Query 025679
Match_columns 249
No_of_seqs 266 out of 1661
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 15:15:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025679.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025679hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.5 5.6E-15 1.9E-19 109.4 4.4 73 9-81 15-89 (91)
2 2kiz_A E3 ubiquitin-protein li 99.5 3E-14 1E-18 99.6 5.9 54 29-82 11-64 (69)
3 2ect_A Ring finger protein 126 99.5 2.2E-14 7.5E-19 102.7 4.6 55 30-84 13-67 (78)
4 1iym_A EL5; ring-H2 finger, ub 99.5 2.3E-14 7.9E-19 95.7 4.0 50 31-80 4-54 (55)
5 2ep4_A Ring finger protein 24; 99.5 4.3E-14 1.5E-18 100.2 5.4 53 30-82 13-65 (74)
6 1x4j_A Ring finger protein 38; 99.5 2.4E-14 8.2E-19 101.9 3.2 52 30-81 21-72 (75)
7 2djb_A Polycomb group ring fin 99.4 7.8E-14 2.7E-18 98.5 4.7 52 31-84 14-65 (72)
8 1v87_A Deltex protein 2; ring- 99.4 2.1E-13 7.1E-18 104.5 6.1 54 29-82 22-95 (114)
9 3ng2_A RNF4, snurf, ring finge 99.4 9.8E-14 3.3E-18 97.2 3.8 57 28-84 6-66 (71)
10 2ecl_A Ring-box protein 2; RNF 99.4 1.1E-13 3.9E-18 100.2 4.0 52 31-82 14-77 (81)
11 2ecm_A Ring finger and CHY zin 99.4 1.8E-13 6.2E-18 91.2 4.6 50 31-80 4-54 (55)
12 3lrq_A E3 ubiquitin-protein li 99.4 8.4E-14 2.9E-18 104.8 2.4 58 32-91 22-80 (100)
13 2ea6_A Ring finger protein 4; 99.4 3.2E-13 1.1E-17 93.8 4.6 52 30-81 13-68 (69)
14 1t1h_A Gspef-atpub14, armadill 99.4 3E-13 1E-17 96.7 4.5 55 30-87 6-61 (78)
15 2csy_A Zinc finger protein 183 99.4 4.3E-13 1.5E-17 96.7 5.1 48 30-80 13-60 (81)
16 2y43_A E3 ubiquitin-protein li 99.4 2.7E-13 9.3E-18 101.4 3.6 58 32-91 22-79 (99)
17 1chc_A Equine herpes virus-1 r 99.4 3.3E-13 1.1E-17 93.9 3.8 48 31-80 4-51 (68)
18 3dpl_R Ring-box protein 1; ubi 99.4 4E-13 1.4E-17 102.4 4.4 52 31-82 36-102 (106)
19 2xeu_A Ring finger protein 4; 99.3 3.2E-13 1.1E-17 92.5 3.2 54 31-84 2-59 (64)
20 2d8t_A Dactylidin, ring finger 99.3 3.8E-13 1.3E-17 94.7 3.6 49 30-81 13-61 (71)
21 2ysl_A Tripartite motif-contai 99.3 1.2E-12 4.2E-17 92.2 5.0 51 30-83 18-71 (73)
22 2ckl_A Polycomb group ring fin 99.3 1E-12 3.5E-17 99.9 4.7 49 32-82 15-63 (108)
23 4ayc_A E3 ubiquitin-protein li 99.3 4.8E-13 1.6E-17 106.3 3.0 49 32-83 53-101 (138)
24 2ct2_A Tripartite motif protei 99.3 1.5E-12 5E-17 94.8 5.3 53 31-83 14-70 (88)
25 2yur_A Retinoblastoma-binding 99.3 1.4E-12 4.9E-17 92.5 4.7 50 31-83 14-66 (74)
26 2ecy_A TNF receptor-associated 99.3 1.3E-12 4.6E-17 90.5 4.1 50 31-83 14-64 (66)
27 3ztg_A E3 ubiquitin-protein li 99.3 2.6E-12 9E-17 94.6 5.6 58 30-90 11-72 (92)
28 2ecn_A Ring finger protein 141 99.3 6E-13 2E-17 93.2 1.3 50 30-83 13-62 (70)
29 3fl2_A E3 ubiquitin-protein li 99.3 3.1E-12 1.1E-16 99.5 5.5 59 32-93 52-112 (124)
30 2ecw_A Tripartite motif-contai 99.3 2.5E-12 8.7E-17 92.7 4.5 50 31-83 18-73 (85)
31 4a0k_B E3 ubiquitin-protein li 99.2 7E-13 2.4E-17 102.7 0.5 52 31-82 47-113 (117)
32 2kr4_A Ubiquitin conjugation f 99.2 5.6E-12 1.9E-16 92.1 5.2 57 31-90 13-69 (85)
33 2ecv_A Tripartite motif-contai 99.2 3.5E-12 1.2E-16 91.9 4.0 50 31-83 18-73 (85)
34 2egp_A Tripartite motif-contai 99.2 1.1E-12 3.6E-17 93.8 0.8 50 31-83 11-67 (79)
35 1z6u_A NP95-like ring finger p 99.2 9.9E-12 3.4E-16 100.2 6.3 60 32-94 78-139 (150)
36 2ysj_A Tripartite motif-contai 99.2 7.3E-12 2.5E-16 85.8 4.6 42 31-75 19-63 (63)
37 1wgm_A Ubiquitin conjugation f 99.2 9.7E-12 3.3E-16 93.3 5.5 59 31-92 21-80 (98)
38 2d8s_A Cellular modulator of i 99.2 5E-12 1.7E-16 91.5 3.7 54 28-82 11-71 (80)
