Query 025678
Match_columns 249
No_of_seqs 221 out of 667
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 08:21:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4005 Transcription factor X 99.4 1.9E-12 4.1E-17 117.3 8.7 67 178-244 53-119 (292)
2 smart00338 BRLZ basic region l 99.2 1.1E-10 2.3E-15 85.1 7.5 48 192-239 3-50 (65)
3 KOG4343 bZIP transcription fac 99.0 3.5E-10 7.7E-15 111.7 7.5 52 188-239 275-326 (655)
4 PF00170 bZIP_1: bZIP transcri 99.0 9.3E-10 2E-14 80.1 7.3 48 192-239 3-50 (64)
5 KOG3584 cAMP response element 99.0 4.9E-10 1.1E-14 104.1 6.9 57 188-244 285-342 (348)
6 PF07716 bZIP_2: Basic region 99.0 1.5E-09 3.1E-14 77.0 7.7 49 191-240 2-50 (54)
7 KOG0709 CREB/ATF family transc 98.7 9.8E-09 2.1E-13 100.1 5.1 52 188-239 245-296 (472)
8 PF03131 bZIP_Maf: bZIP Maf tr 97.8 2E-06 4.3E-11 67.1 -1.5 51 187-237 23-73 (92)
9 KOG0837 Transcriptional activa 96.9 0.0033 7.2E-08 58.3 7.2 47 191-237 202-249 (279)
10 KOG4571 Activating transcripti 96.7 0.0051 1.1E-07 57.7 7.3 53 191-243 223-277 (294)
11 KOG3119 Basic region leucine z 96.4 0.0092 2E-07 54.9 7.0 54 186-239 186-239 (269)
12 KOG3863 bZIP transcription fac 96.4 0.0033 7.2E-08 63.9 4.1 50 196-245 492-542 (604)
13 KOG4196 bZIP transcription fac 96.3 0.024 5.2E-07 47.8 8.1 52 187-238 46-97 (135)
14 KOG1414 Transcriptional activa 84.9 0.12 2.6E-06 50.0 -2.5 51 185-235 276-326 (395)
15 PF01166 TSC22: TSC-22/dip/bun 81.1 2.8 6.1E-05 31.0 4.0 23 215-237 21-43 (59)
16 PHA03162 hypothetical protein; 77.2 1.5 3.3E-05 37.2 1.8 27 212-238 10-36 (135)
17 KOG1414 Transcriptional activa 75.5 0.1 2.2E-06 50.4 -6.4 48 189-236 149-200 (395)
18 PHA03155 hypothetical protein; 72.8 4.6 9.9E-05 33.6 3.5 24 215-238 8-31 (115)
19 PRK00888 ftsB cell division pr 70.5 13 0.00029 29.8 5.7 29 211-239 30-58 (105)
20 PF01166 TSC22: TSC-22/dip/bun 67.4 13 0.00027 27.7 4.4 29 216-244 15-43 (59)
21 PF04977 DivIC: Septum formati 66.9 19 0.0004 26.0 5.4 28 212-239 21-48 (80)
22 KOG1318 Helix loop helix trans 60.0 31 0.00067 34.3 7.0 58 186-244 235-320 (411)
23 PF12808 Mto2_bdg: Micro-tubul 59.8 22 0.00047 25.7 4.4 24 219-242 26-49 (52)
24 KOG4797 Transcriptional regula 59.4 20 0.00043 29.9 4.7 25 213-237 72-96 (123)
25 KOG3119 Basic region leucine z 58.5 49 0.0011 30.6 7.7 43 201-243 208-251 (269)
26 PF06156 DUF972: Protein of un 58.2 20 0.00043 29.1 4.5 25 215-239 22-46 (107)
27 PRK13169 DNA replication intia 55.2 24 0.00052 28.9 4.6 24 216-239 23-46 (110)
28 PF07558 Shugoshin_N: Shugoshi 54.6 13 0.00029 25.7 2.6 41 197-238 4-44 (46)
29 KOG4797 Transcriptional regula 51.9 32 0.00069 28.7 4.7 31 215-245 67-97 (123)
30 TIGR02209 ftsL_broad cell divi 51.8 58 0.0012 24.1 5.9 28 212-239 28-55 (85)
31 PF08172 CASP_C: CASP C termin 51.3 29 0.00064 31.9 5.0 28 214-241 106-133 (248)
32 cd07429 Cby_like Chibby, a nuc 50.6 29 0.00064 28.5 4.4 22 223-244 80-102 (108)
33 PF12709 Kinetocho_Slk19: Cent 50.4 44 0.00096 26.5 5.2 26 214-239 48-73 (87)
34 PF13863 DUF4200: Domain of un 49.8 1.3E+02 0.0028 23.8 8.0 47 192-238 58-104 (126)
35 KOG4005 Transcription factor X 49.0 91 0.002 29.4 7.7 54 186-239 65-121 (292)
36 PRK09413 IS2 repressor TnpA; R 48.8 35 0.00075 27.4 4.6 28 215-242 78-105 (121)
37 PF14645 Chibby: Chibby family 48.5 27 0.00059 28.7 3.9 25 220-244 76-101 (116)
38 PF01486 K-box: K-box region; 47.3 54 0.0012 25.4 5.3 33 206-238 62-98 (100)
39 KOG1103 Predicted coiled-coil 47.1 52 0.0011 32.8 6.1 52 187-241 107-158 (561)
40 PRK09413 IS2 repressor TnpA; R 46.7 34 0.00074 27.4 4.2 26 217-242 73-98 (121)
41 PF03980 Nnf1: Nnf1 ; InterPr 46.0 46 0.001 26.1 4.8 27 213-239 78-104 (109)
42 PF07926 TPR_MLP1_2: TPR/MLP1/ 43.0 1.8E+02 0.004 23.7 8.1 46 195-240 85-130 (132)
43 PF06005 DUF904: Protein of un 42.2 56 0.0012 24.7 4.5 16 222-237 39-54 (72)
44 KOG2829 E2F-like protein [Tran 41.6 69 0.0015 30.9 5.9 34 188-229 134-167 (326)
45 PF06305 DUF1049: Protein of u 41.2 39 0.00084 24.0 3.4 12 223-234 56-67 (68)
46 PF07716 bZIP_2: Basic region 40.5 1.2E+02 0.0027 21.0 8.0 45 193-237 7-54 (54)
47 PF14197 Cep57_CLD_2: Centroso 40.5 1E+02 0.0022 23.1 5.6 40 196-235 28-67 (69)
48 PF14077 WD40_alt: Alternative 40.4 24 0.00052 25.1 2.1 21 214-234 17-37 (48)
49 PF06698 DUF1192: Protein of u 39.9 52 0.0011 24.3 3.9 22 217-238 23-44 (59)
50 KOG0288 WD40 repeat protein Ti 37.9 1.2E+02 0.0026 30.6 7.1 24 214-237 47-70 (459)
51 PF10224 DUF2205: Predicted co 37.6 76 0.0017 24.7 4.7 29 214-242 29-57 (80)
52 PRK13169 DNA replication intia 37.5 62 0.0013 26.5 4.3 28 212-239 26-53 (110)
53 PF08781 DP: Transcription fac 36.5 1.8E+02 0.004 24.9 7.2 28 210-237 17-47 (142)
54 COG5562 Phage envelope protein 36.4 17 0.00036 31.2 0.9 18 126-143 86-106 (137)
55 PRK10884 SH3 domain-containing 36.3 2.5E+02 0.0055 25.1 8.4 19 219-237 129-147 (206)
56 PF13851 GAS: Growth-arrest sp 35.6 2.4E+02 0.0051 25.0 8.1 44 194-237 72-115 (201)
57 PF02183 HALZ: Homeobox associ 34.3 1.2E+02 0.0026 21.0 4.8 26 218-243 15-41 (45)
58 COG5509 Uncharacterized small 34.2 62 0.0013 24.4 3.5 23 216-238 26-48 (65)
59 PF05377 FlaC_arch: Flagella a 33.8 58 0.0012 23.8 3.2 20 219-238 11-30 (55)
60 PF07047 OPA3: Optic atrophy 3 33.8 85 0.0018 26.0 4.7 39 192-236 95-133 (134)
61 PF06785 UPF0242: Uncharacteri 33.7 61 0.0013 31.9 4.3 25 211-235 197-221 (401)
62 PF04999 FtsL: Cell division p 33.2 1.5E+02 0.0032 22.7 5.7 25 215-239 42-66 (97)
63 PF06156 DUF972: Protein of un 31.8 76 0.0016 25.7 4.0 25 213-237 27-51 (107)
64 TIGR03752 conj_TIGR03752 integ 31.1 65 0.0014 32.7 4.2 20 217-236 75-94 (472)
65 PF12709 Kinetocho_Slk19: Cent 31.0 1.2E+02 0.0025 24.2 4.8 32 213-244 40-72 (87)
66 PF05103 DivIVA: DivIVA protei 30.9 90 0.002 24.6 4.3 24 215-238 25-48 (131)
67 PF10224 DUF2205: Predicted co 30.2 2.6E+02 0.0057 21.7 7.8 44 196-239 18-61 (80)
