Query 025679
Match_columns 249
No_of_seqs 266 out of 1661
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 08:22:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.5 1.8E-14 3.8E-19 93.6 2.0 44 33-76 1-44 (44)
2 KOG4628 Predicted E3 ubiquitin 99.3 1E-12 2.2E-17 119.3 3.4 48 33-80 230-278 (348)
3 PF12678 zf-rbx1: RING-H2 zinc 99.2 6.2E-12 1.3E-16 90.5 3.6 45 32-76 19-73 (73)
4 KOG0823 Predicted E3 ubiquitin 99.2 1.1E-11 2.3E-16 106.0 3.1 55 29-86 44-101 (230)
5 PHA02929 N1R/p28-like protein; 99.2 2.4E-11 5.1E-16 105.8 4.9 53 28-80 170-227 (238)
6 PLN03208 E3 ubiquitin-protein 99.2 2E-11 4.2E-16 102.5 4.2 55 28-85 14-84 (193)
7 KOG0317 Predicted E3 ubiquitin 99.1 2.8E-11 6.1E-16 106.3 4.0 54 28-84 235-288 (293)
8 PF12861 zf-Apc11: Anaphase-pr 99.1 7.8E-11 1.7E-15 86.3 3.9 51 32-82 21-84 (85)
9 PF13923 zf-C3HC4_2: Zinc fing 99.1 4.4E-11 9.5E-16 75.6 2.3 39 35-75 1-39 (39)
10 COG5243 HRD1 HRD ubiquitin lig 99.1 5.4E-11 1.2E-15 107.6 3.2 60 20-80 276-345 (491)
11 PF13920 zf-C3HC4_3: Zinc fing 99.1 7.2E-11 1.6E-15 78.6 2.9 46 32-80 2-48 (50)
12 smart00504 Ubox Modified RING 99.0 3.7E-10 8E-15 78.2 5.5 55 32-89 1-55 (63)
13 KOG0320 Predicted E3 ubiquitin 99.0 1.4E-10 3.1E-15 95.4 2.6 56 29-85 128-183 (187)
14 PF15227 zf-C3HC4_4: zinc fing 99.0 2.4E-10 5.3E-15 73.4 2.8 38 35-75 1-42 (42)
15 COG5540 RING-finger-containing 99.0 2.3E-10 4.9E-15 101.1 3.1 50 32-81 323-373 (374)
16 cd00162 RING RING-finger (Real 99.0 4.8E-10 1E-14 71.4 3.7 44 34-79 1-45 (45)
17 TIGR00599 rad18 DNA repair pro 98.9 9.5E-10 2.1E-14 102.2 5.2 56 31-89 25-80 (397)
18 PHA02926 zinc finger-like prot 98.9 8.7E-10 1.9E-14 93.9 3.9 58 24-81 162-231 (242)
19 PF00097 zf-C3HC4: Zinc finger 98.9 8.5E-10 1.8E-14 70.2 2.4 39 35-75 1-41 (41)
20 PF14634 zf-RING_5: zinc-RING 98.8 2.8E-09 6.1E-14 69.1 3.5 44 34-77 1-44 (44)
21 KOG0287 Postreplication repair 98.8 1.8E-09 3.8E-14 96.8 2.8 61 32-95 23-83 (442)
22 KOG2164 Predicted E3 ubiquitin 98.8 3E-09 6.4E-14 100.0 2.8 52 32-86 186-242 (513)
23 smart00184 RING Ring finger. E 98.7 1.3E-08 2.7E-13 62.5 3.7 38 35-75 1-39 (39)
24 KOG0311 Predicted E3 ubiquitin 98.7 1.1E-09 2.5E-14 98.6 -1.7 49 32-82 43-92 (381)
25 KOG0802 E3 ubiquitin ligase [P 98.7 5.3E-09 1.1E-13 101.7 2.6 50 31-80 290-341 (543)
26 COG5574 PEX10 RING-finger-cont 98.7 8.9E-09 1.9E-13 89.7 2.6 49 32-83 215-265 (271)
27 COG5194 APC11 Component of SCF 98.6 2.1E-08 4.5E-13 72.0 2.5 36 48-83 49-84 (88)
28 PF04564 U-box: U-box domain; 98.6 3.9E-08 8.4E-13 70.6 3.9 57 31-90 3-60 (73)
29 KOG1493 Anaphase-promoting com 98.6 1.4E-08 3.1E-13 72.3 0.4 51 32-82 20-83 (84)
30 PF13445 zf-RING_UBOX: RING-ty 98.5 6.7E-08 1.4E-12 62.3 2.7 38 35-73 1-43 (43)
31 COG5432 RAD18 RING-finger-cont 98.5 6.6E-08 1.4E-12 85.3 2.7 48 32-82 25-72 (391)
32 PF14835 zf-RING_6: zf-RING of 98.4 1.3E-07 2.7E-12 65.6 1.4 57 32-92 7-63 (65)
33 KOG2177 Predicted E3 ubiquitin 98.4 1.4E-07 3.1E-12 82.3 2.0 44 31-77 12-55 (386)
34 TIGR00570 cdk7 CDK-activating 98.4 3.3E-07 7.1E-12 82.4 3.9 54 32-85 3-59 (309)
35 KOG1734 Predicted RING-contain 98.3 1.4E-07 3E-12 82.5 0.5 53 30-82 222-283 (328)
36 smart00744 RINGv The RING-vari 98.2 2.1E-06 4.5E-11 57.0 3.5 42 34-76 1-49 (49)
37 PF11793 FANCL_C: FANCL C-term 98.2 3E-07 6.5E-12 65.6 -0.6 51 32-82 2-68 (70)
38 KOG2930 SCF ubiquitin ligase, 98.1 8.5E-07 1.8E-11 66.8 1.6 50 32-81 46-109 (114)
39 KOG0828 Predicted E3 ubiquitin 98.1 1.7E-06 3.6E-11 81.3 2.3 49 32-80 571-634 (636)
40 KOG0978 E3 ubiquitin ligase in 98.0 2.8E-06 6E-11 83.6 1.7 51 32-85 643-694 (698)
41 KOG1039 Predicted E3 ubiquitin 98.0 5.3E-06 1.2E-10 76.0 3.3 58 25-82 154-223 (344)
42 COG5219 Uncharacterized conser 97.9 2.6E-06 5.6E-11 85.2 0.6 52 29-80 1466-1523(1525)
43 KOG0824 Predicted E3 ubiquitin 97.9 6.3E-06 1.4E-10 73.3 2.9 48 32-82 7-55 (324)
44 KOG0804 Cytoplasmic Zn-finger 97.9 3.5E-06 7.5E-11 78.4 1.2 47 32-80 175-222 (493)
45 KOG1785 Tyrosine kinase negati 97.9 1.6E-05 3.4E-10 73.2 5.3 50 34-86 371-422 (563)
46 KOG0827 Predicted E3 ubiquitin 97.9 8E-06 1.7E-10 74.8 2.8 48 33-80 5-56 (465)
47 KOG2660 Locus-specific chromos 97.8 4.1E-06 8.8E-11 75.3 0.4 49 32-82 15-63 (331)
48 KOG4172 Predicted E3 ubiquitin 97.8 5.4E-06 1.2E-10 55.5 0.8 46 32-80 7-54 (62)
49 KOG0825 PHD Zn-finger protein 97.8 5.4E-06 1.2E-10 81.6 -0.2 52 30-81 121-172 (1134)
50 KOG4265 Predicted E3 ubiquitin 97.8 1.8E-05 4E-10 71.9 3.2 47 31-80 289-336 (349)
51 KOG4445 Uncharacterized conser 97.7 7.9E-06 1.7E-10 72.6 0.6 51 32-82 115-188 (368)
52 PF11789 zf-Nse: Zinc-finger o 97.6 3.2E-05 7E-10 52.9 1.4 41 32-74 11-53 (57)
53 KOG4159 Predicted E3 ubiquitin 97.6 4.5E-05 9.8E-10 71.3 2.8 56 23-81 75-130 (398)
54 KOG2879 Predicted E3 ubiquitin 97.6 4.3E-05 9.4E-10 67.2 2.5 48 31-80 238-287 (298)
55 KOG1645 RING-finger-containing 97.5 7.6E-05 1.7E-09 68.9 3.6 51 31-81 3-57 (463)
56 COG5152 Uncharacterized conser 97.4 8.8E-05 1.9E-09 62.5 2.7 49 32-83 196-244 (259)
57 KOG1813 Predicted E3 ubiquitin 97.4 7.5E-05 1.6E-09 66.4 2.5 63 33-98 242-304 (313)
58 KOG0297 TNF receptor-associate 97.4 6.8E-05 1.5E-09 70.3 1.9 52 31-84 20-71 (391)
59 KOG3970 Predicted E3 ubiquitin 97.4 0.00026 5.7E-09 60.7 5.3 61 32-93 50-118 (299)
60 KOG1428 Inhibitor of type V ad 97.4 0.00015 3.3E-09 75.4 4.0 70 31-100 3485-3569(3738)
61 KOG4692 Predicted E3 ubiquitin 97.3 0.00017 3.8E-09 65.5 3.3 54 25-81 415-468 (489)
62 KOG1941 Acetylcholine receptor 97.0 0.00023 5.1E-09 65.5 1.2 49 31-79 364-415 (518)
63 KOG1002 Nucleotide excision re 96.9 0.00054 1.2E-08 65.4 2.1 49 31-82 535-588 (791)
64 COG5236 Uncharacterized conser 96.8 0.00096 2.1E-08 60.7 3.5 52 25-79 54-107 (493)
65 PF14570 zf-RING_4: RING/Ubox 96.7 0.0016 3.6E-08 42.7 2.7 45 35-79 1-47 (48)
66 COG5175 MOT2 Transcriptional r 96.6 0.0013 2.9E-08 59.6 2.4 54 30-83 12-67 (480)
67 KOG3039 Uncharacterized conser 96.4 0.0029 6.3E-08 55.1 3.3 54 32-85 221-275 (303)
68 KOG3268 Predicted E3 ubiquitin 96.3 0.0025 5.5E-08 52.9 2.5 51 32-82 165-230 (234)
69 KOG4739 Uncharacterized protei 96.3 0.0013 2.9E-08 57.1 0.6 45 34-81 5-49 (233)
70 KOG4275 Predicted E3 ubiquitin 96.3 0.00072 1.6E-08 60.2 -1.2 42 32-80 300-342 (350)
71 PHA02862 5L protein; Provision 96.2 0.0037 8.1E-08 50.2 2.7 47 32-82 2-55 (156)
72 KOG0826 Predicted E3 ubiquitin 96.2 0.0044 9.6E-08 56.0 3.3 54 25-80 293-346 (357)
73 COG5222 Uncharacterized conser 96.0 0.0066 1.4E-07 54.4 3.6 44 32-77 274-318 (427)
74 KOG1571 Predicted E3 ubiquitin 96.0 0.0038 8.3E-08 57.1 2.2 45 30-80 303-347 (355)
75 KOG1814 Predicted E3 ubiquitin 95.9 0.0089 1.9E-07 55.6 4.3 46 32-77 184-237 (445)
76 KOG1952 Transcription factor N 95.9 0.0064 1.4E-07 61.0 3.1 48 32-79 191-246 (950)
77 KOG4185 Predicted E3 ubiquitin 95.8 0.0098 2.1E-07 53.4 4.1 49 33-81 4-56 (296)
78 PF04641 Rtf2: Rtf2 RING-finge 95.8 0.0075 1.6E-07 53.5 3.2 54 30-84 111-165 (260)
79 KOG1940 Zn-finger protein [Gen 95.8 0.0055 1.2E-07 54.7 2.1 51 31-82 157-208 (276)
80 PHA02825 LAP/PHD finger-like p 95.5 0.013 2.8E-07 47.9 3.3 46 31-80 7-59 (162)
81 PF12906 RINGv: RING-variant d 95.5 0.008 1.7E-07 39.3 1.7 40 35-75 1-47 (47)
82 PF10367 Vps39_2: Vacuolar sor 95.3 0.0064 1.4E-07 45.9 0.9 34 29-63 75-108 (109)
83 PF05883 Baculo_RING: Baculovi 95.2 0.0098 2.1E-07 47.4 1.5 45 32-76 26-76 (134)
84 PHA03096 p28-like protein; Pro 95.2 0.013 2.8E-07 52.7 2.4 45 33-77 179-231 (284)
85 PF03854 zf-P11: P-11 zinc fin 94.9 0.009 2E-07 39.0 0.4 42 35-81 5-47 (50)
86 PF14447 Prok-RING_4: Prokaryo 94.8 0.016 3.4E-07 39.1 1.5 47 32-83 7-53 (55)
87 PF08746 zf-RING-like: RING-li 94.6 0.015 3.3E-07 37.3 1.0 39 35-75 1-43 (43)
88 KOG2932 E3 ubiquitin ligase in 94.6 0.015 3.3E-07 52.3 1.3 42 34-79 92-133 (389)
89 KOG1001 Helicase-like transcri 94.6 0.0094 2E-07 59.6 -0.1 47 33-83 455-503 (674)
90 KOG2114 Vacuolar assembly/sort 94.2 0.024 5.3E-07 57.0 1.9 42 32-78 840-881 (933)
91 KOG0298 DEAD box-containing he 94.2 0.014 3E-07 61.1 0.1 43 33-77 1154-1196(1394)
92 PF07800 DUF1644: Protein of u 94.0 0.057 1.2E-06 44.2 3.4 33 31-66 1-46 (162)
93 COG5183 SSM4 Protein involved 93.4 0.064 1.4E-06 53.9 3.2 54 29-83 9-69 (1175)
94 KOG2817 Predicted E3 ubiquitin 92.6 0.11 2.4E-06 48.3 3.2 46 32-77 334-382 (394)
95 KOG4367 Predicted Zn-finger pr 92.6 0.069 1.5E-06 50.3 1.9 34 30-66 2-35 (699)
96 KOG3800 Predicted E3 ubiquitin 92.3 0.16 3.4E-06 45.5 3.7 49 34-82 2-53 (300)
97 KOG0801 Predicted E3 ubiquitin 92.2 0.044 9.5E-07 45.0 0.2 31 29-59 174-204 (205)
98 KOG3002 Zn finger protein [Gen 92.1 0.12 2.6E-06 46.8 2.8 44 30-80 46-91 (299)
99 COG5220 TFB3 Cdk activating ki 91.9 0.05 1.1E-06 47.4 0.2 50 30-79 8-63 (314)
100 KOG2034 Vacuolar sorting prote 91.8 0.081 1.8E-06 53.7 1.6 35 31-66 816-850 (911)
101 KOG0827 Predicted E3 ubiquitin 91.4 0.018 3.8E-07 53.3 -3.3 51 32-82 196-247 (465)
102 PF05290 Baculo_IE-1: Baculovi 91.4 0.17 3.7E-06 40.3 2.6 50 31-82 79-134 (140)
103 PF02891 zf-MIZ: MIZ/SP-RING z 90.3 0.29 6.3E-06 32.3 2.6 43 33-78 3-50 (50)
104 PF10272 Tmpp129: Putative tra 90.2 0.18 4E-06 46.7 2.1 32 53-84 311-355 (358)
105 KOG0825 PHD Zn-finger protein 89.7 0.21 4.6E-06 50.2 2.3 49 31-79 95-153 (1134)
106 KOG3053 Uncharacterized conser 89.1 0.34 7.4E-06 42.7 2.9 52 31-82 19-84 (293)
107 KOG3899 Uncharacterized conser 88.8 0.22 4.8E-06 44.6 1.6 32 53-84 325-369 (381)
108 KOG3579 Predicted E3 ubiquitin 88.7 0.18 3.9E-06 45.0 0.9 36 30-68 266-305 (352)
109 KOG0802 E3 ubiquitin ligase [P 88.6 0.22 4.7E-06 48.8 1.5 46 32-84 479-524 (543)
110 KOG4362 Transcriptional regula 88.6 0.11 2.5E-06 51.6 -0.5 46 32-80 21-69 (684)
111 KOG0309 Conserved WD40 repeat- 88.6 0.27 5.8E-06 49.3 2.1 41 33-74 1029-1069(1081)
112 KOG1100 Predicted E3 ubiquitin 88.4 0.19 4.2E-06 43.1 0.9 38 35-79 161-199 (207)
113 KOG4718 Non-SMC (structural ma 86.8 0.31 6.8E-06 41.8 1.2 47 32-80 181-227 (235)
114 KOG1812 Predicted E3 ubiquitin 86.7 0.25 5.5E-06 46.3 0.7 37 32-68 146-183 (384)
115 PF14569 zf-UDP: Zinc-binding 85.6 0.93 2E-05 32.8 2.9 52 29-80 6-62 (80)
116 PF14446 Prok-RING_1: Prokaryo 84.6 1.3 2.8E-05 29.9 3.0 32 32-63 5-37 (54)
117 KOG3161 Predicted E3 ubiquitin 82.9 0.47 1E-05 46.8 0.6 40 32-73 11-51 (861)
118 COG5109 Uncharacterized conser 81.0 1.2 2.5E-05 40.6 2.4 46 31-76 335-383 (396)
119 KOG2068 MOT2 transcription fac 80.2 1.3 2.9E-05 40.4 2.5 49 33-81 250-299 (327)
120 KOG2807 RNA polymerase II tran 80.2 1.4 3E-05 40.3 2.5 58 19-76 316-374 (378)
121 KOG1815 Predicted E3 ubiquitin 79.9 1.3 2.8E-05 42.4 2.4 37 30-68 68-104 (444)
122 KOG3113 Uncharacterized conser 79.7 2.1 4.5E-05 37.8 3.4 76 8-85 71-163 (293)
123 KOG1609 Protein involved in mR 79.4 1.3 2.8E-05 39.6 2.2 49 32-80 78-134 (323)
124 KOG3039 Uncharacterized conser 79.3 1.3 2.9E-05 38.9 2.1 33 32-67 43-75 (303)
125 KOG1829 Uncharacterized conser 78.3 0.86 1.9E-05 44.8 0.7 27 48-77 532-558 (580)
126 PLN02189 cellulose synthase 76.8 2.3 5.1E-05 44.5 3.3 53 28-80 30-87 (1040)
127 KOG0269 WD40 repeat-containing 75.6 2 4.4E-05 43.3 2.5 40 34-74 781-820 (839)
128 KOG0824 Predicted E3 ubiquitin 75.6 0.92 2E-05 41.0 0.1 47 32-80 105-151 (324)
129 KOG1812 Predicted E3 ubiquitin 73.8 1.8 3.9E-05 40.7 1.5 42 33-75 307-351 (384)
130 PLN02638 cellulose synthase A 73.5 3.3 7.2E-05 43.5 3.5 49 32-80 17-70 (1079)
131 PLN02436 cellulose synthase A 72.7 3.4 7.4E-05 43.4 3.3 53 28-80 32-89 (1094)
132 PF07975 C1_4: TFIIH C1-like d 71.4 1.7 3.7E-05 28.9 0.6 42 35-76 2-50 (51)
133 PLN02400 cellulose synthase 71.2 3.2 6.9E-05 43.7 2.7 54 27-80 31-89 (1085)
134 COG5627 MMS21 DNA repair prote 69.9 4.4 9.5E-05 35.5 2.9 60 32-93 189-252 (275)
135 PF06844 DUF1244: Protein of u 68.8 3 6.6E-05 29.1 1.4 12 56-67 11-22 (68)
136 TIGR00622 ssl1 transcription f 65.1 5.6 0.00012 30.9 2.4 45 32-76 55-110 (112)
137 KOG2066 Vacuolar assembly/sort 65.1 3.2 7E-05 42.1 1.3 45 30-75 782-830 (846)
138 PF13901 DUF4206: Domain of un 63.7 4.9 0.00011 34.3 2.0 41 32-77 152-197 (202)
139 smart00249 PHD PHD zinc finger 63.2 4.3 9.4E-05 24.9 1.2 31 34-64 1-31 (47)
140 KOG2169 Zn-finger transcriptio 61.8 16 0.00034 36.7 5.5 58 33-95 307-371 (636)
141 PLN02195 cellulose synthase A 60.7 10 0.00022 39.7 3.9 50 32-81 6-60 (977)
142 PF04710 Pellino: Pellino; In 59.1 3.1 6.7E-05 39.0 0.0 33 46-81 302-340 (416)
143 PLN02915 cellulose synthase A 58.2 7.7 0.00017 40.8 2.6 49 32-80 15-68 (1044)
144 PF04216 FdhE: Protein involve 58.1 0.89 1.9E-05 40.9 -3.7 46 30-78 170-220 (290)
145 PF07191 zinc-ribbons_6: zinc- 57.9 0.82 1.8E-05 32.4 -3.1 41 32-80 1-41 (70)
146 KOG3005 GIY-YIG type nuclease 57.5 6.4 0.00014 35.1 1.7 48 33-80 183-243 (276)
147 smart00132 LIM Zinc-binding do 54.1 9.4 0.0002 22.4 1.6 37 34-79 1-37 (39)
148 PF00628 PHD: PHD-finger; Int 53.8 4.5 9.8E-05 26.0 0.1 43 34-76 1-49 (51)
149 KOG2789 Putative Zn-finger pro 51.7 6.2 0.00013 37.1 0.7 32 33-65 75-106 (482)
150 KOG3842 Adaptor protein Pellin 51.1 12 0.00026 34.3 2.3 50 32-81 341-415 (429)
151 COG4847 Uncharacterized protei 49.3 14 0.00031 27.8 2.1 35 32-67 6-40 (103)
152 PF04710 Pellino: Pellino; In 47.4 6.2 0.00013 37.1 0.0 51 32-82 328-403 (416)
153 COG3492 Uncharacterized protei 46.2 12 0.00026 28.0 1.3 12 56-67 42-53 (104)
154 KOG2231 Predicted E3 ubiquitin 44.9 16 0.00035 36.7 2.4 43 34-79 2-51 (669)
155 TIGR01562 FdhE formate dehydro 44.0 5.1 0.00011 36.5 -1.1 46 32-78 184-233 (305)
156 PF10497 zf-4CXXC_R1: Zinc-fin 42.9 36 0.00079 25.9 3.6 24 54-77 37-69 (105)
157 KOG3799 Rab3 effector RIM1 and 41.8 7.8 0.00017 31.1 -0.2 26 32-64 65-90 (169)
158 KOG1815 Predicted E3 ubiquitin 41.8 7.8 0.00017 37.0 -0.3 37 32-68 226-267 (444)
159 PRK03564 formate dehydrogenase 41.3 8.8 0.00019 35.1 -0.0 46 31-77 186-234 (309)
160 KOG2979 Protein involved in DN 40.8 15 0.00033 32.5 1.4 41 32-74 176-218 (262)
161 PF06906 DUF1272: Protein of u 40.4 53 0.0012 22.3 3.6 44 34-81 7-53 (57)
162 PF00412 LIM: LIM domain; Int 40.1 13 0.00027 24.3 0.6 40 35-83 1-40 (58)
163 smart00064 FYVE Protein presen 39.9 28 0.0006 23.8 2.4 35 32-66 10-45 (68)
164 PF02318 FYVE_2: FYVE-type zin 38.3 17 0.00037 28.1 1.2 46 31-77 53-102 (118)
165 smart00647 IBR In Between Ring 38.1 6.3 0.00014 26.3 -1.2 32 34-65 20-58 (64)