39 1g25_A CDK-activating kinase a 99.2 7.8E-12 2.7E-16 86.3 4.5 53 32-84 3-58 (65)
40 2kre_A Ubiquitin conjugation f 99.2 1.3E-11 4.6E-16 92.9 6.1 59 31-92 28-86 (100)
41 2ckl_B Ubiquitin ligase protei 99.2 5.1E-12 1.8E-16 103.0 3.7 49 32-82 54-103 (165)
42 3hct_A TNF receptor-associated 99.2 1.5E-11 5.1E-16 94.9 3.9 59 31-92 17-76 (118)
43 1jm7_B BARD1, BRCA1-associated 99.2 8.8E-12 3E-16 96.1 2.4 55 32-90 22-76 (117)
44 4ap4_A E3 ubiquitin ligase RNF 99.2 1.2E-11 4.2E-16 96.2 3.1 54 31-84 6-63 (133)
45 2ecj_A Tripartite motif-contai 99.1 2E-11 7E-16 81.9 3.7 42 31-75 14-58 (58)
46 1jm7_A BRCA1, breast cancer ty 99.1 8.3E-12 2.8E-16 94.9 1.8 50 32-84 21-73 (112)
47 1e4u_A Transcriptional repress 99.1 5.6E-11 1.9E-15 85.5 5.0 53 30-83 9-64 (78)
48 3l11_A E3 ubiquitin-protein li 99.1 9E-12 3.1E-16 95.6 0.5 48 31-81 14-62 (115)
49 2ct0_A Non-SMC element 1 homol 99.1 1E-10 3.4E-15 83.3 5.2 50 32-83 15-66 (74)
50 2yu4_A E3 SUMO-protein ligase 99.1 6.2E-11 2.1E-15 88.1 4.0 62 31-94 6-76 (94)
51 1rmd_A RAG1; V(D)J recombinati 99.1 5.8E-11 2E-15 91.1 3.6 50 32-84 23-73 (116)
52 2c2l_A CHIP, carboxy terminus 99.0 1.6E-10 5.4E-15 100.6 5.5 62 29-93 205-267 (281)
53 4ap4_A E3 ubiquitin ligase RNF 99.0 7E-11 2.4E-15 91.8 2.6 56 29-84 69-128 (133)
54 2vje_A E3 ubiquitin-protein li 99.0 1.1E-10 3.9E-15 80.6 3.3 49 29-80 5-56 (64)
55 1bor_A Transcription factor PM 99.0 6.6E-11 2.2E-15 79.5 1.3 49 29-83 3-51 (56)
56 3knv_A TNF receptor-associated 99.0 8.3E-11 2.8E-15 93.9 1.7 48 31-81 30-78 (141)
57 2f42_A STIP1 homology and U-bo 98.9 1.2E-09 4E-14 90.5 6.4 60 30-92 104-164 (179)
58 3hcs_A TNF receptor-associated 98.9 4.6E-10 1.6E-14 91.7 3.9 58 31-91 17-75 (170)
59 2y1n_A E3 ubiquitin-protein li 98.9 6.1E-10 2.1E-14 102.2 5.1 48 32-82 332-380 (389)
60 3htk_C E3 SUMO-protein ligase 98.9 3.2E-10 1.1E-14 98.7 3.0 59 32-92 181-243 (267)
61 4ic3_A E3 ubiquitin-protein li 98.9 2.3E-10 7.8E-15 81.2 1.5 43 32-81 24-67 (74)
62 2vje_B MDM4 protein; proto-onc 98.9 4.7E-10 1.6E-14 77.2 2.9 47 31-80 6-55 (63)
63 2ecg_A Baculoviral IAP repeat- 98.8 1.9E-09 6.5E-14 76.5 1.7 44 32-82 25-69 (75)
64 2ea5_A Cell growth regulator w 98.7 8.3E-09 2.8E-13 72.0 3.9 47 28-81 11-58 (68)
65 2bay_A PRE-mRNA splicing facto 98.6 9.4E-09 3.2E-13 70.3 2.4 51 32-85 3-54 (61)
66 2yho_A E3 ubiquitin-protein li 98.6 4.5E-09 1.5E-13 75.5 0.8 43 32-81 18-61 (79)
67 1vyx_A ORF K3, K3RING; zinc-bi 98.6 2.5E-08 8.6E-13 68.0 4.0 51 28-81 2-59 (60)
68 3k1l_B Fancl; UBC, ring, RWD, 98.6 8.1E-09 2.8E-13 92.9 1.7 52 30-81 306-373 (381)
69 1wim_A KIAA0161 protein; ring 98.6 1.4E-08 4.8E-13 75.0 2.2 48 31-78 4-61 (94)
70 3t6p_A Baculoviral IAP repeat- 98.5 2.4E-08 8.3E-13 90.6 1.4 43 32-81 295-338 (345)
71 3vk6_A E3 ubiquitin-protein li 98.2 5.8E-07 2E-11 66.8 3.3 46 34-81 3-49 (101)
72 3nw0_A Non-structural maintena 97.9 7E-06 2.4E-10 70.7 4.4 51 32-84 180-232 (238)
73 2ko5_A Ring finger protein Z; 96.4 0.0011 3.9E-08 48.4 1.9 45 33-82 29-74 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 96.1 0.0026 8.9E-08 46.7 2.5 34 31-66 2-37 (101)
75 2lri_C Autoimmune regulator; Z 92.5 0.09 3.1E-06 35.9 3.1 48 29-79 9-60 (66)
76 3i2d_A E3 SUMO-protein ligase 91.8 0.13 4.5E-06 46.6 4.2 62 32-95 249-314 (371)
77 4fo9_A E3 SUMO-protein ligase 91.1 0.18 6E-06 45.6 4.2 62 32-95 215-280 (360)
78 3m62_A Ubiquitin conjugation f 91.0 0.2 6.8E-06 50.7 4.9 57 30-89 889-946 (968)
79 2cs3_A Protein C14ORF4, MY039 90.7 0.14 4.7E-06 36.3 2.4 39 30-68 13-52 (93)
80 1weo_A Cellulose synthase, cat 90.6 0.49 1.7E-05 34.1 5.3 54 27-80 11-69 (93)