68 PF02370 M: M protein repeat; 29.6 1.3E+02 0.0027 18.1 3.6 17 218-234 4-20 (21)
69 PRK13922 rod shape-determining 29.4 2.8E+02 0.0061 25.0 7.7 12 226-237 97-108 (276)
70 PRK13922 rod shape-determining 29.3 1.7E+02 0.0037 26.4 6.3 46 200-245 61-110 (276)
71 PRK06569 F0F1 ATP synthase sub 28.9 3.7E+02 0.0079 23.3 7.9 50 188-237 35-84 (155)
72 PF10883 DUF2681: Protein of u 28.4 1.1E+02 0.0023 24.3 4.2 14 224-237 32-45 (87)
73 PF08563 P53_TAD: P53 transact 28.3 36 0.00078 21.3 1.2 17 89-105 6-22 (25)
74 PF11559 ADIP: Afadin- and alp 28.2 3.4E+02 0.0073 22.3 7.5 44 195-238 46-89 (151)
75 KOG3650 Predicted coiled-coil 28.0 82 0.0018 26.0 3.6 29 213-241 68-96 (120)
76 KOG4661 Hsp27-ERE-TATA-binding 27.9 2.5E+02 0.0053 29.9 7.7 18 220-237 651-668 (940)
77 KOG0561 bHLH transcription fac 27.3 46 0.001 32.3 2.3 27 212-238 102-128 (373)
78 KOG4571 Activating transcripti 27.2 5.7E+02 0.012 24.6 9.7 51 189-239 226-279 (294)
79 PF10226 DUF2216: Uncharacteri 26.8 4.8E+02 0.01 23.7 8.4 55 192-246 21-79 (195)
80 TIGR02449 conserved hypothetic 26.7 1.3E+02 0.0028 22.6 4.1 13 225-237 31-43 (65)
81 TIGR02894 DNA_bind_RsfA transc 26.7 2.1E+02 0.0046 25.1 6.1 26 212-237 108-133 (161)
82 PRK14474 F0F1 ATP synthase sub 26.5 3.7E+02 0.008 24.5 8.0 48 188-235 30-77 (250)
83 PF12999 PRKCSH-like: Glucosid 25.9 4.7E+02 0.01 23.2 8.5 31 209-239 140-170 (176)
84 PF05266 DUF724: Protein of un 25.8 3.3E+02 0.0071 24.1 7.3 30 210-239 126-155 (190)
85 KOG0709 CREB/ATF family transc 25.7 1.7E+02 0.0036 29.8 5.9 59 186-244 247-316 (472)
86 KOG4343 bZIP transcription fac 25.7 93 0.002 32.4 4.2 53 188-240 279-334 (655)
87 PRK13454 F0F1 ATP synthase sub 25.7 4.3E+02 0.0094 22.7 7.9 47 188-234 56-102 (181)
88 CHL00118 atpG ATP synthase CF0 25.6 4E+02 0.0086 22.2 7.9 45 190-234 49-93 (156)
89 PRK09174 F0F1 ATP synthase sub 25.2 4.3E+02 0.0093 23.4 8.0 47 188-234 78-124 (204)
90 cd08531 SAM_PNT-ERG_FLI-1 Ster 25.2 34 0.00074 26.1 0.9 17 125-141 41-57 (75)
91 TIGR00993 3a0901s04IAP86 chlor 25.1 1.4E+02 0.003 32.1 5.5 44 198-241 414-459 (763)
92 PF07047 OPA3: Optic atrophy 3 24.8 1.8E+02 0.0038 24.1 5.1 29 211-239 101-129 (134)
93 smart00243 GAS2 Growth-Arrest- 24.7 35 0.00076 26.3 0.8 12 127-138 55-66 (73)
94 PF12808 Mto2_bdg: Micro-tubul 24.2 1.7E+02 0.0037 21.1 4.2 41 196-236 10-50 (52)
95 PRK00888 ftsB cell division pr 24.0 1.5E+02 0.0032 23.7 4.4 19 211-229 44-62 (105)
96 PRK05759 F0F1 ATP synthase sub 23.8 4E+02 0.0088 21.7 8.0 50 188-237 29-78 (156)
97 cd08533 SAM_PNT-ETS-1,2 Steril 23.7 36 0.00078 25.7 0.7 15 126-140 40-54 (71)
98 KOG0163 Myosin class VI heavy 23.5 2.8E+02 0.006 30.6 7.2 28 203-230 964-992 (1259)
99 smart00251 SAM_PNT SAM / Point 23.4 38 0.00082 26.0 0.8 54 86-139 10-66 (82)
100 PRK14471 F0F1 ATP synthase sub 23.4 4.4E+02 0.0095 22.0 8.0 47 188-234 33-79 (164)
101 PF04568 IATP: Mitochondrial A 22.2 4.2E+02 0.0092 21.4 6.9 8 203-210 57-64 (100)
102 cd08540 SAM_PNT-ERG Sterile al 21.9 43 0.00093 25.6 0.8 17 126-142 42-58 (75)
103 COG1792 MreC Cell shape-determ 21.5 1.4E+02 0.0031 27.8 4.4 24 215-238 83-106 (284)
104 KOG3335 Predicted coiled-coil 21.4 3.3E+02 0.0073 24.4 6.4 23 213-235 111-133 (181)
105 cd08203 SAM_PNT Sterile alpha 21.3 44 0.00096 24.5 0.8 16 125-140 37-52 (66)
106 PRK13453 F0F1 ATP synthase sub 21.3 5.1E+02 0.011 22.0 8.0 46 190-235 45-90 (173)
107 COG3879 Uncharacterized protei 21.2 4.9E+02 0.011 24.4 7.7 44 198-241 54-101 (247)
108 KOG1962 B-cell receptor-associ 21.0 3.3E+02 0.0072 24.9 6.5 46 195-240 166-211 (216)
109 PRK07352 F0F1 ATP synthase sub 20.6 5.2E+02 0.011 21.8 8.0 48 188-235 44-91 (174)
110 PRK14472 F0F1 ATP synthase sub 20.4 5.3E+02 0.011 21.8 8.0 47 188-234 43-89 (175)
111 cd08534 SAM_PNT-GABP-alpha Ste 20.4 71 0.0015 25.2 1.8 56 85-140 11-69 (89)
112 PF05377 FlaC_arch: Flagella a 20.3 2.1E+02 0.0045 20.9 4.1 23 217-239 2-24 (55)
113 PF14775 NYD-SP28_assoc: Sperm 20.3 1.3E+02 0.0027 22.0 3.0 17 220-236 38-54 (60)
114 cd08542 SAM_PNT-ETS-1 Sterile 20.2 89 0.0019 24.7 2.3 56 85-140 11-69 (88)
115 cd08757 SAM_PNT_ESE Sterile al 20.1 49 0.0011 24.5 0.8 16 125-140 39-54 (68)
No 1
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.36 E-value=1.9e-12 Score=117.34 Aligned_cols=67 Identities=34% Similarity=0.426 Sum_probs=62.7
Q ss_pred CcCCCCCcchhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025678 178 TPRRKRDDNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKEASTIF 244 (249)
Q Consensus 178 ~~~rkR~~~~~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~e~~~~~ 244 (249)
.+.|||.+.+|...+||.+||++|||.+|+.+|.|||+++.++|.++..|.+||+.|+.|++..+-.
T Consensus 53 ~~~rKr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 53 QPKRKRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAI 119 (292)
T ss_pred chHHHHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999999999999999999999999999999998866543
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=99.17 E-value=1.1e-10 Score=85.14 Aligned_cols=48 Identities=56% Similarity=0.665 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 192 IERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 192 ~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
++|+.+|+++||+||++||.||++|+.+||.+|..|+.+|..|+.+.+
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~ 50 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIE 50 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999998854
No 3
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.05 E-value=3.5e-10 Score=111.69 Aligned_cols=52 Identities=40% Similarity=0.519 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 188 ~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
.|..+-||+.|||||||||+.||+|||+|+..||.++..|..||+.|++||.
