 (118)
T ss_dssp ECCEEEC-
T ss_pred EEEEEecC
Confidence 99999986
No 49
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=132.74 Aligned_cols=85 Identities=22% Similarity=0.331 Sum_probs=75.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++|+++|+++|++||.|.+|+++.+.... ++++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 76 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHP--HLSKGYAYVEFENPDEAEKALKHMDGGQIDG-----QE 76 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEE--EEECSEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCC--CCCCcEEEEEEecHHHHHHHHHHcCCCeECC-----eE
Confidence 4799999999999999999999999999999998654321 2356799999999999999999999999999 89
Q ss_pred EEEEeecCCCCC
Q 025677 229 LRLQFSRNPGPR 240 (249)
Q Consensus 229 LrV~~ak~~~~r 240 (249)
|+|+|++.+.+|
T Consensus 77 l~v~~a~~~~~R 88 (88)
T 4a8x_A 77 ITATAVLAPWPR 88 (88)
T ss_dssp CEEEEECCCCCC
T ss_pred EEEEECCCCCCC
Confidence 999999887654
No 50
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=1.5e-19 Score=143.99 Aligned_cols=85 Identities=26% Similarity=0.369 Sum_probs=76.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++++|||+|||+++|+++|+++|++||.|.+|+|+.+... |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~~G~afV~F~~~~~A~~Ai~~lng~~i~g-----~ 116 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS---RRSRGFAFVYFENVDDAKEAKERANGMELDG-----R 116 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSS---SCCCCEEEEEESCHHHHHHHHHHHTTCCSSS-----S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHhCCCEECC-----E
Confidence 4689999999999999999999999999999999876432 5667799999999999999999999999999 8
Q ss_pred cEEEEeecCCCCC
Q 025677 228 FLRLQFSRNPGPR 240 (249)
Q Consensus 228 ~LrV~~ak~~~~r 240 (249)
.|+|+|++.+.++
T Consensus 117 ~l~V~~a~~~~p~ 129 (129)
T 2kxn_B 117 RIRVDFSITKRPH 129 (129)
T ss_dssp CCEESCCSSSSCC
T ss_pred EEEEEEecCCCCC
Confidence 8999999886553
No 51
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=1.6e-19 Score=138.50 Aligned_cols=85 Identities=19% Similarity=0.322 Sum_probs=76.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++++|||+|||+++|+++|+++|++||.|.+|+++.+... |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~ 96 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRT---GFSKGYALVEYETHKQALAAKEALNGAEIMG-----Q 96 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTT---SSBCSEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHcCCCEECC-----c
Confidence 3589999999999999999999999999999999866422 5667799999999999999999999999999 8
Q ss_pred cEEEEeecCCCCC
Q 025677 228 FLRLQFSRNPGPR 240 (249)
Q Consensus 228 ~LrV~~ak~~~~r 240 (249)
.|+|+|++.+.++
T Consensus 97 ~l~V~~a~~~~~~ 109 (110)
T 1oo0_B 97 TIQVDWCFVKGPK 109 (110)
T ss_dssp ECEEEESEESSCC
T ss_pred EEEEEEcccCCCC
Confidence 9999999876543
No 52
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=3.6e-19 Score=135.69 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=74.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+.+ |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 98 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRS----GRSLGTADVHFERKADALKAMKQYNGVPLDG-----R 98 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCcceEEEEEECCHHHHHHHHHHhCCCEeCC-----c
Confidence 468999999999999999999999999999999997764 6778899999999999999999999999999 8
Q ss_pred cEEEEeecC
Q 025677 228 FLRLQFSRN 236 (249)
Q Consensus 228 ~LrV~~ak~ 236 (249)
.|+|+|+++
T Consensus 99 ~l~V~~a~s 107 (107)
T 3ulh_A 99 PMNIQLVTS 107 (107)
T ss_dssp ECEEEEECC
T ss_pred EEEEEEeCC
Confidence 999999863
No 53
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=136.18 Aligned_cols=86 Identities=17% Similarity=0.326 Sum_probs=76.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.++.. |+++|||||+|.+.++|++|++. |+..|.+ +
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g-----~ 85 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTT---NQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG-----R 85 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSS---CCEEEEEEEEESSTTHHHHHHHH-CSEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC---CCcceEEEEEECCHHHHHHHHHh-CCCeECC-----E
Confidence 3589999999999999999999999999999999976432 67788999999999999999998 9999999 8
Q ss_pred cEEEEeecCCCCCCC
Q 025677 228 FLRLQFSRNPGPRSV 242 (249)
Q Consensus 228 ~LrV~~ak~~~~r~g 242 (249)
.|+|+|++.+..+..
T Consensus 86 ~l~V~~a~~~~~~~~ 100 (105)
T 2dh8_A 86 NIDPKPCTPRGMQPS 100 (105)
T ss_dssp EEBCCCSCCSSCCTT
T ss_pred EEEEEEccCCCCCCC
Confidence 999999988755443
No 54
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=4.8e-20 Score=137.01 Aligned_cols=83 Identities=12% Similarity=0.146 Sum_probs=69.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCC--CeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG--~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
.+|||+|||+++|+++|+++|++|| .|.+|+++.++.. |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~---g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g-----r 73 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN---GQSKGFALVGVGSEASSKKLMDLLPKRELHG-----Q 73 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTT---CCEEEEEEECC-CHHHHHHHHHHGGGSCSSS-----C
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCC---CccCcEEEEEECCHHHHHHHHHHcCCCeeCC-----E
Confidence 5899999999999999999999999 9999999976532 7788899999999999999999999999999 8
Q ss_pred cEEEEeecCCCCC
Q 025677 228 FLRLQFSRNPGPR 240 (249)
Q Consensus 228 ~LrV~~ak~~~~r 240 (249)
.|+|++++.+...
T Consensus 74 ~i~V~~~~~~~~~ 86 (90)
T 3p5t_L 74 NPVVTPSNKLEHH 86 (90)
T ss_dssp CCEECCC------
T ss_pred EEEEEECCCCccc
Confidence 8999999876543
No 55
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.9e-19 Score=130.79 Aligned_cols=79 Identities=22% Similarity=0.422 Sum_probs=72.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+++ +| ||||+|.+.++|++|++.||+..|.+ +
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g----~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 70 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KN----YGFVHIEDKTAAEDAIRNLHHYKLHG-----V 70 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TT----EEEEEESSHHHHHHHHHHHTTCBCSS-----C
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CC----EEEEEECCHHHHHHHHHHhcCCccCC-----c
Confidence 36899999999999999999999999999999987 13 99999999999999999999999999 8
Q ss_pred cEEEEeecCCCCCCC
Q 025677 228 FLRLQFSRNPGPRSV 242 (249)
Q Consensus 228 ~LrV~~ak~~~~r~g 242 (249)
.|+|+|++.+..+..
T Consensus 71 ~l~v~~a~~~~~~~~ 85 (90)
T 2dnq_A 71 NINVEASKNKSKASS 85 (90)
T ss_dssp BCEEECSSCCCCCCS
T ss_pred EEEEEECCCCCCCCC
Confidence 899999998755543
No 56
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=135.50 Aligned_cols=83 Identities=20% Similarity=0.291 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcC-CCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCce-eCCCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRP-FVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR-MDEDDPD 225 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~-fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~-i~g~~~~ 225 (249)
++++|||+|||+++|+++|+++|++ ||.|.+|+|+.+.+ |+++|||||+|.+.++|++|++.||+.. |.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g---- 79 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQT----GVSKGYGFVKFTDELEQKRALTECQGAVGLGS---- 79 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTT----CCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCC----CCccceEEEEECCHHHHHHHHHHccCCcccCC----
Confidence 3589999999999999999999999 99999999998764 6778899999999999999999999999 998
Q ss_pred CccEEEEeecCCCC
Q 025677 226 SKFLRLQFSRNPGP 239 (249)
Q Consensus 226 ~r~LrV~~ak~~~~ 239 (249)
+.|+|+|++.+..
T Consensus 80 -~~l~v~~a~~~~~ 92 (104)
T 2dhg_A 80 -KPVRLSVAIPKAS 92 (104)
T ss_dssp -SCCCCCBCCCCCS
T ss_pred -EeEEEEEccCCCc
Confidence 7899999977643
No 57
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.3e-19 Score=136.37 Aligned_cols=82 Identities=21% Similarity=0.330 Sum_probs=72.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++|+++|+++|++|| +++|+|+.+++ |+++|||||+|.+.++|++|+ .+|+..|.+ +.
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~----g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g-----r~ 83 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPD----GRVTGEADVEFATHEDAVAAM-AKDKANMQH-----RY 83 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSS----SCEEEEEEEECSSSHHHHHHH-TTSSCCSSS-----SC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCC----CCEeeEEEEEECCHHHHHHHH-HhCCCeECC-----cE
Confidence 58999999999999999999999999 45999987764 778889999999999999999 479999998 88
Q ss_pred EEEEeecCCCCCC
Q 025677 229 LRLQFSRNPGPRS 241 (249)
Q Consensus 229 LrV~~ak~~~~r~ 241 (249)
|+|.++..+....
T Consensus 84 i~V~~~~~~~~~~ 96 (102)
T 1wez_A 84 VELFLNSTAGTSG 96 (102)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEECCCCCCCC
Confidence 9999998765433
No 58
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.3e-19 Score=131.12 Aligned_cols=79 Identities=23% Similarity=0.282 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+++. + ||||+|.+.++|++|++.|||..|.+ +
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------~----~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 72 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-------D----YAFVHMERAEDAVEAIRGLDNTEFQG-----K 72 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------S----EEEEEESCHHHHHHHHHHHTTEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------C----EEEEEECCHHHHHHHHHHhCCCeeCC-----c
Confidence 368999999999999999999999999999999873 2 99999999999999999999999999 8
Q ss_pred cEEEEeecCCCCCCC
Q 025677 228 FLRLQFSRNPGPRSV 242 (249)
Q Consensus 228 ~LrV~~ak~~~~r~g 242 (249)
.|+|+|++.+..+..
T Consensus 73 ~l~V~~a~~~~~~~~ 87 (92)
T 2dgt_A 73 RMHVQLSTSRLRTAS 87 (92)
T ss_dssp EEEEEESSCCCSCCC
T ss_pred EEEEEEccCCCCCCC
Confidence 999999988655443
No 59
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.6e-20 Score=133.90 Aligned_cols=81 Identities=21% Similarity=0.415 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++++|||+|||+++++++|+++|++||.|.+|+++.+... |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 75 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTT---NKCKGYGFVDFDSPSAAQKAVTALKASGVQA-----Q 75 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSS---CSCCSEEEEEESCHHHHHHHHHHHHHHTCCE-----E
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CCcCcEEEEEECCHHHHHHHHHHhcCCeEee-----E
Confidence 3689999999999999999999999999999999876432 5667799999999999999999999999998 7
Q ss_pred cEEEEeecC
Q 025677 228 FLRLQFSRN 236 (249)
Q Consensus 228 ~LrV~~ak~ 236 (249)
.|+++|+++
T Consensus 76 ~~~~~~~~s 84 (85)
T 1x4e_A 76 MAKQSGPSS 84 (85)
T ss_dssp SCCSSCCCC
T ss_pred EEeecCCCC
Confidence 888888654
No 60
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=4.9e-19 Score=136.47 Aligned_cols=82 Identities=23% Similarity=0.460 Sum_probs=74.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++++|||+|||+++|+++|+++|++||.|.+|+++.+... |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g-----~ 96 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSET---GRSKGYGFITFSDSECAKKALEQLNGFELAG-----R 96 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTT---TEEEEEEEEEESCHHHHHHHHHHHTTCCSSS-----S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC---CccceEEEEEECCHHHHHHHHHHcCCCEECC-----E
Confidence 4689999999999999999999999999999999876432 6778899999999999999999999999999 8
Q ss_pred cEEEEeecCC
Q 025677 228 FLRLQFSRNP 237 (249)
Q Consensus 228 ~LrV~~ak~~ 237 (249)
.|+|+|++.+
T Consensus 97 ~l~V~~a~~k 106 (108)
T 2jrs_A 97 PMKVGHVTER 106 (108)
T ss_dssp CCEEECSCSS
T ss_pred EEEEEEcccC
Confidence 8999999865
No 61
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=137.90 Aligned_cols=81 Identities=21% Similarity=0.310 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 147 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 147 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
.+.++|||+|||+++|+++|+++|++||.|.+|+++.+.. +++|||||+|.+.++|++|++.|||..|.+
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-----~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g----- 96 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-----GSKGFGFVTFENSADADRAREKLHGTVVEG----- 96 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-----BCTTEEEEECCCSHHHHHHHHHHTTCEETT-----
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-----CCceEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 3468999999999999999999999999999999987652 355699999999999999999999999999
Q ss_pred ccEEEEeecCC
Q 025677 227 KFLRLQFSRNP 237 (249)
Q Consensus 227 r~LrV~~ak~~ 237 (249)
+.|+|+|++.+
T Consensus 97 ~~l~V~~a~~~ 107 (109)
T 2err_A 97 RKIEVNNATAR 107 (109)
T ss_dssp EECEEEECCCS
T ss_pred EEEEEEECCCC
Confidence 89999999864
No 62
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.8e-19 Score=137.76 Aligned_cols=86 Identities=13% Similarity=0.205 Sum_probs=76.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+... |+++|||||+|.+.++|++|++. ++..|.+ +
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g-----~ 96 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPAS---KRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG-----R 96 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTT---SSCCSEEEEECSSHHHHHHHHTS-CSEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCC---CCcCceEEEEeCCHHHHHHHHHh-CCcEECC-----E
Confidence 4589999999999999999999999999999999976432 56667999999999999999988 9999999 8
Q ss_pred cEEEEeecCCCCCCC
Q 025677 228 FLRLQFSRNPGPRSV 242 (249)
Q Consensus 228 ~LrV~~ak~~~~r~g 242 (249)
.|+|+|++.+..+..
T Consensus 97 ~l~V~~a~~~~~~~~ 111 (116)
T 1x4b_A 97 VVEPKRAVAREESGS 111 (116)
T ss_dssp EEEEECCSSCCCCCC
T ss_pred EEEEEECCCCccCCC
Confidence 999999988755443
No 63
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.8e-19 Score=134.25 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=73.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++++++|+++|++||.|.+++++.++. .|+++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-----~~ 86 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE---KGMPTGEAMVAFESRDEATAAVIDLNDRPIGS-----RK 86 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECS---SSCEEEEEEEEESCHHHHHHHHHHTTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECC---CCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC-----eE
Confidence 48999999999999999999999999998877775432 26788899999999999999999999999999 89
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|+|+|++.+
T Consensus 87 l~V~~a~~~ 95 (98)
T 2cqp_A 87 VKLVLGSGP 95 (98)
T ss_dssp CEEEESSCS
T ss_pred EEEEEcCCC
Confidence 999999864
No 64
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.1e-19 Score=132.66 Aligned_cols=82 Identities=17% Similarity=0.231 Sum_probs=73.9
Q ss_pred CCcEEEEcCCCCCCCHHHHH----HHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 223 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~----~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 223 (249)
..++|||+|||+++++++|+ ++|++||.|.+|+|+.++.. ++||||+|.+.++|++|++.|||..|.+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~------rg~afV~f~~~~~A~~Ai~~l~g~~~~g-- 79 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY------QLKAVVQMENLQDAIGAVNSLHRYKIGS-- 79 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST------TCCEEEEESSHHHHHHHHHHHTTEEETT--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC------CeEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 35899999999999999999 99999999999999976543 3499999999999999999999999999
Q ss_pred CCCccEEEEeecCCCCC
Q 025677 224 PDSKFLRLQFSRNPGPR 240 (249)
Q Consensus 224 ~~~r~LrV~~ak~~~~r 240 (249)
+.|+|+|++....+
T Consensus 80 ---r~l~V~~a~~~~~~ 93 (96)
T 2dgx_A 80 ---KKILVSLATGASGP 93 (96)
T ss_dssp ---EEEEEEECCCSSCC
T ss_pred ---eEEEEEEcCCCCCC
Confidence 89999999876544
No 65
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.79 E-value=6.7e-19 Score=135.31 Aligned_cols=83 Identities=19% Similarity=0.327 Sum_probs=72.6
Q ss_pred CCcEEEEcCCCCC-CCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 148 ASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 148 ~~~tLfVgnLp~~-~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
.+++|||+|||++ +|+++|+++|++||.|.+|++ ++| ||||+|.+.++|++|++.|||..|.+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g----~afV~f~~~~~A~~A~~~l~g~~~~g----- 89 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKG----YAFVQYSNERHARAAVLGENGRVLAG----- 89 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETT----EEEEECSSSHHHHHHHHHHTTCEETT-----
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCC----EEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 3589999999999 999999999999999999988 113 99999999999999999999999999
Q ss_pred ccEEEEeecCCCCCCCCCCC
Q 025677 227 KFLRLQFSRNPGPRSVFGAR 246 (249)
Q Consensus 227 r~LrV~~ak~~~~r~g~g~r 246 (249)
+.|+|+|++.+..+..+.++
T Consensus 90 ~~l~V~~a~~~~~~~~~~~~ 109 (110)
T 1wf1_A 90 QTLDINMAGEPKPDRSGPSS 109 (110)
T ss_dssp EECCEEESCCCCSCCCCCCC
T ss_pred eEEEEEECCCCCCCCCCCCC
Confidence 89999999876554443333
No 66
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.9e-18 Score=130.96 Aligned_cols=83 Identities=20% Similarity=0.287 Sum_probs=73.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++++++|+++|++||.|.+|+|+.+... |+++|||||+|.+.++|++|++ ++..|.+ +
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~--~~~~~~g-----~ 83 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKT---GHSKGFGFVRFTEYETQVKVMS--QRHMIDG-----R 83 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSS---CSEEEEEEEEESSHHHHHHHHH--SCEEETT-----E
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCC---CCccceEEEEECCHHHHHHHHH--cCCeeCC-----e
Confidence 3589999999999999999999999999999999876432 6788899999999999999998 5788888 8
Q ss_pred cEEEEeecCCCCC
Q 025677 228 FLRLQFSRNPGPR 240 (249)
Q Consensus 228 ~LrV~~ak~~~~r 240 (249)
.|+|+|++.+...
T Consensus 84 ~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 84 WCDCKLPNSKQSQ 96 (103)
T ss_dssp EEEEECCCTTCCC
T ss_pred EEEEEecCCCCcC
Confidence 9999999886443
No 67
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-18 Score=133.07 Aligned_cols=81 Identities=15% Similarity=0.273 Sum_probs=73.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++|+++|+++|++||.|.+|+|+.+ | ||||+|.+.++|++|++.|||..|.++....+.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g----~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------G----TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------T----EEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------C----EEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 589999999999999999999999999999999875 3 999999999999999999999999985544568
Q ss_pred EEEEeecCCCC
Q 025677 229 LRLQFSRNPGP 239 (249)
Q Consensus 229 LrV~~ak~~~~ 239 (249)
|+|+|++.+..
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99999987643
No 68
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-18 Score=129.84 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCC--CCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPF--VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 225 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~f--G~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~ 225 (249)
++++|||+|||+++|+++|+++|++| |.|.+|++. +| ||||+|.+.++|++|++.|||..|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g----~afV~f~~~~~A~~A~~~l~g~~~~g---- 78 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RD----YAFVHFSNREDAVEAMKALNGKVLDG---- 78 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SS----EEEEEESSHHHHHHHHHHHSSEEETT----
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CC----eEEEEeCCHHHHHHHHHHhCCCEeCC----
Confidence 46899999999999999999999999 999988764 13 99999999999999999999999998
Q ss_pred CccEEEEeecCCCCC
Q 025677 226 SKFLRLQFSRNPGPR 240 (249)
Q Consensus 226 ~r~LrV~~ak~~~~r 240 (249)
+.|+|+|++.+..+
T Consensus 79 -~~l~v~~a~~~~~~ 92 (99)
T 2cpd_A 79 -SPIEVTLAKPVDKD 92 (99)
T ss_dssp -EEEEEECCCCCCCC
T ss_pred -cEEEEEECCCCCCC
Confidence 89999999886543
No 69
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-18 Score=134.36 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.++.. ++++|||||+|.+.++|++|++.|++ .|.+ +
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g-----~ 86 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQT---GKSRGYGFVTMADRAAAERACKDPNP-IIDG-----R 86 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSS---CCCCSEEEEEESSHHHHHHHHTCSSC-EETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCC---CccceEEEEEECCHHHHHHHHHhCCC-cCCC-----E
Confidence 3589999999999999999999999999999999876432 56677999999999999999999998 8998 8
Q ss_pred cEEEEeecCC
Q 025677 228 FLRLQFSRNP 237 (249)
Q Consensus 228 ~LrV~~ak~~ 237 (249)
.|+|+|++..
T Consensus 87 ~l~V~~a~~~ 96 (116)
T 2cqd_A 87 KANVNLAYLG 96 (116)
T ss_dssp ECEEEESTTT
T ss_pred EEEEEEcccC
Confidence 9999999753
No 70
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=131.18 Aligned_cols=82 Identities=18% Similarity=0.295 Sum_probs=71.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++++|||+|||+++|+++|+++|++||.| +++.+.+ |+++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 81 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQN----GKSKGYAFIEFASFEDAKEALNSCNKREIEG-----R 81 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSS----SCBCSEEEEECSSHHHHHHHHHHTSSEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCC----CCEeeEEEEEECCHHHHHHHHHHhCCCEeCC-----e
Confidence 36899999999999999999999999976 4554433 5666799999999999999999999999999 8
Q ss_pred cEEEEeecCCCCCC
Q 025677 228 FLRLQFSRNPGPRS 241 (249)
Q Consensus 228 ~LrV~~ak~~~~r~ 241 (249)
.|+|+|++.+..+.