81 1wil_A KIAA1045 protein; ring 88.2 0.38 1.3E-05 34.3 3.2 36 29-65 12-47 (89)
82 2l5u_A Chromodomain-helicase-D 88.1 0.22 7.5E-06 33.2 1.8 49 26-77 5-57 (61)
83 1we9_A PHD finger family prote 88.0 0.072 2.4E-06 35.8 -0.7 49 30-78 4-58 (64)
84 2k16_A Transcription initiatio 84.8 0.17 5.8E-06 35.0 -0.2 50 30-80 16-70 (75)
85 3o36_A Transcription intermedi 84.2 0.21 7.2E-06 40.5 0.2 47 30-79 2-52 (184)
86 2ysm_A Myeloid/lymphoid or mix 83.7 0.32 1.1E-05 36.1 1.0 48 29-76 4-55 (111)
87 1fp0_A KAP-1 corepressor; PHD 83.1 0.49 1.7E-05 34.1 1.7 53 25-80 18-74 (88)
88 1mm2_A MI2-beta; PHD, zinc fin 80.8 0.31 1.1E-05 32.4 -0.1 47 29-78 6-56 (61)
89 1wem_A Death associated transc 80.4 0.44 1.5E-05 33.0 0.6 49 30-79 14-71 (76)
90 1f62_A Transcription factor WS 78.4 0.99 3.4E-05 28.5 1.8 44 34-77 2-49 (51)
91 3u5n_A E3 ubiquitin-protein li 77.6 0.34 1.1E-05 40.1 -0.8 48 29-79 4-55 (207)
92 1z60_A TFIIH basal transcripti 77.4 0.74 2.5E-05 30.6 1.0 43 33-75 16-58 (59)
93 1weu_A Inhibitor of growth fam 77.2 1.3 4.3E-05 32.1 2.3 49 27-79 31-86 (91)
94 1wep_A PHF8; structural genomi 76.2 1.4 4.7E-05 30.7 2.2 48 31-79 11-64 (79)
95 3lqh_A Histone-lysine N-methyl 76.0 0.65 2.2E-05 38.0 0.5 48 33-80 3-65 (183)
96 1wew_A DNA-binding family prot 75.7 0.57 1.9E-05 32.7 0.0 52 27-79 11-73 (78)
97 2d8v_A Zinc finger FYVE domain 74.5 1.7 5.9E-05 29.4 2.2 33 29-65 5-38 (67)
98 2vpb_A Hpygo1, pygopus homolog 73.7 2.4 8.3E-05 28.5 2.8 33 31-63 7-41 (65)
99 2yql_A PHD finger protein 21A; 71.7 0.29 1E-05 31.9 -2.2 45 29-76 6-54 (56)
100 1wen_A Inhibitor of growth fam 71.6 1.7 5.7E-05 29.8 1.6 47 28-79 12-66 (71)
101 2lv9_A Histone-lysine N-methyl 70.6 1 3.5E-05 32.8 0.4 45 32-77 28-75 (98)
102 1xwh_A Autoimmune regulator; P 69.3 2 6.7E-05 28.8 1.6 49 27-78 3-55 (66)
103 2lbm_A Transcriptional regulat 69.2 4.3 0.00015 31.7 3.7 46 29-77 60-116 (142)
104 2l43_A N-teminal domain from h 69.1 0.32 1.1E-05 35.0 -2.7 55 29-83 22-80 (88)
105 2kgg_A Histone demethylase jar 68.7 1.6 5.6E-05 27.8 1.0 43 34-76 4-52 (52)
106 2ri7_A Nucleosome-remodeling f 68.4 0.88 3E-05 36.3 -0.4 50 28-78 4-59 (174)
107 3v43_A Histone acetyltransfera 68.2 6.8 0.00023 28.9 4.5 32 32-63 5-42 (112)
108 4gne_A Histone-lysine N-methyl 63.0 3.3 0.00011 30.7 1.9 51 26-82 9-66 (107)
109 2xb1_A Pygopus homolog 2, B-ce 61.3 3.8 0.00013 30.1 2.0 48 32-79 3-62 (105)
110 2o35_A Hypothetical protein DU 61.2 3.1 0.00011 30.5 1.4 12 56-67 42-53 (105)
111 3fyb_A Protein of unknown func 61.1 3.1 0.00011 30.4 1.4 12 56-67 41-52 (104)
112 2yt5_A Metal-response element- 60.2 2.4 8.4E-05 28.1 0.6 50 30-79 4-62 (66)
113 2e6s_A E3 ubiquitin-protein li 59.1 1.7 6E-05 30.2 -0.3 46 32-77 26-76 (77)
114 2ro1_A Transcription intermedi 58.0 2.1 7.2E-05 34.8 -0.0 45 32-79 2-50 (189)
115 1zbd_B Rabphilin-3A; G protein 57.5 3.8 0.00013 31.6 1.4 34 30-63 53-88 (134)
116 2ku3_A Bromodomain-containing 57.2 8.4 0.00029 26.2 3.0 50 28-77 12-65 (71)
117 1z2q_A LM5-1; membrane protein 57.0 6.8 0.00023 27.4 2.6 38 28-65 17-55 (84)
118 2zet_C Melanophilin; complex, 57.0 5 0.00017 31.7 2.0 48 30-78 66-117 (153)
119 1joc_A EEA1, early endosomal a 56.2 5.6 0.00019 30.2 2.1 36 29-64 66-102 (125)
120 1y02_A CARP2, FYVE-ring finger 55.5 0.76 2.6E-05 35.0 -2.9 50 29-78 16-66 (120)
121 2puy_A PHD finger protein 21A; 55.1 5.1 0.00017 26.1 1.5 47 29-78 2-52 (60)
122 3t7l_A Zinc finger FYVE domain 54.3 6.5 0.00022 27.9 2.1 35 31-65 19-54 (90)
123 1x4u_A Zinc finger, FYVE domai 53.5 7.6 0.00026 27.1 2.3 35 29-63 11-46 (84)