166 KOG0956 PHD finger protein AF1 37.7 12 0.00027 37.6 0.4 52 28-79 113-181 (900)
167 PF01363 FYVE: FYVE zinc finge 37.1 13 0.00028 25.6 0.3 36 30-65 7-43 (69)
168 PF05605 zf-Di19: Drought indu 36.3 20 0.00043 23.6 1.1 36 32-77 2-39 (54)
169 PF09943 DUF2175: Uncharacteri 35.4 25 0.00054 26.8 1.6 34 33-67 3-36 (101)
170 KOG4185 Predicted E3 ubiquitin 35.3 7.9 0.00017 34.6 -1.3 47 32-78 207-265 (296)
171 KOG1356 Putative transcription 34.3 10 0.00023 38.8 -0.7 45 32-77 229-279 (889)
172 PF13771 zf-HC5HC2H: PHD-like 34.0 12 0.00026 27.0 -0.3 35 28-64 32-68 (90)
173 KOG4021 Mitochondrial ribosoma 32.9 26 0.00056 29.9 1.5 36 59-94 97-133 (239)
174 PF06937 EURL: EURL protein; 32.5 42 0.0009 30.1 2.8 41 33-73 31-74 (285)
175 PLN02248 cellulose synthase-li 31.6 42 0.0009 35.9 3.0 32 52-83 149-180 (1135)
176 KOG1729 FYVE finger containing 29.7 9.7 0.00021 34.4 -1.6 35 34-68 216-250 (288)
177 cd00065 FYVE FYVE domain; Zinc 28.8 42 0.00092 21.8 1.8 34 33-66 3-37 (57)
178 KOG3726 Uncharacterized conser 28.5 32 0.00069 34.6 1.5 41 33-76 655-696 (717)
179 PF13832 zf-HC5HC2H_2: PHD-zin 28.3 45 0.00099 25.0 2.1 33 31-65 54-88 (110)
180 KOG4218 Nuclear hormone recept 28.1 54 0.0012 30.5 2.8 51 27-78 10-76 (475)
181 PF10571 UPF0547: Uncharacteri 28.0 15 0.00032 20.8 -0.5 9 34-42 2-10 (26)
182 KOG4451 Uncharacterized conser 27.5 47 0.001 29.1 2.2 27 56-82 250-276 (286)
183 KOG1818 Membrane trafficking a 27.4 35 0.00075 34.2 1.5 52 25-76 157-218 (634)
184 PF04423 Rad50_zn_hook: Rad50 27.0 21 0.00045 23.5 -0.0 12 71-82 22-33 (54)
185 PF14311 DUF4379: Domain of un 25.4 42 0.00091 22.1 1.3 9 67-75 47-55 (55)
186 KOG2231 Predicted E3 ubiquitin 25.0 14 0.0003 37.2 -1.7 46 28-75 74-121 (669)
187 PRK11088 rrmA 23S rRNA methylt 24.8 47 0.001 29.1 1.8 25 33-57 3-27 (272)
188 PF10146 zf-C4H2: Zinc finger- 24.7 60 0.0013 28.3 2.4 27 56-82 195-221 (230)
189 PF07649 C1_3: C1-like domain; 24.6 43 0.00093 19.2 1.0 29 34-62 2-30 (30)
190 PF14353 CpXC: CpXC protein 23.6 78 0.0017 24.5 2.7 46 33-81 2-50 (128)
191 PF06750 DiS_P_DiS: Bacterial 23.6 86 0.0019 23.2 2.8 23 62-84 51-73 (92)
192 PTZ00303 phosphatidylinositol 23.4 47 0.001 34.3 1.6 34 33-66 461-500 (1374)
193 COG0068 HypF Hydrogenase matur 22.9 43 0.00094 34.0 1.3 51 32-82 101-186 (750)
194 KOG2071 mRNA cleavage and poly 22.6 42 0.00091 33.2 1.1 35 31-66 512-557 (579)
195 PF01485 IBR: IBR domain; Int 22.5 8.3 0.00018 25.7 -2.8 33 33-65 19-58 (64)
196 PRK11595 DNA utilization prote 22.3 64 0.0014 27.7 2.2 37 34-78 7-43 (227)
197 KOG2113 Predicted RNA binding 22.0 62 0.0013 29.8 2.0 43 32-79 343-386 (394)
198 COG3813 Uncharacterized protei 21.2 1.2E+02 0.0026 21.8 2.9 49 34-84 7-56 (84)
199 PF13717 zinc_ribbon_4: zinc-r 21.1 42 0.00092 20.3 0.5 10 34-43 4-13 (36)
200 PF10083 DUF2321: Uncharacteri 20.6 60 0.0013 26.7 1.5 25 54-81 27-51 (158)
201 KOG1245 Chromatin remodeling c 20.5 41 0.00088 37.0 0.6 48 32-79 1108-1159(1404)
202 PRK04023 DNA polymerase II lar 20.1 68 0.0015 34.0 2.1 46 32-82 626-676 (1121)
203 PF13719 zinc_ribbon_5: zinc-r 20.0 59 0.0013 19.7 1.0 10 34-43 4-13 (37)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.47 E-value=1.8e-14 Score=93.58 Aligned_cols=44 Identities=43% Similarity=1.099 Sum_probs=39.3
Q ss_pred CcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCc
Q 025679 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr 76 (249)
+.|+||++.|..++.++.++|+|.||..||.+|++.+..||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999998777888889999999999999999999999997
No 2
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1e-12 Score=119.32 Aligned_cols=48 Identities=35% Similarity=1.019 Sum_probs=43.9
Q ss_pred CcCccccccccCCCCceeccCCCcchHHhHHHHHhcC-CCCCCCcccCC
Q 025679 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPIS 80 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~-~~CP~Cr~~i~ 80 (249)
++|.||+|+|..++.+++|||+|.||..||..||... ..||+||..+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 4999999999999999999999999999999999776 45999999764
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.23 E-value=6.2e-12 Score=90.50 Aligned_cols=45 Identities=36% Similarity=1.006 Sum_probs=36.3
Q ss_pred CCcCccccccccC----------CCCceeccCCCcchHHhHHHHHhcCCCCCCCc
Q 025679 32 DDACSICLEEFSE----------SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (249)
Q Consensus 32 d~~C~ICle~~~~----------~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr 76 (249)
++.|+||++.|.+ ..++.+.+|+|.||..||.+||..+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 5569999999942 12345568999999999999999999999997
No 4
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.1e-11 Score=105.98 Aligned_cols=55 Identities=33% Similarity=0.707 Sum_probs=44.5
Q ss_pred CCCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhc---CCCCCCCcccCCCCCcch
Q 025679 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLKDATS 86 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~---~~~CP~Cr~~i~~~~~~~ 86 (249)
+.....|.|||+.-+ .++++.|||.||+.||.+||+. ++.||+||..+..+...+
T Consensus 44 ~~~~FdCNICLd~ak---dPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvP 101 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAK---DPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVP 101 (230)
T ss_pred CCCceeeeeeccccC---CCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEe
Confidence 445779999999974 4567799999999999999975 457999999987665544
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.17 E-value=2.4e-11 Score=105.80 Aligned_cols=53 Identities=28% Similarity=0.830 Sum_probs=43.2
Q ss_pred CCCCCCcCccccccccCCCC-----ceeccCCCcchHHhHHHHHhcCCCCCCCcccCC
Q 025679 28 QDSCDDACSICLEEFSESDP-----STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 28 ~~~~d~~C~ICle~~~~~~~-----~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
....+..|+||++.+.+... .++++|+|.||..||..|+..+.+||+||..+.
T Consensus 170 ~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 170 NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 34457899999998763221 345689999999999999999999999999875
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.17 E-value=2e-11 Score=102.55 Aligned_cols=55 Identities=31% Similarity=0.727 Sum_probs=43.4
Q ss_pred CCCCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhc----------------CCCCCCCcccCCCCCcc
Q 025679 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----------------SSQCPMCWQPISLKDAT 85 (249)
Q Consensus 28 ~~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~----------------~~~CP~Cr~~i~~~~~~ 85 (249)
....+..|+||++.+. + +++++|||.||+.||.+|+.. ...||+||..+...+..
T Consensus 14 ~~~~~~~CpICld~~~--d-PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~Lv 84 (193)
T PLN03208 14 DSGGDFDCNICLDQVR--D-PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLV 84 (193)
T ss_pred cCCCccCCccCCCcCC--C-cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEE
Confidence 3445789999999984 4 456799999999999999852 24799999999765443
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.8e-11 Score=106.34 Aligned_cols=54 Identities=31% Similarity=0.851 Sum_probs=45.8
Q ss_pred CCCCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCCc
Q 025679 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (249)
Q Consensus 28 ~~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~ 84 (249)
..+.+..|.|||+.. ..+..+||||.||+.||..|+.....||+||..+...+.
T Consensus 235 i~~a~~kC~LCLe~~---~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 235 IPEATRKCSLCLENR---SNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCCCceEEEecCC---CCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence 344467999999997 446788999999999999999999999999999876543
No 8
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.09 E-value=7.8e-11 Score=86.30 Aligned_cols=51 Identities=43% Similarity=1.044 Sum_probs=41.1
Q ss_pred CCcCcccccccc----------CCCCceeccCCCcchHHhHHHHHhc---CCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFS----------ESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~----------~~~~~~~~~C~H~Fc~~Ci~~wl~~---~~~CP~Cr~~i~~~ 82 (249)
|+.|.||...|. ++-+++.-.|+|.||..||.+|+.. +..||+||+.+..+
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 788999998886 1224555689999999999999974 46899999998754
No 9
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.09 E-value=4.4e-11 Score=75.57 Aligned_cols=39 Identities=41% Similarity=1.144 Sum_probs=33.8
Q ss_pred CccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCC
Q 025679 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (249)
Q Consensus 35 C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~C 75 (249)
|+||++.+. +++++++|||.||..||.+|++.+..||+|
T Consensus 1 C~iC~~~~~--~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR--DPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-S--SEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCccc--CcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 899999996 566788999999999999999998899998
No 10
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=5.4e-11 Score=107.56 Aligned_cols=60 Identities=28% Similarity=0.782 Sum_probs=46.6
Q ss_pred HHhhhcCCCCCCCCcCcccccccc-CC---------CCceeccCCCcchHHhHHHHHhcCCCCCCCcccCC
Q 025679 20 AAFVEGGIQDSCDDACSICLEEFS-ES---------DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 20 ~~~v~~~~~~~~d~~C~ICle~~~-~~---------~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
+...++.+ .+.|..|.||++++. .+ ..++.++|||.||.+|++.|++++++||+||.++.
T Consensus 276 ~t~t~eql-~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 276 PTATEEQL-TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred chhhhhhh-cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 33344444 445899999999954 21 12466799999999999999999999999999964
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.08 E-value=7.2e-11 Score=78.60 Aligned_cols=46 Identities=35% Similarity=0.837 Sum_probs=39.5
Q ss_pred CCcCccccccccCCCCceeccCCCc-chHHhHHHHHhcCCCCCCCcccCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~-Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
+..|.||++.+ ..+.+++|+|. ||..|+..|+.....||+||+++.
T Consensus 2 ~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENP---RDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSB---SSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccC---CceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 67899999997 44677799999 999999999999999999999875
No 12
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.04 E-value=3.7e-10 Score=78.24 Aligned_cols=55 Identities=20% Similarity=0.415 Sum_probs=45.9
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCCcchHHH
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQEL 89 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~~~~~~ 89 (249)
+..|+||++.|. ++ ++++|||.||..||.+|+.....||+|+..+...+...+..
T Consensus 1 ~~~Cpi~~~~~~--~P-v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~ 55 (63)
T smart00504 1 EFLCPISLEVMK--DP-VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLA 55 (63)
T ss_pred CcCCcCCCCcCC--CC-EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHH
Confidence 457999999996 44 56699999999999999988889999999997766655433
No 13
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.4e-10 Score=95.37 Aligned_cols=56 Identities=30% Similarity=0.637 Sum_probs=45.6
Q ss_pred CCCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCCcc
Q 025679 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDAT 85 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~~ 85 (249)
.+.-..|+|||+.+... -++-+.|||+||..||+..+.....||+|++.|..+.+.
T Consensus 128 ~~~~~~CPiCl~~~sek-~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEK-VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFH 183 (187)
T ss_pred cccccCCCceecchhhc-cccccccchhHHHHHHHHHHHhCCCCCCcccccchhhhe
Confidence 33356899999999732 224479999999999999999999999999988776543
No 14
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.00 E-value=2.4e-10 Score=73.44 Aligned_cols=38 Identities=37% Similarity=0.934 Sum_probs=28.3
Q ss_pred CccccccccCCCCceeccCCCcchHHhHHHHHhcC----CCCCCC
Q 025679 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMC 75 (249)
Q Consensus 35 C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~----~~CP~C 75 (249)
|+||++.|. +| +.++|||.||..||..|+... ..||.|
T Consensus 1 CpiC~~~~~--~P-v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK--DP-VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S--SE-EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC--Cc-cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999995 44 556999999999999999643 469987
No 15
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.3e-10 Score=101.13 Aligned_cols=50 Identities=36% Similarity=0.878 Sum_probs=44.6
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHh-cCCCCCCCcccCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISL 81 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~-~~~~CP~Cr~~i~~ 81 (249)
...|.||++.|..++...++||.|.||..|+.+|+. -+..||+||..+..
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 468999999998778889999999999999999997 56789999998753
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.98 E-value=4.8e-10 Score=71.44 Aligned_cols=44 Identities=41% Similarity=1.090 Sum_probs=37.6
Q ss_pred cCccccccccCCCCceeccCCCcchHHhHHHHHhc-CCCCCCCcccC
Q 025679 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPI 79 (249)
Q Consensus 34 ~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~-~~~CP~Cr~~i 79 (249)
.|+||++.+. ++..+++|+|.||..|+..|+.. ...||+|+..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999984 56667679999999999999987 77899998754
No 17
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.93 E-value=9.5e-10 Score=102.21 Aligned_cols=56 Identities=29% Similarity=0.575 Sum_probs=46.1
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCCcchHHH
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQEL 89 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~~~~~~ 89 (249)
.+..|+||++.|. .+ ++++|+|.||..||..|+.....||+|+..+....+..+..