T Consensus 275 ~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENa 326 (655)
T KOG4343|consen 275 SDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENA 326 (655)
T ss_pred cCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4566788889999999999999999999999999999999999999999976
No 4
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.03 E-value=9.3e-10 Score=80.05 Aligned_cols=48 Identities=54% Similarity=0.702 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 192 IERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 192 ~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
..++.+|+++||+||+++|.||++|+.+||.+|..|+.+|..|+.++.
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~ 50 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELE 50 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999998854
No 5
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.02 E-value=4.9e-10 Score=104.09 Aligned_cols=57 Identities=33% Similarity=0.475 Sum_probs=50.0
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhh
Q 025678 188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE-KEASTIF 244 (249)
Q Consensus 188 ~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e-~e~~~~~ 244 (249)
.|+...||+-|++||||+|+.+|+|||+|+++||.+|+.||.+|..|-.| +.|..+.
T Consensus 285 aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLY 342 (348)
T KOG3584|consen 285 AEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELY 342 (348)
T ss_pred chhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHh
Confidence 45667888999999999999999999999999999999999999999888 4454443
No 6
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.02 E-value=1.5e-09 Score=76.98 Aligned_cols=49 Identities=47% Similarity=0.628 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 191 SIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKEA 240 (249)
Q Consensus 191 ~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~e~ 240 (249)
.++++.||. +||+||++||.||++|+.+||.+|..|+.+|..|+.+++.
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQ 50 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888 9999999999999999999999999999999999998663
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.74 E-value=9.8e-09 Score=100.09 Aligned_cols=52 Identities=44% Similarity=0.623 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 188 ~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
.|+.+-||.||||+|++|||.||+|||+|++.||.+|....+||++|+++.+
T Consensus 245 aEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~ 296 (472)
T KOG0709|consen 245 AEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVE 296 (472)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHH
Confidence 3455677889999999999999999999999999999999999999999854
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=97.83 E-value=2e-06 Score=67.06 Aligned_cols=51 Identities=29% Similarity=0.362 Sum_probs=41.7
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 187 AFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 187 ~~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e 237 (249)
..+...-|..||.+|||.+|+.||.||..++.+||.++..|..+...|..+
T Consensus 23 ~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e 73 (92)
T PF03131_consen 23 EEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQE 73 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455688899999999999999999999999999988877665555544
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=96.86 E-value=0.0033 Score=58.29 Aligned_cols=47 Identities=34% Similarity=0.439 Sum_probs=39.0
Q ss_pred HHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 191 SIERRLRR-KIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 191 ~~err~rR-~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e 237 (249)
.+..|..| .++||++|.+||+||-.+|..||.+|..|..+|..|-.+
T Consensus 202 qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~ 249 (279)
T KOG0837|consen 202 QEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASE 249 (279)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Confidence 33444444 689999999999999999999999999999988876555
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=96.70 E-value=0.0051 Score=57.70 Aligned_cols=53 Identities=32% Similarity=0.498 Sum_probs=43.3
Q ss_pred HHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhh
Q 025678 191 SIERRLRR-KIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE-KEASTI 243 (249)
Q Consensus 191 ~~err~rR-~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e-~e~~~~ 243 (249)
..+++.|| .++|..+|.|=|+||++-.+.|+-+...|+.+|++|+.+ .++++-
T Consensus 223 ~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerE 277 (294)
T KOG4571|consen 223 TPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELERE 277 (294)
T ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555 557777899999999999999999999999999999988 456554
No 11
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.42 E-value=0.0092 Score=54.94 Aligned_cols=54 Identities=28% Similarity=0.437 Sum_probs=44.5
Q ss_pred chhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 186 NAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 186 ~~~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
...++.+.+-..|.-+|=++|+|||.+.|...+++..+|..|+.||+.|+.+.+
T Consensus 186 ~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~ 239 (269)
T KOG3119|consen 186 SPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVE 239 (269)
T ss_pred CchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455566788999999999999999999999999999999999965
No 12
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.37 E-value=0.0033 Score=63.86 Aligned_cols=50 Identities=30% Similarity=0.385 Sum_probs=44.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhh
Q 025678 196 LRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE-KEASTIFL 245 (249)
Q Consensus 196 ~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e-~e~~~~~~ 245 (249)
.||.=|||.||+++|+||-.-|..||.+|..|+.|-++|.+| .++++.|+
T Consensus 492 IRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~ 542 (604)
T KOG3863|consen 492 IRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLG 542 (604)
T ss_pred cccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999999999999999998888 56776654
No 13
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=96.29 E-value=0.024 Score=47.82 Aligned_cols=52 Identities=29% Similarity=0.335 Sum_probs=38.6
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 187 AFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEK 238 (249)
Q Consensus 187 ~~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~ 238 (249)
-.|.+--|..||-+|||==|+-+|.|.-..-.+||.+...|..+.++|+.++
T Consensus 46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~ 97 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEEN 97 (135)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667789999999999999999999999976555555555555443
No 14
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=84.91 E-value=0.12 Score=49.96 Aligned_cols=51 Identities=33% Similarity=0.347 Sum_probs=44.5
Q ss_pred cchhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 185 DNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLK 235 (249)
Q Consensus 185 ~~~~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~ 235 (249)
....+..+++++|=.++||.+|-++|.|||-.+..|+.+...+..+|..|.
T Consensus 276 ~~~~~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 276 RTVDEDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred cccCCCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 355666788885558899999999999999999999999999999998888
No 15
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=81.13 E-value=2.8 Score=31.04 Aligned_cols=23 Identities=43% Similarity=0.421 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025678 215 AYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~e 237 (249)
..|.+|+.++..|+.||..|+..
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556666666666666666543
No 16
>PHA03162 hypothetical protein; Provisional
Probab=77.16 E-value=1.5 Score=37.18 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 212 RKQAYHNELVSKVSRLEEENLKLKKEK 238 (249)
Q Consensus 212 RKkay~~eLE~~v~~L~~EN~~L~~e~ 238 (249)
+++.-+++|++++.+|+.||..|+++.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778999999999999999999984
No 17
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=75.48 E-value=0.1 Score=50.42 Aligned_cols=48 Identities=31% Similarity=0.351 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 025678 189 EKSIERRLRRKIKNRESAAR---SRARKQAYHNELVSKVSRLE-EENLKLKK 236 (249)
Q Consensus 189 e~~~err~rR~ikNReSA~r---SR~RKkay~~eLE~~v~~L~-~EN~~L~~ 236 (249)
-..+.|+..|+.+|+.+|++ +|.|++.++.+|..+|..|+ .+|..|..
T Consensus 149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~ 200 (395)
T KOG1414|consen 149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSP 200 (395)
T ss_pred CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCc
Confidence 34588999999999999999 99999999999999999999 55554433
No 18
>PHA03155 hypothetical protein; Provisional
Probab=72.77 E-value=4.6 Score=33.56 Aligned_cols=24 Identities=38% Similarity=0.378 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 215 AYHNELVSKVSRLEEENLKLKKEK 238 (249)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~e~ 238 (249)
.-+++|+.++.+|+-||..|+++.
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl 31 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKL 31 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999873
No 19
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=70.54 E-value=13 Score=29.76 Aligned_cols=29 Identities=17% Similarity=0.071 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 211 ARKQAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 211 ~RKkay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
...++.+.+++.++..|+.+|..|+.+.+
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777788888888777744
No 20
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=67.45 E-value=13 Score=27.66 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025678 216 YHNELVSKVSRLEEENLKLKKEKEASTIF 244 (249)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~e~e~~~~~ 244 (249)
.++.|-.+++.|++.|.+|+.||.+.+-.
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36778899999999999999999977654
No 21
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=66.87 E-value=19 Score=26.04 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 212 RKQAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 212 RKkay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
..++.+.+|+.+++.|+.+|..|+.+.+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888888888888888888754
No 22
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=60.03 E-value=31 Score=34.28 Aligned_cols=58 Identities=26% Similarity=0.312 Sum_probs=37.0
Q ss_pred chhhhHHHHHHHHHHHhHHH-----------------------HH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 186 NAFEKSIERRLRRKIKNRES-----------------------AA--RSR--ARKQAYHNELVSKVSRLEEENLKLKKEK 238 (249)
Q Consensus 186 ~~~e~~~err~rR~ikNReS-----------------------A~--rSR--~RKkay~~eLE~~v~~L~~EN~~L~~e~ 238 (249)
+.| ..+|||+|-.|.+|.- |. .-| +++.+.+.|++.+-+.|+..|++|..++
T Consensus 235 d~H-NeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~~ri 313 (411)
T KOG1318|consen 235 DNH-NEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELALRI 313 (411)
T ss_pred hhh-hHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHH
Confidence 444 4588888888888742 21 111 2334556777777888888888888874
Q ss_pred H-Hhhhh
Q 025678 239 E-ASTIF 244 (249)
Q Consensus 239 e-~~~~~ 244 (249)
+ |+.+.