124 2yw8_A RUN and FYVE domain-con 53.4 6.8 0.00023 27.3 2.1 36 29-64 16-52 (82)
125 3mpx_A FYVE, rhogef and PH dom 53.4 2.8 9.5E-05 37.9 0.0 49 31-79 374-430 (434)
126 3ask_A E3 ubiquitin-protein li 53.3 2.6 8.9E-05 35.5 -0.2 46 32-77 174-224 (226)
127 3v43_A Histone acetyltransfera 51.2 3.6 0.00012 30.4 0.3 44 34-77 63-111 (112)
128 2e6r_A Jumonji/ARID domain-con 50.5 3.8 0.00013 29.4 0.3 50 28-77 12-65 (92)
129 3asl_A E3 ubiquitin-protein li 49.7 2.3 7.8E-05 29.0 -0.9 26 52-77 38-68 (70)
130 2gmg_A Hypothetical protein PF 48.2 4.7 0.00016 29.8 0.5 32 46-82 66-97 (105)
131 3ql9_A Transcriptional regulat 47.3 15 0.0005 28.1 3.2 46 29-77 54-110 (129)
132 1dvp_A HRS, hepatocyte growth 47.1 7.4 0.00025 32.1 1.6 33 32-64 161-194 (220)
133 2kwj_A Zinc finger protein DPF 46.3 9.4 0.00032 28.2 2.0 33 33-65 2-41 (114)
134 1wfk_A Zinc finger, FYVE domai 46.3 10 0.00034 26.9 2.0 33 32-64 9-42 (88)
135 1vfy_A Phosphatidylinositol-3- 46.0 10 0.00036 25.6 2.0 33 32-64 11-44 (73)
136 1wev_A Riken cDNA 1110020M19; 45.7 3.9 0.00013 29.0 -0.3 49 31-79 15-73 (88)
137 3zyq_A Hepatocyte growth facto 45.4 8 0.00028 32.2 1.6 34 32-65 164-198 (226)
138 1wd2_A Ariadne-1 protein homol 45.2 2.3 8E-05 28.1 -1.4 36 33-68 7-47 (60)
139 2ct7_A Ring finger protein 31; 43.1 2.6 8.9E-05 29.7 -1.5 32 35-66 28-62 (86)
140 1x64_A Alpha-actinin-2 associa 42.5 13 0.00045 25.7 2.2 40 32-82 25-64 (89)
141 2cu8_A Cysteine-rich protein 2 40.9 11 0.00037 25.2 1.5 41 32-82 9-49 (76)
142 3a1b_A DNA (cytosine-5)-methyl 40.2 18 0.00063 28.6 2.8 35 29-67 76-113 (159)
143 2jmo_A Parkin; IBR, E3 ligase, 39.9 2 7E-05 29.9 -2.5 16 52-67 55-70 (80)
144 2pv0_B DNA (cytosine-5)-methyl 39.6 19 0.00065 32.6 3.2 46 29-77 90-147 (386)
145 3shb_A E3 ubiquitin-protein li 39.1 3 0.0001 29.0 -1.7 26 52-77 46-76 (77)
146 1wyh_A SLIM 2, skeletal muscle 39.0 15 0.00052 24.0 2.0 42 32-82 5-46 (72)
147 1x4l_A Skeletal muscle LIM-pro 38.0 20 0.00067 23.5 2.4 42 32-82 5-48 (72)
148 2co8_A NEDD9 interacting prote 37.7 13 0.00044 25.4 1.4 42 32-83 15-56 (82)
149 2dar_A PDZ and LIM domain prot 37.7 13 0.00043 25.8 1.4 40 32-82 25-64 (90)
150 1x62_A C-terminal LIM domain p 37.7 12 0.00039 25.3 1.2 38 32-80 15-52 (79)
151 2l4z_A DNA endonuclease RBBP8, 37.5 9.3 0.00032 28.6 0.7 39 32-80 61-99 (123)
152 1x4k_A Skeletal muscle LIM-pro 36.7 17 0.00059 23.7 2.0 42 32-82 5-46 (72)
153 3o70_A PHD finger protein 13; 35.7 14 0.00046 24.9 1.2 48 28-77 15-66 (68)
154 2d8z_A Four and A half LIM dom 35.2 20 0.0007 23.2 2.1 39 32-81 5-43 (70)
155 1x63_A Skeletal muscle LIM-pro 35.1 34 0.0012 22.9 3.3 42 32-82 15-56 (82)
156 2fiy_A Protein FDHE homolog; F 34.5 2.7 9.2E-05 37.1 -3.2 46 30-78 180-231 (309)
157 1iml_A CRIP, cysteine rich int 34.4 8.8 0.0003 25.7 0.1 9 34-42 29-37 (76)
158 2d8x_A Protein pinch; LIM doma 33.9 15 0.00053 23.9 1.3 40 32-82 5-44 (70)
159 2d8y_A Eplin protein; LIM doma 33.5 31 0.0011 23.8 3.0 42 31-82 14-55 (91)
160 1g47_A Pinch protein; LIM doma 33.3 19 0.00064 23.9 1.7 42 32-82 11-52 (77)
161 1wee_A PHD finger family prote 32.6 13 0.00045 25.0 0.8 47 31-78 15-66 (72)
162 1x68_A FHL5 protein; four-and- 30.1 22 0.00075 23.6 1.6 43 32-82 5-48 (76)
163 3mjh_B Early endosome antigen 29.6 13 0.00043 21.7 0.2 11 33-43 6-16 (34)
164 2l3k_A Rhombotin-2, linker, LI 29.3 21 0.0007 26.4 1.5 38 34-80 10-47 (123)
165 1wig_A KIAA1808 protein; LIM d 29.1 23 0.00079 23.4 1.6 37 33-80 6-42 (73)
166 1m3v_A FLIN4, fusion of the LI 29.0 32 0.0011 25.2 2.5 48 34-82 34-82 (122)