T Consensus 25 ~~l~C~IC~d~~~--~P-vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~ 80 (397)
T TIGR00599 25 TSLRCHICKDFFD--VP-VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWL 80 (397)
T ss_pred cccCCCcCchhhh--Cc-cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchH
Confidence 3789999999995 44 46799999999999999988889999999987655544433
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.91 E-value=8.7e-10 Score=93.92 Aligned_cols=58 Identities=26% Similarity=0.584 Sum_probs=43.9
Q ss_pred hcCCCCCCCCcCccccccccCC------CCceeccCCCcchHHhHHHHHhcC------CCCCCCcccCCC
Q 025679 24 EGGIQDSCDDACSICLEEFSES------DPSTVTSCKHEFHLQCVLEWCQRS------SQCPMCWQPISL 81 (249)
Q Consensus 24 ~~~~~~~~d~~C~ICle~~~~~------~~~~~~~C~H~Fc~~Ci~~wl~~~------~~CP~Cr~~i~~ 81 (249)
+..++...|.+|+||++.+... ....+.+|+|.||..||..|.... ..||+||..+..
T Consensus 162 e~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 162 EDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred HHHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 3445666689999999986421 124566999999999999999742 459999998753
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.89 E-value=8.5e-10 Score=70.15 Aligned_cols=39 Identities=44% Similarity=1.162 Sum_probs=33.9
Q ss_pred CccccccccCCCCceeccCCCcchHHhHHHHHh--cCCCCCCC
Q 025679 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ--RSSQCPMC 75 (249)
Q Consensus 35 C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~--~~~~CP~C 75 (249)
|+||++.+. ++..+++|+|.||..||.+|+. ....||+|
T Consensus 1 C~iC~~~~~--~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE--DPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS--SEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcccc--CCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999986 5555889999999999999998 45679998
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.84 E-value=2.8e-09 Score=69.07 Aligned_cols=44 Identities=36% Similarity=0.870 Sum_probs=38.3
Q ss_pred cCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcc
Q 025679 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (249)
Q Consensus 34 ~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~ 77 (249)
.|+||++.|.......+++|||.||..||..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999955567888999999999999999866778999985
No 21
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.82 E-value=1.8e-09 Score=96.82 Aligned_cols=61 Identities=26% Similarity=0.645 Sum_probs=52.0
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCCcchHHHHHHHHH
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQ 95 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~~~~~~~~~~~~ 95 (249)
-+.|-||.++| ..+.+++|+|.||..||+.+|..+..||.|+..+.+.++..+.+++.+.+
T Consensus 23 lLRC~IC~eyf---~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~ 83 (442)
T KOG0287|consen 23 LLRCGICFEYF---NIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVK 83 (442)
T ss_pred HHHHhHHHHHh---cCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHH
Confidence 56899999999 44567799999999999999999999999999998888777766655443
No 22
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3e-09 Score=100.03 Aligned_cols=52 Identities=40% Similarity=0.776 Sum_probs=42.7
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcC-----CCCCCCcccCCCCCcch
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-----SQCPMCWQPISLKDATS 86 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~-----~~CP~Cr~~i~~~~~~~ 86 (249)
+..|||||+... .+..+.|||+||+.||..+|... ..||+||..|..+++..
T Consensus 186 ~~~CPICL~~~~---~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~p 242 (513)
T KOG2164|consen 186 DMQCPICLEPPS---VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLP 242 (513)
T ss_pred CCcCCcccCCCC---cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceee
Confidence 779999999873 34556899999999999988643 47999999998877654
No 23
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.73 E-value=1.3e-08 Score=62.53 Aligned_cols=38 Identities=39% Similarity=1.095 Sum_probs=32.7
Q ss_pred CccccccccCCCCceeccCCCcchHHhHHHHHh-cCCCCCCC
Q 025679 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMC 75 (249)
Q Consensus 35 C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~-~~~~CP~C 75 (249)
|+||++.. ..+.+++|+|.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999984 4567779999999999999998 56779987
No 24
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.1e-09 Score=98.56 Aligned_cols=49 Identities=27% Similarity=0.685 Sum_probs=42.0
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHh-cCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~-~~~~CP~Cr~~i~~~ 82 (249)
+..|+|||+.++ ..++...|.|.||..||..-+. ..+.||.||+.+..+
T Consensus 43 ~v~c~icl~llk--~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 43 QVICPICLSLLK--KTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhccHHHHHHHH--hhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 779999999997 6677778999999999988875 567999999988544
No 25
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=5.3e-09 Score=101.69 Aligned_cols=50 Identities=34% Similarity=0.827 Sum_probs=42.8
Q ss_pred CCCcCccccccccCCCC--ceeccCCCcchHHhHHHHHhcCCCCCCCcccCC
Q 025679 31 CDDACSICLEEFSESDP--STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~--~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
.++.|.||+|.+..+.. ++.++|+|.||..||..|+++..+||+||..+.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 38899999999974322 567799999999999999999999999999554
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=8.9e-09 Score=89.68 Aligned_cols=49 Identities=37% Similarity=0.847 Sum_probs=41.4
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHH-HHhcCCC-CCCCcccCCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLE-WCQRSSQ-CPMCWQPISLKD 83 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~-wl~~~~~-CP~Cr~~i~~~~ 83 (249)
|..|.||++... .+..++|||+||+.||.. |-.++.. ||+||+....+.
T Consensus 215 d~kC~lC~e~~~---~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 215 DYKCFLCLEEPE---VPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccceeeeecccC---CcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 778999999984 456679999999999999 8877665 999999887664
No 27
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.61 E-value=2.1e-08 Score=72.01 Aligned_cols=36 Identities=31% Similarity=0.700 Sum_probs=31.2
Q ss_pred ceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCC
Q 025679 48 STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (249)
Q Consensus 48 ~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~ 83 (249)
+..-.|.|.||..||.+||..+..||++++.+...+
T Consensus 49 v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~ 84 (88)
T COG5194 49 VVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLAD 84 (88)
T ss_pred EEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEec
Confidence 444579999999999999999999999999886543
No 28
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.61 E-value=3.9e-08 Score=70.64 Aligned_cols=57 Identities=23% Similarity=0.419 Sum_probs=43.0
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHhc-CCCCCCCcccCCCCCcchHHHH
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATSQELL 90 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~-~~~CP~Cr~~i~~~~~~~~~~~ 90 (249)
++..|+||.+.|. +| ++++|||.|...||..|+.. ...||+|+..+...++..+..+
T Consensus 3 ~~f~CpIt~~lM~--dP-Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~L 60 (73)
T PF04564_consen 3 DEFLCPITGELMR--DP-VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRAL 60 (73)
T ss_dssp GGGB-TTTSSB-S--SE-EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHH
T ss_pred cccCCcCcCcHhh--Cc-eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHH
Confidence 3678999999995 54 45699999999999999988 7899999999998887776544
No 29
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.4e-08 Score=72.26 Aligned_cols=51 Identities=39% Similarity=0.931 Sum_probs=39.2
Q ss_pred CCcCcccccccc----------CCCCceeccCCCcchHHhHHHHHhc---CCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFS----------ESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~----------~~~~~~~~~C~H~Fc~~Ci~~wl~~---~~~CP~Cr~~i~~~ 82 (249)
+++|-||.-.|. ++-|.++--|.|.||..||.+|+.. +..||+||+.+..+
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~ 83 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQFK 83 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEec
Confidence 558999988885 2234444579999999999999953 45799999988654
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.52 E-value=6.7e-08 Score=62.33 Aligned_cols=38 Identities=39% Similarity=0.927 Sum_probs=22.4
Q ss_pred CccccccccC-CCCceeccCCCcchHHhHHHHHhcC----CCCC
Q 025679 35 CSICLEEFSE-SDPSTVTSCKHEFHLQCVLEWCQRS----SQCP 73 (249)
Q Consensus 35 C~ICle~~~~-~~~~~~~~C~H~Fc~~Ci~~wl~~~----~~CP 73 (249)
|+||++ |.+ ..++++|+|||.||..||.+|+..+ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 643 3457778999999999999999743 3576
No 31
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.48 E-value=6.6e-08 Score=85.28 Aligned_cols=48 Identities=25% Similarity=0.468 Sum_probs=42.0
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
-+.|-||-+.|. ...+++|||.||..||+.+|..+..||+||....+.
T Consensus 25 ~lrC~IC~~~i~---ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~es 72 (391)
T COG5432 25 MLRCRICDCRIS---IPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCES 72 (391)
T ss_pred HHHhhhhhheee---cceecccccchhHHHHHHHhcCCCCCccccccHHhh
Confidence 568999999984 346679999999999999999999999999987653
No 32
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.38 E-value=1.3e-07 Score=65.62 Aligned_cols=57 Identities=28% Similarity=0.695 Sum_probs=28.9
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCCcchHHHHHH
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEA 92 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~~~~~~~~~ 92 (249)
-..|++|.+.|. +++.+..|.|+||..||...+. ..||+|+.+.-.+|...+..+..
T Consensus 7 lLrCs~C~~~l~--~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~NrqLd~ 63 (65)
T PF14835_consen 7 LLRCSICFDILK--EPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQINRQLDS 63 (65)
T ss_dssp TTS-SSS-S--S--S-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----HHHHH
T ss_pred hcCCcHHHHHhc--CCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhhhhhhc
Confidence 458999999996 7777789999999999987544 35999999988888777665544
No 33
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.4e-07 Score=82.31 Aligned_cols=44 Identities=32% Similarity=0.794 Sum_probs=38.8
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcc
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~ 77 (249)
++..|+||++.|. ++ ++++|+|.||..||..|+.....||.||.
T Consensus 12 ~~~~C~iC~~~~~--~p-~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFR--EP-VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhh--cC-ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 4789999999996 55 77899999999999999886668999995
No 34
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.35 E-value=3.3e-07 Score=82.43 Aligned_cols=54 Identities=24% Similarity=0.458 Sum_probs=39.6
Q ss_pred CCcCccccccccCCCCc--eeccCCCcchHHhHHHHHh-cCCCCCCCcccCCCCCcc
Q 025679 32 DDACSICLEEFSESDPS--TVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLKDAT 85 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~--~~~~C~H~Fc~~Ci~~wl~-~~~~CP~Cr~~i~~~~~~ 85 (249)
+..||||.......... .+.+|||.||..||..+|. ....||.|+..+....+.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence 56899999953322222 2237999999999999664 456899999988766543
No 35
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.4e-07 Score=82.45 Aligned_cols=53 Identities=32% Similarity=0.802 Sum_probs=43.1
Q ss_pred CCCCcCccccccccCCC-------CceeccCCCcchHHhHHHHHh--cCCCCCCCcccCCCC
Q 025679 30 SCDDACSICLEEFSESD-------PSTVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQPISLK 82 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~-------~~~~~~C~H~Fc~~Ci~~wl~--~~~~CP~Cr~~i~~~ 82 (249)
.+|..|.||-..+..+. ....+.|+|.||..||+-|.- ++++||.|++.+..+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 45789999999886443 356689999999999999974 567999999988654
No 36
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.16 E-value=2.1e-06 Score=56.95 Aligned_cols=42 Identities=29% Similarity=0.769 Sum_probs=31.9
Q ss_pred cCccccccccCCCCceeccCC-----CcchHHhHHHHHhcC--CCCCCCc
Q 025679 34 ACSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQRS--SQCPMCW 76 (249)
Q Consensus 34 ~C~ICle~~~~~~~~~~~~C~-----H~Fc~~Ci~~wl~~~--~~CP~Cr 76 (249)
.|-||++... ++...+.||. |.||..||.+|+..+ ..||+|+
T Consensus 1 ~CrIC~~~~~-~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD-EGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCC-CCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998333 3444567885 889999999999654 5899995
No 37
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.16 E-value=3e-07 Score=65.56 Aligned_cols=51 Identities=39% Similarity=0.877 Sum_probs=24.6
Q ss_pred CCcCccccccccCCC--Ccee---ccCCCcchHHhHHHHHhc---C--------CCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESD--PSTV---TSCKHEFHLQCVLEWCQR---S--------SQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~--~~~~---~~C~H~Fc~~Ci~~wl~~---~--------~~CP~Cr~~i~~~ 82 (249)
+..|.||+..+.+.. +..+ ..|+..||..||.+|+.. . ..||.|+.+|..+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 568999999875222 2222 268999999999999853 1 1499999988643
No 38
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=8.5e-07 Score=66.81 Aligned_cols=50 Identities=26% Similarity=0.690 Sum_probs=38.2
Q ss_pred CCcCcccccccc------------CCCC--ceeccCCCcchHHhHHHHHhcCCCCCCCcccCCC
Q 025679 32 DDACSICLEEFS------------ESDP--STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (249)
Q Consensus 32 d~~C~ICle~~~------------~~~~--~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~ 81 (249)
-+.|+||..-+- ..+. +..-.|.|.||+.||.+||.....||+|.+.+..
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVF 109 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeE
Confidence 568999976442 1111 2334799999999999999999999999888754
No 39
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.7e-06 Score=81.27 Aligned_cols=49 Identities=33% Similarity=0.861 Sum_probs=38.5
Q ss_pred CCcCccccccccCC--------------CCceeccCCCcchHHhHHHHHhc-CCCCCCCcccCC
Q 025679 32 DDACSICLEEFSES--------------DPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPIS 80 (249)
Q Consensus 32 d~~C~ICle~~~~~--------------~~~~~~~C~H~Fc~~Ci~~wl~~-~~~CP~Cr~~i~ 80 (249)
...|+||+..+... ....++||.|.||..||..|... +-.||+||.++.
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 45799999987411 11245699999999999999985 559999999875
No 40
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.8e-06 Score=83.64 Aligned_cols=51 Identities=27% Similarity=0.632 Sum_probs=42.7
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHh-cCCCCCCCcccCCCCCcc
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLKDAT 85 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~-~~~~CP~Cr~~i~~~~~~ 85 (249)
-+.|+.|-..+ +.++++.|+|.||..|+...+. +...||.|-..|...|+.
T Consensus 643 ~LkCs~Cn~R~---Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~ 694 (698)
T KOG0978|consen 643 LLKCSVCNTRW---KDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVH 694 (698)
T ss_pred ceeCCCccCch---hhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccc
Confidence 46899999887 4466779999999999999986 678999999998766643
No 41
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=5.3e-06 Score=76.00 Aligned_cols=58 Identities=34% Similarity=0.823 Sum_probs=43.2
Q ss_pred cCCCCCCCCcCccccccccCCC-----CceeccCCCcchHHhHHHHHh--c-----CCCCCCCcccCCCC
Q 025679 25 GGIQDSCDDACSICLEEFSESD-----PSTVTSCKHEFHLQCVLEWCQ--R-----SSQCPMCWQPISLK 82 (249)
Q Consensus 25 ~~~~~~~d~~C~ICle~~~~~~-----~~~~~~C~H~Fc~~Ci~~wl~--~-----~~~CP~Cr~~i~~~ 82 (249)
..++...+.+|.||++.+.... -..+.+|.|.||..||..|-. + .+.||.||......
T Consensus 154 ~a~~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 154 FALQKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cCcCccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 3455677899999999886322 112357999999999999983 3 46899999876544
No 42
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.92 E-value=2.6e-06 Score=85.21 Aligned_cols=52 Identities=31% Similarity=0.854 Sum_probs=38.9
Q ss_pred CCCCCcCcccccccc--CC-CC-ceeccCCCcchHHhHHHHHhc--CCCCCCCcccCC
Q 025679 29 DSCDDACSICLEEFS--ES-DP-STVTSCKHEFHLQCVLEWCQR--SSQCPMCWQPIS 80 (249)
Q Consensus 29 ~~~d~~C~ICle~~~--~~-~~-~~~~~C~H~Fc~~Ci~~wl~~--~~~CP~Cr~~i~ 80 (249)
-+--.+|+||+..+. +. -| -+...|+|.||..||.+|+.. +..||+||..+.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 334568999998875 11 11 244579999999999999975 568999998765
No 43
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=6.3e-06 Score=73.29 Aligned_cols=48 Identities=23% Similarity=0.521 Sum_probs=39.1
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHh-cCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~-~~~~CP~Cr~~i~~~ 82 (249)
+..|.||+... ..++.+.|+|.||+-||+--.. ....|++||.+|...
T Consensus 7 ~~eC~IC~nt~---n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTG---NCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccC---CcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 56899999987 3346779999999999996654 566799999998654
No 44
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.91 E-value=3.5e-06 Score=78.41 Aligned_cols=47 Identities=34% Similarity=0.846 Sum_probs=37.4
Q ss_pred CCcCccccccccCCCC-ceeccCCCcchHHhHHHHHhcCCCCCCCcccCC
Q 025679 32 DDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 32 d~~C~ICle~~~~~~~-~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
-.+|+||||.|..+.. +..+.|.|.||..|+..|+. .+||+||....
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 5699999999964332 34458999999999999976 47999987665
No 45
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.91 E-value=1.6e-05 Score=73.23 Aligned_cols=50 Identities=24% Similarity=0.632 Sum_probs=42.0
Q ss_pred cCccccccccCCCCceeccCCCcchHHhHHHHHh--cCCCCCCCcccCCCCCcch
Q 025679 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQPISLKDATS 86 (249)
Q Consensus 34 ~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~--~~~~CP~Cr~~i~~~~~~~ 86 (249)
-|.||-+.= +.+++-+|||..|..||..|.. ....||.||..|+......
T Consensus 371 LCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vi 422 (563)
T KOG1785|consen 371 LCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVI 422 (563)
T ss_pred HHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccccee
Confidence 699999873 6688889999999999999984 3679999999998765543
No 46
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=8e-06 Score=74.79 Aligned_cols=48 Identities=27% Similarity=0.769 Sum_probs=34.2
Q ss_pred CcCccccccccCCCCceec-cCCCcchHHhHHHHHhc--C-CCCCCCcccCC
Q 025679 33 DACSICLEEFSESDPSTVT-SCKHEFHLQCVLEWCQR--S-SQCPMCWQPIS 80 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~~~-~C~H~Fc~~Ci~~wl~~--~-~~CP~Cr~~i~ 80 (249)
..|.||.+.+.....+.-+ .|||+||..|+..|++. + ..||+|+..+.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 3699995554333333333 49999999999999975 3 58999984443
No 47
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.84 E-value=4.1e-06 Score=75.35 Aligned_cols=49 Identities=29% Similarity=0.645 Sum_probs=42.6
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
-.+|.+|-.+|. +.-+++.|-|.||..||.++|.....||.|...+-..
T Consensus 15 ~itC~LC~GYli--DATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 15 HITCRLCGGYLI--DATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ceehhhccceee--cchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 569999999997 5567779999999999999999999999998776443
No 48
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=5.4e-06 Score=55.47 Aligned_cols=46 Identities=35% Similarity=0.753 Sum_probs=36.7
Q ss_pred CCcCccccccccCCCCceeccCCC-cchHHhHHHHHh-cCCCCCCCcccCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQ-RSSQCPMCWQPIS 80 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H-~Fc~~Ci~~wl~-~~~~CP~Cr~~i~ 80 (249)
+++|.||++.-. + .++--||| -.|+.|-.+.+. .+..||+||+++.
T Consensus 7 ~dECTICye~pv--d-sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPV--D-SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcc--h-HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 589999999864 2 34457999 689999887665 6789999999874
No 49
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.76 E-value=5.4e-06 Score=81.55 Aligned_cols=52 Identities=19% Similarity=0.477 Sum_probs=42.8
Q ss_pred CCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCC
Q 025679 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~ 81 (249)
+....|+||+..+.+.......+|+|.||..||..|...-.+||+||..|..