T Consensus 82 ~l~v~~a~~~~~~~ 95 (101)
T 2fc9_A 82 AIRLELQGPRGSPN 95 (101)
T ss_dssp EEEEEECSSCCCCC
T ss_pred EEEEEEcCCCCCCC
Confidence 99999998865433
No 71
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.8e-18 Score=131.56 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHc--CceeCCCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ--GYRMDEDDPD 225 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~Ln--G~~i~g~~~~ 225 (249)
++++|||+|||+++|+++|+++|++||.|.+|+|+.++ | ||||+|++.++|++|++.|+ +..|.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~~~G---- 80 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGK-----N----QAFLELATEEAAITMVNYYSAVTPHLRN---- 80 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHHHSCCEETT----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCC-----C----EEEEEECCHHHHHHHHHHhccCCceECC----
Confidence 46899999999999999999999999999999887642 3 99999999999999999874 678998
Q ss_pred CccEEEEeecCCCCC
Q 025677 226 SKFLRLQFSRNPGPR 240 (249)
Q Consensus 226 ~r~LrV~~ak~~~~r 240 (249)
++|+|+|++....+
T Consensus 81 -r~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 81 -QPIYIQYSNHKELK 94 (101)
T ss_dssp -EECEEEECSCSSCC
T ss_pred -cEEEEEEcCcccCc
Confidence 89999999986544
No 72
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=6.6e-19 Score=145.03 Aligned_cols=86 Identities=19% Similarity=0.317 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++++|||+|||+++|+++|+++|++||.|..|+|+.+... |+++|||||+|.+.++|++||+.|||..|.+ +
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~ 142 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRT---GFSKGYALVEYETHKQALAAKEALNGAEIMG-----Q 142 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---SSEEEEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCC---CcEeeEEEEEECCHHHHHHHHHHhCCCEECC-----E
Confidence 3589999999999999999999999999999999976432 7788899999999999999999999999999 8
Q ss_pred cEEEEeecCCCCCC
Q 025677 228 FLRLQFSRNPGPRS 241 (249)
Q Consensus 228 ~LrV~~ak~~~~r~ 241 (249)
.|+|+|++....+.
T Consensus 143 ~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 143 TIQVDWCFVKGPKR 156 (165)
T ss_dssp ECEEEESEECC---
T ss_pred EEEEEEecCCCCCC
Confidence 99999998765544
No 73
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=128.88 Aligned_cols=80 Identities=21% Similarity=0.337 Sum_probs=73.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
..++|||+|||+++|+++|+++|++| .|.+|+|+.+.+ |+++|||||+|.+.++|++|++ |||..|.+ +
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g-----r 77 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAH----GNKTGYIFVDFSNEEEVKQALK-CNREYMGG-----R 77 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTT----SCEEEEEEEECSSHHHHHHHHH-SCSEEETT-----E
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCC----CCCceEEEEEECCHHHHHHHHH-hCCceeCC-----c
Confidence 35899999999999999999999999 999999998744 6777899999999999999999 99999999 8
Q ss_pred cEEEEeecCCC
Q 025677 228 FLRLQFSRNPG 238 (249)
Q Consensus 228 ~LrV~~ak~~~ 238 (249)
.|+|.|++...
T Consensus 78 ~i~v~~a~~~~ 88 (91)
T 2dgw_A 78 YIEVFREKSGP 88 (91)
T ss_dssp EEEEEEESSCC
T ss_pred EEEEEECCcCC
Confidence 99999998753
No 74
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=130.70 Aligned_cols=80 Identities=26% Similarity=0.405 Sum_probs=72.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++++|||+|||+++|+++|+++|++||.|.+|++..++ | ||||+|.+.++|++|++.|||..|.+ +
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k-----g----~afV~f~~~~~a~~a~~~l~g~~~~g-----~ 79 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK-----G----FGFIRLETRTLAEIAKVELDNMPLRG-----K 79 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT-----T----EEEEECSSSHHHHHHHHHHTTCCBTT-----B
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC-----C----EEEEEECCHHHHHHHHHHhCCCEeCC-----c
Confidence 35899999999999999999999999999999987542 3 99999999999999999999999999 8
Q ss_pred cEEEEeecCCCCCC
Q 025677 228 FLRLQFSRNPGPRS 241 (249)
Q Consensus 228 ~LrV~~ak~~~~r~ 241 (249)
.|+|+|++.+....
T Consensus 80 ~l~v~~a~~~~~~~ 93 (99)
T 2cpj_A 80 QLRVRFACHSASLT 93 (99)
T ss_dssp CCEEEESSCCSCCC
T ss_pred eEEEEEcCCCCCCC
Confidence 89999999875544
No 75
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-19 Score=138.54 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=73.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
..++|||+|||+++|+++|+++|++||.|.+|+|+.++.. |+++|||||+|.+.++|++|+ .|||..|.+ +
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-----~ 94 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNS---RRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG-----V 94 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCS---SSCCCCEEEEESCGGGHHHHH-HHTTEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCC---CccCcEEEEEeCcHHHHHHHH-HcCCCEeCC-----e
Confidence 4589999999999999999999999999999999876532 566679999999999999999 999999999 8
Q ss_pred cEEEEeecCC
Q 025677 228 FLRLQFSRNP 237 (249)
Q Consensus 228 ~LrV~~ak~~ 237 (249)
.|+|+|++..
T Consensus 95 ~l~V~~a~~~ 104 (114)
T 2cq4_A 95 PIIVQASQAE 104 (114)
T ss_dssp EEEEEEHHHH
T ss_pred EEEEEecCCC
Confidence 9999999765
No 76
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=3.2e-19 Score=141.64 Aligned_cols=85 Identities=20% Similarity=0.312 Sum_probs=74.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEE--EEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCc----eeC
Q 025677 147 DASSTLYVEGLPADSTKREVAHIFRPFVGYKE--VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY----RMD 220 (249)
Q Consensus 147 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~--v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~----~i~ 220 (249)
.++++|||+|||+++|+++|+++|++||.|.. |+|+.++.. |+++|||||+|.+. +|++|++.|||. .|+
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~t---g~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQT---QLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSS---SSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCC---CCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34689999999999999999999999999976 898876522 66777999999999 999999999999 999
Q ss_pred CCCCCCccEEEEeecCCCCC
Q 025677 221 EDDPDSKFLRLQFSRNPGPR 240 (249)
Q Consensus 221 g~~~~~r~LrV~~ak~~~~r 240 (249)
+ +.|+|+|++....+
T Consensus 97 g-----r~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 97 G-----KTINVEFAKGSKRD 111 (131)
T ss_dssp G-----CCCCCEECCCSCCC
T ss_pred C-----EEEEEEECCCCCCC
Confidence 8 88999999876443
No 77
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6.8e-19 Score=135.47 Aligned_cols=76 Identities=12% Similarity=0.155 Sum_probs=69.0
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCc--eeCCCCC
Q 025677 148 ASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY--RMDEDDP 224 (249)
Q Consensus 148 ~~~tLfVgnLp~-~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~--~i~g~~~ 224 (249)
++++|||+|||+ ++|+++|+++|++||.|.+|+|+.++ | ||||+|++.++|++|++.||+. .|.+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~~~G--- 81 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI-----N----EAFIEMATTEDAQAAVDYYTTTPALVFG--- 81 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS-----S----CEEEEESSHHHHHHHHHHHHHSCCEETT---
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC-----C----EEEEEECCHHHHHHHHHHHcCCCceECC---
Confidence 468999999999 99999999999999999999998653 3 9999999999999999999875 4888
Q ss_pred CCccEEEEeecCC
Q 025677 225 DSKFLRLQFSRNP 237 (249)
Q Consensus 225 ~~r~LrV~~ak~~ 237 (249)
++|+|+||+..
T Consensus 82 --r~l~V~~a~~~ 92 (102)
T 1x4d_A 82 --KPVRVHLSQKY 92 (102)
T ss_dssp --EECEEEEECCC
T ss_pred --cEEEEEECCCC
Confidence 89999999854
No 78
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=7.1e-19 Score=129.42 Aligned_cols=81 Identities=17% Similarity=0.308 Sum_probs=73.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++|+++|+++|++||.|.+|+++.+... |+++|||||+|.+.++|++|+ .|||..|.+ +.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g-----~~ 76 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFS---GHPKGFAYIEFSDKESVRTSL-ALDESLFRG-----RQ 76 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSS---SSCCEEEEEEESSTHHHHHHG-GGTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCC---CCcceEEEEEECCHHHHHHHH-hcCCCEECC-----cE
Confidence 479999999999999999999999999999999976422 667789999999999999999 999999999 89
Q ss_pred EEEEeecCCC
Q 025677 229 LRLQFSRNPG 238 (249)
Q Consensus 229 LrV~~ak~~~ 238 (249)
|+|+|++.+.
T Consensus 77 l~V~~a~~~~ 86 (89)
T 3ucg_A 77 IKVIPKRTNR 86 (89)
T ss_dssp CEEEETTTTS
T ss_pred EEEEEccCCC
Confidence 9999998753
No 79
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=6.9e-19 Score=135.18 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCce--eCCCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR--MDEDDPD 225 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~--i~g~~~~ 225 (249)
++++|||+|||+++|+++|+++|++||.|.+|+++..+ | ||||+|++.++|++|++.||+.. |.+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k-----g----~AFVef~~~~~A~~Av~~ln~~~~~i~G---- 86 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK-----R----QALVEFEDVLGACNAVNYAADNQIYIAG---- 86 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHHHSCEEETT----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC-----C----EEEEEECCHHHHHHHHHHhcCCCceeCC----
Confidence 46999999999999999999999999999999997532 3 99999999999999999999986 678
Q ss_pred CccEEEEeecCC
Q 025677 226 SKFLRLQFSRNP 237 (249)
Q Consensus 226 ~r~LrV~~ak~~ 237 (249)
++|+|+||+++
T Consensus 87 -r~i~V~~S~~k 97 (100)
T 3r27_A 87 -HPAFVNYSTSQ 97 (100)
T ss_dssp -EEEEEEECSCS
T ss_pred -cEEEEEecccc
Confidence 89999999875
No 80
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-18 Score=132.89 Aligned_cols=79 Identities=15% Similarity=0.160 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCce--eCCCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR--MDEDDPD 225 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~--i~g~~~~ 225 (249)
++++|||+|||+++++++|+++|++||.|.+|+|+.++ | ||||+|++.++|++|++.|++.. |.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~i~G---- 80 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFK-----R----QALVEFENIDSAKECVTFAADVPVYIAG---- 80 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHHHSCCBSSS----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCC-----C----EEEEEECCHHHHHHHHHHhccCCceECC----
Confidence 36899999999999999999999999999999987642 3 99999999999999999997654 777
Q ss_pred CccEEEEeecCCCCC
Q 025677 226 SKFLRLQFSRNPGPR 240 (249)
Q Consensus 226 ~r~LrV~~ak~~~~r 240 (249)
++|+|+|++.+..+
T Consensus 81 -r~l~V~~a~~~~~~ 94 (104)
T 1wex_A 81 -QQAFFNYSTSKRIT 94 (104)
T ss_dssp -SBCEEEECSSSSCC
T ss_pred -EEEEEEEccCcccc
Confidence 89999999876543
No 81
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=130.52 Aligned_cols=78 Identities=19% Similarity=0.421 Sum_probs=71.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeC--CCCCCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD--EDDPDS 226 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~--g~~~~~ 226 (249)
+++|||+|||+++|+++|+++|++||.|.+|++... ++||||+|.+.++|++|++.|||..|. +
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g----- 82 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---------DSFAYIQYESLDAAQAACAKMRGFPLGGPD----- 82 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---------SCCEEEEESSHHHHHHHHHHHTTCBCSSSS-----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---------CCEEEEEECCHHHHHHHHHHHCCCEeCCCC-----
Confidence 589999999999999999999999999999988754 239999999999999999999999999 6
Q ss_pred ccEEEEeecCCCCC
Q 025677 227 KFLRLQFSRNPGPR 240 (249)
Q Consensus 227 r~LrV~~ak~~~~r 240 (249)
+.|+|+|++.+..+
T Consensus 83 ~~l~V~~a~~~~~~ 96 (97)
T 1why_A 83 RRLRVDFAKSGPSS 96 (97)
T ss_dssp CBCEEEECCCCCCC
T ss_pred cEEEEEECCCCCCC
Confidence 78999999886543
No 82
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.2e-18 Score=131.95 Aligned_cols=86 Identities=19% Similarity=0.335 Sum_probs=75.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC---
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP--- 224 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~--- 224 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+.+ |+++|||||+|.+.++|++|++.|||..|++...
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSS----GTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSS----SCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----CCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 358999999999999999999999999999999998763 6777899999999999999999999999965321
Q ss_pred CCccEEEEeecCC
Q 025677 225 DSKFLRLQFSRNP 237 (249)
Q Consensus 225 ~~r~LrV~~ak~~ 237 (249)
..++|+|.|++++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 2378999999854
No 83
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=129.00 Aligned_cols=80 Identities=23% Similarity=0.289 Sum_probs=72.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+++.+ ||||+|.+.++|++|++.|||..|.+ +
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-----------~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 71 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-----------YAFVHMEKEADAKAAIAQLNGKEVKG-----K 71 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-----------CEEEEESCHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-----------EEEEEECCHHHHHHHHHHhCCCEECC-----c
Confidence 3589999999999999999999999999999998732 99999999999999999999999999 8
Q ss_pred cEEEEeecCCCCCCCC
Q 025677 228 FLRLQFSRNPGPRSVF 243 (249)
Q Consensus 228 ~LrV~~ak~~~~r~g~ 243 (249)
.|+|+|++....++++
T Consensus 72 ~l~v~~a~~~~~~~~~ 87 (90)
T 2dnp_A 72 RINVELSTKGQKKSGP 87 (90)
T ss_dssp ECEEEESCCCCCCCSC
T ss_pred EEEEEECCCCCCCCCC
Confidence 9999999987655543
No 84
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=133.58 Aligned_cols=85 Identities=27% Similarity=0.475 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcCCCCe----EEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025677 146 PDASSTLYVEGLPADSTKREVAHIFRPFVGY----KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 221 (249)
Q Consensus 146 ~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i----~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g 221 (249)
..++++|||+|||+++|+++|+++|++||.| ..+++. + |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~----g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 94 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---T----GRMRGQAFITFPNKEIAWQALHLVNGYKLYG 94 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---C----SSSCSEEEEECSSHHHHHHHHHHSTTCBCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---C----CccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3456899999999999999999999999998 455544 2 4556699999999999999999999999988
Q ss_pred CCCCCccEEEEeecCCCCCCC
Q 025677 222 DDPDSKFLRLQFSRNPGPRSV 242 (249)
Q Consensus 222 ~~~~~r~LrV~~ak~~~~r~g 242 (249)
+.|+|+|++.+..+..
T Consensus 95 -----~~l~v~~a~~~~~~~~ 110 (115)
T 2cpx_A 95 -----KILVIEFGKNKKQRSS 110 (115)
T ss_dssp -----CBCEEEECCCCSCCCC
T ss_pred -----cEEEEEEccCCCCCCC
Confidence 8899999998755543
No 85
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=3.8e-19 Score=132.58 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=71.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+++|||+|||+++|+++|+++|++||.|.+++++.++. .|+++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-----r~ 86 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE---KGMPTGEAMVAFESRDEATAAVIDLNDRPIGS-----RK 86 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECT---TSCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCC---CCCEeeEEEEEECCHHHHHHHHHHhCCCeECC-----cE
Confidence 48999999999999999999999999998888776532 26788899999999999999999999999999 89
Q ss_pred EEEEeecC
Q 025677 229 LRLQFSRN 236 (249)
Q Consensus 229 LrV~~ak~ 236 (249)
|+|+++++
T Consensus 87 l~v~~a~s 94 (95)
T 2ek1_A 87 VKLSGPSS 94 (95)
T ss_dssp CEEECCC-
T ss_pred EEEEeccC
Confidence 99999864
No 86
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=1.1e-18 Score=136.57 Aligned_cols=82 Identities=15% Similarity=0.299 Sum_probs=74.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++|+++|+++|++||.|.+|+++.++.. |+++|||||+|.+.++|++|+ .|||..|.+ +.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-----~~ 106 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFS---GHPKGYAYIEFAERNSVDAAV-AMDETVFRG-----RT 106 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTT---SSCEEEEEEEESSHHHHHHHH-TTTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CCcccEEEEEECCHHHHHHHH-hcCCCeECC-----eE
Confidence 589999999999999999999999999999999876422 677889999999999999999 899999999 89
Q ss_pred EEEEeecCCCC
Q 025677 229 LRLQFSRNPGP 239 (249)
Q Consensus 229 LrV~~ak~~~~ 239 (249)
|+|+|++.+.+
T Consensus 107 l~V~~a~~~~~ 117 (124)
T 2jwn_A 107 IKVLPKRTNMP 117 (124)
T ss_dssp CEEEESSCCCS
T ss_pred EEEEECCCCCC
Confidence 99999987544
No 87
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6e-19 Score=136.64 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=70.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcC--ceeCCCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG--YRMDEDDPD 225 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG--~~i~g~~~~ 225 (249)
++++|||+|||+++||++|+++|++||.|++|+|+.++ | ||||+|++.++|++|++.|++ ..|.+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k-----G----faFVeF~~~~~A~~Ai~~l~~~~~~l~G---- 81 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-----N----QAFIEMNTEEAANTMVNYYTSVTPVLRG---- 81 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHTTSCCEETT----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC-----C----EEEEEECCHHHHHHHHHHhccCCceECC----
Confidence 36899999999999999999999999999999998652 4 999999999999999999874 78998
Q ss_pred CccEEEEeecCCCCC
Q 025677 226 SKFLRLQFSRNPGPR 240 (249)
Q Consensus 226 ~r~LrV~~ak~~~~r 240 (249)
++|+|+||+.+..+
T Consensus 82 -r~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 82 -QPIYIQFSNHKELK 95 (105)
T ss_dssp -EECCBCCCSSSSCC
T ss_pred -EEEEEEEcCCCCCC
Confidence 89999999876443
No 88
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=8.3e-19 Score=139.85 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCCCCHHHHH----HHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 223 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~----~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 223 (249)
++++|||+|||+++++++|+ ++|++||.|.+|.+.. + ++++|||||+|.+.++|++|++.|||..|.+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~----~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g-- 99 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--S----DDNSGKAYIVFATQESAQAFVEAFQGYPFQG-- 99 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--C----CSSCCCEEEEESSHHHHHHHHHHSTTCCCTT--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--C----CCcCCEEEEEECCHHHHHHHHHHHCCCEeCC--
Confidence 46899999999999999876 6999999999987753 2 4556799999999999999999999999999
Q ss_pred CCCccEEEEeecCCC
Q 025677 224 PDSKFLRLQFSRNPG 238 (249)
Q Consensus 224 ~~~r~LrV~~ak~~~ 238 (249)
++|+|+||+.+.
T Consensus 100 ---r~l~V~~a~~~~ 111 (127)
T 2a3j_A 100 ---NPLVITFSETPQ 111 (127)
T ss_dssp ---SCCEEEECCCCC
T ss_pred ---CEEEEEEccCcc
Confidence 889999998753
No 89
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.77 E-value=2.3e-18 Score=126.52 Aligned_cols=78 Identities=18% Similarity=0.363 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+++.+... |+++|||||+|.+.++|++|++ +++..|.+ +
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g-----~ 80 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT---GRSRGFGFILFKDAASVEKVLD-QKEHRLDG-----R 80 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTT---CCEEEEEEEEESSTHHHHHHHH-SSCEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCC---CccccEEEEEECCHHHHHHHHH-hCCCEECC-----E
Confidence 3589999999999999999999999999999999876432 6788899999999999999995 58889999 8
Q ss_pred cEEEEee
Q 025677 228 FLRLQFS 234 (249)
Q Consensus 228 ~LrV~~a 234 (249)
.|+|++|
T Consensus 81 ~i~v~~A 87 (87)
T 3s7r_A 81 VIDPKKA 87 (87)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9999986
No 90
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.6e-19 Score=134.83 Aligned_cols=82 Identities=21% Similarity=0.389 Sum_probs=75.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++++++|+++|++||.|.+|+++.+... |+++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 79 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRET---GKPKGYGFCEYQDQETALSAMRNLNGREFSG-----RA 79 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTT---TEEEEEEEEECSCHHHHHHHHHHSSSBSCSS-----SC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCC---CccceEEEEEECCHHHHHHHHHHhCCCeeCC-----cE
Confidence 589999999999999999999999999999999876422 6778899999999999999999999999998 88
Q ss_pred EEEEeecCCC
Q 025677 229 LRLQFSRNPG 238 (249)
Q Consensus 229 LrV~~ak~~~ 238 (249)
|+|+|++.+.
T Consensus 80 l~v~~a~~~~ 89 (104)
T 1p1t_A 80 LRVDNAASEK 89 (104)
T ss_dssp BEEEETTCTT
T ss_pred EEEEeCCCcc
Confidence 9999998764
No 91
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=1.7e-18 Score=133.71 Aligned_cols=82 Identities=22% Similarity=0.431 Sum_probs=73.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025677 145 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 224 (249)
Q Consensus 145 p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 224 (249)
|+.++++|||+|||+++|+++|+++|++||.|.+|+++.+. +++|||||+|.+.++|++|++.|||..|.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 74 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP------ETRGTAYVVYEDIFDAKNAVDHLSGFNVSN--- 74 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST------TTTTCEEEEESSHHHHHHHHHHHTTCBSSS---
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC------CCCcEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 34457899999999999999999999999999999998642 335699999999999999999999999998
Q ss_pred CCccEEEEeecCC
Q 025677 225 DSKFLRLQFSRNP 237 (249)
Q Consensus 225 ~~r~LrV~~ak~~ 237 (249)
+.|+|+|++.+
T Consensus 75 --~~l~v~~a~~~ 85 (115)
T 3lqv_A 75 --RYLVVLYYNAN 85 (115)
T ss_dssp --CBCEEEECCHH
T ss_pred --eEEEEEEecCC
Confidence 88999999754
No 92
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=4e-19 Score=134.66 Aligned_cols=83 Identities=20% Similarity=0.315 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCC
Q 025677 146 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 225 (249)
Q Consensus 146 ~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~ 225 (249)
....++|||+|||+++++++|+++|++|| |.+|+|+.+.. ..|+++|||||+|.+.++|++|+ .|||..|.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~--~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g---- 87 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS--NPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---- 87 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTT--TTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT----
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCC--cCCccCeEEEEEECCHHHHHHHH-hcCCCEECC----
Confidence 34569999999999999999999999999 99999987641 12566779999999999999999 899999999
Q ss_pred CccEEEEeecCC
Q 025677 226 SKFLRLQFSRNP 237 (249)
Q Consensus 226 ~r~LrV~~ak~~ 237 (249)
+.|+|+|++..
T Consensus 88 -~~l~V~~a~~~ 98 (100)
T 2j76_E 88 -RRIRVDVADQA 98 (100)
T ss_dssp -BCCCCEECCCS
T ss_pred -eEEEEEeccCC
Confidence 88999999764
No 93
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.77 E-value=2.1e-18 Score=140.10 Aligned_cols=86 Identities=21% Similarity=0.328 Sum_probs=76.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
...+|||+|||+++|+++|+++|++||.|.+|+|+.+.. .|+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 140 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY---TKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG-----R 140 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSS---CTTSCCEEEEEESBHHHHHHHHHHSTTEESSS-----S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCccceEEEEEECCHHHHHHHHHHhCCCEECC-----e
Confidence 358999999999999999999999999999999987642 26667799999999999999999999999998 8
Q ss_pred cEEEEeecCCCCCC
Q 025677 228 FLRLQFSRNPGPRS 241 (249)
Q Consensus 228 ~LrV~~ak~~~~r~ 241 (249)
.|+|+|++.+.++.