167 2a20_A Regulating synaptic mem 28.8 37 0.0013 22.4 2.4 37 29-65 6-43 (62)
168 1a7i_A QCRP2 (LIM1); LIM domai 28.6 12 0.00041 25.3 0.0 41 32-82 7-47 (81)
169 2dj7_A Actin-binding LIM prote 28.6 23 0.00078 24.0 1.5 39 32-80 15-53 (80)
170 1v6g_A Actin binding LIM prote 28.4 23 0.0008 23.8 1.5 39 33-82 16-54 (81)
171 1nyp_A Pinch protein; LIM doma 27.2 26 0.0009 22.4 1.5 40 32-82 5-44 (66)
172 2cur_A Skeletal muscle LIM-pro 26.8 23 0.00079 22.9 1.2 38 33-81 6-43 (69)
173 2cor_A Pinch protein; LIM doma 26.0 27 0.00092 23.5 1.5 40 32-82 15-54 (79)
174 3f6q_B LIM and senescent cell 25.4 31 0.0011 22.2 1.7 42 32-82 11-52 (72)
175 2jmi_A Protein YNG1, ING1 homo 25.1 17 0.00059 25.9 0.3 50 25-77 19-75 (90)
176 2xjy_A Rhombotin-2; oncoprotei 23.8 54 0.0019 24.0 3.0 49 33-81 30-78 (131)
177 1x6a_A LIMK-2, LIM domain kina 23.6 42 0.0014 22.4 2.1 38 32-80 15-52 (81)
178 2jrp_A Putative cytoplasmic pr 23.5 4 0.00014 28.8 -3.3 39 33-79 3-41 (81)
179 2vnf_A ING 4, P29ING4, inhibit 22.7 23 0.00078 23.0 0.5 43 30-77 8-58 (60)
180 2ku7_A MLL1 PHD3-CYP33 RRM chi 22.7 52 0.0018 23.9 2.7 27 52-78 7-44 (140)
181 2cuq_A Four and A half LIM dom 22.6 35 0.0012 22.6 1.5 39 32-81 15-53 (80)
182 1x3h_A Leupaxin; paxillin fami 21.1 34 0.0012 22.7 1.2 39 33-82 16-54 (80)
183 2dlo_A Thyroid receptor-intera 21.1 30 0.001 23.2 0.9 40 32-82 15-54 (81)
184 3vth_A Hydrogenase maturation 20.2 36 0.0012 33.6 1.6 49 32-80 111-194 (761)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.52 E-value=5.6e-15 Score=109.39 Aligned_cols=73 Identities=25% Similarity=0.528 Sum_probs=55.6
Q ss_pred CCCCchhhhhhHHhhhcCC--CCCCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCC
Q 025679 9 GKKPEDHMTSAAAFVEGGI--QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (249)
Q Consensus 9 ~~~~~~~~~~~~~~v~~~~--~~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~ 81 (249)
.......+..++.++.... ....+..|+||++.|..++.+..++|+|.||..||..|+..+..||+||..|..
T Consensus 15 ~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 15 PPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 3444455666555443332 234577899999999866667778999999999999999999999999998753
No 2
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=3e-14 Score=99.63 Aligned_cols=54 Identities=30% Similarity=0.768 Sum_probs=47.1
Q ss_pred CCCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
...+..|+||++.|..+..++.++|+|.||..||..|+..+..||+||..|...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 344778999999997666778889999999999999999889999999998654
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.48 E-value=2.2e-14 Score=102.70 Aligned_cols=55 Identities=22% Similarity=0.753 Sum_probs=47.6
Q ss_pred CCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCCc
Q 025679 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~ 84 (249)
..+..|+||++.|.....+.+++|+|.||..||..|+..+..||+||..+...+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 3478999999999866666778999999999999999988999999999976543
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.47 E-value=2.3e-14 Score=95.70 Aligned_cols=50 Identities=30% Similarity=0.802 Sum_probs=44.1
Q ss_pred CCCcCccccccccCCCCceecc-CCCcchHHhHHHHHhcCCCCCCCcccCC
Q 025679 31 CDDACSICLEEFSESDPSTVTS-CKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~-C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
++..|+||++.|..++.+..++ |+|.||..||.+|+..+..||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4678999999998666667776 9999999999999999999999999874