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 4456899999888754444456899999999999999999999999998754
No 50
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.8e-05 Score=71.92 Aligned_cols=47 Identities=32% Similarity=0.746 Sum_probs=39.7
Q ss_pred CCCcCccccccccCCCCceeccCCC-cchHHhHHHHHhcCCCCCCCcccCC
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H-~Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
.-..|.||+... ...+++||.| -.|..|-+..-...+.||+||+++.
T Consensus 289 ~gkeCVIClse~---rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 289 SGKECVICLSES---RDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred CCCeeEEEecCC---cceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 356899999997 4467789999 6999999887777889999999874
No 51
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.74 E-value=7.9e-06 Score=72.60 Aligned_cols=51 Identities=33% Similarity=0.816 Sum_probs=42.0
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhc-----------------------CCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----------------------SSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~-----------------------~~~CP~Cr~~i~~~ 82 (249)
.-.|.|||.-|.+++..+++.|.|+||+.||..+|.. ...||+||..|...
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 5689999999998777889999999999999987621 13599999988643
No 52
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.56 E-value=3.2e-05 Score=52.86 Aligned_cols=41 Identities=37% Similarity=0.829 Sum_probs=30.0
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhc--CCCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPM 74 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~--~~~CP~ 74 (249)
...|||.+..|. +|++-..|+|.|-...|..|+.+ ...||+
T Consensus 11 ~~~CPiT~~~~~--~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFE--DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-S--SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhh--CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 679999999997 78887899999999999999943 457998
No 53
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=4.5e-05 Score=71.29 Aligned_cols=56 Identities=25% Similarity=0.644 Sum_probs=45.6
Q ss_pred hhcCCCCCCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCC
Q 025679 23 VEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (249)
Q Consensus 23 v~~~~~~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~ 81 (249)
..+..+...+..|.||+..| .+++.++|||.||..||.+-+.....||.||..+..
T Consensus 75 ~s~~~~~~sef~c~vc~~~l---~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 75 LSGPEEIRSEFECCVCSRAL---YPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred hccCccccchhhhhhhHhhc---CCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 33444455688999999998 445556999999999999988888899999998875
No 54
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=4.3e-05 Score=67.23 Aligned_cols=48 Identities=25% Similarity=0.609 Sum_probs=40.1
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHh--cCCCCCCCcccCC
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQPIS 80 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~--~~~~CP~Cr~~i~ 80 (249)
.+.+|++|-+.-. .|.++.+|+|+||+.||..-+. .+..||.|-....
T Consensus 238 ~~~~C~~Cg~~Pt--iP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPT--IPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCC--CCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4789999999865 6777778999999999998764 4689999977654
No 55
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=7.6e-05 Score=68.93 Aligned_cols=51 Identities=29% Similarity=0.819 Sum_probs=39.2
Q ss_pred CCCcCccccccccCC--CCceeccCCCcchHHhHHHHHhc--CCCCCCCcccCCC
Q 025679 31 CDDACSICLEEFSES--DPSTVTSCKHEFHLQCVLEWCQR--SSQCPMCWQPISL 81 (249)
Q Consensus 31 ~d~~C~ICle~~~~~--~~~~~~~C~H~Fc~~Ci~~wl~~--~~~CP~Cr~~i~~ 81 (249)
+-.+|+||++.+... ..++.+.|+|.|...||++||.+ ...||.|...-..
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katk 57 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATK 57 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHH
Confidence 356899999988632 23566799999999999999953 3579999765443
No 56
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.44 E-value=8.8e-05 Score=62.49 Aligned_cols=49 Identities=24% Similarity=0.575 Sum_probs=41.1
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~ 83 (249)
-..|-||..+|. .++++.|||.||..|...-++....|-+|.+......
T Consensus 196 PF~C~iCKkdy~---spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~f 244 (259)
T COG5152 196 PFLCGICKKDYE---SPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGRF 244 (259)
T ss_pred ceeehhchhhcc---chhhhhcchhHHHHHHHHHhccCCcceecchhhccce
Confidence 558999999995 3456799999999999998899999999988765443
No 57
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=7.5e-05 Score=66.37 Aligned_cols=63 Identities=30% Similarity=0.490 Sum_probs=50.2
Q ss_pred CcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCCcchHHHHHHHHHhhh
Q 025679 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQERS 98 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~~~~~~~~~~~~~~~ 98 (249)
..|-||...|. . .+++.|+|.||..|...-+++...|.+|.+.+........+++..+...+.
T Consensus 242 f~c~icr~~f~--~-pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~~~akeL~~~L~~kks 304 (313)
T KOG1813|consen 242 FKCFICRKYFY--R-PVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSFNVAKELLVSLKLKKS 304 (313)
T ss_pred ccccccccccc--c-chhhcCCceeehhhhccccccCCcceecccccccccchHHHHHHHHHhhhh
Confidence 45999999995 4 456699999999999999999999999999887766666666655554443
No 58
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.41 E-value=6.8e-05 Score=70.32 Aligned_cols=52 Identities=31% Similarity=0.742 Sum_probs=43.6
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCCc
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~ 84 (249)
++..|+||...+. ++...+.|+|.||..|+..|+..+..||.|+..+.....
T Consensus 20 ~~l~C~~C~~vl~--~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 20 ENLLCPICMSVLR--DPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred ccccCcccccccc--CCCCCCCCCCcccccccchhhccCcCCcccccccchhhc
Confidence 4789999999996 555446999999999999999999999999887755433
No 59
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00026 Score=60.74 Aligned_cols=61 Identities=28% Similarity=0.563 Sum_probs=47.0
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhc--------CCCCCCCcccCCCCCcchHHHHHHH
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--------SSQCPMCWQPISLKDATSQELLEAV 93 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~--------~~~CP~Cr~~i~~~~~~~~~~~~~~ 93 (249)
+..|.+|--.+..++.+++ .|.|.||+.|+.+|-.. ...||.|..+|.........+.+++
T Consensus 50 ~pNC~LC~t~La~gdt~RL-vCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsPva~aL 118 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRL-VCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSPVAEAL 118 (299)
T ss_pred CCCCceeCCccccCcceee-hhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccchhHHHH
Confidence 6689999999987777665 89999999999999743 3579999998876655444444333
No 60
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.37 E-value=0.00015 Score=75.42 Aligned_cols=70 Identities=34% Similarity=0.655 Sum_probs=50.1
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcC----------CCCCCCcccCCCC---Ccc--hHHHHHHHHH
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----------SQCPMCWQPISLK---DAT--SQELLEAVEQ 95 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~----------~~CP~Cr~~i~~~---~~~--~~~~~~~~~~ 95 (249)
-|+.|.||+.+-....|...+.|+|.||+.|.+..|++. -.||+|+.+|... ++. ..++++.+..
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~LkDLldPiKel~edV~~ 3564 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVLKDLLDPIKELYEDVRR 3564 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 388999999876656777788999999999999877653 2699999988543 322 2345555555
Q ss_pred hhhhc
Q 025679 96 ERSIR 100 (249)
Q Consensus 96 ~~~~r 100 (249)
....|
T Consensus 3565 KA~MR 3569 (3738)
T KOG1428|consen 3565 KALMR 3569 (3738)
T ss_pred HHhhh
Confidence 44444
No 61
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00017 Score=65.53 Aligned_cols=54 Identities=20% Similarity=0.450 Sum_probs=45.5
Q ss_pred cCCCCCCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCC
Q 025679 25 GGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (249)
Q Consensus 25 ~~~~~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~ 81 (249)
+.+-+.+|+.|+||+.-- ...+..||+|.-|..||.+.+-..+.|-.|+..+..
T Consensus 415 ~~lp~sEd~lCpICyA~p---i~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 415 KDLPDSEDNLCPICYAGP---INAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CCCCCcccccCcceeccc---chhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 556677899999999764 335667999999999999999999999999987753
No 62
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.02 E-value=0.00023 Score=65.48 Aligned_cols=49 Identities=27% Similarity=0.620 Sum_probs=39.3
Q ss_pred CCCcCccccccccCC-CCceeccCCCcchHHhHHHHHhcC--CCCCCCcccC
Q 025679 31 CDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPI 79 (249)
Q Consensus 31 ~d~~C~ICle~~~~~-~~~~~~~C~H~Fc~~Ci~~wl~~~--~~CP~Cr~~i 79 (249)
-++.|..|-+.+... +....+||.|+||..|+.++|.++ .+||.||+..
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 367899999988643 235668999999999999999764 5899999543
No 63
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.86 E-value=0.00054 Score=65.36 Aligned_cols=49 Identities=24% Similarity=0.696 Sum_probs=39.6
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHhc-----CCCCCCCcccCCCC
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----SSQCPMCWQPISLK 82 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~-----~~~CP~Cr~~i~~~ 82 (249)
.+..|.+|-+.- +....+.|.|.||..||.+++.. +.+||.|...+...
T Consensus 535 ~~~~C~lc~d~a---ed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 535 GEVECGLCHDPA---EDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred CceeecccCChh---hhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 367899999986 44556799999999999999743 45899998887654
No 64
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.85 E-value=0.00096 Score=60.70 Aligned_cols=52 Identities=21% Similarity=0.465 Sum_probs=42.4
Q ss_pred cCCCCCCCCcCccccccccCCCCceeccCCCcchHHhHHHH--HhcCCCCCCCcccC
Q 025679 25 GGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEW--CQRSSQCPMCWQPI 79 (249)
Q Consensus 25 ~~~~~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~w--l~~~~~CP~Cr~~i 79 (249)
...+|+++..|.||-+.+. .+.++||+|..|.-|-... |...+.||+||..+
T Consensus 54 addtDEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 54 ADDTDEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 4456777889999999873 3566799999999998754 67889999999866
No 65
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.66 E-value=0.0016 Score=42.75 Aligned_cols=45 Identities=27% Similarity=0.649 Sum_probs=22.2
Q ss_pred CccccccccCCCC-ceeccCCCcchHHhHHHHHh-cCCCCCCCcccC
Q 025679 35 CSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPI 79 (249)
Q Consensus 35 C~ICle~~~~~~~-~~~~~C~H~Fc~~Ci~~wl~-~~~~CP~Cr~~i 79 (249)
|++|.+.+...+. ..-=+|++.+|..|....+. ....||-||+++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7899999843222 22226789999999888876 477899999876
No 66
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.58 E-value=0.0013 Score=59.62 Aligned_cols=54 Identities=20% Similarity=0.475 Sum_probs=38.1
Q ss_pred CCCCcCccccccccCCCC-ceeccCCCcchHHhHHHHHhc-CCCCCCCcccCCCCC
Q 025679 30 SCDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKD 83 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~-~~~~~C~H~Fc~~Ci~~wl~~-~~~CP~Cr~~i~~~~ 83 (249)
++|+.|++|++.+...+. ..--+||...|.-|....-+. +..||.||..+...+
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 347779999999864433 233478888888886554443 568999999887654
No 67
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.0029 Score=55.12 Aligned_cols=54 Identities=15% Similarity=0.358 Sum_probs=45.5
Q ss_pred CCcCccccccccCCCC-ceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCCcc
Q 025679 32 DDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDAT 85 (249)
Q Consensus 32 d~~C~ICle~~~~~~~-~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~~ 85 (249)
-..|+||.+.+.+.-+ +++-+|||+|+..|..+.+..-..||+|-.++...+..
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII 275 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence 4589999999986555 34558999999999999998889999999999877653
No 68
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0025 Score=52.95 Aligned_cols=51 Identities=33% Similarity=0.764 Sum_probs=36.5
Q ss_pred CCcCccccccccCCCCc----eeccCCCcchHHhHHHHHhc------C-----CCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPS----TVTSCKHEFHLQCVLEWCQR------S-----SQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~----~~~~C~H~Fc~~Ci~~wl~~------~-----~~CP~Cr~~i~~~ 82 (249)
-..|.||+..-.++... --..|+..||.-||..||+. + ..||+|..++..+
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 44688888765444221 22479999999999999954 1 2599999988665
No 69
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.28 E-value=0.0013 Score=57.05 Aligned_cols=45 Identities=31% Similarity=0.723 Sum_probs=33.7
Q ss_pred cCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCC
Q 025679 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (249)
Q Consensus 34 ~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~ 81 (249)
.|.-|.---. .++..++.|.|+||..|...-. ...||+|++.+..
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRI 49 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccCC--ccccccccceeee
Confidence 5776765443 6778999999999999975422 2389999998754
No 70
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.00072 Score=60.16 Aligned_cols=42 Identities=26% Similarity=0.631 Sum_probs=33.1
Q ss_pred CCcCccccccccCCCCceeccCCC-cchHHhHHHHHhcCCCCCCCcccCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H-~Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
+.-|.||++.. ...+.|+||| .-|.+|-... ..||+||+.|.
T Consensus 300 ~~LC~ICmDaP---~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAP---RDCVFLECGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCC---cceEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence 56899999986 3456779999 7899996543 48999998763
No 71
>PHA02862 5L protein; Provisional
Probab=96.20 E-value=0.0037 Score=50.25 Aligned_cols=47 Identities=23% Similarity=0.653 Sum_probs=35.0
Q ss_pred CCcCccccccccCCCCceeccCC-----CcchHHhHHHHHhc--CCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQR--SSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~-----H~Fc~~Ci~~wl~~--~~~CP~Cr~~i~~~ 82 (249)
++.|-||++.-. +. .-||. ...|..||.+|+.. ...|++|+.++..+
T Consensus 2 ~diCWIC~~~~~--e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVCD--ER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcCC--CC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 468999999853 22 34664 36899999999964 45799999887543
No 72
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.0044 Score=56.04 Aligned_cols=54 Identities=19% Similarity=0.525 Sum_probs=41.4
Q ss_pred cCCCCCCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCC
Q 025679 25 GGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 25 ~~~~~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
..+.......|+||+.... .+.++..-|-+||+.||..++...+.||+=..+..
T Consensus 293 ~e~l~~~~~~CpvClk~r~--Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 293 SELLPPDREVCPVCLKKRQ--NPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPAS 346 (357)
T ss_pred cccCCCccccChhHHhccC--CCceEEecceEEeHHHHHHHHHhcCCCCccCCcch
Confidence 3344445779999999875 45555567999999999999999999998655543
No 73
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.01 E-value=0.0066 Score=54.36 Aligned_cols=44 Identities=23% Similarity=0.560 Sum_probs=36.4
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHh-cCCCCCCCcc
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQ 77 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~-~~~~CP~Cr~ 77 (249)
.+.|+.|...+. .++....|+|.||..||..-|. .-+.||.|..
T Consensus 274 ~LkCplc~~Llr--np~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLR--NPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhh--CcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 379999999886 6666657999999999998775 4578999965
No 74
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.0038 Score=57.10 Aligned_cols=45 Identities=33% Similarity=0.707 Sum_probs=32.9
Q ss_pred CCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCC
Q 025679 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
...+-|.||++... ....++|||.-| |..-. +....||+||+.|.
T Consensus 303 ~~p~lcVVcl~e~~---~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPK---SAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCcc---ceeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 34678999999985 366679999866 65443 33345999998774
No 75
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.0089 Score=55.64 Aligned_cols=46 Identities=24% Similarity=0.418 Sum_probs=35.6
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhc--------CCCCCCCcc
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--------SSQCPMCWQ 77 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~--------~~~CP~Cr~ 77 (249)
-..|.||++...-....+.+||+|+||..|+..++.- .-.||-|+-
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 3479999999764466888999999999999999842 125877644
No 76
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.85 E-value=0.0064 Score=61.03 Aligned_cols=48 Identities=35% Similarity=0.862 Sum_probs=36.1
Q ss_pred CCcCccccccccCCCCc-eeccCCCcchHHhHHHHHhcC-------CCCCCCcccC
Q 025679 32 DDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQRS-------SQCPMCWQPI 79 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~-~~~~C~H~Fc~~Ci~~wl~~~-------~~CP~Cr~~i 79 (249)
..+|.||++.+....++ ....|.|+||+.||.+|-... -.||.|....
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 56899999999754443 224689999999999997532 2599998443
No 77
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.0098 Score=53.42 Aligned_cols=49 Identities=27% Similarity=0.654 Sum_probs=39.1
Q ss_pred CcCccccccccCCC---CceeccCCCcchHHhHHHHHhc-CCCCCCCcccCCC
Q 025679 33 DACSICLEEFSESD---PSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISL 81 (249)
Q Consensus 33 ~~C~ICle~~~~~~---~~~~~~C~H~Fc~~Ci~~wl~~-~~~CP~Cr~~i~~ 81 (249)
..|-||-++|...+ .++++.|||.||..|+.+.+.. ...||.||.....
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~ 56 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEI 56 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccC
Confidence 57999999998553 2567789999999999887764 4579999998633
No 78
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.82 E-value=0.0075 Score=53.53 Aligned_cols=54 Identities=22% Similarity=0.465 Sum_probs=41.4
Q ss_pred CCCCcCccccccccCCCC-ceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCCc
Q 025679 30 SCDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~-~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~ 84 (249)
.....|||+...|..... +.+.+|||+|...+|...- ....||+|-.+|...|.
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDI 165 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCE
Confidence 346789999999953333 4445999999999999873 45679999999876553
No 79
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=95.77 E-value=0.0055 Score=54.66 Aligned_cols=51 Identities=27% Similarity=0.465 Sum_probs=41.2
Q ss_pred CCCcCccccccccCCC-CceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 31 CDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~-~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
.+..||||.+.+..+. .+..++|+|..|..|+.+..-....||+|.+ +...
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~ 208 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDM 208 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHHH
Confidence 3556999999887553 3667899999999999998877799999988 5443
No 80
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.54 E-value=0.013 Score=47.94 Aligned_cols=46 Identities=28% Similarity=0.761 Sum_probs=34.1
Q ss_pred CCCcCccccccccCCCCceeccCCC-----cchHHhHHHHHhc--CCCCCCCcccCC
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKH-----EFHLQCVLEWCQR--SSQCPMCWQPIS 80 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H-----~Fc~~Ci~~wl~~--~~~CP~Cr~~i~ 80 (249)
.+..|-||.+... . -.-||.. ..|..||..|+.. ...|++|+..+.
T Consensus 7 ~~~~CRIC~~~~~--~--~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD--V--VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC--C--ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 3779999998853 1 1236654 5699999999974 457999988774
No 81
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.51 E-value=0.008 Score=39.31 Aligned_cols=40 Identities=30% Similarity=0.889 Sum_probs=26.0
Q ss_pred CccccccccCCCCceeccCCC-----cchHHhHHHHHh--cCCCCCCC
Q 025679 35 CSICLEEFSESDPSTVTSCKH-----EFHLQCVLEWCQ--RSSQCPMC 75 (249)
Q Consensus 35 C~ICle~~~~~~~~~~~~C~H-----~Fc~~Ci~~wl~--~~~~CP~C 75 (249)
|-||++.-..+. ..+.||.- ..|..||..|+. ....|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999876433 34457743 689999999996 45679887
No 82
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.34 E-value=0.0064 Score=45.93 Aligned_cols=34 Identities=24% Similarity=0.525 Sum_probs=27.3
Q ss_pred CCCCCcCccccccccCCCCceeccCCCcchHHhHH
Q 025679 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVL 63 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~ 63 (249)
...+..|++|-..+.. ....+.||+|.||..|+.