T Consensus 141 ~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 141 ELRVQMARYGRPPD 154 (158)
T ss_dssp EEEEEEECCSSCCC
T ss_pred EEEEEECCCCCCCC
Confidence 99999999865543
No 94
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=133.47 Aligned_cols=79 Identities=23% Similarity=0.414 Sum_probs=71.4
Q ss_pred CCcEEEEcCCCCCC------CHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025677 148 ASSTLYVEGLPADS------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 221 (249)
Q Consensus 148 ~~~tLfVgnLp~~~------teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g 221 (249)
.+++|||+|||+++ |+++|+++|++||.|.+|+|+ ..+ |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~----g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EED----GKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBT----TBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCC----CCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 35899999999999 789999999999999999987 333 6677799999999999999999999999999
Q ss_pred CCCCCc-cEEEEeecC
Q 025677 222 DDPDSK-FLRLQFSRN 236 (249)
Q Consensus 222 ~~~~~r-~LrV~~ak~ 236 (249)
+ .|+|+|++.
T Consensus 89 -----~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 -----QHTFRVNLFTD 99 (105)
T ss_dssp -----TCEEEEECSCC
T ss_pred -----CceEEEEEcch
Confidence 7 899999975
No 95
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=128.90 Aligned_cols=81 Identities=22% Similarity=0.345 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCC-eEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcC-ceeCCCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVG-YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG-YRMDEDDPD 225 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~-i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG-~~i~g~~~~ 225 (249)
+.++|||+|||+++|+++|+++|++||. |..+.+.. +| ||||+|.+.++|++|++.||| ..|.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~------~g----~afV~f~~~~~A~~A~~~l~g~~~~~g---- 72 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK------SG----YAFVDYPDQNWAIRAIETLSGKVELHG---- 72 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE------TT----EEEECCSCHHHHHHHHHHHTTTCEETT----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC------CC----EEEEEECCHHHHHHHHHHccCCeeECC----
Confidence 3589999999999999999999999999 55555532 13 999999999999999999999 99999
Q ss_pred CccEEEEeecCCCCCCCC
Q 025677 226 SKFLRLQFSRNPGPRSVF 243 (249)
Q Consensus 226 ~r~LrV~~ak~~~~r~g~ 243 (249)
+.|+|+|++.+..++.+
T Consensus 73 -~~l~v~~a~~~~~~~~~ 89 (93)
T 2cqh_A 73 -KIMEVDYSVSKKLRSSG 89 (93)
T ss_dssp -EECEEEECCCCCCCCCS
T ss_pred -EEEEEEEccCccccCCC
Confidence 89999999987655543
No 96
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=7.1e-19 Score=133.53 Aligned_cols=81 Identities=20% Similarity=0.278 Sum_probs=72.7
Q ss_pred CcEEEEcCCCC------CCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025677 149 SSTLYVEGLPA------DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 222 (249)
Q Consensus 149 ~~tLfVgnLp~------~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~ 222 (249)
+++|||+|||+ ++++++|+++|++||.|.+|+|+.++.. |+++|||||+|.+.++|++|++.|||..|.+.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~t---g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEAT---GKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTT---TEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCC---CccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 58999999999 9999999999999999999999876532 66777999999999999999999999999972
Q ss_pred CCCCccEEEEeecC
Q 025677 223 DPDSKFLRLQFSRN 236 (249)
Q Consensus 223 ~~~~r~LrV~~ak~ 236 (249)
+.|+|+|++.
T Consensus 83 ----r~l~V~~a~~ 92 (100)
T 3ns6_A 83 ----HRLFLYTMKD 92 (100)
T ss_dssp ----CBCEEEESHH
T ss_pred ----eEEEEEECch
Confidence 5799999864
No 97
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=142.37 Aligned_cols=80 Identities=13% Similarity=0.181 Sum_probs=73.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCC--CeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG--~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
.++|||+|||+++|+++|+++|++|| .|.+|+|+.++.. |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~t---g~skGfaFV~f~~~~~A~~Ai~~lng~~~~G----- 126 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRAN---GQSKGYAEVVVASENSVHKLLELLPGKVLNG----- 126 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTT---CCEEEEEEEEESCHHHHHHHHHHSTTCEETT-----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 57999999999999999999999999 9999999976532 7888999999999999999999999999999
Q ss_pred ccEEEEeecC
Q 025677 227 KFLRLQFSRN 236 (249)
Q Consensus 227 r~LrV~~ak~ 236 (249)
+.|+|+|++.
T Consensus 127 r~l~V~~a~~ 136 (156)
T 3n9u_C 127 EKVDVRPATR 136 (156)
T ss_dssp EECEEEECCH
T ss_pred eEeEEEEcCC
Confidence 8999999964
No 98
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.76 E-value=4.3e-18 Score=129.30 Aligned_cols=74 Identities=19% Similarity=0.416 Sum_probs=68.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+++|||+|||+++|+++|+++|++||.|.+|+++. | ||||+|.+.++|++|++.||+..|.+ +.
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------~----~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 74 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-------D----YAFIHFDERDGAVKAMEEMNGKDLEG-----EN 74 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------S----CEEEEESSHHHHHHHHHHHTTEEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------C----EEEEEeCCHHHHHHHHHHHCCCccCC-----CE
Confidence 58999999999999999999999999999998862 2 99999999999999999999999999 89
Q ss_pred EEEEeecCCC
Q 025677 229 LRLQFSRNPG 238 (249)
Q Consensus 229 LrV~~ak~~~ 238 (249)
|+|+|++.+.
T Consensus 75 l~v~~a~~~~ 84 (103)
T 2dgu_A 75 IEIVFAKPPD 84 (103)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEcCCCc
Confidence 9999998753
No 99
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=2.1e-18 Score=132.99 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 147 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 147 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
.+.++|||+|||+++|+++|+++|++||.|.+|+|+.+... |+++|||||+|.+.++|++|++.+ +..|.+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~t---g~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g----- 93 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT---KRSRGFGFVTFMDQAGVDKVLAQS-RHELDS----- 93 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTT---CCCTTCEEEEESSHHHHHHHHHSS-CEEETT-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCC---CCcCcEEEEEECCHHHHHHHHHHC-CCcCCC-----
Confidence 34689999999999999999999999999999999876432 566779999999999999999876 588998
Q ss_pred ccEEEEeecCCCC
Q 025677 227 KFLRLQFSRNPGP 239 (249)
Q Consensus 227 r~LrV~~ak~~~~ 239 (249)
+.|+|+|++....
T Consensus 94 ~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 94 KTIDPKVAFPRRA 106 (109)
T ss_dssp EEEEEEECCCCCC
T ss_pred EEEEEEEccCCCC
Confidence 8999999987544
No 100
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.8e-18 Score=134.28 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=71.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcC--ceeCCCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG--YRMDEDDPD 225 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG--~~i~g~~~~ 225 (249)
++++|||+|||+++||++|+++|++||.|++|+|+.++ | ||||+|++.++|++|++.|++ ..|.+
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k-----G----~AFVeF~~~e~A~~Ai~~l~~~~~~l~G---- 96 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-----N----QAFIEMNTEEAANTMVNYYTSVTPVLRG---- 96 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG-----T----EEEEECSCHHHHHHHHHHHHHHCCCBTT----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHhccCCceECC----
Confidence 36899999999999999999999999999999998652 3 999999999999999999984 67888
Q ss_pred CccEEEEeecCCCCCC
Q 025677 226 SKFLRLQFSRNPGPRS 241 (249)
Q Consensus 226 ~r~LrV~~ak~~~~r~ 241 (249)
++|+|+||+....+.
T Consensus 97 -r~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 97 -QPIYIQFSNHKELKT 111 (119)
T ss_dssp -BCCEEEECSSSSCCC
T ss_pred -eEEEEEEccCCCCCc
Confidence 899999998865443
No 101
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.1e-18 Score=125.11 Aligned_cols=73 Identities=22% Similarity=0.378 Sum_probs=68.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHH-cCceeCCCCCCCc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL-QGYRMDEDDPDSK 227 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~L-nG~~i~g~~~~~r 227 (249)
.++|||+|||+++|+++|+++|++||.|.+|+++.++ +||||+|.+.++|++|++.| ++..+.+ +
T Consensus 12 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k---------g~afV~f~~~~~A~~a~~~l~~~~~~~g-----~ 77 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ---------QCAFIQFATRQAAEVAAEKSFNKLIVNG-----R 77 (85)
T ss_dssp CCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG---------TEEEEEESSHHHHHHHHHTTTTTCEETT-----E
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC---------CEEEEEECCHHHHHHHHHHhcCCeeECC-----C
Confidence 5899999999999999999999999999999998642 39999999999999999999 9999999 8
Q ss_pred cEEEEeec
Q 025677 228 FLRLQFSR 235 (249)
Q Consensus 228 ~LrV~~ak 235 (249)
.|+|+|||
T Consensus 78 ~l~v~~ak 85 (85)
T 2ytc_A 78 RLNVKWGR 85 (85)
T ss_dssp ECCEEECC
T ss_pred EEEEEecC
Confidence 89999986
No 102
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.76 E-value=4.4e-18 Score=135.02 Aligned_cols=78 Identities=21% Similarity=0.375 Sum_probs=70.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++|+++|+++|++||.|.+|+++.++.. |+++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 63 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 134 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET---EKHRGFAFVEFELAEDAAAAIDNMNESELFG-----RT 134 (140)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTT---CCCCSEEEEEESCHHHHHHHHHHSTEEEETT-----EE
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCC---CCcCcEEEEEECCHHHHHHHHHHhCCCEECC-----EE
Confidence 589999999999999999999999999999999876422 5667799999999999999999999999999 89
Q ss_pred EEEEee
Q 025677 229 LRLQFS 234 (249)
Q Consensus 229 LrV~~a 234 (249)
|+|+||
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999986
No 103
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=9.1e-19 Score=140.31 Aligned_cols=85 Identities=21% Similarity=0.334 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++++|||+|||+++|+++|+++|++||.|.+|+|+.+... |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~---g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g-----~ 117 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYT---KESRGFAFVRFHDKRDAEDAMDAMDGAVLDG-----R 117 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSS---SSCCSCCEEECSCHHHHHHHHTTTTTCCSSS-----S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHcCCCEECC-----E
Confidence 3589999999999999999999999999999999865422 5667799999999999999999999999999 8
Q ss_pred cEEEEeecCCCCC
Q 025677 228 FLRLQFSRNPGPR 240 (249)
Q Consensus 228 ~LrV~~ak~~~~r 240 (249)
.|+|+|++...++
T Consensus 118 ~l~V~~a~~~~~~ 130 (135)
T 2lea_A 118 ELRVQMARYGRPP 130 (135)
T ss_dssp CCEEEECCCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 8999999876544
No 104
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.76 E-value=1.4e-18 Score=129.99 Aligned_cols=80 Identities=24% Similarity=0.378 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCCCCHHHHH----HHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 223 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~----~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 223 (249)
++++|||+|||+++++++|+ ++|++||.|.+|++... |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-- 78 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS------LKMRGQAFVIFKEVSSATNALRSMQGFPFYD-- 78 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH------HHHTTCEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC------CCcCcEEEEEeCCHHHHHHHHHHhCCCEECC--
Confidence 36899999999999999999 99999999999988731 4555699999999999999999999999998
Q ss_pred CCCccEEEEeecCCC
Q 025677 224 PDSKFLRLQFSRNPG 238 (249)
Q Consensus 224 ~~~r~LrV~~ak~~~ 238 (249)
+.|+|+|++.+.
T Consensus 79 ---~~l~v~~a~~~~ 90 (97)
T 1nu4_A 79 ---KPMRIQYAKTDS 90 (97)
T ss_dssp ---EECEEEECSSCC
T ss_pred ---cEEEEEEccCCC
Confidence 899999998754
No 105
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=129.06 Aligned_cols=80 Identities=23% Similarity=0.382 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|..+ .. .|+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 81 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQ----DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG-----R 81 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EE----TTEEEEEEEEEESSHHHHHHHHHHTTEEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CC----CCCcceEEEEEECCHHHHHHHHHHhCCCEECC-----e
Confidence 46899999999999999999999999887655 22 26777899999999999999999999999999 8
Q ss_pred cEEEEeecCCCCC
Q 025677 228 FLRLQFSRNPGPR 240 (249)
Q Consensus 228 ~LrV~~ak~~~~r 240 (249)
.|+|+|++.+..+
T Consensus 82 ~l~v~~a~~~~~~ 94 (96)
T 1fjc_A 82 SVSLYYTGEKGGT 94 (96)
T ss_dssp EEEEEECSSSCCC
T ss_pred EEEEEEcCCCCCC
Confidence 9999999876544
No 106
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=2.8e-17 Score=128.74 Aligned_cols=84 Identities=21% Similarity=0.290 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 147 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 147 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
.++++|||+|||+++++++|+++|++||.|.+|+|+.+.+ |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~----g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----- 103 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRS----GRSLGTADVHFERRADALKAMKQYKGVPLDG----- 103 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSS----SSCCSEEEEEESSHHHHHHHHHHHTTEESSS-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCC----CCEeeEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 3468999999999999999999999999999999997764 5566799999999999999999999999998
Q ss_pred ccEEEEeecCCCC
Q 025677 227 KFLRLQFSRNPGP 239 (249)
Q Consensus 227 r~LrV~~ak~~~~ 239 (249)
+.|+|+||.....
T Consensus 104 ~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 104 RPMDIQLVASQID 116 (124)
T ss_dssp CEEEEEEECCTTC
T ss_pred cEEEEEEeCCCCC
Confidence 8899999987643
No 107
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=2.3e-18 Score=130.03 Aligned_cols=78 Identities=24% Similarity=0.342 Sum_probs=70.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 229 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 229 (249)
++|||+|||+++|+++|+++|++||.|.+|+++.+ + +|||||+|.+.++|++|++.|||..+.+ +.|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~----~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~l 67 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----P----PGFAFVEFEDPRDAEDAVRGLDGKVICG-----SRV 67 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----S----SSEEEEECSSHHHHHHHHHHHHHSCSSS-----CCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----C----CCEEEEEECCHHHHHHHHHHHCCCeECC-----cEE
Confidence 48999999999999999999999999999999876 2 2499999999999999999999999998 789
Q ss_pred EEEeecCCCCC
Q 025677 230 RLQFSRNPGPR 240 (249)
Q Consensus 230 rV~~ak~~~~r 240 (249)
+|+|++.+..+
T Consensus 68 ~V~~a~~~~~~ 78 (101)
T 2hvz_A 68 RVELSTGMPRR 78 (101)
T ss_dssp EEEESSSCCCS
T ss_pred EEEEccCCCCc
Confidence 99999886543
No 108
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=7.2e-20 Score=142.02 Aligned_cols=84 Identities=21% Similarity=0.341 Sum_probs=74.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEE--------EEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKE--------VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 220 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~--------v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~ 220 (249)
+++|||+|||+++++++|+++|++||.|.+ |+|+.++.. |+++|||||+|.+.++|++|++.|||..|.
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRET---GKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 589999999999999999999999999998 778765322 566779999999999999999999999999
Q ss_pred CCCCCCccEEEEeecCCCCC
Q 025677 221 EDDPDSKFLRLQFSRNPGPR 240 (249)
Q Consensus 221 g~~~~~r~LrV~~ak~~~~r 240 (249)
+ +.|+|+|++.+..+
T Consensus 84 g-----~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 G-----NPIKVSFATRRADF 98 (116)
Confidence 8 88999999886443
No 109
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2e-18 Score=135.61 Aligned_cols=81 Identities=21% Similarity=0.339 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEe-eCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025677 146 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV-IKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 224 (249)
Q Consensus 146 ~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~-~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 224 (249)
..+..+|||+|||+++|+++|+++|++||.|.++.++ .+.+ |+++|||||+|.+.++|++||+ |||..|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~----g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g--- 93 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPN----GKATGEGFVEFRNEADYKAALC-RHKQYMGN--- 93 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTT----SSEEEEEEEEBSSSHHHHHHHT-SCSBCSTT---
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCC----CCCCeEEEEEECCHHHHHHHHH-hCCCeECC---
Confidence 3346899999999999999999999999999885444 4443 6778899999999999999999 99999999
Q ss_pred CCccEEEEeecC
Q 025677 225 DSKFLRLQFSRN 236 (249)
Q Consensus 225 ~~r~LrV~~ak~ 236 (249)
+.|+|.+++.
T Consensus 94 --r~i~V~~a~~ 103 (124)
T 1wel_A 94 --RFIQVHPITK 103 (124)
T ss_dssp --SCBEEEEECH
T ss_pred --cEEEEEECCH
Confidence 8899999964
No 110
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.5e-18 Score=131.35 Aligned_cols=82 Identities=15% Similarity=0.200 Sum_probs=72.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCC-eEEEEEe-eCCCccCCCccceEEEEEeCCHHHHHHHHHHHc--CceeCCCCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVG-YKEVRLV-IKESKLRGGDPLILCFVDFENPACAATALSALQ--GYRMDEDDP 224 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~-i~~v~l~-~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~Ln--G~~i~g~~~ 224 (249)
.++|||+|||+++|+++|+++|++||. |.+|+++ .+.. .|+++|||||+|.+.++|++|++.|| +..+.+
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~---~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g--- 81 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAAD---KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--- 81 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCT---TTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT---
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCC---CCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC---
Confidence 589999999999999999999999998 9999887 3332 25667799999999999999999996 589998
Q ss_pred CCccEEEEeecCCC
Q 025677 225 DSKFLRLQFSRNPG 238 (249)
Q Consensus 225 ~~r~LrV~~ak~~~ 238 (249)
+.|+|+|++...
T Consensus 82 --~~l~V~~a~~~~ 93 (109)
T 2dis_A 82 --HQIAVDWAEPEI 93 (109)
T ss_dssp --BCCEEEESCSSC
T ss_pred --CeEEEEEcCCCC
Confidence 889999998753
No 111
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=4.3e-18 Score=133.14 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCC---eEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVG---YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 224 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~---i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 224 (249)
..++|||+|||+++|+++|+++|++||. |.+|+|+.++. |+++|||||+|.+.++|++|++ ||+..|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~----g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g--- 87 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE----GRQSGEAFVELESEDDVKLALK-KDRESMGH--- 87 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS----SCEEEEEEEEBSSHHHHHHHGG-GTTEEETT---
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC----CCCCeEEEEEECCHHHHHHHHh-cCCCeECC---
Confidence 3589999999999999999999999999 89999997754 6778899999999999999999 99999999
Q ss_pred CCccEEEEeecC
Q 025677 225 DSKFLRLQFSRN 236 (249)
Q Consensus 225 ~~r~LrV~~ak~ 236 (249)
+.|+|.+++.
T Consensus 88 --r~i~V~~a~~ 97 (118)
T 2db1_A 88 --RYIEVFKSHR 97 (118)
T ss_dssp --EEEEEEEECH
T ss_pred --eEEEEEECCH
Confidence 8999999863
No 112
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=127.33 Aligned_cols=82 Identities=20% Similarity=0.296 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEE-EEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKE-VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~-v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
..++|||+|||+++|+++|+++|++||.|.+ |+|+.+.+ |+++|||||+|.++++|++|++. |+..|.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~----g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g----- 83 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ----GRSTGEAFVQFASQEIAEKALKK-HKERIGH----- 83 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSS----SCBCSEEEEEESSHHHHHHHHTT-TTCCSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCC----CCcceEEEEEECCHHHHHHHHHh-CcchhCC-----
Confidence 3589999999999999999999999999987 77776654 56667999999999999999987 9999998
Q ss_pred ccEEEEeecCCCC
Q 025677 227 KFLRLQFSRNPGP 239 (249)
Q Consensus 227 r~LrV~~ak~~~~ 239 (249)
+.|+|.++.....
T Consensus 84 r~i~v~~~~~~~~ 96 (104)
T 1wg5_A 84 RYIEIFKSSRAEV 96 (104)
T ss_dssp SCCEEEEECTTTS
T ss_pred cEEEEEECCHHHH
Confidence 8899999976543
No 113
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1.5e-18 Score=124.12 Aligned_cols=75 Identities=19% Similarity=0.341 Sum_probs=67.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEE
Q 025677 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 230 (249)
Q Consensus 151 tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~Lr 230 (249)
+|||+|||+++|+++|+++|++||.|.+|+++.++.. |+++|||||+|.+.++|++|++ ||+..|.+ +.|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g-----~~l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTT---NRHRGFGFVTFESEDIVEKVCE-IHFHEINN-----KMVE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSS---TTSCBEEEEECSCHHHHHHHHS-SSCCCSSS-----CCCE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CCcCcEEEEEECCHHHHHHHHH-CCCCEECC-----EEEE
Confidence 5999999999999999999999999999998866422 5677799999999999999997 99999999 7899
Q ss_pred EEee
Q 025677 231 LQFS 234 (249)
Q Consensus 231 V~~a 234 (249)
|+||
T Consensus 72 v~~A 75 (75)
T 2mss_A 72 CKKA 75 (75)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9986
No 114
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=1.3e-17 Score=132.57 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=68.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceE-EEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLIL-CFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~-aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
-.|||+||++.+|+++|+++|++||.|++|+|+.+ . | | |||+|.+.++|++|++.|||..|.+.+ +.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~----G----f~aFVef~~~~~A~~A~~~LnG~~i~g~~---~~ 93 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-N----G----IQAMVEFESVLCAQKAKAALNGADIYAGC---CT 93 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-S----S----EEEEEEESSHHHHHHHHHHHTTCCCBTTB---SE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-C----C----CEEEEEECCHHHHHHHHHHhCCCEecCCC---eE
Confidence 34689999999999999999999999999999753 1 3 6 999999999999999999999998743 47
Q ss_pred EEEEeecCCC
Q 025677 229 LRLQFSRNPG 238 (249)
Q Consensus 229 LrV~~ak~~~ 238 (249)
|+|+||+.+.
T Consensus 94 l~V~~Ak~~~ 103 (124)
T 2e5i_A 94 LKIEYARPTR 103 (124)
T ss_dssp EEEECCSCSC
T ss_pred EEEEEecCCc
Confidence 9999998763
No 115
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9e-18 Score=128.76 Aligned_cols=78 Identities=22% Similarity=0.448 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
..++|||+|||+++|+++|+++|++||.|.+|+|+.++ | ||||+|.+.++|++|++.|||..|.+ +
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-----g----~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 89 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK-----G----YSFVRFSTHESAAHAIVSVNGTTIEG-----H 89 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHcCCCEECC-----c
Confidence 35899999999999999999999999999999998762 3 99999999999999999999999999 8
Q ss_pred cEEEEeecCCCC
Q 025677 228 FLRLQFSRNPGP 239 (249)
Q Consensus 228 ~LrV~~ak~~~~ 239 (249)
.|+|+|++....