T Consensus 314 eeLk~~~ 320 (411)
T KOG1318|consen 314 EELKSEA 320 (411)
T ss_pred HHHHHHH
Confidence 4 65543
No 23
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=59.84 E-value=22 Score=25.67 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 025678 219 ELVSKVSRLEEENLKLKKEKEAST 242 (249)
Q Consensus 219 eLE~~v~~L~~EN~~L~~e~e~~~ 242 (249)
....++..|+.||..|+.+.++++
T Consensus 26 ~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 26 AARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677788888888888866554
No 24
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=59.38 E-value=20 Score=29.89 Aligned_cols=25 Identities=36% Similarity=0.262 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 213 KQAYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 213 Kkay~~eLE~~v~~L~~EN~~L~~e 237 (249)
=+..+.+||.+++.|+.||.-|+.-
T Consensus 72 Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 72 LKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3556677777777777777666654
No 25
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=58.51 E-value=49 Score=30.62 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=28.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhh
Q 025678 201 KNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKE-ASTI 243 (249)
Q Consensus 201 kNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~e-~~~~ 243 (249)
|-|.+++.--..-+.++.+||.+...|+.++++|+++.. +..+
T Consensus 208 kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 208 KSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443344566778899988888888888888854 4333
No 26
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=58.18 E-value=20 Score=29.08 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 215 AYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
+.+.+|...+..|.+||.+|+.||+
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~ 46 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENE 46 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777777777777765
No 27
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=55.25 E-value=24 Score=28.91 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 216 YHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
.+.+|...|..|.+||..|+.||+
T Consensus 23 el~~LK~~~~el~EEN~~L~iEN~ 46 (110)
T PRK13169 23 ELGALKKQLAELLEENTALRLEND 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544
No 28
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=54.61 E-value=13 Score=25.72 Aligned_cols=41 Identities=34% Similarity=0.368 Sum_probs=13.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 197 RRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEK 238 (249)
Q Consensus 197 rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~ 238 (249)
++...|++=|+..-.. ...+.+||.++..|..||..|+.+.
T Consensus 4 k~~~qn~~laK~Ns~l-~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 4 KYSRQNRELAKRNSAL-SIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhHHH-HhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 4455555544433222 3568899999999999999998763
No 29
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=51.94 E-value=32 Score=28.70 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 025678 215 AYHNELVSKVSRLEEENLKLKKEKEASTIFL 245 (249)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~e~e~~~~~~ 245 (249)
+.++-|..++..|++.|..|++||.|.+-+-
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4678888999999999999999999887653
No 30
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=51.79 E-value=58 Score=24.08 Aligned_cols=28 Identities=18% Similarity=0.187 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 212 RKQAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 212 RKkay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
.....+..++.++..++.||.+|+.|..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677788888888888888887743
No 31
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=51.33 E-value=29 Score=31.92 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025678 214 QAYHNELVSKVSRLEEENLKLKKEKEAS 241 (249)
Q Consensus 214 kay~~eLE~~v~~L~~EN~~L~~e~e~~ 241 (249)
+.-+..|..+|+.|+..|.+|-.+....
T Consensus 106 ~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 106 QQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888887775543
No 32
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=50.64 E-value=29 Score=28.46 Aligned_cols=22 Identities=41% Similarity=0.383 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHH-Hhhhh
Q 025678 223 KVSRLEEENLKLKKEKE-ASTIF 244 (249)
Q Consensus 223 ~v~~L~~EN~~L~~e~e-~~~~~ 244 (249)
+..+|++||.-|+-++| |..+|
T Consensus 80 k~~~LeEENNlLklKievLLDML 102 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVLLDML 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44589999999999987 55555
No 33
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=50.44 E-value=44 Score=26.51 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 214 QAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 214 kay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
...+.+|+.++..|..||+.|+.+.+
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777666543
No 34
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=49.79 E-value=1.3e+02 Score=23.78 Aligned_cols=47 Identities=23% Similarity=0.279 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 192 IERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEK 238 (249)
Q Consensus 192 ~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~ 238 (249)
.+.+..|-++.-+.+.+.+..|.+-+..|..++..|..++..|....
T Consensus 58 n~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 58 NEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKL 104 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677777788888888888888888888888877763
No 35
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=49.02 E-value=91 Score=29.40 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=36.6
Q ss_pred chhhhHHHHHHHHHH--HhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 025678 186 NAFEKSIERRLRRKI--KNRESAARSRARKQAY-HNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 186 ~~~e~~~err~rR~i--kNReSA~rSR~RKkay-~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
...||...|++|-.+ .|=.--+..|.-+-+| +.+|+.+-..|..||+.|+++++
T Consensus 65 S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~ 121 (292)
T KOG4005|consen 65 SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINE 121 (292)
T ss_pred CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777333 2222233445555554 68999999999999999998865
No 36
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=48.83 E-value=35 Score=27.40 Aligned_cols=28 Identities=25% Similarity=0.143 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025678 215 AYHNELVSKVSRLEEENLKLKKEKEAST 242 (249)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~e~e~~~ 242 (249)
+.+.+|+.++.+|+.||.-|++..++.+
T Consensus 78 ~ei~~L~~el~~L~~E~diLKKa~~~~~ 105 (121)
T PRK09413 78 KQIKELQRLLGKKTMENELLKEAVEYGR 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456777778888888877777766543
No 37
>PF14645 Chibby: Chibby family
Probab=48.46 E-value=27 Score=28.67 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-Hhhhh
Q 025678 220 LVSKVSRLEEENLKLKKEKE-ASTIF 244 (249)
Q Consensus 220 LE~~v~~L~~EN~~L~~e~e-~~~~~ 244 (249)
|..+..+|++||..|+.+++ |..+|
T Consensus 76 l~~~n~~L~EENN~Lklk~elLlDML 101 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELLLDML 101 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556688899999998887 44454
No 38
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=47.30 E-value=54 Score=25.44 Aligned_cols=33 Identities=39% Similarity=0.462 Sum_probs=24.8
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 206 AARSRARKQ----AYHNELVSKVSRLEEENLKLKKEK 238 (249)
Q Consensus 206 A~rSR~RKk----ay~~eLE~~v~~L~~EN~~L~~e~ 238 (249)
-.+-|.||. ..+..|..++..|.++|..|+.+.
T Consensus 62 L~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 62 LKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455553 567788899999999999998874
No 39
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=47.08 E-value=52 Score=32.75 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=36.9
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025678 187 AFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKEAS 241 (249)
Q Consensus 187 ~~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~e~~ 241 (249)
...-..|+|+|.+|+.-|.- |.++..|..+-..-+..|++|-++|..+.|++
T Consensus 107 s~LaAaE~khrKli~dLE~d---Re~haqdaaeGDDlt~~LEKEReqL~QQiEFe 158 (561)
T KOG1103|consen 107 SLLAAAEKKHRKLIKDLEAD---REAHAQDAAEGDDLTAHLEKEREQLQQQIEFE 158 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHhhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888876653 55666777777777778888888887776654
No 40
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=46.75 E-value=34 Score=27.45 Aligned_cols=26 Identities=15% Similarity=0.052 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025678 217 HNELVSKVSRLEEENLKLKKEKEAST 242 (249)
Q Consensus 217 ~~eLE~~v~~L~~EN~~L~~e~e~~~ 242 (249)
+.+++.++..|+.++.+|+.|+++.+
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLK 98 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLK 98 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577778888888888888877544
No 41
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=46.01 E-value=46 Score=26.13 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 213 KQAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 213 Kkay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
|+.++..|...+..++.+|..|..+.+
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~ 104 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQ 104 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999998854
No 42
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=42.99 E-value=1.8e+02 Score=23.69 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=34.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 195 RLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKEA 240 (249)
Q Consensus 195 r~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~e~ 240 (249)
....+..++.|+..-+..=..-+.+++.++..|..+|.-|..+.+.
T Consensus 85 a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 85 AKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566677777777777777888888888888888888887653
No 43
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=42.20 E-value=56 Score=24.73 Aligned_cols=16 Identities=44% Similarity=0.563 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 025678 222 SKVSRLEEENLKLKKE 237 (249)
Q Consensus 222 ~~v~~L~~EN~~L~~e 237 (249)
.+...|+.+|++|+.+
T Consensus 39 ~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 39 EENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455555555544
No 44
>KOG2829 consensus E2F-like protein [Transcription]
Probab=41.59 E-value=69 Score=30.87 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEE 229 (249)
Q Consensus 188 ~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~ 229 (249)
.++.++.|.|||.+ -++|++|++||..++..++.