T Consensus 75 i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 3447789999999975 445566999999999974
No 83
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.19 E-value=0.0098 Score=47.41 Aligned_cols=45 Identities=18% Similarity=0.449 Sum_probs=31.8
Q ss_pred CCcCccccccccCCCCceeccCC------CcchHHhHHHHHhcCCCCCCCc
Q 025679 32 DDACSICLEEFSESDPSTVTSCK------HEFHLQCVLEWCQRSSQCPMCW 76 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~------H~Fc~~Ci~~wl~~~~~CP~Cr 76 (249)
..+|.||++.+.+.+-++.+.|+ |.||..|+.+|-.....=|.=|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR 76 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNR 76 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCccc
Confidence 67899999999763345555675 5799999999964444434433
No 84
>PHA03096 p28-like protein; Provisional
Probab=95.16 E-value=0.013 Score=52.74 Aligned_cols=45 Identities=27% Similarity=0.584 Sum_probs=31.6
Q ss_pred CcCccccccccCCC-----CceeccCCCcchHHhHHHHHhc---CCCCCCCcc
Q 025679 33 DACSICLEEFSESD-----PSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQ 77 (249)
Q Consensus 33 ~~C~ICle~~~~~~-----~~~~~~C~H~Fc~~Ci~~wl~~---~~~CP~Cr~ 77 (249)
..|.||++...... -..+..|.|.||..||..|-.. ...||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 57999999876321 1244589999999999999743 234555544
No 85
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=94.87 E-value=0.009 Score=38.96 Aligned_cols=42 Identities=29% Similarity=0.715 Sum_probs=25.4
Q ss_pred CccccccccCCCCceeccCC-CcchHHhHHHHHhcCCCCCCCcccCCC
Q 025679 35 CSICLEEFSESDPSTVTSCK-HEFHLQCVLEWCQRSSQCPMCWQPISL 81 (249)
Q Consensus 35 C~ICle~~~~~~~~~~~~C~-H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~ 81 (249)
|--|.-..+ .+..|. |..|..||...+..+..||+|+.++..
T Consensus 5 CKsCWf~~k-----~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 5 CKSCWFANK-----GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp --SS-S--S-----SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred ChhhhhcCC-----CeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 555654421 234675 899999999999999999999998864
No 86
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.80 E-value=0.016 Score=39.09 Aligned_cols=47 Identities=28% Similarity=0.592 Sum_probs=33.7
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~ 83 (249)
+..|..|...- ..-.+++|+|..|..|..- ++-+.||+|..++...+
T Consensus 7 ~~~~~~~~~~~---~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVG---TKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccc---cccccccccceeeccccCh--hhccCCCCCCCcccCCC
Confidence 44677776653 3345679999999999544 45578999999886543
No 87
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.63 E-value=0.015 Score=37.30 Aligned_cols=39 Identities=26% Similarity=0.773 Sum_probs=22.1
Q ss_pred CccccccccCCCCceec--cCCCcchHHhHHHHHhcCC--CCCCC
Q 025679 35 CSICLEEFSESDPSTVT--SCKHEFHLQCVLEWCQRSS--QCPMC 75 (249)
Q Consensus 35 C~ICle~~~~~~~~~~~--~C~H~Fc~~Ci~~wl~~~~--~CP~C 75 (249)
|.+|.+.+..+ ..-. .|+-.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G--~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQG--QRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSS--EE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeee--ccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67888887643 2332 5888999999999997654 69987
No 88
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.015 Score=52.32 Aligned_cols=42 Identities=26% Similarity=0.617 Sum_probs=29.4
Q ss_pred cCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccC
Q 025679 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79 (249)
Q Consensus 34 ~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i 79 (249)
.|.-|--.+. ..-++++|+|+||++|... ..-+.||.|-..+
T Consensus 92 fCd~Cd~PI~--IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIA--IYGRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eecccCCcce--eeecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 5666665553 3346689999999999654 3356899996544
No 89
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.58 E-value=0.0094 Score=59.59 Aligned_cols=47 Identities=32% Similarity=0.783 Sum_probs=38.2
Q ss_pred CcCccccccccCCCCceeccCCCcchHHhHHHHHhcC--CCCCCCcccCCCCC
Q 025679 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPISLKD 83 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~--~~CP~Cr~~i~~~~ 83 (249)
..|.||++ . +...++.|+|.||..|+...++.. ..||.||..+..+.
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 68999999 3 667888999999999999888642 36999998775443
No 90
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=0.024 Score=57.05 Aligned_cols=42 Identities=26% Similarity=0.685 Sum_probs=34.4
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCccc
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~ 78 (249)
...|.+|-..+. -|.+--.|+|.||.+|+. .....||.|+..
T Consensus 840 ~skCs~C~~~Ld--lP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 840 VSKCSACEGTLD--LPFVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeeecccCCccc--cceeeeecccHHHHHhhc---cCcccCCccchh
Confidence 358999999885 666666899999999998 456789999773
No 91
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.17 E-value=0.014 Score=61.09 Aligned_cols=43 Identities=33% Similarity=0.750 Sum_probs=36.8
Q ss_pred CcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcc
Q 025679 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~ 77 (249)
..|.||++.+.. ...+..|+|.||..|+..|+..+..||+|+.
T Consensus 1154 ~~c~ic~dil~~--~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1154 FVCEICLDILRN--QGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cchHHHHHHHHh--cCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 389999999862 2344589999999999999999999999974
No 92
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.04 E-value=0.057 Score=44.23 Aligned_cols=33 Identities=24% Similarity=0.510 Sum_probs=22.4
Q ss_pred CCCcCccccccccCCCCceeccC------------CC-cchHHhHHHHH
Q 025679 31 CDDACSICLEEFSESDPSTVTSC------------KH-EFHLQCVLEWC 66 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C------------~H-~Fc~~Ci~~wl 66 (249)
+|.+|+||+|.-- ..++|-| +. .-|..||.++.
T Consensus 1 ed~~CpICme~PH---NAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 1 EDVTCPICMEHPH---NAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred CCccCceeccCCC---ceEEEEeccccCCccccccCCccchhHHHHHHH
Confidence 3779999999863 3445444 22 35788999875
No 93
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=93.43 E-value=0.064 Score=53.91 Aligned_cols=54 Identities=30% Similarity=0.711 Sum_probs=40.4
Q ss_pred CCCCCcCccccccccCCCCceeccCCC-----cchHHhHHHHHhc--CCCCCCCcccCCCCC
Q 025679 29 DSCDDACSICLEEFSESDPSTVTSCKH-----EFHLQCVLEWCQR--SSQCPMCWQPISLKD 83 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~~~~~~~C~H-----~Fc~~Ci~~wl~~--~~~CP~Cr~~i~~~~ 83 (249)
.+++..|-||..+-..+++.. -||+. ..|..||.+|+.- ...|-+|+.++..++
T Consensus 9 N~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred CccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 345689999998766555543 37765 4899999999974 457999998886554
No 94
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=0.11 Score=48.34 Aligned_cols=46 Identities=20% Similarity=0.418 Sum_probs=38.4
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcC---CCCCCCcc
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS---SQCPMCWQ 77 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~---~~CP~Cr~ 77 (249)
-.+|||=.+.-.+.+|+..+.|||+.+..-|.+..... ..||+|-.
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 45899988887777888899999999999999987643 57999943
No 95
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=92.55 E-value=0.069 Score=50.29 Aligned_cols=34 Identities=18% Similarity=0.541 Sum_probs=27.7
Q ss_pred CCCCcCccccccccCCCCceeccCCCcchHHhHHHHH
Q 025679 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC 66 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl 66 (249)
++++.|+||...|. ++ .+++|+|..|..|....+
T Consensus 2 eeelkc~vc~~f~~--ep-iil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYR--EP-IILPCSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhcc--Cc-eEeecccHHHHHHHHhhc
Confidence 35889999999985 44 566999999999987654
No 96
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.26 E-value=0.16 Score=45.46 Aligned_cols=49 Identities=22% Similarity=0.468 Sum_probs=35.0
Q ss_pred cCccccccccCCCCc--eeccCCCcchHHhHHHHHh-cCCCCCCCcccCCCC
Q 025679 34 ACSICLEEFSESDPS--TVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLK 82 (249)
Q Consensus 34 ~C~ICle~~~~~~~~--~~~~C~H~Fc~~Ci~~wl~-~~~~CP~Cr~~i~~~ 82 (249)
.|++|....-....+ .+-+|+|..|..|....+. ....||.|-..+-..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 599998754322222 2338999999999999886 457899997766433
No 97
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=0.044 Score=45.04 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=26.1
Q ss_pred CCCCCcCccccccccCCCCceeccCCCcchH
Q 025679 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHL 59 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~ 59 (249)
....-+|.||||++..++.+..+||..+||.
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 3445689999999998888888899999985
No 98
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.06 E-value=0.12 Score=46.83 Aligned_cols=44 Identities=30% Similarity=0.620 Sum_probs=34.1
Q ss_pred CCCCcCccccccccCCCCceeccC--CCcchHHhHHHHHhcCCCCCCCcccCC
Q 025679 30 SCDDACSICLEEFSESDPSTVTSC--KHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~~C--~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
.+-+.||||.+.+. .|+. .| ||..|..|-. +....||.||.+|.
T Consensus 46 ~~lleCPvC~~~l~--~Pi~--QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLS--PPIF--QCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCc--ccce--ecCCCcEehhhhhh---hhcccCCccccccc
Confidence 33568999999995 4444 56 7999999865 45678999999887
No 99
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=91.93 E-value=0.05 Score=47.44 Aligned_cols=50 Identities=24% Similarity=0.500 Sum_probs=35.6
Q ss_pred CCCCcCccccccccCCCCceec--c-CCCcchHHhHHHHHhcC-CCCC--CCcccC
Q 025679 30 SCDDACSICLEEFSESDPSTVT--S-CKHEFHLQCVLEWCQRS-SQCP--MCWQPI 79 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~--~-C~H~Fc~~Ci~~wl~~~-~~CP--~Cr~~i 79 (249)
..|..||||..+.-..-.+.++ | |-|..|..|....+... ..|| -|-+.+
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 3467999999865433334332 4 99999999999998754 5899 685443
No 100
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.82 E-value=0.081 Score=53.67 Aligned_cols=35 Identities=29% Similarity=0.604 Sum_probs=29.6
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHH
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC 66 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl 66 (249)
-++.|.+|...+.. .+-.+-+|||.||..||.+..
T Consensus 816 p~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhc-CcceeeeccchHHHHHHHHHH
Confidence 37799999998864 666777999999999999865
No 101
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.40 E-value=0.018 Score=53.33 Aligned_cols=51 Identities=22% Similarity=0.514 Sum_probs=41.2
Q ss_pred CCcCccccccccCC-CCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~-~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
-..|.||.+.++.. +.+..+.|+|.+|..||.+||.....||.|+..+...
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 34799999988632 2345568999999999999999988999999887543
No 102
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=91.37 E-value=0.17 Score=40.28 Aligned_cols=50 Identities=20% Similarity=0.383 Sum_probs=36.9
Q ss_pred CCCcCccccccccCCCCcee---ccCCCcchHHhHHHHHhc---CCCCCCCcccCCCC
Q 025679 31 CDDACSICLEEFSESDPSTV---TSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLK 82 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~---~~C~H~Fc~~Ci~~wl~~---~~~CP~Cr~~i~~~ 82 (249)
---+|.||.|...+ .-.+ .-||-..|..|-...|+. ...||+|+..++..
T Consensus 79 ~lYeCnIC~etS~e--e~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAE--ERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccch--hhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 34589999998753 2222 148999999999877753 56899999988654
No 103
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=90.31 E-value=0.29 Score=32.32 Aligned_cols=43 Identities=23% Similarity=0.597 Sum_probs=22.2
Q ss_pred CcCccccccccCCCCceeccCCCcchHHhHHHHHh---c--CCCCCCCccc
Q 025679 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---R--SSQCPMCWQP 78 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~---~--~~~CP~Cr~~ 78 (249)
+.|+|....+. .|++...|.|.-|++ +..|+. . .-.||+|.++
T Consensus 3 L~CPls~~~i~--~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIR--IPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-S--SEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEE--eCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 57999999886 788888999985533 334442 2 2369999763
No 104
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=90.19 E-value=0.18 Score=46.74 Aligned_cols=32 Identities=25% Similarity=0.794 Sum_probs=23.9
Q ss_pred CCCcchHHhHHHHHhc-------------CCCCCCCcccCCCCCc
Q 025679 53 CKHEFHLQCVLEWCQR-------------SSQCPMCWQPISLKDA 84 (249)
Q Consensus 53 C~H~Fc~~Ci~~wl~~-------------~~~CP~Cr~~i~~~~~ 84 (249)
|....|..|+-+|+.. +-.||+||+.+...|.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 4456799999999842 2359999999876553
No 105
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=89.75 E-value=0.21 Score=50.23 Aligned_cols=49 Identities=14% Similarity=0.248 Sum_probs=33.7
Q ss_pred CCCcCccccccccCCCC-ceec---cCCCcchHHhHHHHHhc------CCCCCCCcccC
Q 025679 31 CDDACSICLEEFSESDP-STVT---SCKHEFHLQCVLEWCQR------SSQCPMCWQPI 79 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~-~~~~---~C~H~Fc~~Ci~~wl~~------~~~CP~Cr~~i 79 (249)
..++|.||.-.+.+.+. .-+. .|+|.||..||..|+.+ .-.|++|...|
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 35688888888764211 1222 49999999999999854 23578886655
No 106
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.15 E-value=0.34 Score=42.70 Aligned_cols=52 Identities=21% Similarity=0.563 Sum_probs=36.0
Q ss_pred CCCcCccccccccCCCCc-eeccC-----CCcchHHhHHHHHhcC--------CCCCCCcccCCCC
Q 025679 31 CDDACSICLEEFSESDPS-TVTSC-----KHEFHLQCVLEWCQRS--------SQCPMCWQPISLK 82 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~-~~~~C-----~H~Fc~~Ci~~wl~~~--------~~CP~Cr~~i~~~ 82 (249)
.|..|-||+..=++.... -+-|| .|..|..||..|+..+ -.||-|+..+...
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 377999999875432222 23366 3679999999999432 2599999877543
No 107
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.84 E-value=0.22 Score=44.64 Aligned_cols=32 Identities=25% Similarity=0.680 Sum_probs=24.7
Q ss_pred CCCcchHHhHHHHHhc-------------CCCCCCCcccCCCCCc
Q 025679 53 CKHEFHLQCVLEWCQR-------------SSQCPMCWQPISLKDA 84 (249)
Q Consensus 53 C~H~Fc~~Ci~~wl~~-------------~~~CP~Cr~~i~~~~~ 84 (249)
|....|..||.+|+.. +-+||+||+.+...|.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 5667899999999732 3579999999876553
No 108
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.65 E-value=0.18 Score=45.05 Aligned_cols=36 Identities=25% Similarity=0.646 Sum_probs=27.5
Q ss_pred CCCCcCccccccccCCCCceeccC----CCcchHHhHHHHHhc
Q 025679 30 SCDDACSICLEEFSESDPSTVTSC----KHEFHLQCVLEWCQR 68 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~~C----~H~Fc~~Ci~~wl~~ 68 (249)
..-+.|.+|.|.+.+ . ....| .|.||+.|-++.++.
T Consensus 266 ~apLcCTLC~ERLED--T-HFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 266 SAPLCCTLCHERLED--T-HFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CCceeehhhhhhhcc--C-ceeecCCCcccceecccCHHHHHh
Confidence 345899999999963 3 23356 799999999998864
No 109
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.63 E-value=0.22 Score=48.82 Aligned_cols=46 Identities=30% Similarity=0.844 Sum_probs=38.4
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCCc
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~ 84 (249)
.+.|.||++.+ ..+.++|. |..|+.+|+..+..||+|+..+...+.
T Consensus 479 ~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 479 NDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDF 524 (543)
T ss_pred cCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccc
Confidence 67899999997 24566788 899999999999999999988866543
No 110
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=88.60 E-value=0.11 Score=51.57 Aligned_cols=46 Identities=30% Similarity=0.702 Sum_probs=36.1
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhc---CCCCCCCcccCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPIS 80 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~---~~~CP~Cr~~i~ 80 (249)
+.+|+||+..+. .+ +.+.|.|.||..|+..-+.. ...||+|+..+.
T Consensus 21 ~lEc~ic~~~~~--~p-~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 21 ILECPICLEHVK--EP-SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hccCCceeEEee--cc-chhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 679999999986 44 56699999999998865542 457999986553
No 111
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.59 E-value=0.27 Score=49.32 Aligned_cols=41 Identities=27% Similarity=0.687 Sum_probs=30.8
Q ss_pred CcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCC
Q 025679 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPM 74 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~ 74 (249)
..|.||--.+. +-......|+|..|..|..+|+.....||.
T Consensus 1029 ~~C~~C~l~V~-gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVR-GSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeeEeeEee-ccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 34666655443 233455689999999999999999999986
No 112
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.44 E-value=0.19 Score=43.14 Aligned_cols=38 Identities=26% Similarity=0.574 Sum_probs=28.7
Q ss_pred CccccccccCCCCceeccCCC-cchHHhHHHHHhcCCCCCCCcccC
Q 025679 35 CSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQRSSQCPMCWQPI 79 (249)
Q Consensus 35 C~ICle~~~~~~~~~~~~C~H-~Fc~~Ci~~wl~~~~~CP~Cr~~i 79 (249)
|-+|.+.- ..+.++||.| .+|..|-.. -..||+|+...
T Consensus 161 Cr~C~~~~---~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGERE---ATVLLLPCRHLCLCGICDES----LRICPICRSPK 199 (207)
T ss_pred ceecCcCC---ceEEeecccceEeccccccc----CccCCCCcChh
Confidence 88888863 4477789999 689989543 44699997654
No 113
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=86.83 E-value=0.31 Score=41.75 Aligned_cols=47 Identities=23% Similarity=0.543 Sum_probs=37.6
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
-..|.+|...+. ...+.-.|+-.+|..|+.++++....||.|.--|+
T Consensus 181 lk~Cn~Ch~LvI--qg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~ 227 (235)
T KOG4718|consen 181 LKNCNLCHCLVI--QGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWT 227 (235)
T ss_pred HHHHhHhHHHhh--eeeccCcccchhhhHHHHHHhcccCcCCchhcccC
Confidence 357999999876 44555577778999999999999999999955443
No 114
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.71 E-value=0.25 Score=46.34 Aligned_cols=37 Identities=32% Similarity=0.646 Sum_probs=26.9
Q ss_pred CCcCccccccccCC-CCceeccCCCcchHHhHHHHHhc
Q 025679 32 DDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQR 68 (249)
Q Consensus 32 d~~C~ICle~~~~~-~~~~~~~C~H~Fc~~Ci~~wl~~ 68 (249)
..+|.||+...... .-..+..|+|.||..|+.+.++.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 56899999433322 22235689999999999999864
No 115
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=85.62 E-value=0.93 Score=32.75 Aligned_cols=52 Identities=19% Similarity=0.427 Sum_probs=20.7
Q ss_pred CCCCCcCccccccccCCCC--cee--ccCCCcchHHhHH-HHHhcCCCCCCCcccCC
Q 025679 29 DSCDDACSICLEEFSESDP--STV--TSCKHEFHLQCVL-EWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~~--~~~--~~C~H~Fc~~Ci~-~wl~~~~~CP~Cr~~i~ 80 (249)
.-....|.||-+.+..... +.+ -.|+--.|..|.. +....++.||.|+..+.