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=4.3e-14 Score=100.16 Aligned_cols=53 Identities=32% Similarity=0.905 Sum_probs=46.2
Q ss_pred CCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
..+..|+||++.|.....+.+++|+|.||..||..|+..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 34779999999998666677779999999999999999888999999988643
No 6
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.4e-14 Score=101.90 Aligned_cols=52 Identities=31% Similarity=0.776 Sum_probs=45.9
Q ss_pred CCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCC
Q 025679 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~ 81 (249)
.++..|+||++.|...+.+..++|+|.||..||..|+..+..||+||+.+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4478999999999866666778999999999999999999999999998864
No 7
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=7.8e-14 Score=98.50 Aligned_cols=52 Identities=29% Similarity=0.562 Sum_probs=45.4
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCCc
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~ 84 (249)
++..|+||++.|. +++.+++|+|.||..||..|+.....||+||..+...++
T Consensus 14 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 14 PYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp GGGSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 3779999999996 566666999999999999999988999999999976654
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.41 E-value=2.1e-13 Score=104.49 Aligned_cols=54 Identities=33% Similarity=0.679 Sum_probs=42.5
Q ss_pred CCCCCcCccccccccCCC---------------CceeccCCCcchHHhHHHHHh-----cCCCCCCCcccCCCC
Q 025679 29 DSCDDACSICLEEFSESD---------------PSTVTSCKHEFHLQCVLEWCQ-----RSSQCPMCWQPISLK 82 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~---------------~~~~~~C~H~Fc~~Ci~~wl~-----~~~~CP~Cr~~i~~~ 82 (249)
...++.|+||++.|.... .+.+++|+|.||..||..|+. .+..||+||..+..+
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 334679999999996421 233789999999999999994 467899999988644
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.41 E-value=9.8e-14 Score=97.24 Aligned_cols=57 Identities=30% Similarity=0.623 Sum_probs=47.2
Q ss_pred CCCCCCcCccccccccC----CCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCCc
Q 025679 28 QDSCDDACSICLEEFSE----SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (249)
Q Consensus 28 ~~~~d~~C~ICle~~~~----~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~ 84 (249)
..+++..|+||++.|.+ +..+++++|+|.||..||.+|+..+..||+||..+...+.
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 44557899999999863 1234778999999999999999999999999999976654
No 10
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.1e-13 Score=100.22 Aligned_cols=52 Identities=29% Similarity=0.723 Sum_probs=41.9
Q ss_pred CCCcCccccccccC-----------CC-CceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 31 CDDACSICLEEFSE-----------SD-PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 31 ~d~~C~ICle~~~~-----------~~-~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
+++.|+||++.|.+ ++ .+.+++|+|.||..||.+|+..+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 46789999998853 22 334446999999999999999999999999998654
No 11
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.40 E-value=1.8e-13 Score=91.20 Aligned_cols=50 Identities=34% Similarity=0.705 Sum_probs=43.1
Q ss_pred CCCcCccccccccCC-CCceeccCCCcchHHhHHHHHhcCCCCCCCcccCC
Q 025679 31 CDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 31 ~d~~C~ICle~~~~~-~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