T Consensus 90 ~l~v~~a~~~~~ 101 (109)
T 1x4g_A 90 VVKCYWGKESPD 101 (109)
T ss_dssp ECEEECCCCCCS
T ss_pred EEEEEecCCCCC
Confidence 999999988643
No 116
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=8.6e-18 Score=126.27 Aligned_cols=79 Identities=27% Similarity=0.473 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
.+++|||+|||+++|+++|+++|++||.|. ++++.. +++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~-------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 84 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ-------GPRRRAFLHYPDSAAAQQAVSCLQGLRLGT-----D 84 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCCSSS-----S
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC-------CCCcEEEEEECCHHHHHHHHHHhCCCEECC-----c
Confidence 358999999999999999999999999996 666653 233599999999999999999999999999 8
Q ss_pred cEEEEeecCCCC
Q 025677 228 FLRLQFSRNPGP 239 (249)
Q Consensus 228 ~LrV~~ak~~~~ 239 (249)
.|+|+|++.+..
T Consensus 85 ~l~V~~a~~~~~ 96 (97)
T 2e5j_A 85 TLRVALARQQRD 96 (97)
T ss_dssp CCEEEECCCCCC
T ss_pred EEEEEEcCCCCC
Confidence 899999987643
No 117
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-18 Score=126.13 Aligned_cols=72 Identities=25% Similarity=0.447 Sum_probs=64.8
Q ss_pred cEEEEcCCCCCC------CHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025677 150 STLYVEGLPADS------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 223 (249)
Q Consensus 150 ~tLfVgnLp~~~------teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 223 (249)
++|||+|||+++ |+++|+++|++||.|.+|++. +.+ |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~----g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g-- 74 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EED----GKTKGYIFLEYASPAHAVDAVKNADGYKLDK-- 74 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBT----TBCCCEEEEEESSHHHHHHHHTTSSSCCCSS--
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCC----CcEeEEEEEEECCHHHHHHHHHHhcCcccCC--
Confidence 799999999999 789999999999999999987 333 6677799999999999999999999999999
Q ss_pred CCCc-cEEE
Q 025677 224 PDSK-FLRL 231 (249)
Q Consensus 224 ~~~r-~LrV 231 (249)
+ +|+|
T Consensus 75 ---~~~l~V 80 (81)
T 2krb_A 75 ---QHTFRV 80 (81)
T ss_dssp ---SSCCCC
T ss_pred ---ceeEEe
Confidence 6 6766
No 118
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.1e-18 Score=130.73 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=71.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++|+++|+++|++||.|.+|+|+.+.. |+++|||||+|.+.++|++|++ +++..|.+ +.
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~----g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g-----r~ 80 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH----KAFKGSIFVVFDSIESAKKFVE-TPGQKYKE-----TD 80 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT----TSCCCEEEEEESSHHHHHHHHT-SSCCCCTT-----TT
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC----CCCccEEEEEECCHHHHHHHHH-cCCCEECC-----EE
Confidence 48999999999999999999999999999999997754 5566799999999999999998 99999999 88
Q ss_pred EEEEeecC
Q 025677 229 LRLQFSRN 236 (249)
Q Consensus 229 LrV~~ak~ 236 (249)
|+|.|++.
T Consensus 81 l~V~~~~~ 88 (103)
T 1s79_A 81 LLILFKDD 88 (103)
T ss_dssp CEEEEHHH
T ss_pred EEEEEchH
Confidence 99999864
No 119
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=3.6e-18 Score=137.02 Aligned_cols=85 Identities=26% Similarity=0.454 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEE--------EEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCce
Q 025677 147 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEV--------RLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR 218 (249)
Q Consensus 147 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v--------~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~ 218 (249)
.++++|||+|||+++|+++|+++|++||.|..+ ++.. + |+++|||||+|.+.++|++|++.|||..
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~--~----g~~~g~afV~f~~~~~A~~Ai~~lng~~ 116 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK--E----GRMKGQAFIGLPNEKAAAKALKEANGYV 116 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE--E----TTTEEEEEEECSSHHHHHHHHHHHTTBE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc--C----CCcccEEEEEeCCHHHHHHHHHHhCCCE
Confidence 346899999999999999999999999998764 2222 2 5677899999999999999999999999
Q ss_pred eCCCCCCCccEEEEeecCCCCCCC
Q 025677 219 MDEDDPDSKFLRLQFSRNPGPRSV 242 (249)
Q Consensus 219 i~g~~~~~r~LrV~~ak~~~~r~g 242 (249)
|.+ +.|+|+||+...++..
T Consensus 117 ~~g-----~~l~V~~a~~~~~~~~ 135 (143)
T 3egn_A 117 LFG-----KPMVVQFARSARPKQD 135 (143)
T ss_dssp ETT-----EECEEEECCCSCC---
T ss_pred eCC-----cEEEEEECCCCCCccC
Confidence 999 8999999988665543
No 120
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.74 E-value=1e-17 Score=126.53 Aligned_cols=75 Identities=23% Similarity=0.388 Sum_probs=69.1
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCC
Q 025677 147 DASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 225 (249)
Q Consensus 147 ~~~~tLfVgnLp~-~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~ 225 (249)
.++++|||+|||+ ++++++|+++|++||.|.+|++. +| ||||+|.+.++|++|++.|||..+.+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g----~afV~f~~~~~A~~Ai~~l~g~~~~g---- 84 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NA----FGFIQFDNPQSVRDAIEXESQEMNFG---- 84 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SS----EEEEEESSHHHHHHHHHHHTTSEETT----
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CC----EEEEEECCHHHHHHHHHHcCCCEECC----
Confidence 3479999999998 99999999999999999999883 13 99999999999999999999999998
Q ss_pred CccEEEEeecCC
Q 025677 226 SKFLRLQFSRNP 237 (249)
Q Consensus 226 ~r~LrV~~ak~~ 237 (249)
+.|+|+|++.+
T Consensus 85 -~~l~V~~a~~~ 95 (97)
T 2xnq_A 85 -KKLILEVSSSN 95 (97)
T ss_dssp -EECEEEECCCC
T ss_pred -EEEEEEecCCC
Confidence 89999999874
No 121
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=8.2e-18 Score=143.26 Aligned_cols=85 Identities=25% Similarity=0.322 Sum_probs=74.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025677 145 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 224 (249)
Q Consensus 145 p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 224 (249)
|..+++||||+|||+++||++|+++|++||.|.+|+|+.+... |+++|||||+|.+.++|++|++.||+..+.+
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g--- 84 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMIT---RRSLGYAYVNFQQPADAERALDTMNFDVIKG--- 84 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCC---CCccccccceeCCHHHHHHHHHHhhhhhcCC---
Confidence 3345689999999999999999999999999999999976532 6778899999999999999999999999999
Q ss_pred CCccEEEEeecCC
Q 025677 225 DSKFLRLQFSRNP 237 (249)
Q Consensus 225 ~~r~LrV~~ak~~ 237 (249)
+.|++.++...
T Consensus 85 --~~i~~~~~~~~ 95 (213)
T 4f02_A 85 --KPVRIMWSQRD 95 (213)
T ss_dssp --EECEEEECCCC
T ss_pred --ccccccccccc
Confidence 88999998754
No 122
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=6.7e-18 Score=126.78 Aligned_cols=75 Identities=23% Similarity=0.398 Sum_probs=69.0
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 148 ASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 148 ~~~tLfVgnLp~-~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
++++|||+|||+ ++|+++|+++|++||.|.+|++. +| ||||+|.+.++|++|++.|||..+.+
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g----~afV~f~~~~~A~~A~~~l~g~~~~g----- 72 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NA----FGFIQFDNPQSVRDAIECESQEMNFG----- 72 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TT----EEEEEESCHHHHHHHHHHHTCSSCBT-----
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CC----EEEEEECCHHHHHHHHHHcCCCeeCC-----
Confidence 368999999999 99999999999999999999984 13 99999999999999999999999998
Q ss_pred ccEEEEeecCCC
Q 025677 227 KFLRLQFSRNPG 238 (249)
Q Consensus 227 r~LrV~~ak~~~ 238 (249)
+.|+|+|++...
T Consensus 73 ~~l~V~~a~~~~ 84 (96)
T 2kvi_A 73 KKLILEVSSSNA 84 (96)
T ss_dssp TTBCEEEEECCC
T ss_pred cEEEEEEcCcCC
Confidence 889999998753
No 123
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.7e-18 Score=131.30 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=72.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCe-EEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGY-KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i-~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
+.++|||+|||+++|+++|+++|++||.| .+|+|+.+++ |+++|||||+|.+.++|++|++. |+..|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~----g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g----- 83 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNN----GQGLGQALVQFKNEDDARKSERL-HRKKLNG----- 83 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTT----SSCSSCEEEECSSHHHHHHHGGG-CSEEETT-----
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCC----CCcceEEEEEECCHHHHHHHHHh-CCCccCC-----
Confidence 46899999999999999999999999999 8899987764 56667999999999999999987 9999999
Q ss_pred ccEEEEeecCC
Q 025677 227 KFLRLQFSRNP 237 (249)
Q Consensus 227 r~LrV~~ak~~ 237 (249)
+.|+|.|++..
T Consensus 84 r~i~v~~a~~~ 94 (114)
T 2cpy_A 84 REAFVHVVTLE 94 (114)
T ss_dssp EEEEEEEECHH
T ss_pred eEEEEEECCHH
Confidence 89999999753
No 124
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=1.2e-17 Score=128.81 Aligned_cols=77 Identities=32% Similarity=0.633 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++++|||+|||+++|+++|+++|++||.|.+|+++ +| ||||+|.+.++|++|++.|||..|.+ +
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg----~afV~f~~~~~A~~Ai~~l~g~~~~g-----~ 93 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NG----FAFVEFEEAESAAKAIEEVHGKSFAN-----Q 93 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TT----EEEEECSSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CC----EEEEEECCHHHHHHHHHHcCCCEECC-----e
Confidence 46899999999999999999999999999999988 14 99999999999999999999999998 8
Q ss_pred cEEEEeecCCCCC
Q 025677 228 FLRLQFSRNPGPR 240 (249)
Q Consensus 228 ~LrV~~ak~~~~r 240 (249)
.|+|+|++.+..+
T Consensus 94 ~l~V~~a~~~~~r 106 (108)
T 2jvo_A 94 PLEVVYSKLPAKR 106 (108)
T ss_dssp ECEEESCSCCC--
T ss_pred EEEEEEecCCCCC
Confidence 9999999886544
No 125
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-18 Score=123.48 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=68.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 229 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 229 (249)
++|||+|||+++++++|+++|++||.|.+|+++.+... |+++|||||+|.+.++|++|++.++ ..+.+ +.|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g-----~~l 71 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT---KRSRGFGFVTFMDQAGVDKVLAQSR-HELDS-----KTI 71 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCS---SSCSSEEEECCCCTTHHHHHHHTTT-CCCSS-----CCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCC---CCcCceEEEEEcCHHHHHHHHHhCC-CccCC-----EEE
Confidence 47999999999999999999999999999999876422 5667799999999999999999999 88888 789
Q ss_pred EEEee
Q 025677 230 RLQFS 234 (249)
Q Consensus 230 rV~~a 234 (249)
+|+||
T Consensus 72 ~v~~a 76 (77)
T 1uaw_A 72 DPKVA 76 (77)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99987
No 126
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.1e-17 Score=122.01 Aligned_cols=78 Identities=26% Similarity=0.372 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|| ++|+++|+++|++||.|.+|+|.. ++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~---------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-----~ 77 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP---------PRNCAFVTYEKMESADQAVAELNGTQVES-----V 77 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHTTTEEETT-----E
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC---------CCCEEEEEECCHHHHHHHHHHhCCCeECC-----e
Confidence 4689999996 899999999999999999999842 22499999999999999999999999998 8
Q ss_pred cEEEEeecCCCCCC
Q 025677 228 FLRLQFSRNPGPRS 241 (249)
Q Consensus 228 ~LrV~~ak~~~~r~ 241 (249)
.|+|+|++.+..+.
T Consensus 78 ~l~v~~a~~~~~~~ 91 (97)
T 1x5p_A 78 QLKVNIARKQPMLD 91 (97)
T ss_dssp EEEEECCSSCCCCC
T ss_pred EEEEEECCCCCCCC
Confidence 99999998875544
No 127
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=9e-19 Score=129.45 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=70.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 229 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 229 (249)
++|||+|||+++++++|+++|++||.|.+|+++.+... |+++|||||+|.+.+ |++|++.|||..+.+ +.|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g-----~~l 72 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRET---KKPKGFGFVEMQEES-VSEAIAKLDNTDFMG-----RTI 72 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSS---CCCCEEEEEEECTTH-HHHHHHTSCSSCCSS-----SSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCC---CCcceEEEEEECCHH-HHHHHHHhCCCEECC-----eEE
Confidence 58999999999999999999999999999999866432 667789999999999 999999999999999 889
Q ss_pred EEEeecCCC
Q 025677 230 RLQFSRNPG 238 (249)
Q Consensus 230 rV~~ak~~~ 238 (249)
+|+||..+.
T Consensus 73 ~V~~a~~~~ 81 (90)
T 2ki2_A 73 RVTEANPKK 81 (90)
T ss_dssp SEEEC----
T ss_pred EEEEcCCCC
Confidence 999998753
No 128
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.73 E-value=5.3e-18 Score=147.45 Aligned_cols=80 Identities=11% Similarity=0.147 Sum_probs=72.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCC--CeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 225 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG--~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~ 225 (249)
..++|||+|||+++|+++|+++|++|| .|++|+|+.++.. |++||||||+|.+.++|++||+.||+..|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~t---g~skGfaFV~f~~~~~a~~Ai~~lng~~~~G---- 139 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN---GQSKGFALVGVGSEASSKKLMDLLPKRELHG---- 139 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTT---CCEEEEEEEEESCTTHHHHHHTTSTTSCBTT----
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHcCCCeECC----
Confidence 357899999999999999999999999 9999999987532 7888999999999999999999999999999
Q ss_pred CccEEEEeec
Q 025677 226 SKFLRLQFSR 235 (249)
Q Consensus 226 ~r~LrV~~ak 235 (249)
+.|+|+|++
T Consensus 140 -r~l~V~~a~ 148 (229)
T 3q2s_C 140 -QNPVVTPVN 148 (229)
T ss_dssp -BCCEEEECC
T ss_pred -EEeEEEECC
Confidence 889999985
No 129
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=7.7e-18 Score=127.12 Aligned_cols=74 Identities=19% Similarity=0.377 Sum_probs=68.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+++|||+|||+++++++|+++|++||.|.+|++... +|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~---------~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~~ 92 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE---------KGCCFIKYDTHEQAAVCIVALANFPFQG-----RN 92 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT---------TTEEEEECSSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC---------CCEEEEEECCHHHHHHHHHHhCCCeECC-----eE
Confidence 589999999999999999999999999999998732 2399999999999999999999999999 89
Q ss_pred EEEEeecC
Q 025677 229 LRLQFSRN 236 (249)
Q Consensus 229 LrV~~ak~ 236 (249)
|+|+|++.
T Consensus 93 l~V~~a~~ 100 (101)
T 2la4_A 93 LRTGWGKE 100 (101)
T ss_dssp CCCCBCCC
T ss_pred EEEEeccC
Confidence 99999986
No 130
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=5e-18 Score=132.37 Aligned_cols=79 Identities=11% Similarity=0.129 Sum_probs=69.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCC-CeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG-~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
...+|||+|||+++|+++|+++|++|| .|..+++..++ ++|||||+|.+.++|++|++.|||..|.+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~-------~rGfaFV~F~~~e~A~~Ai~~lng~~l~G----- 94 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD-------FDGTGALEFPSEEILVEALERLNNIEFRG----- 94 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS-------SSCCEEEEESSHHHHHHHHHHTTTEEETT-----
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC-------CCCEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 358999999999999999999999999 89998885432 34599999999999999999999999999
Q ss_pred ccEEEEeecCCC
Q 025677 227 KFLRLQFSRNPG 238 (249)
Q Consensus 227 r~LrV~~ak~~~ 238 (249)
+.|+|++++.+.
T Consensus 95 r~i~V~~a~~~p 106 (111)
T 2jvr_A 95 SVITVERDDNPP 106 (111)
T ss_dssp EEEEEEESCC--
T ss_pred eEEEEEECCCCC
Confidence 899999998653
No 131
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-18 Score=131.18 Aligned_cols=83 Identities=17% Similarity=0.279 Sum_probs=71.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEee-CCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI-KESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~-~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
+.++|||+|||+++|+++|+++|++||.|.. +++. ..+ |+++|||||+|.+.++|++|++ |||..|.+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~----g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g----- 84 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRT----GTNRKFGYVDFESAEDLEKALE-LTGLKVFG----- 84 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEE----ETTTTEEEEEESSHHHHHHHHH-GGGCCBTT-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCC----CCcCcEEEEEECCHHHHHHHHh-cCCcEECC-----
Confidence 4689999999999999999999999999877 3433 333 4566699999999999999998 99999998
Q ss_pred ccEEEEeecCCCCCC
Q 025677 227 KFLRLQFSRNPGPRS 241 (249)
Q Consensus 227 r~LrV~~ak~~~~r~ 241 (249)
+.|+|+|++.+..++
T Consensus 85 ~~l~V~~a~~~~~~~ 99 (101)
T 1fj7_A 85 NEIKLEKPKGRDGTR 99 (101)
T ss_dssp BCCEEECCSCCCCSS
T ss_pred cEEEEEEcCCCCCCC
Confidence 889999998865554
No 132
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=129.43 Aligned_cols=76 Identities=13% Similarity=0.231 Sum_probs=67.6
Q ss_pred CCcEEEEcCCCCC-CCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcC--ceeCCCCC
Q 025677 148 ASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG--YRMDEDDP 224 (249)
Q Consensus 148 ~~~tLfVgnLp~~-~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG--~~i~g~~~ 224 (249)
++++|||+|||++ +|+++|+++|++||.|.+|+|+..+ | ||||+|++.++|++|++.||+ ..|.+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~l~G--- 91 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMK-----S----QAFIEMETREDAMAMVDHCLKKALWFQG--- 91 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTT-----T----EEEEECSSHHHHHHHHHHHHHSCCCSSS---
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCC-----C----EEEEEECCHHHHHHHHHHhccCCceECC---
Confidence 4689999999998 9999999999999999999997432 3 999999999999999999865 45888
Q ss_pred CCccEEEEeecCC
Q 025677 225 DSKFLRLQFSRNP 237 (249)
Q Consensus 225 ~~r~LrV~~ak~~ 237 (249)
++|+|+||+..
T Consensus 92 --r~l~V~~a~~~ 102 (112)
T 1x4f_A 92 --RCVKVDLSEKY 102 (112)
T ss_dssp --SCCEEEEECSC
T ss_pred --EEEEEEECccc
Confidence 88999999865
No 133
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=8.5e-18 Score=135.52 Aligned_cols=78 Identities=15% Similarity=0.208 Sum_probs=71.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCC---eEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVG---YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 225 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~---i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~ 225 (249)
.++|||+|||+++|+++|+++|++||. |.+|+|+.++. |+++|||||+|.+.++|++|++ ||+..|.+
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~----g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g---- 114 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE----GRQSGEAFVELGSEDDVKMALK-KDRESMGH---- 114 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS----SCEEEEEEEECSSHHHHHHHHT-TTEEESSS----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC----CCCCeEEEEEECCHHHHHHHHh-cCCCEECC----
Confidence 589999999999999999999999999 88999987754 6778899999999999999999 99999999
Q ss_pred CccEEEEeecC
Q 025677 226 SKFLRLQFSRN 236 (249)
Q Consensus 226 ~r~LrV~~ak~ 236 (249)
+.|+|.+++.
T Consensus 115 -r~i~V~~a~~ 124 (136)
T 2hgl_A 115 -RYIEVFKSHR 124 (136)
T ss_dssp -SEEEEEECCH
T ss_pred -EEEEEEECCh
Confidence 8999999864
No 134
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=5.9e-17 Score=135.62 Aligned_cols=82 Identities=22% Similarity=0.319 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 147 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 147 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
.++++|||+|||+++++++|+++|++||.|++|+|+.+.+ |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~----g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G----- 156 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRS----GRSLGTADVHFERRADALKAMKQYKGVPLDG----- 156 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTT----SSCSCCEEEEESCHHHHHHHHHHSTTCBCSS-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCEeeEEEEEeCCHHHHHHHHHHhCCCEECC-----
Confidence 4468999999999999999999999999999999987764 5566799999999999999999999999999
Q ss_pred ccEEEEeecCC
Q 025677 227 KFLRLQFSRNP 237 (249)
Q Consensus 227 r~LrV~~ak~~ 237 (249)
+.|+|+||...
T Consensus 157 r~l~V~~a~~~ 167 (177)
T 2f3j_A 157 RPMDIQLVASQ 167 (177)
T ss_dssp SBCEEEEESSG
T ss_pred EEEEEEEecCC
Confidence 88999999764
No 135
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=1.8e-17 Score=122.56 Aligned_cols=74 Identities=26% Similarity=0.323 Sum_probs=67.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++.|||..+.+ +.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-----~~ 69 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG-----KD 69 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---------GGGTEEEECCSCHHHHHHHHHHHTTEEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---------CCCcEEEEEECCHHHHHHHHHHhCCCeECC-----cE
Confidence 5799999999999999999999999 99999884 223499999999999999999999999999 89
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|+|+|++..
T Consensus 70 l~V~~a~~~ 78 (88)
T 1wg1_A 70 LIVQLQPTD 78 (88)
T ss_dssp EEEEECCCC
T ss_pred EEEEEcCCC
Confidence 999999765
No 136
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=1.6e-17 Score=124.77 Aligned_cols=73 Identities=12% Similarity=0.066 Sum_probs=68.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+..|||+||++.+||++|+++|.+||+|++++++.. +|||||+|.++++|++|++.||+.++.+ ++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~---------kGfaFVey~~~~eA~~Ai~~Ln~~~l~g-----r~ 72 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN---------QGIALCKYTTREEANKAQMALNNCVLAN-----TT 72 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHTTEEETT-----EE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC---------CcEEEEEECCHHHHHHHHHHhcCCEECC-----cE
Confidence 578999999999999999999999999999998752 2499999999999999999999999999 99
Q ss_pred EEEEeec
Q 025677 229 LRLQFSR 235 (249)
Q Consensus 229 LrV~~ak 235 (249)
|+|++|.