T Consensus 6 ~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 6 NLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp --SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred hcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 3345689999998863221 222 3677788999986 33456789999998775
No 116
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=84.58 E-value=1.3 Score=29.87 Aligned_cols=32 Identities=25% Similarity=0.647 Sum_probs=25.7
Q ss_pred CCcCccccccccCCCCcee-ccCCCcchHHhHH
Q 025679 32 DDACSICLEEFSESDPSTV-TSCKHEFHLQCVL 63 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~-~~C~H~Fc~~Ci~ 63 (249)
...|++|-+.|++++++++ ..|+-.+|..|..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 4579999999976666555 5799999999953
No 117
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.95 E-value=0.47 Score=46.84 Aligned_cols=40 Identities=28% Similarity=0.546 Sum_probs=28.9
Q ss_pred CCcCccccccccCCC-CceeccCCCcchHHhHHHHHhcCCCCC
Q 025679 32 DDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRSSQCP 73 (249)
Q Consensus 32 d~~C~ICle~~~~~~-~~~~~~C~H~Fc~~Ci~~wl~~~~~CP 73 (249)
-..|.||+..|.... .++.+-|||..|.+|+..... .+||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC
Confidence 357999988776432 244568999999999987544 4677
No 118
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=81.01 E-value=1.2 Score=40.58 Aligned_cols=46 Identities=22% Similarity=0.430 Sum_probs=36.0
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHhc---CCCCCCCc
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCW 76 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~---~~~CP~Cr 76 (249)
.-..||+-.+.-.+..+++.+.|||+.-..-+....+. .+.||+|-
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 34589987777666688889999999999988876654 35799994
No 119
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=80.19 E-value=1.3 Score=40.38 Aligned_cols=49 Identities=24% Similarity=0.592 Sum_probs=36.7
Q ss_pred CcCccccccccCCCC-ceeccCCCcchHHhHHHHHhcCCCCCCCcccCCC
Q 025679 33 DACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (249)
Q Consensus 33 ~~C~ICle~~~~~~~-~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~ 81 (249)
..|+||.+.+...+. ..-.+|++..|+.|+..-......||.||+.+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 589999998743222 2223678888999998888888999999976643
No 120
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=80.16 E-value=1.4 Score=40.28 Aligned_cols=58 Identities=28% Similarity=0.439 Sum_probs=40.2
Q ss_pred hHHhhhcCCCC-CCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCc
Q 025679 19 AAAFVEGGIQD-SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (249)
Q Consensus 19 ~~~~v~~~~~~-~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr 76 (249)
+.+|++..... ..+..|..|.+....+...+.-.|++.||..|-.-.-+.-..||-|.
T Consensus 316 L~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 316 LKPFVEIPETEYNGSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CcchhhccccccCCCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 34555544332 23556999988776555566778999999999655445566899995
No 121
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.91 E-value=1.3 Score=42.37 Aligned_cols=37 Identities=24% Similarity=0.521 Sum_probs=30.1
Q ss_pred CCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhc
Q 025679 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR 68 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~ 68 (249)
..+..|-||.+.+.. .+..+.|+|.||..|+..++.+
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 446799999999852 4566799999999999998854
No 122
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.68 E-value=2.1 Score=37.85 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=50.4
Q ss_pred CCCCCchhhhhhHHhhhcCCCCC----------------CCCcCccccccccCCCC-ceeccCCCcchHHhHHHHHhcCC
Q 025679 8 EGKKPEDHMTSAAAFVEGGIQDS----------------CDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRSS 70 (249)
Q Consensus 8 ~~~~~~~~~~~~~~~v~~~~~~~----------------~d~~C~ICle~~~~~~~-~~~~~C~H~Fc~~Ci~~wl~~~~ 70 (249)
.-.+...+|.++..++..-+..+ -...|+|---.|..... ..+-.|||+|-..-|.+. ...
T Consensus 71 ~~pksaShIKslKDvveLklt~n~~~~gD~~~~~~D~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas 148 (293)
T KOG3113|consen 71 SLPKSASHIKSLKDVVELKLTLNPAFEGDKGNKHDDTQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KAS 148 (293)
T ss_pred cCCcchhhhcchhhHhheecccCcccccccCccccccccceeecccccceecceEEEEEEeccceeccHHHHHHh--hhc
Confidence 44455667777777765443221 13468887777752222 344589999999888774 367
Q ss_pred CCCCCcccCCCCCcc
Q 025679 71 QCPMCWQPISLKDAT 85 (249)
Q Consensus 71 ~CP~Cr~~i~~~~~~ 85 (249)
.|++|...+...+..
T Consensus 149 ~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 149 VCHVCGAAYQEDDVI 163 (293)
T ss_pred cccccCCcccccCeE
Confidence 899999998877643
No 123
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=79.41 E-value=1.3 Score=39.59 Aligned_cols=49 Identities=27% Similarity=0.593 Sum_probs=35.0
Q ss_pred CCcCccccccccCCCC-ceeccCC-----CcchHHhHHHHHh--cCCCCCCCcccCC
Q 025679 32 DDACSICLEEFSESDP-STVTSCK-----HEFHLQCVLEWCQ--RSSQCPMCWQPIS 80 (249)
Q Consensus 32 d~~C~ICle~~~~~~~-~~~~~C~-----H~Fc~~Ci~~wl~--~~~~CP~Cr~~i~ 80 (249)
+..|-||......... ..+.+|. ...|..|+..|+. ....|-+|+..+.
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 3689999997642211 2345764 3579999999997 5668999987654
No 124
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.26 E-value=1.3 Score=38.92 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=27.4
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHh
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ 67 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~ 67 (249)
=+.|..||..+. + +++++=||.|+..||.+++.
T Consensus 43 FdcCsLtLqPc~--d-Pvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 43 FDCCSLTLQPCR--D-PVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cceeeeeccccc--C-CccCCCCeeeeHHHHHHHHH
Confidence 468999999985 4 45668999999999999864
No 125
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=78.27 E-value=0.86 Score=44.83 Aligned_cols=27 Identities=30% Similarity=0.781 Sum_probs=19.7
Q ss_pred ceeccCCCcchHHhHHHHHhcCCCCCCCcc
Q 025679 48 STVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (249)
Q Consensus 48 ~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~ 77 (249)
.+...|++.||..|+. .++..||.|-.
T Consensus 532 ~rC~~C~avfH~~C~~---r~s~~CPrC~R 558 (580)
T KOG1829|consen 532 RRCSTCLAVFHKKCLR---RKSPCCPRCER 558 (580)
T ss_pred eeHHHHHHHHHHHHHh---ccCCCCCchHH
Confidence 3456799999999954 34555999943
No 126
>PLN02189 cellulose synthase
Probab=76.76 E-value=2.3 Score=44.46 Aligned_cols=53 Identities=21% Similarity=0.447 Sum_probs=36.1
Q ss_pred CCCCCCcCccccccccCC---CCc-eeccCCCcchHHhHH-HHHhcCCCCCCCcccCC
Q 025679 28 QDSCDDACSICLEEFSES---DPS-TVTSCKHEFHLQCVL-EWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 28 ~~~~d~~C~ICle~~~~~---~~~-~~~~C~H~Fc~~Ci~-~wl~~~~~CP~Cr~~i~ 80 (249)
+......|.||-+.+... ++- ..-.|+--.|..|.+ +.-+.++.||.|+..++
T Consensus 30 ~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 30 RNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 333455899999997632 222 223477779999984 22345788999999886
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=75.63 E-value=2 Score=43.26 Aligned_cols=40 Identities=20% Similarity=0.408 Sum_probs=31.2
Q ss_pred cCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCC
Q 025679 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPM 74 (249)
Q Consensus 34 ~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~ 74 (249)
.|.+|-..+. +..+..--|+|.-|..|+.+|+.....||.
T Consensus 781 ~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred Cceeecceee-eeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 6888877764 233344579999999999999999888876
No 128
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.57 E-value=0.92 Score=40.96 Aligned_cols=47 Identities=30% Similarity=0.688 Sum_probs=38.3
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
++.|.||...+. -+-+.-.|.|.||..|...|......||.|+....
T Consensus 105 ~~~~~~~~g~l~--vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 105 HDICYICYGKLT--VPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred ccceeeeeeeEE--ecccccCceeeeeecCCchhhhhhhccchhhcCcC
Confidence 678999999885 23333469999999999999999999999987654
No 129
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.79 E-value=1.8 Score=40.69 Aligned_cols=42 Identities=26% Similarity=0.620 Sum_probs=30.6
Q ss_pred CcCccccccccCCC---CceeccCCCcchHHhHHHHHhcCCCCCCC
Q 025679 33 DACSICLEEFSESD---PSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (249)
Q Consensus 33 ~~C~ICle~~~~~~---~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~C 75 (249)
..|++|.-.+.... .++.. |+|.||+.|...|...+..|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 46888887654221 24444 99999999999998887777655
No 130
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=73.49 E-value=3.3 Score=43.54 Aligned_cols=49 Identities=20% Similarity=0.541 Sum_probs=35.1
Q ss_pred CCcCccccccccCC---CC-ceeccCCCcchHHhHH-HHHhcCCCCCCCcccCC
Q 025679 32 DDACSICLEEFSES---DP-STVTSCKHEFHLQCVL-EWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 32 d~~C~ICle~~~~~---~~-~~~~~C~H~Fc~~Ci~-~wl~~~~~CP~Cr~~i~ 80 (249)
...|.||-+++... ++ +..-.|+--.|..|.+ +.-+.++.||.|+..++
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 45899999997632 22 2223577779999985 33456789999998875
No 131
>PLN02436 cellulose synthase A
Probab=72.74 E-value=3.4 Score=43.42 Aligned_cols=53 Identities=23% Similarity=0.514 Sum_probs=35.8
Q ss_pred CCCCCCcCccccccccC---CCCce-eccCCCcchHHhHH-HHHhcCCCCCCCcccCC
Q 025679 28 QDSCDDACSICLEEFSE---SDPST-VTSCKHEFHLQCVL-EWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 28 ~~~~d~~C~ICle~~~~---~~~~~-~~~C~H~Fc~~Ci~-~wl~~~~~CP~Cr~~i~ 80 (249)
+.-....|.||-+++.. ++.-+ .-.|+--.|..|.+ +.-+.++.||.|+..++
T Consensus 32 ~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 32 QELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 33335589999999752 23222 23477779999984 22345788999999886
No 132
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=71.37 E-value=1.7 Score=28.91 Aligned_cols=42 Identities=24% Similarity=0.594 Sum_probs=21.3
Q ss_pred CccccccccCC-------CCceeccCCCcchHHhHHHHHhcCCCCCCCc
Q 025679 35 CSICLEEFSES-------DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (249)
Q Consensus 35 C~ICle~~~~~-------~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr 76 (249)
|.-|+..|... ....-..|++.||..|=.-.-+.-..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 55677766532 1123357999999999543334556799883
No 133
>PLN02400 cellulose synthase
Probab=71.16 E-value=3.2 Score=43.69 Aligned_cols=54 Identities=19% Similarity=0.442 Sum_probs=36.9
Q ss_pred CCCCCCCcCccccccccCC---CC-ceeccCCCcchHHhHH-HHHhcCCCCCCCcccCC
Q 025679 27 IQDSCDDACSICLEEFSES---DP-STVTSCKHEFHLQCVL-EWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 27 ~~~~~d~~C~ICle~~~~~---~~-~~~~~C~H~Fc~~Ci~-~wl~~~~~CP~Cr~~i~ 80 (249)
++.-....|.||-+++... ++ +-.-.|+--.|..|.+ +.-+.++.||-|+..++
T Consensus 31 ~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 31 LKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 3333455899999997632 22 2223677779999984 33345788999998885
No 134
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=69.86 E-value=4.4 Score=35.47 Aligned_cols=60 Identities=22% Similarity=0.361 Sum_probs=41.7
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhc--CCCCCC--CcccCCCCCcchHHHHHHH
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPM--CWQPISLKDATSQELLEAV 93 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~--~~~CP~--Cr~~i~~~~~~~~~~~~~~ 93 (249)
+..|+|-+..+. -++.-..|.|.|-..-|...++. ...||. |-+.+...++.-...++.-
T Consensus 189 ~nrCpitl~p~~--~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~R 252 (275)
T COG5627 189 SNRCPITLNPDF--YPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEKR 252 (275)
T ss_pred cccCCcccCcch--hHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHHH
Confidence 779999777664 55555689999999999999985 456775 6555554444444444433
No 135
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=68.81 E-value=3 Score=29.15 Aligned_cols=12 Identities=25% Similarity=0.861 Sum_probs=8.7
Q ss_pred cchHHhHHHHHh
Q 025679 56 EFHLQCVLEWCQ 67 (249)
Q Consensus 56 ~Fc~~Ci~~wl~ 67 (249)
-||..||.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999984
No 136
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.10 E-value=5.6 Score=30.86 Aligned_cols=45 Identities=22% Similarity=0.475 Sum_probs=34.2
Q ss_pred CCcCccccccccCC-----------CCceeccCCCcchHHhHHHHHhcCCCCCCCc
Q 025679 32 DDACSICLEEFSES-----------DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (249)
Q Consensus 32 d~~C~ICle~~~~~-----------~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr 76 (249)
...|.-|+..|... ....-..|++.||..|=.-|-+.-..||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 45699999988531 1123468999999999888878878899995
No 137
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.09 E-value=3.2 Score=42.07 Aligned_cols=45 Identities=31% Similarity=0.647 Sum_probs=32.4
Q ss_pred CCCCcCccccccccCC----CCceeccCCCcchHHhHHHHHhcCCCCCCC
Q 025679 30 SCDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~----~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~C 75 (249)
..+..|..|++..... +.+.+..|+|.||..|+..-..++. |-.|
T Consensus 782 ~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 782 SVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred eehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 3466899999987532 2356679999999999987655444 5555
No 138
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=63.73 E-value=4.9 Score=34.29 Aligned_cols=41 Identities=29% Similarity=0.713 Sum_probs=26.7
Q ss_pred CCcCcccccc-----ccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcc
Q 025679 32 DDACSICLEE-----FSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (249)
Q Consensus 32 d~~C~ICle~-----~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~ 77 (249)
...|-||-.. |..+.......|+-.||..|..+ ..||.|..
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-----~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-----KSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-----CCCCCcHh
Confidence 3477788742 21112234457999999999752 67999943
No 139
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=61.78 E-value=16 Score=36.71 Aligned_cols=58 Identities=22% Similarity=0.388 Sum_probs=35.5
Q ss_pred CcCccccccccCCCCceeccCCCcchHHhHH-HHH-hcC-----CCCCCCcccCCCCCcchHHHHHHHHH
Q 025679 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVL-EWC-QRS-----SQCPMCWQPISLKDATSQELLEAVEQ 95 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~-~wl-~~~-----~~CP~Cr~~i~~~~~~~~~~~~~~~~ 95 (249)
+.|+|+.-.+. -+++-..|+|. .|.. .|+ +.+ -.||+|.+...+..+.....+..+..
T Consensus 307 L~CPl~~~Rm~--~P~r~~~CkHl---QcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~ 371 (636)
T KOG2169|consen 307 LNCPLSKMRMS--LPARGHTCKHL---QCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQ 371 (636)
T ss_pred ecCCcccceee--cCCcccccccc---eecchhhhHHhccCCCeeeCccCCccccccchhhhHHHHHHHh
Confidence 46777776654 34444455554 5555 343 211 25999999999888887765554443
No 141
>PLN02195 cellulose synthase A
Probab=60.74 E-value=10 Score=39.75 Aligned_cols=50 Identities=20% Similarity=0.416 Sum_probs=35.3
Q ss_pred CCcCccccccccCC---CC-ceeccCCCcchHHhHH-HHHhcCCCCCCCcccCCC
Q 025679 32 DDACSICLEEFSES---DP-STVTSCKHEFHLQCVL-EWCQRSSQCPMCWQPISL 81 (249)
Q Consensus 32 d~~C~ICle~~~~~---~~-~~~~~C~H~Fc~~Ci~-~wl~~~~~CP~Cr~~i~~ 81 (249)
...|.||-+.+... ++ +..-.|+--.|..|.+ +--+.++.||.|+..++.
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 45899999987633 22 2234688889999984 222457789999999983
No 142
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=59.12 E-value=3.1 Score=39.01 Aligned_cols=33 Identities=33% Similarity=0.697 Sum_probs=0.0
Q ss_pred CCceeccCCCcchHHhHHHHHh------cCCCCCCCcccCCC
Q 025679 46 DPSTVTSCKHEFHLQCVLEWCQ------RSSQCPMCWQPISL 81 (249)
Q Consensus 46 ~~~~~~~C~H~Fc~~Ci~~wl~------~~~~CP~Cr~~i~~ 81 (249)
++-+.+.|||++.+. .|-. ....||+||..-..
T Consensus 302 qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~~ 340 (416)
T PF04710_consen 302 QPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGPY 340 (416)
T ss_dssp ------------------------------------------
T ss_pred Cceeeccccceeeec---ccccccccccccccCCCccccCCc
Confidence 455668999987654 4642 24679999876543
No 143
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=58.22 E-value=7.7 Score=40.82 Aligned_cols=49 Identities=20% Similarity=0.504 Sum_probs=34.5
Q ss_pred CCcCccccccccCC---CC-ceeccCCCcchHHhHH-HHHhcCCCCCCCcccCC
Q 025679 32 DDACSICLEEFSES---DP-STVTSCKHEFHLQCVL-EWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 32 d~~C~ICle~~~~~---~~-~~~~~C~H~Fc~~Ci~-~wl~~~~~CP~Cr~~i~ 80 (249)
...|.||-+.+... ++ +..-.|+--.|..|.+ +.-+.++.||.|+..+.
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 45799999997632 22 2223577779999984 22345788999998886
No 144
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=58.10 E-value=0.89 Score=40.85 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=22.2
Q ss_pred CCCCcCccccccccCCCCceecc-----CCCcchHHhHHHHHhcCCCCCCCccc
Q 025679 30 SCDDACSICLEEFSESDPSTVTS-----CKHEFHLQCVLEWCQRSSQCPMCWQP 78 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~~-----C~H~Fc~~Ci~~wl~~~~~CP~Cr~~ 78 (249)
+....||||-..-.-+ .+.. -.+.+|..|-..|-.....||.|-..