.+..|+||++.|.++ ..+.+++|+|.||..||.+|+.....||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 467899999998643 34677899999999999999998899999998874
No 12
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.39 E-value=8.4e-14 Score=104.76 Aligned_cols=58 Identities=26% Similarity=0.663 Sum_probs=47.3
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcC-CCCCCCcccCCCCCcchHHHHH
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLE 91 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~-~~CP~Cr~~i~~~~~~~~~~~~ 91 (249)
+..|+||++.|. +++.+++|||.||..||..|+... ..||+||..+...++.....+.
T Consensus 22 ~~~C~IC~~~~~--~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~ 80 (100)
T 3lrq_A 22 VFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAE 80 (100)
T ss_dssp HTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHH
T ss_pred CCCCccCCcccc--CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHH
Confidence 679999999996 555548999999999999999877 6999999999876655443333
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.2e-13 Score=93.84 Aligned_cols=52 Identities=31% Similarity=0.659 Sum_probs=43.5
Q ss_pred CCCCcCccccccccCC----CCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCC
Q 025679 30 SCDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~----~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~ 81 (249)
.++..|+||++.|.+. ..+++++|+|.||..||..|+.....||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3478999999998631 223778999999999999999999999999998854
No 14
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.37 E-value=3e-13 Score=96.72 Aligned_cols=55 Identities=20% Similarity=0.402 Sum_probs=45.9
Q ss_pred CCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhc-CCCCCCCcccCCCCCcchH
Q 025679 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATSQ 87 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~-~~~CP~Cr~~i~~~~~~~~ 87 (249)
.++..|+||++.|. ++ ++++|||.||..||..|+.. ...||+||..+...++..+
T Consensus 6 ~~~~~C~IC~~~~~--~P-v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n 61 (78)
T 1t1h_A 6 PEYFRCPISLELMK--DP-VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61 (78)
T ss_dssp SSSSSCTTTSCCCS--SE-EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEEC
T ss_pred cccCCCCCcccccc--CC-EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccC
Confidence 44889999999995 44 55699999999999999986 7889999999987665543
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4.3e-13 Score=96.71 Aligned_cols=48 Identities=33% Similarity=0.713 Sum_probs=42.4
Q ss_pred CCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCC
Q 025679 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
..+..|+||++.|. + +++++|+|.||..||..|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~--~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQ--N-PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCC--S-EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhc--C-eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34779999999995 4 456799999999999999998899999999986
No 16
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.36 E-value=2.7e-13 Score=101.43 Aligned_cols=58 Identities=24% Similarity=0.623 Sum_probs=47.8
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCCcchHHHHH
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLE 91 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~~~~~~~~ 91 (249)
+..|+||++.|. +++.+++|||.||..||..|+..+..||+||..+...+...+..+.