T Consensus 73 I~V~~A~ 79 (89)
T 2wbr_A 73 IFAESPS 79 (89)
T ss_dssp EEEECCC
T ss_pred EEEEECC
Confidence 9999984
No 137
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=128.12 Aligned_cols=75 Identities=23% Similarity=0.264 Sum_probs=68.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++|+++|+++|++||.|.+|+|+.. ++||||+|.+.++|++|++.|||..|.+ +.
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~---------~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~~ 75 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG---------GITAIVEFLEPLEARKAFRHLAYSKFHH-----VP 75 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS---------SSCEEEEESCHHHHHHHHHHHTTCBSSS-----SB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---------CCEEEEEeCCHHHHHHHHHHhCCCEECC-----eE
Confidence 479999999999999999999999999999988742 2399999999999999999999999998 88
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|+|+|++..
T Consensus 76 l~V~~a~~~ 84 (111)
T 1whx_A 76 LYLEWAPIG 84 (111)
T ss_dssp CEEEEEETT
T ss_pred EEEEECCCC
Confidence 999999864
No 138
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1e-16 Score=128.72 Aligned_cols=81 Identities=20% Similarity=0.369 Sum_probs=74.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+++++.+... |+++|||||+|.+.++|++|++.|||..+.+ +
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 157 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQT---GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG-----R 157 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTT---CCEEEEEEEEESCHHHHHHHHHHHTTCEETT-----E
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCCccCC-----c
Confidence 3589999999999999999999999999999999876432 6778899999999999999999999999998 8
Q ss_pred cEEEEeecC
Q 025677 228 FLRLQFSRN 236 (249)
Q Consensus 228 ~LrV~~ak~ 236 (249)
.|+|+||+.
T Consensus 158 ~i~v~~a~~ 166 (166)
T 3md3_A 158 PLRINWAAK 166 (166)
T ss_dssp ECEEEESCC
T ss_pred EEEEEecCC
Confidence 999999863
No 139
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=6.8e-17 Score=129.87 Aligned_cols=82 Identities=26% Similarity=0.466 Sum_probs=74.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+++|||+|||+++|+++|+++|++||.|.+|+++.+... |+++|||||+|.+.++|++|++.|||..+.+ +.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-----~~ 73 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKIT---GQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-----KT 73 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC---CcceeEEEEEECCHHHHHHHHHHcCCCccCC-----ce
Confidence 589999999999999999999999999999999976522 6778899999999999999999999999998 89
Q ss_pred EEEEeecCCC
Q 025677 229 LRLQFSRNPG 238 (249)
Q Consensus 229 LrV~~ak~~~ 238 (249)
|+|+|++...
T Consensus 74 l~v~~~~~~~ 83 (167)
T 1fxl_A 74 IKVSYARPSS 83 (167)
T ss_dssp CEEEECCCCC
T ss_pred EEEEecCCCc
Confidence 9999998653
No 140
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6.7e-17 Score=120.69 Aligned_cols=77 Identities=17% Similarity=0.276 Sum_probs=67.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++|+++|+++|++||.|.+| +....+ |+ ||||+|.+.++|++|++ |||..|.+ +.
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~----g~---~afV~f~~~~~a~~ai~-l~g~~~~g-----~~ 73 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDK----GV---FAIVEMGDVGAREAVLS-QSQHSLGG-----HR 73 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSS----CC---EEEEEESSHHHHHHHHT-CSCCEETT-----EE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCC----Cc---EEEEEECCHHHHHHHHh-cCCeEECC-----EE
Confidence 5799999999999999999999999999987 444333 33 99999999999999999 99999999 89
Q ss_pred EEEEeecCCCC
Q 025677 229 LRLQFSRNPGP 239 (249)
Q Consensus 229 LrV~~ak~~~~ 239 (249)
|+|+++.....
T Consensus 74 l~V~~a~~~~~ 84 (94)
T 2e5g_A 74 LRVRPREQKEF 84 (94)
T ss_dssp CCCBCSCCSCC
T ss_pred EEEEECCcCCC
Confidence 99999976543
No 141
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.70 E-value=3.2e-17 Score=127.48 Aligned_cols=79 Identities=14% Similarity=0.246 Sum_probs=66.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++|+++|+++|++||.|.+|+|+.+ | ||||+|.+.++|++||+.|||..|++.......
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g----~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------G----TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------S----EEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------C----EEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 589999999999999999999999999999998765 3 999999999999999999999999993322223
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|+|..++..
T Consensus 86 i~v~~~~~~ 94 (115)
T 3beg_B 86 IRVKVDGPR 94 (115)
T ss_dssp CEEEECC--
T ss_pred EEeccCCCC
Confidence 788887654
No 142
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=5.3e-17 Score=130.21 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=69.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceE-EEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLIL-CFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~-aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
-.|||+||++.+|+++|+++|++||.|.+|+++.+. ++| |||+|.+.++|++|++.|||..|.+.+ +.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~--------~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~---~~ 97 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--------NQFQALLQYADPVSAQHAKLSLDGQNIYNAC---CT 97 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET--------TEEEEEEEESCHHHHHHHHHHHTTCEEETTE---EE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC--------CCcEEEEEECCHHHHHHHHHHcCCCeecCCC---cE
Confidence 567899999999999999999999999999887643 237 999999999999999999999998854 68
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|+|+||+.+
T Consensus 98 LrI~~ak~~ 106 (130)
T 3zzy_A 98 LRIDFSKLT 106 (130)
T ss_dssp EEEEECSCS
T ss_pred EEEEecCCC
Confidence 999999876
No 143
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.70 E-value=5.3e-17 Score=131.19 Aligned_cols=78 Identities=24% Similarity=0.356 Sum_probs=71.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+++.+. +|||||+|.+.++|++|++.|||..|.+ +
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 138 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNP--------PGFAFVEFEDPRDAADAVRELDGRTLCG-----C 138 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSS--------CSEEEEEESSHHHHHHHHHHHSSSCSSS-----S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCC--------CcEEEEEECCHHHHHHHHHHcCCCEECC-----e
Confidence 46899999999999999999999999999999998651 2499999999999999999999999998 8
Q ss_pred cEEEEeecCCC
Q 025677 228 FLRLQFSRNPG 238 (249)
Q Consensus 228 ~LrV~~ak~~~ 238 (249)
+|+|+|++.+.
T Consensus 139 ~l~v~~a~~~~ 149 (150)
T 2i2y_A 139 RVRVELSNGEK 149 (150)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEcCCCC
Confidence 89999998753
No 144
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=5.8e-17 Score=130.87 Aligned_cols=82 Identities=28% Similarity=0.440 Sum_probs=74.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+++|||+|||+++|+++|+++|++||.|.+|+++.+... |+++|||||+|.+.++|++|++.|+|..+.+ +.
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-----~~ 74 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKT---GYSYGYAFVDFTSEMDSQRAIKVLNGITVRN-----KR 74 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTT---TEECSEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCC---CccceEEEEEECCHHHHHHHHHhcCCCEeCC-----cE
Confidence 589999999999999999999999999999999875422 5667799999999999999999999999998 89
Q ss_pred EEEEeecCCC
Q 025677 229 LRLQFSRNPG 238 (249)
Q Consensus 229 LrV~~ak~~~ 238 (249)
|+|+|++...
T Consensus 75 l~v~~~~~~~ 84 (168)
T 1b7f_A 75 LKVSYARPGG 84 (168)
T ss_dssp CEEEECCCCS
T ss_pred EEEEecCCCc
Confidence 9999998654
No 145
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=7e-17 Score=152.78 Aligned_cols=82 Identities=21% Similarity=0.366 Sum_probs=74.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||++||+++|.++|++||.|+.|+|+.+... |+++|||||+|.+.++|++||++|||..|.+ +
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g-----r 172 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRS---GKPRGYAFIEYEHERDMHSAYKHADGKKIDG-----R 172 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCC---CCccceEEEeeccHHHHHHHHHHcCCCEECC-----E
Confidence 4689999999999999999999999999999999876422 6677899999999999999999999999999 8
Q ss_pred cEEEEeecCC
Q 025677 228 FLRLQFSRNP 237 (249)
Q Consensus 228 ~LrV~~ak~~ 237 (249)
.|+|+|++..
T Consensus 173 ~i~V~~a~~~ 182 (437)
T 3pgw_S 173 RVLVDVERGR 182 (437)
T ss_pred EEEEEEeCCC
Confidence 8999999864
No 146
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=4e-17 Score=135.69 Aligned_cols=79 Identities=22% Similarity=0.249 Sum_probs=70.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
..+|||+||++++|+++|+++|++||.|++|+|..++ +++||||+|.+.++|++|++.|||..|.+.. +.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~-------~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g---~~ 115 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-------NQFQALLQYADPVSAQHAKLSLDGQNIYNAC---CT 115 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS-------SCEEEEEEESCHHHHHHHHHHSTTBCSSSSC---SC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC-------CCCEEEEEECCHHHHHHHHHHhCCCEecCCC---cE
Confidence 4679999999999999999999999999999987553 1359999999999999999999999997633 67
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|+|+|++.+
T Consensus 116 L~V~~Ak~~ 124 (164)
T 1sjr_A 116 LRIDFSKLT 124 (164)
T ss_dssp EEEEECSSS
T ss_pred EEEEEecCC
Confidence 999999875
No 147
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=6.5e-17 Score=120.73 Aligned_cols=78 Identities=12% Similarity=0.240 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEE-EeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVR-LVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~-l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
.+++|||+|||+++|+++|+++|++||.|.+|+ ++.+... | .|||+|.+.++|++|++.|||..|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~---~----~afV~f~~~~~a~~Ai~~l~g~~~~g----- 81 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET---A----VVNVTYSSKDQARQALDKLNGFQLEN----- 81 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS---E----EEEEEESSHHHHHHHHHHHTTCBCSS-----
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC---C----EEEEEECCHHHHHHHHHHhCCCEECC-----
Confidence 358999999999999999999999999999995 6655322 2 59999999999999999999999998
Q ss_pred ccEEEEeecCC
Q 025677 227 KFLRLQFSRNP 237 (249)
Q Consensus 227 r~LrV~~ak~~ 237 (249)
+.|+|+|++..
T Consensus 82 ~~l~V~~a~~~ 92 (96)
T 2e44_A 82 FTLKVAYIPDE 92 (96)
T ss_dssp CBCEEEECCCC
T ss_pred cEEEEEEcCcc
Confidence 88999999875
No 148
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=8.2e-18 Score=120.02 Aligned_cols=75 Identities=13% Similarity=0.314 Sum_probs=66.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEE
Q 025677 151 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 230 (249)
Q Consensus 151 tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~Lr 230 (249)
||||+|||+++|+++|+++|++||.|.+|+++.+... |+++|||||+|.+.++|++|++. ++..+.+ +.|+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g-----~~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKT---NKRRGFCFITFKEEEPVKKIMEK-KYHNVGL-----SKCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCC---SSSCCCEEEECSSSHHHHHHHTT-SSCCBTT-----BCCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CCcCCEEEEEECCHHHHHHHHHh-CCCeECC-----EEEE
Confidence 6999999999999999999999999999998865432 56667999999999999999984 8999999 7899
Q ss_pred EEee
Q 025677 231 LQFS 234 (249)
Q Consensus 231 V~~a 234 (249)
|++|
T Consensus 72 v~~a 75 (75)
T 1iqt_A 72 IKVA 75 (75)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9875
No 149
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.69 E-value=1.3e-16 Score=132.22 Aligned_cols=86 Identities=21% Similarity=0.349 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 147 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 147 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
.+.++|||+|||+++|+++|+++|++||.|.+|++..+... |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----- 183 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT---GLSKGYAFCEYVDINVTDQAIAGLNGMQLGD----- 183 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTT---CSEEEEEEEEESSSSHHHHHHHHHTTCEETT-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCC---CCcceEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 34689999999999999999999999999999999876422 6778899999999999999999999999998
Q ss_pred ccEEEEeecCCCCC
Q 025677 227 KFLRLQFSRNPGPR 240 (249)
Q Consensus 227 r~LrV~~ak~~~~r 240 (249)
+.|+|+|++.+..+
T Consensus 184 ~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 184 KKLLVQRASVGAKN 197 (198)
T ss_dssp EECEEEESCCCCCC
T ss_pred EEEEEEECCCCCCC
Confidence 89999999886543
No 150
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.69 E-value=1.5e-16 Score=133.61 Aligned_cols=82 Identities=18% Similarity=0.385 Sum_probs=75.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++|+++|+++|++||.|.+|+++.+... |+++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g-----~~ 196 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTT---GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGG-----QY 196 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCBCSS-----SB
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCC---CCcCceEEEEecCHHHHHHHHHHccCCEeCC-----cE
Confidence 589999999999999999999999999999999976432 6778899999999999999999999999998 88
Q ss_pred EEEEeecCCC
Q 025677 229 LRLQFSRNPG 238 (249)
Q Consensus 229 LrV~~ak~~~ 238 (249)
|+|+|++.+.
T Consensus 197 i~V~~a~~~~ 206 (216)
T 2qfj_A 197 LRVGKAVTPP 206 (216)
T ss_dssp CEEEECSSCS
T ss_pred EEEEEecCCC
Confidence 9999998863
No 151
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=2.4e-17 Score=126.38 Aligned_cols=79 Identities=15% Similarity=0.224 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCC---eEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVG---YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 224 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~---i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 224 (249)
...+|||+|||+++|+++|+++|++||. |.+|+|+.++. |+++|||||+|.+.++|++|++ ||+..|.+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~----g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g--- 81 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD----GKRRGDALIEMESEQDVQKALE-KHRMYMGQ--- 81 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT----STTCSEEEEEBSSHHHHHHHHT-TTTCCSSS---
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC----CCEeeEEEEEECCHHHHHHHHH-hCcceeCC---
Confidence 4689999999999999999999999988 88999987654 5566799999999999999999 99999988
Q ss_pred CCccEEEEeecC
Q 025677 225 DSKFLRLQFSRN 236 (249)
Q Consensus 225 ~~r~LrV~~ak~ 236 (249)
+.|+|.+++.
T Consensus 82 --r~i~V~~a~~ 91 (107)
T 2lmi_A 82 --RYVEVYEINN 91 (107)
T ss_dssp --SCCCCEECCH
T ss_pred --eEEEEEECCH
Confidence 8899999864
No 152
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.68 E-value=1.7e-16 Score=128.73 Aligned_cols=79 Identities=22% Similarity=0.370 Sum_probs=72.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++|+++|+++|++||.|.+++++.+... |+++|||||+|.+.++|++|++.|||..+.+ +.
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~ 165 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT---GLSKGYAFCEYVDINVTDQAIAGLNGMQLGD-----KK 165 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTT---CSEEEEEEEEESSTTHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHcCCCEECC-----eE
Confidence 589999999999999999999999999999999877422 6778899999999999999999999999999 89
Q ss_pred EEEEeec
Q 025677 229 LRLQFSR 235 (249)
Q Consensus 229 LrV~~ak 235 (249)
|+|+||.
T Consensus 166 l~V~~As 172 (172)
T 2g4b_A 166 LLVQRAS 172 (172)
T ss_dssp CEEEECC
T ss_pred EEEEeCC
Confidence 9999973
No 153
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=9.3e-17 Score=124.65 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=69.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
..+|||+|||+++|+++|+++|++| .|.+|+|+.++. |+++|||||+|.++++|++|+ .||+..|.+ +.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~----g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g-----r~ 84 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV----GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ-----RY 84 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT----CCCCSEEEEECSSHHHHHHHH-HTTTEEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC----CCCCeEEEEEECCHHHHHHHH-hcCCCeECC-----eE
Confidence 4799999999999999999999999 899999987754 556679999999999999999 799999999 89
Q ss_pred EEEEeecC
Q 025677 229 LRLQFSRN 236 (249)
Q Consensus 229 LrV~~ak~ 236 (249)
|+|..++.
T Consensus 85 i~V~~a~~ 92 (109)
T 2dnn_A 85 VEVSPATE 92 (109)
T ss_dssp EEEEECCH
T ss_pred EEEEECCc
Confidence 99988754
No 154
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=2.8e-17 Score=124.26 Aligned_cols=78 Identities=21% Similarity=0.307 Sum_probs=71.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+++|||+|||+++|+++|+++|++||.|.+|+|+.+.+ |+++|||||+|.+.++|++|++ ++..+.+ +.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g-----~~ 77 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRT----GVSKGYGFVSFYNDVDVQKIVE--SQINFHG-----KK 77 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSCCCHHHHTT--CCCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCC----CCccceEEEEECCHHHHHHHHh--CCCeECC-----EE
Confidence 58999999999999999999999999999999998763 6778899999999999999998 9999999 88
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|+|.++...
T Consensus 78 l~v~~a~~~ 86 (102)
T 2xs2_A 78 LKLGPAIRK 86 (102)
T ss_dssp CEEEEEEEC
T ss_pred EEEEECCcC
Confidence 999999754
No 155
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=1.5e-17 Score=134.63 Aligned_cols=80 Identities=20% Similarity=0.340 Sum_probs=71.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++||++|+++|++|| |++|+|+.++. |+++|||||+|.+.++|++|| .+|+..|.+ +.
T Consensus 46 ~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~----g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g-----R~ 114 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD----GRVTGEADVEFATHEEAVAAM-SKDRANMQH-----RY 114 (139)
T ss_dssp CCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS----SCSSCCCEEECSHHHHHHHHT-TCCSCSSSS-----CC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC----CCCceEEEEEeCCHHHHHHHH-hhCCCEECC-----EE
Confidence 58999999999999999999999999 77999887754 566779999999999999999 789999998 88
Q ss_pred EEEEeecCCCC
Q 025677 229 LRLQFSRNPGP 239 (249)
Q Consensus 229 LrV~~ak~~~~ 239 (249)
|+|.+++.+..
T Consensus 115 i~V~~a~~~~~ 125 (139)
T 2hgn_A 115 IELFLNSTTGA 125 (139)
T ss_dssp CCCEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999987643
No 156
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.7e-17 Score=126.49 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=67.5
Q ss_pred CCcEEEE--cCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCcee-CCCCC
Q 025677 148 ASSTLYV--EGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM-DEDDP 224 (249)
Q Consensus 148 ~~~tLfV--gnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i-~g~~~ 224 (249)
++++||| +||++++|+++|+++|++||.|.+|.|+.. +|||||+|.+.++|++|++.|||..+ ... .
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~---------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~l-g 93 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---------KPYSFARYRTTEESKRAYVTLNGKEVVDDL-G 93 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT---------CSCEEEEESSHHHHHHHHHHTTTCEEECTT-S
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---------CCEEEEEECCHHHHHHHHHHhCCCEEcccc-C
Confidence 3689999 779999999999999999999999887643 24999999999999999999999988 211 0
Q ss_pred CCccEEEEeecCC
Q 025677 225 DSKFLRLQFSRNP 237 (249)
Q Consensus 225 ~~r~LrV~~ak~~ 237 (249)
.+++|.|.|++..
T Consensus 94 ~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 94 QKITLYLNFVEKV 106 (114)
T ss_dssp CEEECEEEEESCC
T ss_pred CCcEEEEEecccC
Confidence 1278999999864
No 157
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.68 E-value=1.6e-16 Score=131.47 Aligned_cols=82 Identities=10% Similarity=0.235 Sum_probs=71.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++|+++|+++|++||.|..|+++.+... |+++|||||+|.+.++|++|++. ++..|.+ +.
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G-----~~ 174 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS---GKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNG-----HN 174 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHC-SCCEETT-----EE
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCC---CCccceEEEEECCHHHHHHHHHh-CCcEECC-----EE
Confidence 589999999999999999999999999999999976532 67788999999999999999976 8999999 88
Q ss_pred EEEEeecCCCC
Q 025677 229 LRLQFSRNPGP 239 (249)
Q Consensus 229 LrV~~ak~~~~ 239 (249)
|+|+|+..+..
T Consensus 175 i~v~~a~~k~~ 185 (196)
T 1l3k_A 175 CEVRKALSKQE 185 (196)
T ss_dssp CEEEECC----
T ss_pred EEEEecCChhH
Confidence 99999987643
No 158
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.68 E-value=1.3e-16 Score=135.76 Aligned_cols=79 Identities=15% Similarity=0.293 Sum_probs=72.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++ +.++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-----~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g-----~~ 172 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-----NGSKGYGFVHFETQEAAERAIEKMNGMLLND-----RK 172 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-----TEEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-----CCCceEEEEEeCCHHHHHHHHHHhCCCEECC-----EE
Confidence 4789999999999999999999999999999999765 3457799999999999999999999999999 89
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|+|+|++.+
T Consensus 173 i~V~~a~~~ 181 (213)
T 4f02_A 173 VFVGRFKSR 181 (213)
T ss_dssp CEEEECCCH
T ss_pred EEEEEcCCC
Confidence 999999753
No 159
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.4e-16 Score=127.84 Aligned_cols=81 Identities=17% Similarity=0.343 Sum_probs=73.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 229 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 229 (249)
++|||+|||+++|+++|+++|++||.|.+|+++.++. |+++|||||+|.+.++|++|++.|||..+.+ +.|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-----~~i 71 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN----NKNVNYAFVEYHQSHDANIALQTLNGKQIEN-----NIV 71 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-----CCEEEEEEEESSHHHHHHHHHHHTTCEETT-----EEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC----CCCCCEEEEEeCCHHHHHHHHHHcCCCccCC-----Cee
Confidence 5899999999999999999999999999999997764 5567899999999999999999999999998 899
Q ss_pred EEEeecCCCC
Q 025677 230 RLQFSRNPGP 239 (249)
Q Consensus 230 rV~~ak~~~~ 239 (249)
+|+|+.....
T Consensus 72 ~v~~~~~~~~ 81 (166)
T 3md3_A 72 KINWAFQSQQ 81 (166)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCCCCC
Confidence 9999977543
No 160
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.7e-17 Score=129.03 Aligned_cols=77 Identities=23% Similarity=0.300 Sum_probs=68.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCe----EEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGY----KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 224 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i----~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 224 (249)
..+|||+|||+++|+++|+++|++||.| .+|+|+.+++ |+++|||||+|.+.++|++|++. |+..|.+
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~----gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g--- 94 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPD----GRPTGDAFVLFACEEYAQNALRK-HKDLLGK--- 94 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTT----SCEEEEEEECCSSHHHHHHHHTT-TTEESSS---
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCC----CCEeeEEEEEECCHHHHHHHHHh-CCCeeCC---
Confidence 5899999999999999999999999875 6888887654 67788999999999999999986 9998888
Q ss_pred CCccEEEEeec
Q 025677 225 DSKFLRLQFSR 235 (249)
Q Consensus 225 ~~r~LrV~~ak 235 (249)
+.|+|..+.