T Consensus 134 v~~le~Er~k~~er--------I~kK~a~lqEl~~q~~~fkn 167 (326)
T KOG2829|consen 134 VSELEEERKKRMER--------IKKKAAQLQELIEQVSAFKN 167 (326)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555532 36788999999999877654
No 45
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=41.20 E-value=39 Score=23.99 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 025678 223 KVSRLEEENLKL 234 (249)
Q Consensus 223 ~v~~L~~EN~~L 234 (249)
+++++++|+++|
T Consensus 56 ~l~~le~e~~~l 67 (68)
T PF06305_consen 56 ELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHhc
Confidence 444444444443
No 46
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=40.53 E-value=1.2e+02 Score=20.98 Aligned_cols=45 Identities=31% Similarity=0.423 Sum_probs=30.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 193 ERRLRRKIKNRESAARSRARK---QAYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 193 err~rR~ikNReSA~rSR~RK---kay~~eLE~~v~~L~~EN~~L~~e 237 (249)
.||.+=-+.-+.+-++-+.+. ...+..|+.+...|..++..|+.|
T Consensus 7 ~rR~rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 7 ERRERNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334343333344444444443 567889999999999999999875
No 47
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=40.51 E-value=1e+02 Score=23.10 Aligned_cols=40 Identities=25% Similarity=0.270 Sum_probs=23.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 196 LRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLK 235 (249)
Q Consensus 196 ~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~ 235 (249)
.+++.+-|.+|.++=.-+-..+.+|-.++..|+.|+..++
T Consensus 28 ~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 28 NKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556666666666555556666666666666655443
No 48
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=40.41 E-value=24 Score=25.13 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025678 214 QAYHNELVSKVSRLEEENLKL 234 (249)
Q Consensus 214 kay~~eLE~~v~~L~~EN~~L 234 (249)
+.++.|||.+|..|++-|..|
T Consensus 17 ~vrv~eLEeEV~~LrKINrdL 37 (48)
T PF14077_consen 17 RVRVSELEEEVRTLRKINRDL 37 (48)
T ss_pred eeeHHHHHHHHHHHHHHhHHH
Confidence 345677888887777777665
No 49
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=39.94 E-value=52 Score=24.26 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025678 217 HNELVSKVSRLEEENLKLKKEK 238 (249)
Q Consensus 217 ~~eLE~~v~~L~~EN~~L~~e~ 238 (249)
+.||+..++.|+.|..+++.+.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAI 44 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777776654
No 50
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=37.95 E-value=1.2e+02 Score=30.58 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 214 QAYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 214 kay~~eLE~~v~~L~~EN~~L~~e 237 (249)
++.+.+.|.++..|++||..|..+
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999988766
No 51
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=37.55 E-value=76 Score=24.67 Aligned_cols=29 Identities=34% Similarity=0.382 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025678 214 QAYHNELVSKVSRLEEENLKLKKEKEAST 242 (249)
Q Consensus 214 kay~~eLE~~v~~L~~EN~~L~~e~e~~~ 242 (249)
|.-+..|-.+|..-++||.+|..+|++..
T Consensus 29 Q~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq 57 (80)
T PF10224_consen 29 QDSLEALSDRVEEVKEENEKLESENEYLQ 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677788888888888888887544
No 52
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=37.49 E-value=62 Score=26.53 Aligned_cols=28 Identities=29% Similarity=0.264 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 212 RKQAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 212 RKkay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
.=|+++.+|..+-..|+.||..|++..+
T Consensus 26 ~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 26 ALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477899999999999999999998843
No 53
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=36.53 E-value=1.8e+02 Score=24.91 Aligned_cols=28 Identities=18% Similarity=0.250 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 025678 210 RARKQAYHNELVSKVSRL---EEENLKLKKE 237 (249)
Q Consensus 210 R~RKkay~~eLE~~v~~L---~~EN~~L~~e 237 (249)
-++|++|+.||..+...+ -..|..+...
T Consensus 17 I~~K~~~LqEL~~Q~va~knLv~RN~~~~~~ 47 (142)
T PF08781_consen 17 IKKKKEQLQELILQQVAFKNLVQRNRQLEQS 47 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 366999999999876554 4555555443
No 54
>COG5562 Phage envelope protein [General function prediction only]
Probab=36.36 E-value=17 Score=31.16 Aligned_cols=18 Identities=44% Similarity=0.767 Sum_probs=14.9
Q ss_pred ccchhhhHH---Hhhhhcccc
Q 025678 126 LGELTLEDF---LVQAGLFAE 143 (249)
Q Consensus 126 lgeMTLEDF---LvrAGvv~e 143 (249)
-|+.|+|+| |++|||++=
T Consensus 86 sGqttF~ef~~~la~AGVfrw 106 (137)
T COG5562 86 SGQTTFEEFCSALAEAGVFRW 106 (137)
T ss_pred cCCccHHHHHHHHHhCCeEEE
Confidence 367899999 789999873
No 55
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.27 E-value=2.5e+02 Score=25.14 Aligned_cols=19 Identities=42% Similarity=0.487 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025678 219 ELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 219 eLE~~v~~L~~EN~~L~~e 237 (249)
.++..+..|+++|++|+.+
T Consensus 129 ~~~~~~~~L~~~n~~L~~~ 147 (206)
T PRK10884 129 QSDSVINGLKEENQKLKNQ 147 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 56
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=35.59 E-value=2.4e+02 Score=24.99 Aligned_cols=44 Identities=27% Similarity=0.320 Sum_probs=33.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 194 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e 237 (249)
..+++.+++-++-..+=..-++.+..++.++..|+.|++.|...
T Consensus 72 ~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr 115 (201)
T PF13851_consen 72 EELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQR 115 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777877777777777788888888888888888877665
No 57
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=34.28 E-value=1.2e+02 Score=20.99 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hhhh
Q 025678 218 NELVSKVSRLEEENLKLKKEKE-ASTI 243 (249)
Q Consensus 218 ~eLE~~v~~L~~EN~~L~~e~e-~~~~ 243 (249)
+.|..+...|..||+.|+.+.. +...
T Consensus 15 d~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788888888888888888843 4433
No 58
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=34.21 E-value=62 Score=24.36 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025678 216 YHNELVSKVSRLEEENLKLKKEK 238 (249)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~e~ 238 (249)
-+.||+.+++-|+.|.++|+.|.
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~ 48 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAEL 48 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999998873
No 59
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=33.80 E-value=58 Score=23.82 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025678 219 ELVSKVSRLEEENLKLKKEK 238 (249)
Q Consensus 219 eLE~~v~~L~~EN~~L~~e~ 238 (249)
.++..+..++.||+.|+...
T Consensus 11 ~~~~~i~tvk~en~~i~~~v 30 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESV 30 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445566666776666663
No 60
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=33.77 E-value=85 Score=26.03 Aligned_cols=39 Identities=28% Similarity=0.253 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 192 IERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKK 236 (249)
Q Consensus 192 ~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~ 236 (249)
+-.|..|+.++|+.+ .++.+++|+.++..|+.+.++++.
T Consensus 95 E~~Rs~~ke~~Ke~~------~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 95 EYWRSARKEAKKEEE------LQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHHHhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555554443 345677888888888887776653
No 61
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=33.69 E-value=61 Score=31.88 Aligned_cols=25 Identities=40% Similarity=0.385 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 211 ARKQAYHNELVSKVSRLEEENLKLK 235 (249)
Q Consensus 211 ~RKkay~~eLE~~v~~L~~EN~~L~ 235 (249)
+++|+|+..||.+|.+|.-|...|.
T Consensus 197 ~kRQ~yI~~LEsKVqDLm~EirnLL 221 (401)
T PF06785_consen 197 DKRQAYIGKLESKVQDLMYEIRNLL 221 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999888776643
No 62
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=33.24 E-value=1.5e+02 Score=22.66 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 215 AYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
..++.++.+..+|+.||.+|+-|..
T Consensus 42 ~~l~~l~~~~~~l~~e~~~L~lE~~ 66 (97)
T PF04999_consen 42 YELQQLEKEIDQLQEENERLRLEIA 66 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888899999999999888853
No 63
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=31.84 E-value=76 Score=25.73 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 213 KQAYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 213 Kkay~~eLE~~v~~L~~EN~~L~~e 237 (249)
=|.++.+|..+-+.|+.||+.|+..