T Consensus 170 w~~g~CPvCGs~P~~s---~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLS---VLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp TT-SS-TTT---EEEE---EEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred ccCCcCCCCCCcCceE---EEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 3457999998764211 1111 25679999999998888899999543
No 145
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=57.92 E-value=0.82 Score=32.43 Aligned_cols=41 Identities=24% Similarity=0.636 Sum_probs=21.9
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
+..||.|...|. ... ++.+|..|-.. +.....||-|..++.
T Consensus 1 e~~CP~C~~~L~------~~~-~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELE------WQG-GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEE------EET-TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CCcCCCCCCccE------EeC-CEEECcccccc-ceecccCCCcccHHH
Confidence 357999999874 112 67788888654 334557999988774
No 146
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=57.53 E-value=6.4 Score=35.09 Aligned_cols=48 Identities=31% Similarity=0.585 Sum_probs=33.2
Q ss_pred CcCccccccccCCCCcee----ccCCCcchHHhHHHHH-hc--------CCCCCCCcccCC
Q 025679 33 DACSICLEEFSESDPSTV----TSCKHEFHLQCVLEWC-QR--------SSQCPMCWQPIS 80 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~~----~~C~H~Fc~~Ci~~wl-~~--------~~~CP~Cr~~i~ 80 (249)
..|-||.+.+...+...+ ..|.-.+|..||-..+ .. ...||.|++.+.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 589999999843333322 2478889999999844 22 246999988554
No 147
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=54.06 E-value=9.4 Score=22.43 Aligned_cols=37 Identities=19% Similarity=0.607 Sum_probs=23.9
Q ss_pred cCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccC
Q 025679 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79 (249)
Q Consensus 34 ~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i 79 (249)
.|..|.+.+.... ..+..=+..||..|+ .|..|...|
T Consensus 1 ~C~~C~~~i~~~~-~~~~~~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGE-LVLRALGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCc-EEEEeCCccccccCC--------CCcccCCcC
Confidence 3778888875321 233334677888874 788887765
No 148
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=53.82 E-value=4.5 Score=26.04 Aligned_cols=43 Identities=26% Similarity=0.529 Sum_probs=26.1
Q ss_pred cCccccccccCCCCceeccCCCcchHHhHHHHHh------cCCCCCCCc
Q 025679 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ------RSSQCPMCW 76 (249)
Q Consensus 34 ~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~------~~~~CP~Cr 76 (249)
.|.||......+.-+.--.|+..||..|+..-.. ..-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4888988433222233347888999999865332 134577664
No 149
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=51.72 E-value=6.2 Score=37.09 Aligned_cols=32 Identities=19% Similarity=0.562 Sum_probs=23.4
Q ss_pred CcCccccccccCCCCceeccCCCcchHHhHHHH
Q 025679 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEW 65 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~w 65 (249)
..|+||+-.+-..... +..|....|..|+.+.
T Consensus 75 ~ecpicflyyps~~n~-~rcC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 75 TECPICFLYYPSAKNL-VRCCSETICGECFAPF 106 (482)
T ss_pred ccCceeeeecccccch-hhhhccchhhhheecc
Confidence 3799999987532222 2368889999999875
No 150
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=51.12 E-value=12 Score=34.30 Aligned_cols=50 Identities=22% Similarity=0.550 Sum_probs=32.0
Q ss_pred CCcCcccccccc--------------C-CCC-ceeccCCCcchHHhHHHHHhc---------CCCCCCCcccCCC
Q 025679 32 DDACSICLEEFS--------------E-SDP-STVTSCKHEFHLQCVLEWCQR---------SSQCPMCWQPISL 81 (249)
Q Consensus 32 d~~C~ICle~~~--------------~-~~~-~~~~~C~H~Fc~~Ci~~wl~~---------~~~CP~Cr~~i~~ 81 (249)
+..|+||+..-. + +-+ -...||||.--.+-..-|.+- +..||.|-..+..
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 678999987521 1 111 123589997777777667542 2469999776643
No 151
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.30 E-value=14 Score=27.76 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=28.9
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHh
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ 67 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~ 67 (249)
+..|.||-..+..++..+.++ .-..|+.|+..-..
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~ 40 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKR 40 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHh
Confidence 457999999999888888877 66789999987543
No 152
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=47.44 E-value=6.2 Score=37.06 Aligned_cols=51 Identities=24% Similarity=0.604 Sum_probs=0.0
Q ss_pred CCcCcccccccc--------------CCCC--ceeccCCCcchHHhHHHHHhc---------CCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFS--------------ESDP--STVTSCKHEFHLQCVLEWCQR---------SSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~--------------~~~~--~~~~~C~H~Fc~~Ci~~wl~~---------~~~CP~Cr~~i~~~ 82 (249)
+.+|+||+..-. +..+ ...-||||.--.+...-|.+. +..||.|-..|...
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~ 403 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGE 403 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCC
Confidence 679999996421 1111 123499998888888888643 24699998877643
No 153
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.17 E-value=12 Score=27.96 Aligned_cols=12 Identities=25% Similarity=0.852 Sum_probs=10.7
Q ss_pred cchHHhHHHHHh
Q 025679 56 EFHLQCVLEWCQ 67 (249)
Q Consensus 56 ~Fc~~Ci~~wl~ 67 (249)
-||..||..|+.
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 154
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.87 E-value=16 Score=36.70 Aligned_cols=43 Identities=30% Similarity=0.645 Sum_probs=31.9
Q ss_pred cCccccccccCCCCceeccCCC-cchHHhHHHHHh--c----CCCCCCCcccC
Q 025679 34 ACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQ--R----SSQCPMCWQPI 79 (249)
Q Consensus 34 ~C~ICle~~~~~~~~~~~~C~H-~Fc~~Ci~~wl~--~----~~~CP~Cr~~i 79 (249)
.|.||-..+. -...-.|+| ..|..|...... . ...||+|+..+
T Consensus 2 ~c~ic~~s~~---~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSPD---FVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREV 51 (669)
T ss_pred CcceeecCcc---ccccccccccccchhhhhhhhhhcccccccccCcccccce
Confidence 5999998763 233448999 899999987652 3 35689999855
No 155
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=44.00 E-value=5.1 Score=36.50 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=30.7
Q ss_pred CCcCccccccccCCCCcee----ccCCCcchHHhHHHHHhcCCCCCCCccc
Q 025679 32 DDACSICLEEFSESDPSTV----TSCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~----~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~ 78 (249)
...||||-..-..+. ++. --=.+.+|..|-..|-.....||.|-..
T Consensus 184 ~~~CPvCGs~P~~s~-~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASM-VRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhh-hcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 449999987642110 111 0123568888999999889999999753
No 156
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=42.85 E-value=36 Score=25.91 Aligned_cols=24 Identities=21% Similarity=0.526 Sum_probs=18.5
Q ss_pred CCcchHHhHHHHHhc---------CCCCCCCcc
Q 025679 54 KHEFHLQCVLEWCQR---------SSQCPMCWQ 77 (249)
Q Consensus 54 ~H~Fc~~Ci~~wl~~---------~~~CP~Cr~ 77 (249)
.-.||..||..++.. .-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 667999999988732 235999986
No 157
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.82 E-value=7.8 Score=31.08 Aligned_cols=26 Identities=27% Similarity=0.607 Sum_probs=16.1
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHH
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLE 64 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~ 64 (249)
|.+|.||+..-. .--|||. |..|-..
T Consensus 65 datC~IC~KTKF------ADG~GH~-C~YCq~r 90 (169)
T KOG3799|consen 65 DATCGICHKTKF------ADGCGHN-CSYCQTR 90 (169)
T ss_pred Ccchhhhhhccc------ccccCcc-cchhhhh
Confidence 789999997532 2257774 3344443
No 158
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.80 E-value=7.8 Score=37.03 Aligned_cols=37 Identities=27% Similarity=0.574 Sum_probs=26.2
Q ss_pred CCcCccccccccCCCC---cee--ccCCCcchHHhHHHHHhc
Q 025679 32 DDACSICLEEFSESDP---STV--TSCKHEFHLQCVLEWCQR 68 (249)
Q Consensus 32 d~~C~ICle~~~~~~~---~~~--~~C~H~Fc~~Ci~~wl~~ 68 (249)
...||.|...+....- ... .+|+|.||+.|+..|...
T Consensus 226 tk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 226 TKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred CccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 4459999998863321 122 249999999998888765
No 159
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=41.34 E-value=8.8 Score=35.06 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=31.3
Q ss_pred CCCcCccccccccCCCCcee-cc--CCCcchHHhHHHHHhcCCCCCCCcc
Q 025679 31 CDDACSICLEEFSESDPSTV-TS--CKHEFHLQCVLEWCQRSSQCPMCWQ 77 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~-~~--C~H~Fc~~Ci~~wl~~~~~CP~Cr~ 77 (249)
....||||-..-..+- +.. .. =.+.+|..|-..|-.....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~-v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSV-VQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhhe-eeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 3679999987632110 000 01 2456888999999988999999975
No 160
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=40.80 E-value=15 Score=32.53 Aligned_cols=41 Identities=15% Similarity=0.421 Sum_probs=33.0
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhc--CCCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPM 74 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~--~~~CP~ 74 (249)
+..|||=...+. .|+.-..|+|+|-..-|...+.. .-.||+
T Consensus 176 s~rdPis~~~I~--nPviSkkC~HvydrDsI~~~l~~~~~i~CPv 218 (262)
T KOG2979|consen 176 SNRDPISKKPIV--NPVISKKCGHVYDRDSIMQILCDEITIRCPV 218 (262)
T ss_pred cccCchhhhhhh--chhhhcCcCcchhhhhHHHHhccCceeeccc
Confidence 668999777765 66777799999999999999876 446887
No 161
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=40.44 E-value=53 Score=22.27 Aligned_cols=44 Identities=18% Similarity=0.544 Sum_probs=30.7
Q ss_pred cCccccccccCCC-CceeccCCC--cchHHhHHHHHhcCCCCCCCcccCCC
Q 025679 34 ACSICLEEFSESD-PSTVTSCKH--EFHLQCVLEWCQRSSQCPMCWQPISL 81 (249)
Q Consensus 34 ~C~ICle~~~~~~-~~~~~~C~H--~Fc~~Ci~~wl~~~~~CP~Cr~~i~~ 81 (249)
.|-.|-.++..+. ...+ |.+ .||..|....| ...||.|...|..
T Consensus 7 nCE~C~~dLp~~s~~A~I--CSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYI--CSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceE--EeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 5777777775433 2333 543 69999998877 5689999877754
No 162
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=40.13 E-value=13 Score=24.32 Aligned_cols=40 Identities=20% Similarity=0.546 Sum_probs=26.3
Q ss_pred CccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCC
Q 025679 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (249)
Q Consensus 35 C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~ 83 (249)
|..|...+.. ....+..-+..||..|+ .|-.|...|....
T Consensus 1 C~~C~~~I~~-~~~~~~~~~~~~H~~Cf--------~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYG-TEIVIKAMGKFWHPECF--------KCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESS-SSEEEEETTEEEETTTS--------BETTTTCBTTTSS
T ss_pred CCCCCCCccC-cEEEEEeCCcEEEcccc--------ccCCCCCccCCCe
Confidence 5667777753 22333356778888875 7888888876553
No 163
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=38.28 E-value=17 Score=28.08 Aligned_cols=46 Identities=20% Similarity=0.504 Sum_probs=27.5
Q ss_pred CCCcCccccccccC--CCCceeccCCCcchHHhHHHHHhcC--CCCCCCcc
Q 025679 31 CDDACSICLEEFSE--SDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQ 77 (249)
Q Consensus 31 ~d~~C~ICle~~~~--~~~~~~~~C~H~Fc~~Ci~~wl~~~--~~CP~Cr~ 77 (249)
.+..|.+|...|.. +.......|+|.+|..|-.. .... -.|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 57799999987642 22355568999999988544 1111 14766644
No 165
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=38.10 E-value=6.3 Score=26.31 Aligned_cols=32 Identities=22% Similarity=0.577 Sum_probs=20.0
Q ss_pred cCc--cccccccCC----CC-ceeccCCCcchHHhHHHH
Q 025679 34 ACS--ICLEEFSES----DP-STVTSCKHEFHLQCVLEW 65 (249)
Q Consensus 34 ~C~--ICle~~~~~----~~-~~~~~C~H~Fc~~Ci~~w 65 (249)
-|+ -|...+... .. +....|++.||+.|...|
T Consensus 20 ~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 20 WCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcC
Confidence 477 565544321 22 222368999999998887
No 166
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=37.70 E-value=12 Score=37.57 Aligned_cols=52 Identities=27% Similarity=0.562 Sum_probs=33.9
Q ss_pred CCCCCCcCccccccccCCCCc-----e--eccCCCcchHHhHHHH--H--------hcCCCCCCCcccC
Q 025679 28 QDSCDDACSICLEEFSESDPS-----T--VTSCKHEFHLQCVLEW--C--------QRSSQCPMCWQPI 79 (249)
Q Consensus 28 ~~~~d~~C~ICle~~~~~~~~-----~--~~~C~H~Fc~~Ci~~w--l--------~~~~~CP~Cr~~i 79 (249)
+|-...+|.||-|.-...+.. . .-.|+..||..|.... | ..-+.|-+|+..|
T Consensus 113 ~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hf 181 (900)
T KOG0956|consen 113 HDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHF 181 (900)
T ss_pred hhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHH
Confidence 555678999999985433221 1 1247778999998754 1 1235699998665
No 167
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=37.07 E-value=13 Score=25.57 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=17.8
Q ss_pred CCCCcCccccccccCCC-CceeccCCCcchHHhHHHH
Q 025679 30 SCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEW 65 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~-~~~~~~C~H~Fc~~Ci~~w 65 (249)
.+...|.+|...|..-. .-.--.||+.||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 34568999999995321 2233579999999887543
No 168
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=36.34 E-value=20 Score=23.60 Aligned_cols=36 Identities=28% Similarity=0.589 Sum_probs=20.6
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHh--cCCCCCCCcc
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQ 77 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~--~~~~CP~Cr~ 77 (249)
...||.|.+.|. ... +...|...... +...||+|..
T Consensus 2 ~f~CP~C~~~~~---~~~-------L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGFS---ESS-------LVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCccC---HHH-------HHHHHHhHCcCCCCCccCCCchh
Confidence 468999998653 111 23344444332 2357999975
No 169
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=35.36 E-value=25 Score=26.76 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=26.6
Q ss_pred CcCccccccccCCCCceeccCCCcchHHhHHHHHh
Q 025679 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ 67 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~ 67 (249)
..|.||-..+..|+-.+.++= -..|+.|+..-..
T Consensus 3 WkC~iCg~~I~~gqlFTF~~k-G~VH~~C~~~~~~ 36 (101)
T PF09943_consen 3 WKCYICGKPIYEGQLFTFTKK-GPVHYECFREKAS 36 (101)
T ss_pred eEEEecCCeeeecceEEEecC-CcEeHHHHHHHHh
Confidence 479999999987777666554 6789999987543
No 170
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.34 E-value=7.9 Score=34.58 Aligned_cols=47 Identities=26% Similarity=0.507 Sum_probs=35.6
Q ss_pred CCcCccccccccCC---CCceecc--------CCCcchHHhHHHHHhc-CCCCCCCccc
Q 025679 32 DDACSICLEEFSES---DPSTVTS--------CKHEFHLQCVLEWCQR-SSQCPMCWQP 78 (249)
Q Consensus 32 d~~C~ICle~~~~~---~~~~~~~--------C~H~Fc~~Ci~~wl~~-~~~CP~Cr~~ 78 (249)
+..|.||...+... ....++. |+|..|..|+..-+.. ...||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 46799999988722 1234455 9999999999998754 3689999874
No 171
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=34.28 E-value=10 Score=38.82 Aligned_cols=45 Identities=18% Similarity=0.546 Sum_probs=30.3
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHh------cCCCCCCCcc
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ------RSSQCPMCWQ 77 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~------~~~~CP~Cr~ 77 (249)
...|..|.-.+.. ..-+...|++.||..|+..|.- ....|++||.
T Consensus 229 ~~mC~~C~~tlfn-~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~ 279 (889)
T KOG1356|consen 229 REMCDRCETTLFN-IHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWL 279 (889)
T ss_pred chhhhhhcccccc-eeEEccccCCeeeecchhhccccchHhHhhhhhhHHHH
Confidence 4578888876541 1234568999999999999951 1234666654
No 172
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=34.01 E-value=12 Score=26.99 Aligned_cols=35 Identities=23% Similarity=0.496 Sum_probs=23.5
Q ss_pred CCCCCCcCccccccccCCCCc--eeccCCCcchHHhHHH
Q 025679 28 QDSCDDACSICLEEFSESDPS--TVTSCKHEFHLQCVLE 64 (249)
Q Consensus 28 ~~~~d~~C~ICle~~~~~~~~--~~~~C~H~Fc~~Ci~~ 64 (249)
.......|.+|..... -.+ ....|.-.||..|...
T Consensus 32 ~~~~~~~C~~C~~~~G--a~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 32 KRRRKLKCSICKKKGG--ACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred HHHhCCCCcCCCCCCC--eEEEEeCCCCCcEEChHHHcc
Confidence 3344679999997732 222 2236888999999765
No 173
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=32.88 E-value=26 Score=29.92 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=24.4
Q ss_pred HHhHHHHHh-cCCCCCCCcccCCCCCcchHHHHHHHH
Q 025679 59 LQCVLEWCQ-RSSQCPMCWQPISLKDATSQELLEAVE 94 (249)
Q Consensus 59 ~~Ci~~wl~-~~~~CP~Cr~~i~~~~~~~~~~~~~~~ 94 (249)
..||.+--. ...-||+||-.+...|.....+++.+.
T Consensus 97 ktCIrkn~~~~gnpCPICRDeyL~~DyRN~~LlEQF~ 133 (239)
T KOG4021|consen 97 KTCIRKNGRFLGNPCPICRDEYLYFDYRNPGLLEQFL 133 (239)
T ss_pred hHHHhhcCeecCCCCCccccceEEEeccCHHHHHHHh
Confidence 346655332 345699999998888877776666544
No 174
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=32.48 E-value=42 Score=30.05 Aligned_cols=41 Identities=27% Similarity=0.536 Sum_probs=23.8
Q ss_pred CcCccccccccCCCCce-eccCC-CcchHHhHHHHH-hcCCCCC
Q 025679 33 DACSICLEEFSESDPST-VTSCK-HEFHLQCVLEWC-QRSSQCP 73 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~-~~~C~-H~Fc~~Ci~~wl-~~~~~CP 73 (249)
..|.||++.-..+.+.. ++-=+ -.-|..|..+|- ..+..||
T Consensus 31 sfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 31 SFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP 74 (285)
T ss_pred eecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC
Confidence 35777777654443321 11111 136789999994 5677888
No 175
>PLN02248 cellulose synthase-like protein
Probab=31.56 E-value=42 Score=35.86 Aligned_cols=32 Identities=22% Similarity=0.641 Sum_probs=27.7
Q ss_pred cCCCcchHHhHHHHHhcCCCCCCCcccCCCCC
Q 025679 52 SCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (249)
Q Consensus 52 ~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~ 83 (249)
.|+...|..|...-+.....||-|+.+++..+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYKVTD 180 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCcccccccc
Confidence 57889999999999988889999999986544
No 176
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=29.73 E-value=9.7 Score=34.41 Aligned_cols=35 Identities=26% Similarity=0.618 Sum_probs=23.5
Q ss_pred cCccccccccCCCCceeccCCCcchHHhHHHHHhc
Q 025679 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR 68 (249)
Q Consensus 34 ~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~ 68 (249)
.|.||++.|..+.....+.|...||..|+..|+..