T Consensus 95 --R~i~V~~a~ 103 (123)
T 2dha_A 95 --RYIELFRST 103 (123)
T ss_dssp --CEECCEEEC
T ss_pred --eEEEEEECC
Confidence 889998875
No 161
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=2.6e-16 Score=127.59 Aligned_cols=81 Identities=21% Similarity=0.310 Sum_probs=72.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++|+++|+++|++||.|.+|+++.+.+ |+++|||||+|.+.++|++|++.|||..+.+.+. ++
T Consensus 95 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~--~~ 168 (175)
T 3nmr_A 95 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD----GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCS--SP 168 (175)
T ss_dssp GSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCS--SC
T ss_pred CCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC----CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCC--CC
Confidence 58999999999999999999999999999999988754 6778899999999999999999999998876421 78
Q ss_pred EEEEeec
Q 025677 229 LRLQFSR 235 (249)
Q Consensus 229 LrV~~ak 235 (249)
|+|+||.
T Consensus 169 l~V~~ad 175 (175)
T 3nmr_A 169 MVVKFAD 175 (175)
T ss_dssp CEEEECC
T ss_pred eEEEecC
Confidence 9999984
No 162
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=123.27 Aligned_cols=70 Identities=24% Similarity=0.300 Sum_probs=59.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHH---cCcee
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL---QGYRM 219 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~L---nG~~i 219 (249)
+++|||+|||+++|+++|+++|++||.|. ++++.+......|+++|||||+|.+.++|++|++.| +|..+
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 58999999999999999999999999998 777765543333677789999999999999999998 56543
No 163
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.66 E-value=2.5e-16 Score=130.32 Aligned_cols=81 Identities=12% Similarity=0.215 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+... |+++|||||+|.+.++|++|++. ++..+.+ +
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g-----~ 82 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNT---KRSRGFGFVTYATVEEVDAAMNA-RPHKVDG-----R 82 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHT-CSCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCC---CCccceEEEEeCCHHHHHHHHhc-CCCEECC-----E
Confidence 4689999999999999999999999999999999976532 67788999999999999999976 9999999 8
Q ss_pred cEEEEeecCC
Q 025677 228 FLRLQFSRNP 237 (249)
Q Consensus 228 ~LrV~~ak~~ 237 (249)
.|+|.|+...
T Consensus 83 ~l~v~~~~~~ 92 (196)
T 1l3k_A 83 VVEPKRAVSR 92 (196)
T ss_dssp ECEEEECCC-
T ss_pred EeeeecccCc
Confidence 8999999765
No 164
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.66 E-value=3.1e-16 Score=133.88 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=70.1
Q ss_pred CcEEEEcCCC-CCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 149 SSTLYVEGLP-ADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 149 ~~tLfVgnLp-~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+++|||+||| +++|+++|+++|++||.|.+|+|+.++ +| ||||+|.+.++|++|++.|||..+.+ +
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~----~g----~afV~f~~~~~A~~Ai~~lng~~~~g-----~ 70 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK----PG----AAMVEMADGYAVDRAITHLNNNFMFG-----Q 70 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS----TT----CEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC----CC----EEEEEECCHHHHHHHHHHhCCCEECC-----c
Confidence 5899999999 899999999999999999999998642 23 99999999999999999999999999 8
Q ss_pred cEEEEeecCC
Q 025677 228 FLRLQFSRNP 237 (249)
Q Consensus 228 ~LrV~~ak~~ 237 (249)
.|+|.|++.+
T Consensus 71 ~l~v~~s~~~ 80 (205)
T 3tyt_A 71 KMNVCVSKQP 80 (205)
T ss_dssp ECEEEECSCS
T ss_pred eEEEEEccCC
Confidence 9999999864
No 165
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=8.3e-16 Score=124.00 Aligned_cols=80 Identities=23% Similarity=0.369 Sum_probs=72.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||.++++++|+++|++||.|..++++.+... |+++|||||+|.+.++|++|++.|||..+.+.. ++
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~---~~ 162 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLT---GRPRGVAFVRYNKREEAQEAISALNNVIPEGGS---QP 162 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS---SC
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCC---CCcceEEEEEECCHHHHHHHHHHhcCCEecCCC---eE
Confidence 589999999999999999999999999999999876522 677889999999999999999999999998754 78
Q ss_pred EEEEee
Q 025677 229 LRLQFS 234 (249)
Q Consensus 229 LrV~~a 234 (249)
|+|+||
T Consensus 163 l~V~~A 168 (168)
T 1b7f_A 163 LSVRLA 168 (168)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999986
No 166
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.65 E-value=4.5e-16 Score=122.53 Aligned_cols=77 Identities=26% Similarity=0.383 Sum_probs=68.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 147 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 147 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
.++++|||+|| ++|+++|+++|++||.|.+|++.. ++|||||+|.+.++|++|++.|||..|.+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~---------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g----- 100 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP---------PRNCAFVTYEKMESADQAVAELNGTQVES----- 100 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET---------TTTEEEEECSSHHHHHHHHHHHTTCBCSS-----
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCCCEECC-----
Confidence 34689999996 699999999999999999999862 22499999999999999999999999998
Q ss_pred ccEEEEeecCCCC
Q 025677 227 KFLRLQFSRNPGP 239 (249)
Q Consensus 227 r~LrV~~ak~~~~ 239 (249)
+.|+|+|++.+..
T Consensus 101 ~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 101 VQLKVNIARKQPM 113 (121)
T ss_dssp CBCEEEECCSSCC
T ss_pred eEEEEEEeCCCCC
Confidence 8899999987643
No 167
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=2.6e-16 Score=125.35 Aligned_cols=77 Identities=22% Similarity=0.353 Sum_probs=67.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeE--EEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYK--EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~--~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
.++|||+|||+++|+++|+++|++| .|. +|+|+.++. |+++|||||+|.++++|++|++. ++..|.+
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~----GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~g----- 110 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE----GKITGEAFVQFASQELAEKALGK-HKERIGH----- 110 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS----SSSCSEEEEEESSTTHHHHHHTT-TTCCBTT-----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC----CCCceEEEEEECCHHHHHHHHHH-CCCEECC-----
Confidence 5899999999999999999999999 787 888887654 56667999999999999999984 7788888
Q ss_pred ccEEEEeecC
Q 025677 227 KFLRLQFSRN 236 (249)
Q Consensus 227 r~LrV~~ak~ 236 (249)
+.|+|.++..
T Consensus 111 R~I~V~~a~~ 120 (126)
T 2hgm_A 111 RYIEVFKSSQ 120 (126)
T ss_dssp BCCCCEEECH
T ss_pred EEEEEEECCH
Confidence 8899988753
No 168
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2e-16 Score=116.52 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=62.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCcee--CCCCCCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM--DEDDPDS 226 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i--~g~~~~~ 226 (249)
+++|||+|||+++|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|++| ++..+ .+
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~~----~~~~~~~~g----- 67 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--------FRAFAFVTFADDQIAQSL----CGEDLIIKG----- 67 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--------CCSCCEEECSCHHHHHHT----TTCEEEETT-----
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--------CCCEEEEEECCHHHHHHH----hcCCceeCC-----
Confidence 589999999999999999999999999999998754 234999999999999754 55444 55
Q ss_pred ccEEEEeecCCCCC
Q 025677 227 KFLRLQFSRNPGPR 240 (249)
Q Consensus 227 r~LrV~~ak~~~~r 240 (249)
+.|+|+|++.+..+
T Consensus 68 ~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 68 ISVHISNAEPKHNS 81 (88)
T ss_dssp EEEEEECCCCCCCC
T ss_pred EEEEEEecCCCCCC
Confidence 78999999876444
No 169
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=5.9e-16 Score=115.25 Aligned_cols=76 Identities=17% Similarity=0.185 Sum_probs=61.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+..+|||+|||+++|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|+ +|++..+.... +
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--------srGfaFV~F~~~~~A~----~~~~~~~~~~g---~ 74 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--------FRAFAFVTFADDKVAQ----SLCGEDLIIKG---I 74 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--------CCSEEEEEESCHHHHH----HHTTCEEEETT---E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--------CCCEEEEEECCHHHHH----HHcCCCcccCC---E
Confidence 3589999999999999999999999999999998864 2349999999999987 36777665311 7
Q ss_pred cEEEEeecCCC
Q 025677 228 FLRLQFSRNPG 238 (249)
Q Consensus 228 ~LrV~~ak~~~ 238 (249)
.|+|.+++++.
T Consensus 75 ~v~v~~a~~k~ 85 (89)
T 3d2w_A 75 SVHISNAEPKH 85 (89)
T ss_dssp EEEEEECC---
T ss_pred EEEEEEcCCCC
Confidence 89999988654
No 170
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=7.8e-16 Score=124.74 Aligned_cols=87 Identities=15% Similarity=0.258 Sum_probs=74.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+++|||+|||+++|+++|+++|++||.|.+|+++.+.... .++++|||||+|.+.++|++|++.||+..+.+... +.
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~--~~ 79 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQN-PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMH--HP 79 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSS-SCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCS--SC
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCC-CCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCc--cc
Confidence 5899999999999999999999999999999999765431 12678899999999999999999999998875432 67
Q ss_pred EEEEeecCCC
Q 025677 229 LRLQFSRNPG 238 (249)
Q Consensus 229 LrV~~ak~~~ 238 (249)
+++.+++...
T Consensus 80 ~~~~~~~~~~ 89 (175)
T 3nmr_A 80 IQMKPADSEK 89 (175)
T ss_dssp CEEEECGGGC
T ss_pred eEEccccccc
Confidence 8888887643
No 171
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.6e-16 Score=118.06 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=63.6
Q ss_pred CcE-EEEcCCCCCCCHHH----HHHHhcCC-CCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025677 149 SST-LYVEGLPADSTKRE----VAHIFRPF-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 222 (249)
Q Consensus 149 ~~t-LfVgnLp~~~teee----L~~lF~~f-G~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~ 222 (249)
+.| |||+|||+++++++ |+++|++| |.|.+| + | |||||+|.+.++|++|++.|||..+.+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------t----g---G~AfV~F~~~esA~~A~~~l~G~~l~g- 73 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------T----G---CSAILRFINQDSAERAQKRMENEDVFG- 73 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------C----T---TCEEEEESSHHHHHHHHHHHTTCCSSS-
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------e----c---CEEEEEECCHHHHHHHHHHhcCCccCC-
Confidence 466 99999999999987 55899999 599888 1 1 499999999999999999999999999
Q ss_pred CCCCccEEEEeecCC
Q 025677 223 DPDSKFLRLQFSRNP 237 (249)
Q Consensus 223 ~~~~r~LrV~~ak~~ 237 (249)
|+|+|+||+..
T Consensus 74 ----r~i~v~~A~~~ 84 (96)
T 2diu_A 74 ----NRIIVSFTPKN 84 (96)
T ss_dssp ----SCCEEESSCCS
T ss_pred ----ceEEEEecCCC
Confidence 89999999875
No 172
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.64 E-value=9e-16 Score=123.26 Aligned_cols=80 Identities=23% Similarity=0.454 Sum_probs=71.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++++++|+++|++||.|.+++++.+... |+++|||||+|.+.++|++|++.|||..+.+.. .+
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~---~~ 161 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVT---GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT---EP 161 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS---SC
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCC---CCccceEEEEeCCHHHHHHHHHHhcCCccCCCc---cc
Confidence 478999999999999999999999999999999876522 677889999999999999999999999999843 35
Q ss_pred EEEEee
Q 025677 229 LRLQFS 234 (249)
Q Consensus 229 LrV~~a 234 (249)
|+|+||
T Consensus 162 i~v~~A 167 (167)
T 1fxl_A 162 ITVKFA 167 (167)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 999986
No 173
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.64 E-value=2.8e-16 Score=126.93 Aligned_cols=80 Identities=11% Similarity=0.289 Sum_probs=72.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++|+++|+++|++||.|.+++++.+... |+++|||||+|.+.++|++|++ +++..+.+ +.
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g-----~~ 157 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDT---GQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD-----RK 157 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSS---STTSEEEEEEESSHHHHHHHHH-CSEECSSS-----SC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCC---CccceEEEEEECCHHHHHHHHh-CCCEEeCC-----eE
Confidence 579999999999999999999999999999999876422 6677899999999999999997 89999998 88
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|+|+||+++
T Consensus 158 i~V~~a~pk 166 (167)
T 2cjk_A 158 IEIKRAEPR 166 (167)
T ss_dssp EEEEECCCC
T ss_pred EEEeecCCC
Confidence 999999864
No 174
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=1.1e-15 Score=134.19 Aligned_cols=80 Identities=24% Similarity=0.381 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCCCCHHHHH----HHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 223 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~----~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 223 (249)
++++|||+|||+++|+++|+ ++|++||.|.+|++... |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 79 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRS------LKMRGQAFVIFKEVSSATNALRSMQGFPFYD-- 79 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCC------CCcceEEEEEECCHHHHHHHHHHhcCCeeCC--
Confidence 36899999999999999976 89999999999988752 5566799999999999999999999999999
Q ss_pred CCCccEEEEeecCCC
Q 025677 224 PDSKFLRLQFSRNPG 238 (249)
Q Consensus 224 ~~~r~LrV~~ak~~~ 238 (249)
+.|+|+|++...
T Consensus 80 ---~~l~v~~a~~~~ 91 (282)
T 3pgw_A 80 ---KPMRIQYAKTDS 91 (282)
T ss_pred ---cEEEEEEeccCc
Confidence 889999997653
No 175
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=6.8e-16 Score=129.62 Aligned_cols=81 Identities=19% Similarity=0.287 Sum_probs=70.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++|+++|+++|++||.|.+|+++.+... |+++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g-----~~ 99 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT---MKHKGFAFVEYEVPEAAQLALEQMNSVMLGG-----RN 99 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC----CCCSEEEEEESSHHHHHHHHHHHSSCCCC------CC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCC---CccCceEEEEeCCHHHHHHHHHHccCCeeCC-----ee
Confidence 589999999999999999999999999999999865422 5566799999999999999999999999998 78
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|+|.++...
T Consensus 100 l~v~~~~~~ 108 (216)
T 2qfj_A 100 IKVGRPSNI 108 (216)
T ss_dssp CEEECCSCC
T ss_pred EEEecCCCc
Confidence 999998764
No 176
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.62 E-value=5.5e-16 Score=113.34 Aligned_cols=71 Identities=18% Similarity=0.327 Sum_probs=64.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCC----C-------CeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPF----V-------GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG 216 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~f----G-------~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG 216 (249)
+.++|||+|||+++|+++|+++|++| | .|.++++..++ |||||+|.+.++|++|+ .|||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k---------g~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK---------NFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS---------SEEEEEESSHHHHHHHG-GGTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC---------cEEEEEcCCHHHHHHHH-hcCC
Confidence 35899999999999999999999999 8 89999887542 39999999999999999 9999
Q ss_pred ceeCCCCCCCccEEEEe
Q 025677 217 YRMDEDDPDSKFLRLQF 233 (249)
Q Consensus 217 ~~i~g~~~~~r~LrV~~ 233 (249)
..+.+ +.|+|+.
T Consensus 75 ~~~~g-----~~l~V~r 86 (87)
T 2hzc_A 75 IIFQG-----QSLKIRR 86 (87)
T ss_dssp CEETT-----EECEEEC
T ss_pred CEECC-----eEEEEeC
Confidence 99999 8899874
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=6e-15 Score=129.59 Aligned_cols=76 Identities=30% Similarity=0.629 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeC-CCCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD-EDDPDS 226 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~-g~~~~~ 226 (249)
++++|||+|||+++|+++|+++|++||.|.+|+|+.++ +|||||+|.+.++|++|++.|||..|. +
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~~g----- 272 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--------HDIAFVEFDNEVQAGAARDALQGFKITQN----- 272 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--------CcEEEEEeCCHHHHHHHHHHcCCcEeCCC-----
Confidence 46899999999999999999999999999999998654 139999999999999999999999999 6
Q ss_pred ccEEEEeecC
Q 025677 227 KFLRLQFSRN 236 (249)
Q Consensus 227 r~LrV~~ak~ 236 (249)
+.|+|+|+|.
T Consensus 273 ~~l~v~~akk 282 (282)
T 3pgw_A 273 NAMKISFAKK 282 (282)
T ss_pred CEEEEEEecC
Confidence 7899999973
No 178
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=3.5e-15 Score=126.30 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=70.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
.++|||+|||+++|+++|+++|++||.|.+|+|+.+.+ |+++|||||+|.+.++|++|++.++ ..+.+ +.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~----~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~G-----r~ 178 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH----KAFKGSIFVVFDSIESAKKFVETPG-QKYKE-----TD 178 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT----CCEEEEEEEEESSHHHHHHHHHCTT-CEETT-----EE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC----CCcccEEEEEECCHHHHHHHHHhCC-CeECC-----EE
Confidence 47999999999999999999999999999999997654 6678899999999999999997654 58998 89
Q ss_pred EEEEeecCC
Q 025677 229 LRLQFSRNP 237 (249)
Q Consensus 229 LrV~~ak~~ 237 (249)
|+|.|++.-
T Consensus 179 l~V~~~~~y 187 (193)
T 2voo_A 179 LLILFKDDY 187 (193)
T ss_dssp CEEEETTTC
T ss_pred EEEEEhHHH
Confidence 999998753
No 179
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.59 E-value=2.5e-15 Score=129.12 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 148 ASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 148 ~~~tLfVgnLp~-~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
++++|||+|||+ ++|+++|+++|++||.|.+|+|+.++ +|||||+|.+.++|++|++.|||..|.+
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--------~g~afV~F~~~~~A~~Ai~~l~g~~~~g----- 99 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--------KENALVQMADGNQAQLAMSHLNGHKLHG----- 99 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--------SCCEEEEESCHHHHHHHHHHHTTCBCSS-----
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--------CCEEEEEECCHHHHHHHHHHhCCCeECC-----
Confidence 368999999999 99999999999999999999998764 2399999999999999999999999998
Q ss_pred ccEEEEeecCC
Q 025677 227 KFLRLQFSRNP 237 (249)
Q Consensus 227 r~LrV~~ak~~ 237 (249)
+.|+|+|++..
T Consensus 100 ~~l~v~~a~~~ 110 (229)
T 2adc_A 100 KPIRITLSKHQ 110 (229)
T ss_dssp SBCEEECCSCC
T ss_pred eEEEEEEecCc
Confidence 88999999865
No 180
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.59 E-value=4.8e-15 Score=120.84 Aligned_cols=77 Identities=22% Similarity=0.378 Sum_probs=68.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+.++|||+|||+++|+++|+++|++||.|..+ ..+ |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 164 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQD----GKSKGIAYIEFKSEADAEKNLEEKQGAEIDG-----R 164 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSS----SSCCSEEEEECSSHHHHHHHHHHHTEEEETT-----E
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCC----CCCceEEEEEECCHHHHHHHHHHhCCCEECC-----e
Confidence 35899999999999999999999999987655 333 5566699999999999999999999999999 8
Q ss_pred cEEEEeecCC
Q 025677 228 FLRLQFSRNP 237 (249)
Q Consensus 228 ~LrV~~ak~~ 237 (249)
.|+|+|++.+
T Consensus 165 ~i~v~~a~~k 174 (175)
T 1fje_B 165 SVSLYYTGEK 174 (175)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEecCCC
Confidence 9999999764
No 181
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.9e-15 Score=121.08 Aligned_cols=79 Identities=9% Similarity=0.129 Sum_probs=69.6
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCC----HHH----HHHHHH--HHc
Q 025677 150 STLYVEGL----PADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFEN----PAC----AATALS--ALQ 215 (249)
Q Consensus 150 ~tLfVgnL----p~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~----~~~----A~~Al~--~Ln 215 (249)
..|||+|| |+.+++++|+++|++||+|.+|+++.++.. |.|+|||||+|.+ +++ |.+|++ .||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~T---g~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNS---ALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTT---CCEEEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 68999999 999999999999999999999999987654 8889999999996 333 788888 789
Q ss_pred CceeCCCCCCCccEEEEeecC
Q 025677 216 GYRMDEDDPDSKFLRLQFSRN 236 (249)
Q Consensus 216 G~~i~g~~~~~r~LrV~~ak~ 236 (249)
|..|++ +.|+|.+-+.
T Consensus 80 g~~I~G-----r~irV~ln~~ 95 (136)
T 2j8a_A 80 GCFIMG-----FKFEVILNKH 95 (136)
T ss_dssp CEEETT-----EEEEEEECCT
T ss_pred CCeecC-----cEEEEEECcc
Confidence 999999 8999998765
No 182
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.59 E-value=8.1e-15 Score=112.85 Aligned_cols=82 Identities=12% Similarity=0.186 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCC-----CCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025677 148 ASSTLYVEGLPA-----DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 222 (249)
Q Consensus 148 ~~~tLfVgnLp~-----~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~ 222 (249)
++++|+|.||.. +-++++|+++|++||.|.+|+|+.+... .++++|||||+|.+.++|++|++.|||..+.+
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~--~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G- 83 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGA--PDDEAVRIFLEFERVESAIKAVVDLNGRYFGG- 83 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSC--CTTTSEEEEEEESSHHHHHHHHHHHTTCEETT-
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCC--CCCCcEEEEEEECCHHHHHHHHHHHCCCEECC-
Confidence 468999999973 2378999999999999999999875421 14567799999999999999999999999999
Q ss_pred CCCCccEEEEeecC
Q 025677 223 DPDSKFLRLQFSRN 236 (249)
Q Consensus 223 ~~~~r~LrV~~ak~ 236 (249)
+.|+|+|++.
T Consensus 84 ----r~i~v~~a~~ 93 (105)
T 2pe8_A 84 ----RVVKACFYNL 93 (105)
T ss_dssp ----EECEEEECCH
T ss_pred ----cEEEEEEcCH
Confidence 9999999864
No 183
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.58 E-value=2.4e-15 Score=121.39 Aligned_cols=78 Identities=17% Similarity=0.336 Sum_probs=67.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+++|||+|||+++|+++|+++|++||.|.+|+++.+... |+++|||||+|.+.++|++|++. +..+.+ +.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~--~~~~~g-----~~ 72 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPAT---GRSRGFGFLSFEKPSSVDEVVKT--QHILDG-----KV 72 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTT---SSCCSCEEEEESSTHHHHHHHHS--CCEETT-----EE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCC---CCccceEEEEEccHHHHHHHHhc--ccccCC-----eE
Confidence 589999999999999999999999999999999876422 56677999999999999999984 567887 77
Q ss_pred EEEEeecC
Q 025677 229 LRLQFSRN 236 (249)
Q Consensus 229 LrV~~ak~ 236 (249)
|+|.++..