T Consensus 27 LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 27 LKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999999999999999988
No 64
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=31.12 E-value=65 Score=32.66 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025678 217 HNELVSKVSRLEEENLKLKK 236 (249)
Q Consensus 217 ~~eLE~~v~~L~~EN~~L~~ 236 (249)
+..|+.+-+.|.+||++|++
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 75 LAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666655
No 65
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=31.04 E-value=1.2e+02 Score=24.19 Aligned_cols=32 Identities=38% Similarity=0.514 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhh
Q 025678 213 KQAYHNELVSKVSRLEEENLKLKKEKE-ASTIF 244 (249)
Q Consensus 213 Kkay~~eLE~~v~~L~~EN~~L~~e~e-~~~~~ 244 (249)
|+-|-...|.+|..|+.+|..|.++++ |..-|
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888889999999999999999987 55544
No 66
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=30.94 E-value=90 Score=24.64 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 215 AYHNELVSKVSRLEEENLKLKKEK 238 (249)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~e~ 238 (249)
.|+..|...+..|..+|..|+.++
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~ 48 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEI 48 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666667777776666664
No 67
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=30.16 E-value=2.6e+02 Score=21.69 Aligned_cols=44 Identities=18% Similarity=0.064 Sum_probs=32.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 196 LRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 196 ~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
.-++|+.=...|.+=.-=-.++++...+..+|+.||+.|+.-..
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~ 61 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIG 61 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555554556666665677889999999999999999987743
No 68
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=29.64 E-value=1.3e+02 Score=18.13 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025678 218 NELVSKVSRLEEENLKL 234 (249)
Q Consensus 218 ~eLE~~v~~L~~EN~~L 234 (249)
.+||.+...|++|.+.|
T Consensus 4 k~lEa~~qkLe~e~q~~ 20 (21)
T PF02370_consen 4 KQLEADHQKLEAEKQIS 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 47888888888887765
No 69
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=29.36 E-value=2.8e+02 Score=25.02 Aligned_cols=12 Identities=42% Similarity=0.642 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 025678 226 RLEEENLKLKKE 237 (249)
Q Consensus 226 ~L~~EN~~L~~e 237 (249)
.|++||++|++.
T Consensus 97 ~l~~en~~L~~l 108 (276)
T PRK13922 97 QLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 70
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=29.33 E-value=1.7e+02 Score=26.39 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=23.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-Hhhhhh
Q 025678 200 IKNRESAARSRARKQAYHNELVSKVSRLEEENL---KLKKEKE-ASTIFL 245 (249)
Q Consensus 200 ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~---~L~~e~e-~~~~~~ 245 (249)
++.--..-.+...=++.-++|+.+++.|+.++. .|+.|++ |..+|.
T Consensus 61 ~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 61 VSGVFESLASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333334444444555566666666666666 3455543 444443
No 71
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=28.94 E-value=3.7e+02 Score=23.30 Aligned_cols=50 Identities=18% Similarity=0.140 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 188 ~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e 237 (249)
....-++|+.+...+-..|.+.+..=.+...+.|.++...+.+-.+++.+
T Consensus 35 I~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 35 AEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666667777777777766665555555555555555444444333
No 72
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=28.39 E-value=1.1e+02 Score=24.27 Aligned_cols=14 Identities=43% Similarity=0.608 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 025678 224 VSRLEEENLKLKKE 237 (249)
Q Consensus 224 v~~L~~EN~~L~~e 237 (249)
.+.|.+||+.|+.|
T Consensus 32 ~~kL~~en~qlk~E 45 (87)
T PF10883_consen 32 NAKLQKENEQLKTE 45 (87)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555444
No 73
>PF08563 P53_TAD: P53 transactivation motif; InterPro: IPR013872 The binding of this protein by regulatory proteins regulates p53 transcription activation. This entry is comprised of a single amphipathic alpha helix and contains a highly conserved motif [, ]. ; GO: 0005515 protein binding; PDB: 1YCQ_B 2Z5T_R 3DAB_B 3DAC_B 2Z5S_Q 2K8F_B 2L14_B 1YCR_B.
Probab=28.29 E-value=36 Score=21.26 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=10.7
Q ss_pred ccccccCCchHhhhHHH
Q 025678 89 LARALSGKTVEQVWNEI 105 (249)
Q Consensus 89 lp~~ls~KTVDEVWrdI 105 (249)
+-.+||+-|-++.|+-+
T Consensus 6 ~~~PLSQeTF~~LW~~l 22 (25)
T PF08563_consen 6 PELPLSQETFSDLWNLL 22 (25)
T ss_dssp -----STCCHHHHHHTS
T ss_pred CCCCccHHHHHHHHHhc
Confidence 34579999999999854
No 74
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=28.17 E-value=3.4e+02 Score=22.30 Aligned_cols=44 Identities=25% Similarity=0.330 Sum_probs=29.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 195 RLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEK 238 (249)
Q Consensus 195 r~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~ 238 (249)
...|=...||.......++..-+..|+..+..|+.+++.+.++.
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~ 89 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELEREL 89 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677777777777777777777777777776666653
No 75
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=27.96 E-value=82 Score=25.98 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025678 213 KQAYHNELVSKVSRLEEENLKLKKEKEAS 241 (249)
Q Consensus 213 Kkay~~eLE~~v~~L~~EN~~L~~e~e~~ 241 (249)
=|.-+++|-.+|...++||-+|+.||++.
T Consensus 68 LQnTLdDLSqRVdsVKEEnLKLrSENQVL 96 (120)
T KOG3650|consen 68 LQNTLDDLSQRVDSVKEENLKLRSENQVL 96 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 35678888899999999999999998743
No 76
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=27.86 E-value=2.5e+02 Score=29.90 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025678 220 LVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 220 LE~~v~~L~~EN~~L~~e 237 (249)
|+.+.-+|+.+-++|.++
T Consensus 651 l~~erlrle~qRQrLERE 668 (940)
T KOG4661|consen 651 LKAERLRLERQRQRLERE 668 (940)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455555555556555
No 77
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=27.34 E-value=46 Score=32.26 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 212 RKQAYHNELVSKVSRLEEENLKLKKEK 238 (249)
Q Consensus 212 RKkay~~eLE~~v~~L~~EN~~L~~e~ 238 (249)
--..|+.+||.+.-+|-.+|-+|++.+
T Consensus 102 QTa~yI~~Le~~Kt~ll~qn~elKr~~ 128 (373)
T KOG0561|consen 102 QTADYIHQLEGHKTELLPQNGELKRLK 128 (373)
T ss_pred HHHHHHHHHHhcccccccccchHHHHH
Confidence 345899999999999999999999874
No 78
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=27.25 E-value=5.7e+02 Score=24.59 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 025678 189 EKSIERRLRRKIKNRESAARSRARKQAY---HNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 189 e~~~err~rR~ikNReSA~rSR~RKkay---~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
.+.-.||+.|++.-=.=-++-|+.+.+- +++||.+-..|+..-..|.+|..
T Consensus 226 ~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ 279 (294)
T KOG4571|consen 226 KKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIR 279 (294)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777662222234445555554 45566777788888888877754
No 79
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=26.80 E-value=4.8e+02 Score=23.67 Aligned_cols=55 Identities=22% Similarity=0.257 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 025678 192 IERRLRRKIKNRESAARSRARKQ----AYHNELVSKVSRLEEENLKLKKEKEASTIFLL 246 (249)
Q Consensus 192 ~err~rR~ikNReSA~rSR~RKk----ay~~eLE~~v~~L~~EN~~L~~e~e~~~~~~~ 246 (249)
.-+|.||-...+.++-.-+-+=- .+++..=.++..|++.|++|+.+|+=.+=|.|
T Consensus 21 l~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCC 79 (195)
T PF10226_consen 21 LVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCC 79 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45677777777776654443322 23444445778888888888888654444443
No 80
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=26.69 E-value=1.3e+02 Score=22.63 Aligned_cols=13 Identities=23% Similarity=0.302 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 025678 225 SRLEEENLKLKKE 237 (249)
Q Consensus 225 ~~L~~EN~~L~~e 237 (249)
..+..|+..|..+
T Consensus 31 ~~~~~ER~~L~ek 43 (65)
T TIGR02449 31 KTWREERAQLLEK 43 (65)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 81
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=26.69 E-value=2.1e+02 Score=25.13 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 212 RKQAYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 212 RKkay~~eLE~~v~~L~~EN~~L~~e 237 (249)
+.+..+.+|..++..|+.||..|..+
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~ 133 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQR 133 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666666666666554
No 82
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=26.47 E-value=3.7e+02 Score=24.51 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLK 235 (249)
Q Consensus 188 ~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~ 235 (249)
.-+..++|+.++.++-..|...+..=++...+.+.++..++.+-..+.