T Consensus 216 vC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (288)
T KOG1729|consen 216 VCDICFEELEKGARGDREDSLPVFHGKCYPNWLTT 250 (288)
T ss_pred ecHHHHHHHhcccccchhhcccccccccccccccc
Confidence 78888888853333444456557888888887754
No 177
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=28.77 E-value=42 Score=21.83 Aligned_cols=34 Identities=18% Similarity=0.405 Sum_probs=23.3
Q ss_pred CcCccccccccCCC-CceeccCCCcchHHhHHHHH
Q 025679 33 DACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWC 66 (249)
Q Consensus 33 ~~C~ICle~~~~~~-~~~~~~C~H~Fc~~Ci~~wl 66 (249)
..|.+|-..|..-. ......||+.||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 46899988775321 23335799999999986553
No 178
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.49 E-value=32 Score=34.64 Aligned_cols=41 Identities=22% Similarity=0.454 Sum_probs=26.8
Q ss_pred CcCcccccccc-CCCCceeccCCCcchHHhHHHHHhcCCCCCCCc
Q 025679 33 DACSICLEEFS-ESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (249)
Q Consensus 33 ~~C~ICle~~~-~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr 76 (249)
.+|-+|...=. ..+-...+.|+-.||..| |+.-...||+|-
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC~ 696 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVCG 696 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCcccC
Confidence 36888876532 112234457888898888 555566899993
No 179
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=28.26 E-value=45 Score=24.96 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=22.9
Q ss_pred CCCcCccccccccCCCCceec--cCCCcchHHhHHHH
Q 025679 31 CDDACSICLEEFSESDPSTVT--SCKHEFHLQCVLEW 65 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~--~C~H~Fc~~Ci~~w 65 (249)
....|.||..... -.+.-. .|...||..|...+
T Consensus 54 ~~~~C~iC~~~~G--~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKSGG--ACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCCCc--eeEEcCCCCCCcCCCHHHHHHC
Confidence 4779999998742 223332 37779999998653
No 180
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=28.15 E-value=54 Score=30.54 Aligned_cols=51 Identities=24% Similarity=0.520 Sum_probs=28.0
Q ss_pred CCCCCCCcCccccccccCCCCceec---cCCCcch--------HHhHHHHH-----hcCCCCCCCccc
Q 025679 27 IQDSCDDACSICLEEFSESDPSTVT---SCKHEFH--------LQCVLEWC-----QRSSQCPMCWQP 78 (249)
Q Consensus 27 ~~~~~d~~C~ICle~~~~~~~~~~~---~C~H~Fc--------~~Ci~~wl-----~~~~~CP~Cr~~ 78 (249)
+.++.+..|++|-+... +-..-++ .|+-+|- +.|+..-- ...+.||.||..
T Consensus 10 ydedl~ElCPVCGDkVS-GYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQ 76 (475)
T KOG4218|consen 10 YDEDLGELCPVCGDKVS-GYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQ 76 (475)
T ss_pred CccccccccccccCccc-cceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHH
Confidence 34555789999998764 3333333 4444442 33433211 113569999864
No 181
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=27.96 E-value=15 Score=20.84 Aligned_cols=9 Identities=33% Similarity=0.763 Sum_probs=5.1
Q ss_pred cCccccccc
Q 025679 34 ACSICLEEF 42 (249)
Q Consensus 34 ~C~ICle~~ 42 (249)
.||-|...+
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 466666554
No 182
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=27.45 E-value=47 Score=29.06 Aligned_cols=27 Identities=19% Similarity=0.492 Sum_probs=20.1
Q ss_pred cchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 56 EFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 56 ~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
..|..|....-..-..||+|+..--.+
T Consensus 250 K~ClsChqqIHRNAPiCPlCKaKsRSr 276 (286)
T KOG4451|consen 250 KVCLSCHQQIHRNAPICPLCKAKSRSR 276 (286)
T ss_pred hHHHHHHHHHhcCCCCCcchhhccccC
Confidence 467888877767778999998765433
No 183
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.40 E-value=35 Score=34.20 Aligned_cols=52 Identities=21% Similarity=0.430 Sum_probs=35.2
Q ss_pred cCCCCCCC-CcCccccccccCCC-CceeccCCCcchHHhHHHHHhc--------CCCCCCCc
Q 025679 25 GGIQDSCD-DACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQR--------SSQCPMCW 76 (249)
Q Consensus 25 ~~~~~~~d-~~C~ICle~~~~~~-~~~~~~C~H~Fc~~Ci~~wl~~--------~~~CP~Cr 76 (249)
....+|.| ..|.+|.-.|..-. .-....||-+||..|...-+.. .++|=.|-
T Consensus 157 ~~~pdW~D~~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C~ 218 (634)
T KOG1818|consen 157 ETAPDWIDSEECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSCY 218 (634)
T ss_pred cCCcccccccccceeeeeeeeccccccccccchhhccCccccccCcccccccccceehhhhH
Confidence 33445555 89999999986322 2344589999999998776521 24687783
No 184
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=27.05 E-value=21 Score=23.53 Aligned_cols=12 Identities=33% Similarity=1.049 Sum_probs=6.5
Q ss_pred CCCCCcccCCCC
Q 025679 71 QCPMCWQPISLK 82 (249)
Q Consensus 71 ~CP~Cr~~i~~~ 82 (249)
.||+|..+|...
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 899999998654
No 185
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=25.39 E-value=42 Score=22.07 Aligned_cols=9 Identities=44% Similarity=1.335 Sum_probs=6.3
Q ss_pred hcCCCCCCC
Q 025679 67 QRSSQCPMC 75 (249)
Q Consensus 67 ~~~~~CP~C 75 (249)
.....||.|
T Consensus 47 ~~~~~CP~C 55 (55)
T PF14311_consen 47 RRGKGCPYC 55 (55)
T ss_pred cCCCCCCCC
Confidence 445679988
No 186
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.01 E-value=14 Score=37.22 Aligned_cols=46 Identities=20% Similarity=0.436 Sum_probs=30.7
Q ss_pred CCCCCCcCccccccccCCCCceeccCCCcchHHhHHHH--HhcCCCCCCC
Q 025679 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEW--CQRSSQCPMC 75 (249)
Q Consensus 28 ~~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~w--l~~~~~CP~C 75 (249)
.+..++.|.||+.... ....+..|.|.+|..|.... +.....|+.|
T Consensus 74 ~~~~e~~~~if~~d~~--~y~~~~~~~~~~C~~C~~~~~~~~~~~~~~~c 121 (669)
T KOG2231|consen 74 FDEHEDTCVIFFADKL--TYTKLEACLHHSCHICDRRFRALYNKKECLHC 121 (669)
T ss_pred cccccceeeeeecccc--HHHHHHHHHhhhcCccccchhhhcccCCCccc
Confidence 3445788999965532 22344589999999998765 3445667777
No 187
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=24.83 E-value=47 Score=29.15 Aligned_cols=25 Identities=20% Similarity=0.534 Sum_probs=16.3
Q ss_pred CcCccccccccCCCCceeccCCCcc
Q 025679 33 DACSICLEEFSESDPSTVTSCKHEF 57 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~~~~C~H~F 57 (249)
..||||...|........-..+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 4799999999643332222457777
No 188
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.66 E-value=60 Score=28.34 Aligned_cols=27 Identities=15% Similarity=0.395 Sum_probs=19.9
Q ss_pred cchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 56 EFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 56 ~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
.-|..|-...-+.-..||+|+..--.+
T Consensus 195 K~C~sC~qqIHRNAPiCPlCK~KsRSr 221 (230)
T PF10146_consen 195 KTCQSCHQQIHRNAPICPLCKAKSRSR 221 (230)
T ss_pred chhHhHHHHHhcCCCCCcccccccccC
Confidence 357888777667778999998765433
No 189
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=24.61 E-value=43 Score=19.16 Aligned_cols=29 Identities=17% Similarity=0.497 Sum_probs=9.7
Q ss_pred cCccccccccCCCCceeccCCCcchHHhH
Q 025679 34 ACSICLEEFSESDPSTVTSCKHEFHLQCV 62 (249)
Q Consensus 34 ~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci 62 (249)
.|.+|...+.......-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 47888887642122334678888888875
No 190
>PF14353 CpXC: CpXC protein
Probab=23.64 E-value=78 Score=24.47 Aligned_cols=46 Identities=24% Similarity=0.309 Sum_probs=23.9
Q ss_pred CcCccccccccCCCCceeccCCCcchHHhHHHHHhc---CCCCCCCcccCCC
Q 025679 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISL 81 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~---~~~CP~Cr~~i~~ 81 (249)
.+||-|...|... ..+.-.-.....-....+.. ..+||.|...+..
T Consensus 2 itCP~C~~~~~~~---v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFE---VWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEE---EEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 4788888887521 11111112223333344433 2479999887643
No 191
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=23.61 E-value=86 Score=23.19 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=18.3
Q ss_pred HHHHHhcCCCCCCCcccCCCCCc
Q 025679 62 VLEWCQRSSQCPMCWQPISLKDA 84 (249)
Q Consensus 62 i~~wl~~~~~CP~Cr~~i~~~~~ 84 (249)
|..|+-.+..|..|++++....+
T Consensus 51 i~S~l~lrGrCr~C~~~I~~~y~ 73 (92)
T PF06750_consen 51 ILSYLLLRGRCRYCGAPIPPRYP 73 (92)
T ss_pred HHHHHHhCCCCcccCCCCChHHH
Confidence 55788888999999999875543
No 192
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=23.38 E-value=47 Score=34.32 Aligned_cols=34 Identities=21% Similarity=0.492 Sum_probs=25.0
Q ss_pred CcCccccccccCC------CCceeccCCCcchHHhHHHHH
Q 025679 33 DACSICLEEFSES------DPSTVTSCKHEFHLQCVLEWC 66 (249)
Q Consensus 33 ~~C~ICle~~~~~------~~~~~~~C~H~Fc~~Ci~~wl 66 (249)
+.|.+|...|..- ..-..-.||..||..|-..+.
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs 500 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRA 500 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcc
Confidence 5799999999521 123345799999999987654
No 193
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=22.92 E-value=43 Score=34.00 Aligned_cols=51 Identities=29% Similarity=0.580 Sum_probs=33.5
Q ss_pred CCcCccccccccCCCC-------ceeccCCCcc--------------------hHHhHHHHHh---c-----CCCCCCCc
Q 025679 32 DDACSICLEEFSESDP-------STVTSCKHEF--------------------HLQCVLEWCQ---R-----SSQCPMCW 76 (249)
Q Consensus 32 d~~C~ICle~~~~~~~-------~~~~~C~H~F--------------------c~~Ci~~wl~---~-----~~~CP~Cr 76 (249)
--+|.-|++++.+... ...|.||..| |..|..++-. + -..||.|.
T Consensus 101 ~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~CG 180 (750)
T COG0068 101 AATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKCG 180 (750)
T ss_pred hhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcccC
Confidence 4589999999874322 2345676654 8899888753 1 13599997
Q ss_pred ccCCCC
Q 025679 77 QPISLK 82 (249)
Q Consensus 77 ~~i~~~ 82 (249)
-.+...
T Consensus 181 P~~~l~ 186 (750)
T COG0068 181 PHLFLV 186 (750)
T ss_pred CCeEEE
Confidence 655443
No 194
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=22.58 E-value=42 Score=33.21 Aligned_cols=35 Identities=29% Similarity=0.545 Sum_probs=23.8
Q ss_pred CCCcCccccccccC-----------CCCceeccCCCcchHHhHHHHH
Q 025679 31 CDDACSICLEEFSE-----------SDPSTVTSCKHEFHLQCVLEWC 66 (249)
Q Consensus 31 ~d~~C~ICle~~~~-----------~~~~~~~~C~H~Fc~~Ci~~wl 66 (249)
-...|+||.|.|.. .+.+.+ .=|-+||..|+..-.
T Consensus 512 ~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~l-e~G~ifH~~Cl~e~~ 557 (579)
T KOG2071|consen 512 RQASCPICQEKFEVVFDQEEDLWMYKDAVYL-EFGRIFHSKCLSEKR 557 (579)
T ss_pred cccCCcccccccceeecchhhheeecceeee-ccCceeeccccchHH
Confidence 35689999999862 112333 357899999987643
No 195
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=22.52 E-value=8.3 Score=25.66 Aligned_cols=33 Identities=30% Similarity=0.610 Sum_probs=17.6
Q ss_pred CcCcc--ccccccCCCC-----ceeccCCCcchHHhHHHH
Q 025679 33 DACSI--CLEEFSESDP-----STVTSCKHEFHLQCVLEW 65 (249)
Q Consensus 33 ~~C~I--Cle~~~~~~~-----~~~~~C~H~Fc~~Ci~~w 65 (249)
..|+- |-..+...+. ++-..|++.||+.|...|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 36766 7776653221 333349999999997776
No 196
>PRK11595 DNA utilization protein GntX; Provisional
Probab=22.27 E-value=64 Score=27.70 Aligned_cols=37 Identities=22% Similarity=0.435 Sum_probs=17.9
Q ss_pred cCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCccc
Q 025679 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (249)
Q Consensus 34 ~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~ 78 (249)
.|.+|-..+... ...+|..|...|-.-...|+.|-.+
T Consensus 7 ~C~~C~~~~~~~--------~~~lC~~C~~~l~~~~~~C~~Cg~~ 43 (227)
T PRK11595 7 LCWLCRMPLALS--------HWGICSVCSRALRTLKTCCPQCGLP 43 (227)
T ss_pred cCccCCCccCCC--------CCcccHHHHhhCCcccCcCccCCCc
Confidence 577776654211 1125666655542222356666544
No 197
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=22.02 E-value=62 Score=29.75 Aligned_cols=43 Identities=5% Similarity=-0.197 Sum_probs=30.8
Q ss_pred CCcCccccccccCCCCceeccCCC-cchHHhHHHHHhcCCCCCCCcccC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQRSSQCPMCWQPI 79 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H-~Fc~~Ci~~wl~~~~~CP~Cr~~i 79 (249)
...|..|-+.+. ...+.+|+| .||..|.. +....+||+|-...
T Consensus 343 ~~~~~~~~~~~~---st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 343 SLKGTSAGFGLL---STIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hcccccccCcee---eeEeecCCcccChhhhhh--cccCCccccccccc
Confidence 567888887663 123458999 69999976 55677899996543
No 198
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.23 E-value=1.2e+02 Score=21.77 Aligned_cols=49 Identities=14% Similarity=0.422 Sum_probs=29.7
Q ss_pred cCccccccccCC-CCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCCc
Q 025679 34 ACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (249)
Q Consensus 34 ~C~ICle~~~~~-~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~ 84 (249)
.|--|-.++-.+ ....+-.=.|.||..|....| ...||.|-..+.-...
T Consensus 7 nCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l--~g~CPnCGGelv~RP~ 56 (84)
T COG3813 7 NCECCDRDLPPDSTDARICTFECTFCADCAENRL--HGLCPNCGGELVARPI 56 (84)
T ss_pred CCcccCCCCCCCCCceeEEEEeeehhHhHHHHhh--cCcCCCCCchhhcCcC
Confidence 355566665422 222331224679999987654 4589999887765543
No 199
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=21.08 E-value=42 Score=20.32 Aligned_cols=10 Identities=20% Similarity=0.870 Sum_probs=6.4
Q ss_pred cCcccccccc
Q 025679 34 ACSICLEEFS 43 (249)
Q Consensus 34 ~C~ICle~~~ 43 (249)
.|+=|.-.|.
T Consensus 4 ~Cp~C~~~y~ 13 (36)
T PF13717_consen 4 TCPNCQAKYE 13 (36)
T ss_pred ECCCCCCEEe
Confidence 5666766665
No 200
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.60 E-value=60 Score=26.67 Aligned_cols=25 Identities=28% Similarity=0.604 Sum_probs=18.8
Q ss_pred CCcchHHhHHHHHhcCCCCCCCcccCCC
Q 025679 54 KHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (249)
Q Consensus 54 ~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~ 81 (249)
.+.||.+|-.+-.. .||.|..+|..
T Consensus 27 ~~~fC~kCG~~tI~---~Cp~C~~~IrG 51 (158)
T PF10083_consen 27 REKFCSKCGAKTIT---SCPNCSTPIRG 51 (158)
T ss_pred HHHHHHHhhHHHHH---HCcCCCCCCCC
Confidence 45799999877554 69999887743
No 201
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=20.50 E-value=41 Score=37.01 Aligned_cols=48 Identities=21% Similarity=0.490 Sum_probs=34.2
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcC----CCCCCCcccC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMCWQPI 79 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~----~~CP~Cr~~i 79 (249)
...|.||..-....+-.....|.-.||..|++.-+... -.||-|+..-
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 56899999886532223334677889999999877543 3699998764
No 202
>PRK04023 DNA polymerase II large subunit; Validated
Probab=20.05 E-value=68 Score=34.00 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=31.6
Q ss_pred CCcCccccccccCCCCceeccCCC-----cchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKH-----EFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H-----~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
...|+-|-.... ......||. .||..| .+......||.|...+...
T Consensus 626 ~RfCpsCG~~t~---~frCP~CG~~Te~i~fCP~C--G~~~~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 626 RRKCPSCGKETF---YRRCPFCGTHTEPVYRCPRC--GIEVEEDECEKCGREPTPY 676 (1121)
T ss_pred CccCCCCCCcCC---cccCCCCCCCCCcceeCccc--cCcCCCCcCCCCCCCCCcc
Confidence 568999988742 234446874 599999 3444456799998777543
No 203
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=20.01 E-value=59 Score=19.74 Aligned_cols=10 Identities=30% Similarity=0.889 Sum_probs=6.9
Q ss_pred cCcccccccc
Q 025679 34 ACSICLEEFS 43 (249)
Q Consensus 34 ~C~ICle~~~ 43 (249)
.|+-|...|.
T Consensus 4 ~CP~C~~~f~ 13 (37)
T PF13719_consen 4 TCPNCQTRFR 13 (37)
T ss_pred ECCCCCceEE
Confidence 5777777665
Done!