T Consensus 73 i~v~~~~~ 80 (167)
T 2cjk_A 73 IDPKRAIP 80 (167)
T ss_dssp CCCEECCC
T ss_pred cccccccc
Confidence 88888754
No 184
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.58 E-value=2.2e-15 Score=132.25 Aligned_cols=76 Identities=21% Similarity=0.329 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCCCC---------CHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCce
Q 025677 148 ASSTLYVEGLPADS---------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR 218 (249)
Q Consensus 148 ~~~tLfVgnLp~~~---------teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~ 218 (249)
.++||||+||+.++ +|++|+++|++||.|.+|+|+..+ | ||||+|.+.++|+.|+++|+|..
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k-----G----~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK-----N----CGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG-----T----EEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC-----C----EEEEEeCCHHHHHHHHHHhCCCE
Confidence 46899999999998 799999999999999999998542 3 99999999999999999999999
Q ss_pred e------------CCCCCCCccEEEEeecCC
Q 025677 219 M------------DEDDPDSKFLRLQFSRNP 237 (249)
Q Consensus 219 i------------~g~~~~~r~LrV~~ak~~ 237 (249)
| .+ +.|+|.||+..
T Consensus 204 l~~~~~~e~~~~~~g-----r~L~V~wA~~~ 229 (240)
T 3u1l_A 204 LLLPSDKEWDDRREG-----TGLLVKWANED 229 (240)
T ss_dssp CCCTTSTTGGGGGGS-----CCCEEEECC--
T ss_pred EeccccccccccCCC-----CEEEEEEccCC
Confidence 9 45 78999999875
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.58 E-value=5.1e-15 Score=130.16 Aligned_cols=83 Identities=18% Similarity=0.259 Sum_probs=75.5
Q ss_pred CCcEEEEcCCCCCC-CHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 148 ASSTLYVEGLPADS-TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 148 ~~~tLfVgnLp~~~-teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
..++|||+|||+++ |+++|+++|++||.|.+|+|+.+.+ |+++|||||+|.+.++|.+|++.|||..|.+
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----- 253 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQD----GQLKGFAVLEYETAEMAEEAQQQADGLSLGG----- 253 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSS----CCEEEEEEEECSSHHHHHHHHHHHTTCEETT-----
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCC----CCcccEEEEEeCCHHHHHHHHHHhCCCccCC-----
Confidence 35899999999995 9999999999999999999988764 6777899999999999999999999999998
Q ss_pred ccEEEEeecCCCC
Q 025677 227 KFLRLQFSRNPGP 239 (249)
Q Consensus 227 r~LrV~~ak~~~~ 239 (249)
+.|+|+|++.+..
T Consensus 254 ~~l~v~~a~~~~~ 266 (284)
T 3smz_A 254 SHLRVSFCAPGPP 266 (284)
T ss_dssp EECEEEECCSSSC
T ss_pred eEEEEEEecCCCc
Confidence 8999999987644
No 186
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.58 E-value=2.6e-15 Score=128.12 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=69.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCe--EEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGY--KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i--~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
+++|||+|||+++|+++|+++|++||.| .+|+++.++ |+++|||||+|.+.++|.+|+..|||+.|.+... .
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-----~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~-~ 196 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-----SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNG-P 196 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-----SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSS-S
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-----CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCC-C
Confidence 5899999999999999999999999999 899988765 3344699999999999999999999999998542 1
Q ss_pred ccEEEEee
Q 025677 227 KFLRLQFS 234 (249)
Q Consensus 227 r~LrV~~a 234 (249)
.++.|.|+
T Consensus 197 ~p~~vk~~ 204 (205)
T 3tyt_A 197 YPYTLKLC 204 (205)
T ss_dssp SCEECEEE
T ss_pred cceEEEec
Confidence 46777765
No 187
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.57 E-value=1e-14 Score=121.51 Aligned_cols=77 Identities=19% Similarity=0.330 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCC-CeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeC-CCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD-EDDPD 225 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG-~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~-g~~~~ 225 (249)
++++|||+|||+++|+++|+++|++|| .|.+|+++.+. +|||||+|.+.++|++|++.|||..+. +
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~~g---- 186 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--------RKMALIQMGSVEEAVQALIDLHNHDLGEN---- 186 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT--------SSCEEEECSSHHHHHHHHHHHTSSCCSSC----
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC--------CcEEEEEeCCHHHHHHHHHHhcCCccCCC----
Confidence 368999999999999999999999999 99999987643 239999999999999999999999998 6
Q ss_pred CccEEEEeecCC
Q 025677 226 SKFLRLQFSRNP 237 (249)
Q Consensus 226 ~r~LrV~~ak~~ 237 (249)
+.|+|+|++++
T Consensus 187 -~~l~v~~a~~~ 197 (198)
T 1qm9_A 187 -HHLRVSFSKST 197 (198)
T ss_dssp -CSCCEEEECCC
T ss_pred -CeEEEEeeccc
Confidence 78999999864
No 188
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.56 E-value=1.8e-14 Score=123.83 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCC-CeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeC-CCCCC
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD-EDDPD 225 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG-~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~-g~~~~ 225 (249)
++++|||+|||+++++++|+++|++|| .|.+|+++.+. +| ||||+|.+.++|++|++.|||..+. +
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~----~g----~afV~f~~~~~A~~Ai~~l~g~~~~~g---- 217 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----RK----MALIQMGSVEEAVQALIDLHNHDLGEN---- 217 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS----TT----CEEEEESSHHHHHHHHHHHTTCBSSSS----
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC----Cc----EEEEEECCHHHHHHHHHHHCCCccCCC----
Confidence 368999999999999999999999999 99999997642 13 9999999999999999999999998 6
Q ss_pred CccEEEEeecCC
Q 025677 226 SKFLRLQFSRNP 237 (249)
Q Consensus 226 ~r~LrV~~ak~~ 237 (249)
+.|+|+|++++
T Consensus 218 -~~l~v~~a~~~ 228 (229)
T 2adc_A 218 -HHLRVSFSKST 228 (229)
T ss_dssp -CBCEEEECSSC
T ss_pred -CeEEEEEecCC
Confidence 78999999864
No 189
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.54 E-value=7.1e-15 Score=122.53 Aligned_cols=76 Identities=21% Similarity=0.344 Sum_probs=70.0
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 149 SSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 149 ~~tLfVgnLp~-~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
+++|||+|||+ ++|+++|+++|++||.|.+|+++.++ +| ||||+|.+.++|++|++.|||..+.+ +
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g----~afV~f~~~~~a~~A~~~l~~~~~~g-----~ 69 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KE----NALVQMADGNQAQLAMSHLNGHKLHG-----K 69 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SS----CCEEECTTTHHHHHHHHHHTTCCCSS-----C
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CC----EEEEEECCHHHHHHHHHHhCCCeecC-----e
Confidence 58999999999 99999999999999999999988764 23 99999999999999999999999998 7
Q ss_pred cEEEEeecCC
Q 025677 228 FLRLQFSRNP 237 (249)
Q Consensus 228 ~LrV~~ak~~ 237 (249)
.|+|+|++..
T Consensus 70 ~l~v~~a~~~ 79 (198)
T 1qm9_A 70 PIRITLSKHQ 79 (198)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEecCC
Confidence 8999999864
No 190
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.9e-14 Score=107.89 Aligned_cols=78 Identities=13% Similarity=0.171 Sum_probs=66.3
Q ss_pred CCcEEEEcCCCCCCC-----------HHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcC
Q 025677 148 ASSTLYVEGLPADST-----------KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG 216 (249)
Q Consensus 148 ~~~tLfVgnLp~~~t-----------eeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG 216 (249)
++++|+|.||....+ +++|+++|++||.|.+|.|.... ++|||||+|.+.++|++|++.|||
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~-------~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRH-------PDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTC-------TTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCC-------CCEEEEEEECCHHHHHHHHHHcCC
Confidence 478999999954432 68999999999999999663221 345999999999999999999999
Q ss_pred ceeCCCCCCCccEEEEeecCC
Q 025677 217 YRMDEDDPDSKFLRLQFSRNP 237 (249)
Q Consensus 217 ~~i~g~~~~~r~LrV~~ak~~ 237 (249)
..|.+ ++|+|+|++..
T Consensus 87 ~~~~g-----r~l~v~~a~~~ 102 (112)
T 2dit_A 87 RWFGG-----RQITAQAWDGT 102 (112)
T ss_dssp CEETT-----EECEEEECCSC
T ss_pred CEECC-----cEEEEEEeCCC
Confidence 99998 89999999764
No 191
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.54 E-value=2.7e-14 Score=125.49 Aligned_cols=82 Identities=24% Similarity=0.361 Sum_probs=74.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
..+|||+|||+++|+++|+++|++||.|.+++++.+... |+++|||||+|.+.++|++|++.|||..+.+ +.
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-----~~ 166 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERT---GQSKGYGFAEYMKKDSAARAKSDLLGKPLGP-----RT 166 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCC---CccceEEEEEECCHHHHHHHHHHhCCCEeCC-----cE
Confidence 379999999999999999999999999999999876432 6788899999999999999999999999998 89
Q ss_pred EEEEeecCCC
Q 025677 229 LRLQFSRNPG 238 (249)
Q Consensus 229 LrV~~ak~~~ 238 (249)
|+|+|++...
T Consensus 167 i~v~~a~~~~ 176 (284)
T 3smz_A 167 LYVHWTDAGQ 176 (284)
T ss_dssp CEEEECCGGG
T ss_pred EEEEECCCCC
Confidence 9999997653
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.52 E-value=4e-15 Score=121.34 Aligned_cols=82 Identities=17% Similarity=0.287 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 147 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 147 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
.+.++|||+|||+++|+++|+++|++||.+..+.+....+ |+++|||||+|.+.++|++|+ .|||..|.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~----~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----- 80 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRT----GTNRKFGYVDFESAEDLEKAL-ELTGLKVFG----- 80 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEE----ETTTTEEEEEESSHHHHHHHH-HGGGEEETT-----
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCC----CccccEEEEEECCHHHHHHHH-hcCCCEeCC-----
Confidence 3468999999999999999999999998876633333333 455569999999999999999 599999999
Q ss_pred ccEEEEeecCCC
Q 025677 227 KFLRLQFSRNPG 238 (249)
Q Consensus 227 r~LrV~~ak~~~ 238 (249)
+.|+|+|++...
T Consensus 81 ~~l~v~~~~~~~ 92 (175)
T 1fje_B 81 NEIKLEKPKGRD 92 (175)
T ss_dssp EEEEEECCCCSS
T ss_pred eEEEEecCCCcc
Confidence 899999998653
No 193
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.52 E-value=2e-14 Score=126.89 Aligned_cols=82 Identities=12% Similarity=0.216 Sum_probs=72.6
Q ss_pred CCcEEEEcCCCCC-CCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025677 148 ASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 226 (249)
Q Consensus 148 ~~~tLfVgnLp~~-~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 226 (249)
+.++|||+|||++ +|+++|+++|++||.|..|+|+.+... .|+++|||||+|.+.++|++|+ .|||..|.+
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~--tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g----- 280 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKE--HSFNNCCAFMVFENKDSAERAL-QMNRSLLGN----- 280 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC-----CCCEEEEEEESSHHHHHHHG-GGTTEEETT-----
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCc--CCCCceEEEEEeCCHHHHHHHH-HhcCCEECC-----
Confidence 4689999999999 999999999999999999999876530 1556679999999999999999 999999999
Q ss_pred ccEEEEeecCC
Q 025677 227 KFLRLQFSRNP 237 (249)
Q Consensus 227 r~LrV~~ak~~ 237 (249)
+.|+|+|++++
T Consensus 281 ~~i~V~~a~~k 291 (292)
T 2ghp_A 281 REISVSLADKK 291 (292)
T ss_dssp EEEEEEECCCC
T ss_pred cEEEEEEecCC
Confidence 89999999874
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.51 E-value=4.5e-14 Score=123.70 Aligned_cols=75 Identities=24% Similarity=0.396 Sum_probs=68.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
++++|||+|||+++|+++|+++|++||.|.+|++..++ |||||+|.+.++|++|++.|||..|.+ +
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~k---------g~afV~f~~~~~A~~A~~~l~g~~i~g-----~ 86 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR---------GFGFIRLESRTLAEIAKAELDGTILKS-----R 86 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTT---------TEEEEECSSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCC---------cEEEEEECCHHHHHHHHHHcCCcEECC-----c
Confidence 35899999999999999999999999999999986432 399999999999999999999999998 8
Q ss_pred cEEEEeecC
Q 025677 228 FLRLQFSRN 236 (249)
Q Consensus 228 ~LrV~~ak~ 236 (249)
.|+|.|+..
T Consensus 87 ~l~v~~a~~ 95 (261)
T 3sde_A 87 PLRIRFATH 95 (261)
T ss_dssp ECEEEECCC
T ss_pred eeEeeeccc
Confidence 999999875
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.49 E-value=8.7e-14 Score=121.85 Aligned_cols=83 Identities=17% Similarity=0.179 Sum_probs=71.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHc-CceeCCCCCCCc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ-GYRMDEDDPDSK 227 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~Ln-G~~i~g~~~~~r 227 (249)
.++|||+|||+++|+++|+++|++||.|.+|+|+.+.+ |+++|||||+|.+.++|.+|++.|| +..+.... .+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~--~r 169 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDR----GRATGKGFVEFAAKPPARKALERCGDGAFLLTTT--PR 169 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT----SCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSS--CC
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCC----CCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCC--Cc
Confidence 47999999999999999999999999999999997754 6777899999999999999999995 55554222 18
Q ss_pred cEEEEeecCC
Q 025677 228 FLRLQFSRNP 237 (249)
Q Consensus 228 ~LrV~~ak~~ 237 (249)
+|.|+|++..
T Consensus 170 ~i~v~~~~~~ 179 (261)
T 3sde_A 170 PVIVEPMEQF 179 (261)
T ss_dssp BCEEEECCCE
T ss_pred eEEEeecccc
Confidence 9999999764
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.48 E-value=7.3e-14 Score=113.12 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=66.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCC----C-------CeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPF----V-------GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 217 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~f----G-------~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~ 217 (249)
+++|||+|||+++|+++|+++|++| | .|.++++... +|||||+|.++++|++|+ .|||.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~---------~g~afV~f~~~~~A~~A~-~~~~~ 73 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---------KNFAFLEFRSVDETTQAM-AFDGI 73 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT---------TTEEEEEESSHHHHHHHG-GGTTC
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC---------CCEEEEEeCCHHHHHHHH-HhCCc
Confidence 5899999999999999999999999 6 6777766533 249999999999999999 89999
Q ss_pred eeCCCCCCCccEEEEeecCCC
Q 025677 218 RMDEDDPDSKFLRLQFSRNPG 238 (249)
Q Consensus 218 ~i~g~~~~~r~LrV~~ak~~~ 238 (249)
.+.+ +.|+|++++...
T Consensus 74 ~~~g-----~~i~v~~~~~~~ 89 (172)
T 2g4b_A 74 IFQG-----QSLKIRRPHDYQ 89 (172)
T ss_dssp EETT-----EECEEECCSSCC
T ss_pred EecC-----ceeeecCCcccC
Confidence 9999 889999987653
No 197
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.47 E-value=1.1e-13 Score=114.42 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=64.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCC----C-------CeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPF----V-------GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 217 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~f----G-------~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~ 217 (249)
+++|||+|||+++|+++|+++|++| | .|.++++.. ++|||||+|.+.++|++|+ .|||.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~---------~~g~afV~F~~~~~A~~Al-~l~g~ 73 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---------DKNFAFLEFRSVDETTQAM-AFDGI 73 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET---------TTTEEEEEESCSHHHHHHG-GGTTE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC---------CCCEEEEEeCCHHHHHHHH-HhcCC
Confidence 5899999999999999999999999 5 566665532 2349999999999999999 89999
Q ss_pred eeCCCCCCCccEEEEeecCC
Q 025677 218 RMDEDDPDSKFLRLQFSRNP 237 (249)
Q Consensus 218 ~i~g~~~~~r~LrV~~ak~~ 237 (249)
.|.+ +.|+|+|++..
T Consensus 74 ~~~g-----~~i~v~~~~~~ 88 (198)
T 2yh0_A 74 IFQG-----QSLKIRRPHDY 88 (198)
T ss_dssp EETT-----EEEEEECCCCC
T ss_pred EEcC-----ceEEEeCCCCC
Confidence 9999 89999999765
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.47 E-value=1.4e-13 Score=105.83 Aligned_cols=82 Identities=12% Similarity=0.167 Sum_probs=68.0
Q ss_pred CcEEEEcCC--CCCCC--------HHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCce
Q 025677 149 SSTLYVEGL--PADST--------KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR 218 (249)
Q Consensus 149 ~~tLfVgnL--p~~~t--------eeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~ 218 (249)
++.|.+.|+ |.++. +++|++.|++||.|.+|+|+.+..+. .++++||+||+|.+.++|++|++.|||..
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~-~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGV-EVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTB-CCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCC-CcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 689999998 33443 46899999999999999998654321 12456799999999999999999999999
Q ss_pred eCCCCCCCccEEEEeecC
Q 025677 219 MDEDDPDSKFLRLQFSRN 236 (249)
Q Consensus 219 i~g~~~~~r~LrV~~ak~ 236 (249)
+.+ |+|+|+|+..
T Consensus 84 f~G-----R~i~v~~~~~ 96 (105)
T 3v4m_A 84 FAN-----RVVVTKYCDP 96 (105)
T ss_dssp ETT-----EECEEEEECH
T ss_pred eCC-----CEEEEEEeCH
Confidence 999 9999999853
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.46 E-value=2e-14 Score=110.33 Aligned_cols=73 Identities=14% Similarity=0.194 Sum_probs=63.4
Q ss_pred EEcCCCCCCCHHHHHHHh------------cCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeC
Q 025677 153 YVEGLPADSTKREVAHIF------------RPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 220 (249)
Q Consensus 153 fVgnLp~~~teeeL~~lF------------~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~ 220 (249)
.+.+|++++++++|+++| ++||.|.+|+|+.+.. ++++|||||+|.+.++|++|++.|||..+.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~----~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG----DHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS----SSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC----CCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 367888888888887777 9999999999987653 567789999999999999999999999999
Q ss_pred CCCCCCccEEEEee
Q 025677 221 EDDPDSKFLRLQFS 234 (249)
Q Consensus 221 g~~~~~r~LrV~~a 234 (249)
+ ++|+|+|+
T Consensus 95 G-----r~i~v~~s 103 (104)
T 1jmt_A 95 G-----QPIHAELS 103 (104)
T ss_dssp T-----EECCEEEC
T ss_pred C-----EEEEEEEc
Confidence 9 89999986
No 200
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=4.1e-13 Score=102.64 Aligned_cols=76 Identities=12% Similarity=0.112 Sum_probs=60.7
Q ss_pred cEEEEcCCC-------CCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025677 150 STLYVEGLP-------ADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 222 (249)
Q Consensus 150 ~tLfVgnLp-------~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~ 222 (249)
++|-|.-.. .++|+++|+++|++||.|.+|+|+. +++|||||+|.+.++|++|++.+++ +.+
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~--------~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g- 79 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS--------KKPGTAVVEFATVKAAELAVQNEVG--LVD- 79 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES--------SSSSEEEEEESCHHHHHHHHHTCCB--CSS-
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc--------CCCCEEEEEECCHHHHHHHHHhcCC--CCC-
Confidence 456555433 4689999999999999999999882 2345999999999999999998655 455
Q ss_pred CCCCccEEEEeecCCCCC
Q 025677 223 DPDSKFLRLQFSRNPGPR 240 (249)
Q Consensus 223 ~~~~r~LrV~~ak~~~~r 240 (249)
++|+|+|++.+..+
T Consensus 80 ----~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 80 ----NPLKISWLEGQPQD 93 (100)
T ss_dssp ----SBCEEECSSCCCCC
T ss_pred ----CeEEEEEccCCCCC
Confidence 78999999876443
No 201
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.46 E-value=1.1e-13 Score=122.07 Aligned_cols=81 Identities=16% Similarity=0.249 Sum_probs=69.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCC-CeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 227 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG-~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 227 (249)
.++|||+|||+++|+++|+++|++|| .|.+|+++.+.. |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 187 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF----NTSRRFAYIDVTSKEDARYCVEKLNGLKIEG-----Y 187 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-----------CCEEEEECSSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC----CCcceEEEEEECCHHHHHHHHHHhCCCEeCC-----c
Confidence 58999999999999999999999999 999999987654 4455699999999999999999999999999 8
Q ss_pred cEEEEeecCCC
Q 025677 228 FLRLQFSRNPG 238 (249)
Q Consensus 228 ~LrV~~ak~~~ 238 (249)
.|+|.|+....
T Consensus 188 ~l~v~~a~~~~ 198 (292)
T 2ghp_A 188 TLVTKVSNPLE 198 (292)
T ss_dssp ECEEEECCCC-
T ss_pred EEEEEECCCCc
Confidence 99999997653
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.44 E-value=2e-13 Score=125.57 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=66.4
Q ss_pred CCCCcEEEEcC--CCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025677 146 PDASSTLYVEG--LPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 223 (249)
Q Consensus 146 ~~~~~tLfVgn--Lp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 223 (249)
..++++|||+| |++.+||++|+++|++||.|++|++... ||||||+|.+.++|++|++.|||..+.+..
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~---------kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---------KPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT---------CSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---------CCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 44578999999 5889999999999999999999877542 249999999999999999999999995421
Q ss_pred CCCccEEEEeec
Q 025677 224 PDSKFLRLQFSR 235 (249)
Q Consensus 224 ~~~r~LrV~~ak 235 (249)
-.+.+|.|.|++
T Consensus 86 g~~~~ly~~~~~ 97 (345)
T 3tht_A 86 GQKITLYLNFVE 97 (345)
T ss_dssp SCEEECEEEECS
T ss_pred CCceEEEEEEee
Confidence 111368888885
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.44 E-value=5.1e-13 Score=105.01 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCC--C---CCHHHHHHHhcCCCCeEEEEEeeCCCc-cCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025677 148 ASSTLYVEGLPA--D---STKREVAHIFRPFVGYKEVRLVIKESK-LRGGDPLILCFVDFENPACAATALSALQGYRMDE 221 (249)
Q Consensus 148 ~~~tLfVgnLp~--~---~teeeL~~lF~~fG~i~~v~l~~~~~~-~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g 221 (249)
++++|++.|+-. + -.++||++.|++||.|.+|+|+.+... ...++++||+||+|.+.++|++|++.|||..+.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 368999999842 2 237899999999999999999875431 1235677899999999999999999999999999
Q ss_pred CCCCCccEEEEeecC
Q 025677 222 DDPDSKFLRLQFSRN 236 (249)
Q Consensus 222 ~~~~~r~LrV~~ak~ 236 (249)
|.|+|+|+..