T Consensus 30 i~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii 77 (250)
T PRK14474 30 IIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFM 77 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777666666666666666666655554443
No 83
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=25.89 E-value=4.7e+02 Score=23.19 Aligned_cols=31 Identities=26% Similarity=0.207 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 209 SRARKQAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 209 SR~RKkay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
-=++|++|+.+.+.+...++.+..+|+.+.+
T Consensus 140 G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~ 170 (176)
T PF12999_consen 140 GLKIRQELIEEAKKKREELEKKLEELEKEIQ 170 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777777777777776643
No 84
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=25.84 E-value=3.3e+02 Score=24.10 Aligned_cols=30 Identities=30% Similarity=0.326 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 210 RARKQAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 210 R~RKkay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
..++-..+.+||.++-.|+.+.+.+..+++
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~ke 155 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEKKE 155 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777666665443
No 85
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=25.73 E-value=1.7e+02 Score=29.82 Aligned_cols=59 Identities=27% Similarity=0.347 Sum_probs=44.4
Q ss_pred chhhhHHHHHHHHHHHhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH-HHHhhhh
Q 025678 186 NAFEKSIERRLRRKIKNRESAARSRARKQA----------YHNELVSKVSRLEEENLKLKKE-KEASTIF 244 (249)
Q Consensus 186 ~~~e~~~err~rR~ikNReSA~rSR~RKka----------y~~eLE~~v~~L~~EN~~L~~e-~e~~~~~ 244 (249)
+-..|.+.|+.|-|+.--||-++....=.. .=++|..+|..|+.+|.-|..+ +.+.-++
T Consensus 247 EriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v 316 (472)
T KOG0709|consen 247 ERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLV 316 (472)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 446678888888888888888887765442 2368999999999999998887 4444443
No 86
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=25.69 E-value=93 Score=32.40 Aligned_cols=53 Identities=21% Similarity=0.294 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 188 FEKSIERRLRRKIKNRESAARSRA---RKQAYHNELVSKVSRLEEENLKLKKEKEA 240 (249)
Q Consensus 188 ~e~~~err~rR~ikNReSA~rSR~---RKkay~~eLE~~v~~L~~EN~~L~~e~e~ 240 (249)
..+...|..|-...-..|.++-.. -=++++++|+.+-..|+.||..|+++.++
T Consensus 279 v~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~ 334 (655)
T KOG4343|consen 279 VLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDE 334 (655)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 444455555533333333333332 34689999999999999999999999653
No 87
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=25.68 E-value=4.3e+02 Score=22.74 Aligned_cols=47 Identities=6% Similarity=0.092 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKL 234 (249)
Q Consensus 188 ~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L 234 (249)
.....++|+.++.+.-+.|...+..-.....+.|.++...+.|-..+
T Consensus 56 I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~i 102 (181)
T PRK13454 56 IGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRI 102 (181)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666656666666666555555555555555555544443
No 88
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=25.60 E-value=4e+02 Score=22.22 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 190 KSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKL 234 (249)
Q Consensus 190 ~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L 234 (249)
+.-++|+.+..+.-..|.+.+..-.+...+.|.++...+.+-.++
T Consensus 49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~i 93 (156)
T CHL00118 49 KVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLE 93 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555565555555555555555555555444443
No 89
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=25.22 E-value=4.3e+02 Score=23.44 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKL 234 (249)
Q Consensus 188 ~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L 234 (249)
....-++|+.++.+.-+.|.+.+..=.....+.|.++...+.+-..+
T Consensus 78 I~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~I 124 (204)
T PRK09174 78 IGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSI 124 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777777666666666666665555554444
No 90
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=25.17 E-value=34 Score=26.06 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=13.4
Q ss_pred CccchhhhHHHhhhhcc
Q 025678 125 TLGELTLEDFLVQAGLF 141 (249)
Q Consensus 125 tlgeMTLEDFLvrAGvv 141 (249)
.|=.||.|||+.+|+..
T Consensus 41 ~LC~lt~edF~~~~~~~ 57 (75)
T cd08531 41 ELCKMTKEDFLRLTSAY 57 (75)
T ss_pred HHHcCCHHHHHHHcCCC
Confidence 35569999999998654
No 91
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=25.07 E-value=1.4e+02 Score=32.07 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=28.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh
Q 025678 198 RKIKNRESAARSRARKQAYHNELVSKVSRLEEEN--LKLKKEKEAS 241 (249)
Q Consensus 198 R~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN--~~L~~e~e~~ 241 (249)
|-++.=+=|+.+...||+|++||+-++.-|.+.- +++++.++++
T Consensus 414 ~~l~ksq~~kl~k~q~k~y~de~dyr~kl~~kkq~ke~~~r~k~~k 459 (763)
T TIGR00993 414 KPLTKAQMAKLSKEQRKAYLEEYDYRVKLLQKKQWREELKRMKMMK 459 (763)
T ss_pred ccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444456688899999999999998766554332 2344444443
No 92
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=24.75 E-value=1.8e+02 Score=24.12 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 211 ARKQAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 211 ~RKkay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
.+.+..-+.++.++..|+.+..+|..+.+
T Consensus 101 ~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~ 129 (134)
T PF07047_consen 101 RKEAKKEEELQERLEELEERIEELEEQVE 129 (134)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444666677778888777777744
No 93
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=24.71 E-value=35 Score=26.34 Aligned_cols=12 Identities=33% Similarity=0.639 Sum_probs=10.1
Q ss_pred cchhhhHHHhhh
Q 025678 127 GELTLEDFLVQA 138 (249)
Q Consensus 127 geMTLEDFLvrA 138 (249)
|=||||+||.|-
T Consensus 55 GW~tL~~fL~kh 66 (73)
T smart00243 55 GWETLDEYLLKH 66 (73)
T ss_pred cHHHHHHHHHhC
Confidence 559999999874
No 94
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=24.22 E-value=1.7e+02 Score=21.08 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=29.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 196 LRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKK 236 (249)
Q Consensus 196 ~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~ 236 (249)
.+++...||.-...|.--.+.+.+|+.+...|+.+.+.++.
T Consensus 10 e~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 10 ERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666655545555567899999999999998776653
No 95
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=23.98 E-value=1.5e+02 Score=23.71 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025678 211 ARKQAYHNELVSKVSRLEE 229 (249)
Q Consensus 211 ~RKkay~~eLE~~v~~L~~ 229 (249)
.+.++.-..|+.+|..|+.
T Consensus 44 ~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 44 AKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 3445555555555555544
No 96
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=23.78 E-value=4e+02 Score=21.70 Aligned_cols=50 Identities=12% Similarity=0.234 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 188 ~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e 237 (249)
....-++|..+..++-+.|...+..-++...+.+.++...+.+-..+..+
T Consensus 29 i~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~ 78 (156)
T PRK05759 29 IMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQ 78 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777777777777777777777777777777766665555444
No 97
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=23.71 E-value=36 Score=25.74 Aligned_cols=15 Identities=40% Similarity=0.233 Sum_probs=12.6
Q ss_pred ccchhhhHHHhhhhc
Q 025678 126 LGELTLEDFLVQAGL 140 (249)
Q Consensus 126 lgeMTLEDFLvrAGv 140 (249)
|=.||.|||+.+|+.
T Consensus 40 LC~ls~edF~~~~p~ 54 (71)
T cd08533 40 LCALGKERFLELAPD 54 (71)
T ss_pred HHcCCHHHHHHHcCC
Confidence 456999999999874
No 98
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=23.53 E-value=2.8e+02 Score=30.60 Aligned_cols=28 Identities=18% Similarity=0.340 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 025678 203 RESAARSRARKQAYHNELVSKVS-RLEEE 230 (249)
Q Consensus 203 ReSA~rSR~RKkay~~eLE~~v~-~L~~E 230 (249)
|..+-.-|.+.++|-..|+.++. +|.+|
T Consensus 964 RK~eEeqr~~qee~e~~l~~e~q~qla~e 992 (1259)
T KOG0163|consen 964 RKAEEEQRKAQEEEERRLALELQEQLAKE 992 (1259)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444 44433
No 99
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=23.44 E-value=38 Score=26.03 Aligned_cols=54 Identities=17% Similarity=0.101 Sum_probs=32.2
Q ss_pred cccccccccCCchHhhhHHHHhccccccCcccccCC---CCCCccchhhhHHHhhhh
Q 025678 86 SLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSHQ---REPTLGELTLEDFLVQAG 139 (249)
Q Consensus 86 S~tlp~~ls~KTVDEVWrdI~~~~~~~~~~~~~~~~---rq~tlgeMTLEDFLvrAG 139 (249)
.+-+|.....=|.++|+.=|.-......-....... .-..|=.||.|||+.+++
T Consensus 10 ~~~ip~dP~~Wt~~~V~~Wl~w~~~ef~L~~~~~~~f~m~G~~Lc~ls~edF~~~~p 66 (82)
T smart00251 10 RLGIPADPQLWTEDHVLEWLEWAVKEFSLSPIDFSKFDMSGKELCSMSKEEFLERAP 66 (82)
T ss_pred HhCCCCChhhCCHHHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHcCCHHHHHHHcC
Confidence 345566666778899988777554322111111111 112455699999999997
No 100
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=23.42 E-value=4.4e+02 Score=21.95 Aligned_cols=47 Identities=13% Similarity=0.076 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKL 234 (249)
Q Consensus 188 ~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L 234 (249)
..+.-++|+.+..++-+.|...+..=++...+.|.++...+.+-..+
T Consensus 33 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~i 79 (164)
T PRK14471 33 ILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAI 79 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666667777777777777766666666676666666554443
No 101
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=22.17 E-value=4.2e+02 Score=21.36 Aligned_cols=8 Identities=38% Similarity=0.572 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 025678 203 RESAARSR 210 (249)
Q Consensus 203 ReSA~rSR 210 (249)
||.|+...