T Consensus 99 -----R~i~v~~~~~ 108 (118)
T 3ue2_A 99 -----RKVVAEVYDQ 108 (118)
T ss_dssp -----EECEEEEECH
T ss_pred -----cEEEEEEcCh
Confidence 9999999853
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.25 E-value=3.1e-11 Score=94.28 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=64.5
Q ss_pred CCCCcEEEEcCCCCCC----------CHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHc
Q 025677 146 PDASSTLYVEGLPADS----------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 215 (249)
Q Consensus 146 ~~~~~tLfVgnLp~~~----------teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~Ln 215 (249)
+.+++.|.+.|+=..- .++||++.|++||.|.+|.|..+. ++||+||+|.+.++|++|++.||
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-------~~G~~fV~f~~~e~A~~Ai~~ln 76 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-------AQGNVYVKCPSIAAAIAAVNALH 76 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-------TTCCEEEECSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-------CcEEEEEEECCHHHHHHHHHHhC
Confidence 3446889999974321 145889999999999999886542 24599999999999999999999
Q ss_pred CceeCCCCCCCccEEEEeec
Q 025677 216 GYRMDEDDPDSKFLRLQFSR 235 (249)
Q Consensus 216 G~~i~g~~~~~r~LrV~~ak 235 (249)
|..+.+ +.|+|+|+.
T Consensus 77 G~~f~G-----R~i~v~~~~ 91 (114)
T 3s6e_A 77 GRWFAG-----KMITAAYVP 91 (114)
T ss_dssp TCEETT-----EECEEEEEC
T ss_pred CCEECC-----EEEEEEEEc
Confidence 999999 999999985
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=1.2e-10 Score=87.45 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=61.6
Q ss_pred cEEEEcCCCC----CCCH----HHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025677 150 STLYVEGLPA----DSTK----REVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 221 (249)
Q Consensus 150 ~tLfVgnLp~----~~te----eeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g 221 (249)
.||+|.-++. +.-+ .+|.+.|++||.|..++++.+ .+||+|.+.++|.+|++ |||+++.+
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-----------~~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-----------KMWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-----------SEEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-----------CEEEEECChHHHHHHHh-cCCeEeCC
Confidence 6888887762 2323 579999999999999999886 38999999999999998 99999999
Q ss_pred CCCCCccEEEEeecCCC
Q 025677 222 DDPDSKFLRLQFSRNPG 238 (249)
Q Consensus 222 ~~~~~r~LrV~~ak~~~ 238 (249)
|.|+|++++..=
T Consensus 76 -----r~LkV~lkt~dW 87 (91)
T 2dnr_A 76 -----RTITIALKSPSG 87 (91)
T ss_dssp -----EEEEEEECCCSS
T ss_pred -----eEEEEEeCCCCc
Confidence 999999998753
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=2.9e-10 Score=89.81 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=62.4
Q ss_pred CcEEEEcCCCCC-CCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCC-HHHHHHHHHHHc--CceeCCCCC
Q 025677 149 SSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFEN-PACAATALSALQ--GYRMDEDDP 224 (249)
Q Consensus 149 ~~tLfVgnLp~~-~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~-~~~A~~Al~~Ln--G~~i~g~~~ 224 (249)
...|||+||+++ +++++|+++|++||.|..|.++.+.. .|||.|.+ .++|++|+++|| +..|.+
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~---------tgfVrf~~~~~~A~~av~~ln~~~~~i~g--- 85 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK---------EGIILFKEKAKEALGKAKDANNGNLQLRN--- 85 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS---------EEEEEESSCHHHHHHHHHHTTTSCBCTTS---
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC---------EEEEEECCChHHHHHHHHHhhcCCcEEeC---
Confidence 489999999999 99999999999999999999987654 79999999 899999999995 667777
Q ss_pred CCccEEEEee
Q 025677 225 DSKFLRLQFS 234 (249)
Q Consensus 225 ~~r~LrV~~a 234 (249)
..++++..
T Consensus 86 --~~~~~evL 93 (121)
T 1owx_A 86 --KEVTWEVL 93 (121)
T ss_dssp --SSEEEEEC
T ss_pred --cEEEEEEC
Confidence 45666543
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=9.7e-10 Score=83.02 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=59.7
Q ss_pred cEEEEcCCCCC------CCH---HHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeC
Q 025677 150 STLYVEGLPAD------STK---REVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 220 (249)
Q Consensus 150 ~tLfVgnLp~~------~te---eeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~ 220 (249)
.||+|.-++.+ ..+ .+|.+.|++||.|..++++.++ +||+|.+.++|.+|++ |||+++.
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-----------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-----------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-----------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-----------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 69999888743 232 4688999999999999999873 8999999999999998 9999999
Q ss_pred CCCCCCccEEEEeec
Q 025677 221 EDDPDSKFLRLQFSR 235 (249)
Q Consensus 221 g~~~~~r~LrV~~ak 235 (249)
+ +.|+|++..
T Consensus 84 G-----r~L~V~~k~ 93 (95)
T 1ufw_A 84 G-----RAVKISGPS 93 (95)
T ss_dssp T-----EEEEEECCC
T ss_pred C-----eEEEEeccC
Confidence 9 899999854
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.87 E-value=6.9e-09 Score=88.31 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=60.5
Q ss_pred CCHHHHHHHhcCCCCeEEEEEeeC-CCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEeec
Q 025677 161 STKREVAHIFRPFVGYKEVRLVIK-ESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSR 235 (249)
Q Consensus 161 ~teeeL~~lF~~fG~i~~v~l~~~-~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~LrV~~ak 235 (249)
-.+++|++.|++||.|.++.|..+ ......+.++|++||+|.+.++|++|++.|||..+.+ |+|+++|..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g-----r~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG-----RKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS-----SBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC-----eEEEEEEcC
Confidence 457799999999999999999843 2333446788899999999999999999999999999 899999974
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.49 E-value=3.6e-07 Score=70.71 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=64.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCC-----CCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPF-----VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 223 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~f-----G~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 223 (249)
.++|-+-|||..+++..|+.+.+++ |.|+++.++.+.. -|+|+|.+...|.+|.-+|+|++|.+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~---------GAivef~d~~~AgKasLaL~G~ef~g-- 89 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN---------GAIIIFRDSKFAAKMLMILNGSQFQG-- 89 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT---------EEEEECSCHHHHHHHHHHHSSEEETT--
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC---------ceEEEEccchhhHHHHhhcCCeeecC--
Confidence 4889999999999999999999999 9999999998863 49999999999999999999999998
Q ss_pred CCCccEEEE
Q 025677 224 PDSKFLRLQ 232 (249)
Q Consensus 224 ~~~r~LrV~ 232 (249)
+.|++.
T Consensus 90 ---r~Lr~g 95 (117)
T 2l9w_A 90 ---KVIRSG 95 (117)
T ss_dssp ---EEEEEE
T ss_pred ---eEEEec
Confidence 888874
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.87 E-value=1.9e-05 Score=60.47 Aligned_cols=74 Identities=20% Similarity=0.213 Sum_probs=62.5
Q ss_pred cEEEEcCCCCCC-C----HHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025677 150 STLYVEGLPADS-T----KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 224 (249)
Q Consensus 150 ~tLfVgnLp~~~-t----eeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 224 (249)
++|+|.||+.++ + +++++++|.+|+++......+.-. =..|.|.++++|.+|...|++..+.+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR---------Rirv~F~~~~~A~~AR~~Lh~~~f~g--- 73 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK---------RVRINFSNPLSAADARLRLHKTEFLG--- 73 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT---------EEEEECSSTTHHHHHHHTSTTSEETT---
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce---------EEEEEeCChHHHHHHHHHhccceecC---
Confidence 799999999765 2 357899999999988877665432 36899999999999999999999999
Q ss_pred CCccEEEEeecCC
Q 025677 225 DSKFLRLQFSRNP 237 (249)
Q Consensus 225 ~~r~LrV~~ak~~ 237 (249)
+.|+|-|++..
T Consensus 74 --~~~r~YFgq~~ 84 (104)
T 1wey_A 74 --KEMKLYFAQTL 84 (104)
T ss_dssp --EECEEECCCCS
T ss_pred --ceeEEEecCCC
Confidence 78999999753
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.73 E-value=0.00039 Score=51.91 Aligned_cols=87 Identities=14% Similarity=0.223 Sum_probs=66.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 229 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 229 (249)
.+|-|.+||+.+||+++.+.++....+.....+..+.... -..-.-|+|.|.+.+++..-.+.++|+.+.+.+-+..+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~-~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLY-PHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSST-TCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCC-CCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 4789999999999999999999998877666664332110 122347999999999999999999999998865433455
Q ss_pred EEEeecCC
Q 025677 230 RLQFSRNP 237 (249)
Q Consensus 230 rV~~ak~~ 237 (249)
.|+||-+.
T Consensus 81 ~VE~AP~q 88 (91)
T 1uw4_A 81 IVEFAPFQ 88 (91)
T ss_dssp EEEECSSC
T ss_pred EEEEcCCC
Confidence 78887654
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.69 E-value=0.00018 Score=54.42 Aligned_cols=54 Identities=17% Similarity=0.339 Sum_probs=46.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHc
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 215 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~Ln 215 (249)
..++| +.|.++...||.++|++||.| .|+-+++. -|||.|.+++.|..|++.+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT----------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT----------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT----------EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC----------eEEEEecCHHHHHHHHHhcc
Confidence 56777 999999999999999999976 46666664 69999999999999998764
No 213
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.27 E-value=0.0009 Score=50.48 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=63.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 228 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 228 (249)
+-+|-|..||+.+||+++.+.++.+-.+.....+..+... +-..-.-|+|.|.+.++...-.+.++|+.+.+.+-+.-+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~-~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSL-YPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSS-CCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCC-CCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 4579999999999999999988887665433333221111 011123589999999999999999999999887644456
Q ss_pred EEEEeecC
Q 025677 229 LRLQFSRN 236 (249)
Q Consensus 229 LrV~~ak~ 236 (249)
-.|+||-+
T Consensus 88 a~VE~APy 95 (97)
T 2l08_A 88 AVVEFAPF 95 (97)
T ss_dssp EEEEECCC
T ss_pred eEEEecCC
Confidence 77888765
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.09 E-value=0.00088 Score=50.71 Aligned_cols=54 Identities=17% Similarity=0.338 Sum_probs=45.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHc
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 215 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~Ln 215 (249)
..|+| +.|.++...||.++|++||.| .|+-+.+. -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT----------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT----------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT----------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC----------eEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999954 46666654 69999999999999998774
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.84 E-value=0.0041 Score=47.36 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=48.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcC----C-CCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRP----F-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 221 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~----f-G~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g 221 (249)
.++|.|.|||.+++++.|+-+|++ - |.|.+|+... . -|+|+|.+.+.|++.++. .-+.+.+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-~----------~AvItF~d~~va~rVL~k-~~H~L~~ 73 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-C----------GGVLTFREPADAERVLAQ-ADHELHG 73 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-T----------EEEEEESSHHHHHHHHTC-SCCBSSS
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-C----------cEEEEEcChHHHHHHhcC-CcceecC
Confidence 479999999999999999999987 2 5677777654 1 599999999999888753 2455555
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.59 E-value=0.0064 Score=47.45 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=50.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 221 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g 221 (249)
...|-|-+.|+... ..|.+.|++||.|.+....... . +-.|.|.++.+|++||. .||..|.+
T Consensus 24 ~~wVtVFGFp~~~~-~~VL~~F~~~G~Iv~~~~~~~~-----N----WihI~Y~s~~~A~rAL~-kNG~ii~g 85 (119)
T 1wwh_A 24 DTWVTVFGFPQASA-SYILLQFAQYGNILKHVMSNTG-----N----WMHIRYQSKLQARKALS-KDGRIFGE 85 (119)
T ss_dssp GGEEEEECCCGGGH-HHHHHHHHTTSCEEEEEECSSS-----S----EEEEEESSHHHHHHHHT-TTTCEETT
T ss_pred CCEEEEECCCHHHH-HHHHHHHHhhCcEEEeccCCCC-----C----eEEEEeCCHHHHHHHHH-hCCeEecC
Confidence 47899999998864 4566789999999988762221 1 99999999999999996 59999976
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.90 E-value=0.0032 Score=59.73 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=41.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHH
Q 025677 148 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 211 (249)
Q Consensus 148 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al 211 (249)
+.++|||. .|..+++.+|.+.|++||.|.++.+-.++ | -||.|||.+.+++..++
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g---~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----G---LYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----S---EEEEEECC---CCHHHH
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----C---eEEEEEeCCHHHHHHHH
Confidence 35789997 79999999999999999999998776543 3 39999999999888664
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.56 E-value=0.012 Score=46.56 Aligned_cols=26 Identities=8% Similarity=-0.120 Sum_probs=22.9
Q ss_pred ccceEEEEEeCCHHHHHHHHHHHcCc
Q 025677 192 DPLILCFVDFENPACAATALSALQGY 217 (249)
Q Consensus 192 ~~kg~aFVeF~~~~~A~~Al~~LnG~ 217 (249)
+++|||||+|.+.++|++|++.+++.
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhccc
Confidence 46679999999999999999988764
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.54 E-value=0.015 Score=45.74 Aligned_cols=39 Identities=8% Similarity=-0.081 Sum_probs=34.7
Q ss_pred ccceEEEEEeCCHHHHHHHHHHH-cCceeCCCCCCCccEEEEeecC
Q 025677 192 DPLILCFVDFENPACAATALSAL-QGYRMDEDDPDSKFLRLQFSRN 236 (249)
Q Consensus 192 ~~kg~aFVeF~~~~~A~~Al~~L-nG~~i~g~~~~~r~LrV~~ak~ 236 (249)
+.+|+++|+|.+.++|++|++.| ||..+++ .|++++++.
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G------~~~~~~a~~ 50 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG------EWTYDDATK 50 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC------EEEEETTTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC------ceecccccC
Confidence 45679999999999999999999 9999988 489998865
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.16 E-value=0.22 Score=47.56 Aligned_cols=54 Identities=17% Similarity=0.345 Sum_probs=45.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHc
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 215 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~Ln 215 (249)
..|+|+ +|..+...+|.++|+.||.+ +|+-+.+. .|||.|.+.+.|..++++++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt----------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT----------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS----------EEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC----------eEEEEECCHHHHHHHHHHHH
Confidence 678887 88889999999999999964 56555553 79999999999999999885
No 221
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.50 E-value=0.11 Score=41.05 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=46.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEE-EEee---------CCCccCCC-ccceEEEEEeCCHHHHHHHHHHHcCce
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEV-RLVI---------KESKLRGG-DPLILCFVDFENPACAATALSALQGYR 218 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v-~l~~---------~~~~~~~G-~~kg~aFVeF~~~~~A~~Al~~LnG~~ 218 (249)
..|-|-+.|.+.+..-| +.|++||.|.+- .+.. .+.++-.+ .-..|-.|+|+++.+|.+||+ .||..
T Consensus 8 ~~VtVFGFp~~~~~~VI-~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMANQVI-AYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHHHHH-HHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHHHHHH-HHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 56778888887766655 679999999762 1111 00010000 012388999999999999995 69999
Q ss_pred eCC
Q 025677 219 MDE 221 (249)
Q Consensus 219 i~g 221 (249)
|.+
T Consensus 86 i~G 88 (132)
T 3p3d_A 86 FNG 88 (132)
T ss_dssp ETT
T ss_pred eCc
Confidence 988
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=70.88 E-value=11 Score=25.73 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=41.9
Q ss_pred EEEEcCC-CCCCCHHHHHHHhcCCCCe-----EEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025677 151 TLYVEGL-PADSTKREVAHIFRPFVGY-----KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 224 (249)
Q Consensus 151 tLfVgnL-p~~~teeeL~~lF~~fG~i-----~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 224 (249)
||||..= -..++..+|..++..-+.+ -.+++... |.||+-.. +.|+.+++.|++..+.+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-----------~s~v~v~~-~~~~~~~~~l~~~~i~g--- 66 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN-----------ASYVEILN-GKGPHVLKVMKNTTVKG--- 66 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS-----------CEEEEECT-TCHHHHHHHHTTCCC-----
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC-----------cEEEEECH-HHHHHHHHHhccccCcC---
Confidence 4666321 2336667777777765554 34555433 78999887 56788999999999998
Q ss_pred CCccEEEEeec
Q 025677 225 DSKFLRLQFSR 235 (249)
Q Consensus 225 ~~r~LrV~~ak 235 (249)
+.++|+.++
T Consensus 67 --~~~~v~~~~ 75 (76)
T 2g0c_A 67 --KQLKVNKAN 75 (76)
T ss_dssp ---CCCEEECC
T ss_pred --ceEEEEECC
Confidence 678887654
No 223
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=62.35 E-value=1.6 Score=32.35 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=0.0
Q ss_pred CcEEEEcCCCCCCCHHH
Q 025677 149 SSTLYVEGLPADSTKRE 165 (249)
Q Consensus 149 ~~tLfVgnLp~~~teee 165 (249)
.++|||+|||+++|++.
T Consensus 97 ~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 97 FTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -----------------
T ss_pred CCceEeCCCCCCccccc
Confidence 46799999999999874
No 224
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=35.52 E-value=57 Score=21.12 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=43.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHHcCce
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR 218 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~LnG~~ 218 (249)
.+|.|.++...-....|+..+.. .+|..+.+.... +-+.|+|.+.+...++++. -|+.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~---------~~~~v~~~~~~~i~~~i~~-~Gy~ 64 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE---------AVVAGNKEDVDKYIKAVEA-AGYQ 64 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE---------EEEEEEGGGHHHHHHHHHH-TTCE
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC---------CEEEEEECCHHHHHHHHHH-cCCc
Confidence 57899999988888999999999 889888775432 1578888855666666664 3554
No 225
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=30.46 E-value=93 Score=19.39 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=38.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCC---HHHHHHHHH
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFEN---PACAATALS 212 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~---~~~A~~Al~ 212 (249)
.+|.|.++...-....++..+....++..+.+..... -+.|+|.. .+...++++
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~---------~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALE---------QAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTT---------EEEEEECTTCCHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCC---------EEEEEECCCCCHHHHHHHHH
Confidence 4688889887777888999999999998888765431 57788843 334444444
No 226
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=25.88 E-value=2e+02 Score=21.10 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=44.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHHHHHHHHHH
Q 025677 149 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL 214 (249)
Q Consensus 149 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~A~~Al~~L 214 (249)
++-+-|-|+|..+-+.|+.-.....|---.+..+.. .|.+.|.+.++-..|++.|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyidg-----------qamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG-----------QAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS-----------CEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC-----------eeEEEecCChHHHHHHHHH
Confidence 467788899999999888777777776555665543 6999999999999999877
No 227
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=24.21 E-value=1.4e+02 Score=18.84 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=41.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeC----CHHHHHHHHHH
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFE----NPACAATALSA 213 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~----~~~~A~~Al~~ 213 (249)
.+|.|.++...-....++..+.+..+|.++.+.... + -+.|+|. +.+...++++.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~-----~----~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQ-----N----RADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGG-----T----EEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecC-----C----EEEEEECCCCCCHHHHHHHHHH
Confidence 468888988777788899999999999888776443 1 5789986 44566666654
No 228
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=23.96 E-value=1.9e+02 Score=23.36 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=35.1
Q ss_pred EEEEcCCCCC---------CCHHHHHHHh--cCCCCeEEEEEeeCCCccCCCccceEEEEEeCCHHH
Q 025677 151 TLYVEGLPAD---------STKREVAHIF--RPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPAC 206 (249)
Q Consensus 151 tLfVgnLp~~---------~teeeL~~lF--~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~~~~ 206 (249)
+..|-|+|.. ....+|++.| +.|.+++ |+.+....++. |++.|+|.+.-.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~-----g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHS-----GTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEE-----EEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCc-----eeEEEEecCChH
Confidence 5667788862 3457899977 9998865 66665554443 499999998554
No 229
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=21.69 E-value=1.5e+02 Score=18.10 Aligned_cols=58 Identities=16% Similarity=0.422 Sum_probs=39.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCC----HHHHHHHHHHHcCc
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFEN----PACAATALSALQGY 217 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~----~~~A~~Al~~LnG~ 217 (249)
.+|.|.++........++..+....+|..+.+.... + -+.|.|.. .+...++++.+ |+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~-----~----~~~v~~~~~~~~~~~i~~~i~~~-G~ 66 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLAN-----S----NGTVEYDPLLTSPETLRGAIEDM-GF 66 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTT-----T----EEEEEECTTTCCHHHHHHHHHHH-TC
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccC-----C----EEEEEECCCcCCHHHHHHHHHHC-CC
Confidence 467888887655667788889888888877765443 2 57888864 34455556554 44
No 230
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=21.14 E-value=1.5e+02 Score=18.04 Aligned_cols=59 Identities=20% Similarity=0.344 Sum_probs=39.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcCCCCeEEEEEeeCCCccCCCccceEEEEEeCC----HHHHHHHHHHHcCce
Q 025677 150 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFEN----PACAATALSALQGYR 218 (249)
Q Consensus 150 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~v~l~~~~~~~~~G~~kg~aFVeF~~----~~~A~~Al~~LnG~~ 218 (249)
.+|.|.++........|+..+....+|..+.+-... + -+.|+|.. .+...++++.+ |+.
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~-----~----~~~v~~~~~~~~~~~i~~~i~~~-G~~ 69 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAE-----G----TVEVTIDSSVVTLKDIVAVIEDQ-GYD 69 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT-----T----EEEEEEETTTSCHHHHHHHHHHT-TCE
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecC-----C----EEEEEECCCCCCHHHHHHHHHHc-CCC
Confidence 458888887665667788999998889888776443 2 57788863 34445555443 543
No 231
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=20.68 E-value=2e+02 Score=21.65 Aligned_cols=36 Identities=19% Similarity=0.039 Sum_probs=20.0
Q ss_pred CCCeEEEEEeeCCCccCCCccceEEEEE-eCCHHHHHHHHHHHc
Q 025677 173 FVGYKEVRLVIKESKLRGGDPLILCFVD-FENPACAATALSALQ 215 (249)
Q Consensus 173 fG~i~~v~l~~~~~~~~~G~~kg~aFVe-F~~~~~A~~Al~~Ln 215 (249)
+-.|.+|++..+-.. .-.||. |-+.++.+.++++|+
T Consensus 43 ~vtVt~V~vS~Dl~~-------AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDFSA-------CRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTSCC-------EEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCcE-------EEEEEEecCChhhHHHHHHHHH
Confidence 457888888766421 145555 545554444444443
Done!