T Consensus 57 rE~A~E~~ 64 (100)
T PF04568_consen 57 REAAQEEQ 64 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHhhHHH
Confidence 44444443
No 102
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=21.92 E-value=43 Score=25.59 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=13.5
Q ss_pred ccchhhhHHHhhhhccc
Q 025678 126 LGELTLEDFLVQAGLFA 142 (249)
Q Consensus 126 lgeMTLEDFLvrAGvv~ 142 (249)
|=.||-|||+.+|+...
T Consensus 42 LC~LskedF~~~ap~~~ 58 (75)
T cd08540 42 LCKMTKDDFQRLTPSYN 58 (75)
T ss_pred HHhCCHHHHHHHcCCCC
Confidence 45699999999997543
No 103
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=21.46 E-value=1.4e+02 Score=27.78 Aligned_cols=24 Identities=42% Similarity=0.469 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 215 AYHNELVSKVSRLEEENLKLKKEK 238 (249)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~e~ 238 (249)
+.+..+..++..|++||.+|+...
T Consensus 83 ~~~~~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 83 AELEQLLEEVESLEEENKRLKELL 106 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666778999999999998874
No 104
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=21.39 E-value=3.3e+02 Score=24.38 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025678 213 KQAYHNELVSKVSRLEEENLKLK 235 (249)
Q Consensus 213 Kkay~~eLE~~v~~L~~EN~~L~ 235 (249)
....+++||.++..++..-..|.
T Consensus 111 lr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 111 LRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555553
No 105
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=21.29 E-value=44 Score=24.48 Aligned_cols=16 Identities=50% Similarity=0.439 Sum_probs=13.4
Q ss_pred CccchhhhHHHhhhhc
Q 025678 125 TLGELTLEDFLVQAGL 140 (249)
Q Consensus 125 tlgeMTLEDFLvrAGv 140 (249)
.|=.||.|||+.|++.
T Consensus 37 ~Lc~ls~edF~~~~p~ 52 (66)
T cd08203 37 ELCLLTKEDFLRRAPS 52 (66)
T ss_pred HHHhCCHHHHHHHcCC
Confidence 4566999999999875
No 106
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=21.26 E-value=5.1e+02 Score=21.97 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 190 KSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLK 235 (249)
Q Consensus 190 ~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~ 235 (249)
+..++|+.++.+.-+.|...+..=++...+.|.++...+.+-..+.
T Consensus 45 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii 90 (173)
T PRK13453 45 DVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKIL 90 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555565566666555555555555555555555444433
No 107
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.20 E-value=4.9e+02 Score=24.36 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=29.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh
Q 025678 198 RKIKNRESAARSRARKQAYHNELVSKVSRLE----EENLKLKKEKEAS 241 (249)
Q Consensus 198 R~ikNReSA~rSR~RKkay~~eLE~~v~~L~----~EN~~L~~e~e~~ 241 (249)
++.+--.|.+....+.++.+.+||.+++..+ .-+..|..+-+..
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l 101 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKL 101 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Confidence 3333344677778888999999999999888 4444455544433
No 108
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=21.02 E-value=3.3e+02 Score=24.93 Aligned_cols=46 Identities=28% Similarity=0.299 Sum_probs=29.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 195 RLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKEA 240 (249)
Q Consensus 195 r~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~e~ 240 (249)
+.+.+.+-=+.|+....-=+.+.+++-.+...|-+||++|+.+.+.
T Consensus 166 el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 166 ELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 3444445555555555555566667777777888888888777553
No 109
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=20.63 E-value=5.2e+02 Score=21.80 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLK 235 (249)
Q Consensus 188 ~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~ 235 (249)
..+.-+.|+.++.+.-..|...+..=+....+.+.++...+.+-..+.
T Consensus 44 I~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii 91 (174)
T PRK07352 44 LGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIR 91 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666555556666655555555544443
No 110
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=20.45 E-value=5.3e+02 Score=21.79 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025678 188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKL 234 (249)
Q Consensus 188 ~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L 234 (249)
..+.-++|+.+....-+.|...+..=.+...+.+.++...+.+-...
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~i 89 (175)
T PRK14472 43 ILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKI 89 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666655555555555555555444443
No 111
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=20.42 E-value=71 Score=25.21 Aligned_cols=56 Identities=18% Similarity=0.092 Sum_probs=33.7
Q ss_pred ccccccccccCCchHhhhHHHHhccccccCccccc---CCCCCCccchhhhHHHhhhhc
Q 025678 85 ASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKS---HQREPTLGELTLEDFLVQAGL 140 (249)
Q Consensus 85 gS~tlp~~ls~KTVDEVWrdI~~~~~~~~~~~~~~---~~rq~tlgeMTLEDFLvrAGv 140 (249)
.-+.+|.....=|-+.||.=+.-......-.+... .-.-..|=.||.|||+.||..
T Consensus 11 ~rl~IP~DP~~Wt~~~V~~WL~Wa~~ef~L~~v~~~~F~m~Gk~LC~Ls~edF~~r~p~ 69 (89)
T cd08534 11 ERLKIPYDPMEWTEDQVLHWVVWAVKEFSLTDIDLSDWNITGRELCSLTQEEFFQRVPK 69 (89)
T ss_pred HhcCCCCChHHcCHHHHHHHHHHHHHHcCCCCCChhhcCCCHHHHhcCCHHHHHHHcCC
Confidence 34667777778888999887765432222111111 111123556999999999864
No 112
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.35 E-value=2.1e+02 Score=20.95 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025678 217 HNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 217 ~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
+++||.++..++.....+++|++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~ 24 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENE 24 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666643
No 113
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=20.32 E-value=1.3e+02 Score=22.01 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025678 220 LVSKVSRLEEENLKLKK 236 (249)
Q Consensus 220 LE~~v~~L~~EN~~L~~ 236 (249)
|..++..|+.+|.+|+.
T Consensus 38 l~~e~~~L~~qN~eLr~ 54 (60)
T PF14775_consen 38 LIQEKESLEQQNEELRS 54 (60)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455566666666554
No 114
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=20.16 E-value=89 Score=24.72 Aligned_cols=56 Identities=16% Similarity=0.026 Sum_probs=32.9
Q ss_pred ccccccccccCCchHhhhHHHHhccccccCcccccCC---CCCCccchhhhHHHhhhhc
Q 025678 85 ASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSHQ---REPTLGELTLEDFLVQAGL 140 (249)
Q Consensus 85 gS~tlp~~ls~KTVDEVWrdI~~~~~~~~~~~~~~~~---rq~tlgeMTLEDFLvrAGv 140 (249)
.-+.+|.....=|.+.||.=++-.....+-.+..... .-.-|=.||.|||+.+|..
T Consensus 11 ~rl~Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~i~~~~F~m~Gk~LC~Ls~edF~~~~P~ 69 (88)
T cd08542 11 QRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKECFLELAPD 69 (88)
T ss_pred hhcCCCCChhhCCHHHHHHHHHHHHHHcCCCCCCcccCCCCHHHHHcCCHHHHHhHcCC
Confidence 3466787778889999987665433211111111111 1123556999999999854
No 115
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=20.06 E-value=49 Score=24.52 Aligned_cols=16 Identities=44% Similarity=0.482 Sum_probs=13.4
Q ss_pred CccchhhhHHHhhhhc
Q 025678 125 TLGELTLEDFLVQAGL 140 (249)
Q Consensus 125 tlgeMTLEDFLvrAGv 140 (249)
.|=.||.|||+.|++.
T Consensus 39 ~LC~ms~edF~~~~p~ 54 (68)
T cd08757 39 TLCSMTEEEFREAAGS 54 (68)
T ss_pred HHHcCCHHHHHHHcCC
Confidence 4667999999999875
Done!