T Consensus 22 ~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~ 79 (99)
T 2y43_A 22 LLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILD 79 (99)
T ss_dssp HTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHH
T ss_pred CCCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHH
Confidence 678999999996 5555559999999999999999889999999999876665554433
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.36 E-value=3.3e-13 Score=93.86 Aligned_cols=48 Identities=33% Similarity=0.887 Sum_probs=43.1
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCC
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
.+..|+||++.+. +++..++|+|.||..||..|+..+..||+||..+.
T Consensus 4 ~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 4678999999986 55678899999999999999998999999999885
No 18
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.35 E-value=4e-13 Score=102.39 Aligned_cols=52 Identities=23% Similarity=0.632 Sum_probs=43.8
Q ss_pred CCCcCccccccccCC---------------CCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 31 CDDACSICLEEFSES---------------DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 31 ~d~~C~ICle~~~~~---------------~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
+++.|+||++.|... ..+.+++|+|.||..||..||..+.+||+||+.|..+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 102 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcceee
Confidence 478999999998732 1256679999999999999999999999999997643
No 19
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.35 E-value=3.2e-13 Score=92.48 Aligned_cols=54 Identities=30% Similarity=0.623 Sum_probs=45.1
Q ss_pred CCCcCccccccccCC----CCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCCc
Q 025679 31 CDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (249)
Q Consensus 31 ~d~~C~ICle~~~~~----~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~ 84 (249)
++..|+||++.|.+. +.+.+++|+|.||..||.+|+..+..||+||..+...+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 367899999998631 234678999999999999999999999999999876543
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=3.8e-13 Score=94.66 Aligned_cols=49 Identities=29% Similarity=0.554 Sum_probs=42.6
Q ss_pred CCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCC
Q 025679 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~ 81 (249)
.++..|+||++.|. + .+.++|+|.||..||..|+.....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~--~-~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCV--H-PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCS--S-EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccC--C-CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 44789999999985 3 4566999999999999999988999999999864
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.2e-12 Score=92.15 Aligned_cols=51 Identities=24% Similarity=0.644 Sum_probs=42.5
Q ss_pred CCCCcCccccccccCCCCceeccCCCcchHHhHHHHHh---cCCCCCCCcccCCCCC
Q 025679 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---RSSQCPMCWQPISLKD 83 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~---~~~~CP~Cr~~i~~~~ 83 (249)
.++..|+||++.|. + +++++|+|.||..||..|+. ....||+||..+...+
T Consensus 18 ~~~~~C~IC~~~~~--~-~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 18 QEEVICPICLDILQ--K-PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCBCTTTCSBCS--S-EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred ccCCEeccCCcccC--C-eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 34789999999985 3 45569999999999999996 4568999999987654
No 22
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.32 E-value=1e-12 Score=99.87 Aligned_cols=49 Identities=27% Similarity=0.662 Sum_probs=43.6
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
+..|+||++.|. +++++++|||.||..||..|+.....||+||..+...
T Consensus 15 ~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 15 HLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GTBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCCccCChHHh--CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 679999999996 5555569999999999999999889999999998765
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.32 E-value=4.8e-13 Score=106.26 Aligned_cols=49 Identities=35% Similarity=0.833 Sum_probs=42.9
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~ 83 (249)
+..|+||++.|. + +++++|||.||..||..|+..+..||+||..+....
T Consensus 53 ~~~C~iC~~~~~--~-~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFI--E-AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCS--S-EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred cCCCcccCcccC--C-ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 678999999995 4 456799999999999999999999999999986553
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.5e-12 Score=94.84 Aligned_cols=53 Identities=26% Similarity=0.595 Sum_probs=44.1
Q ss_pred CCCcCccccccccCCCC-ceeccCCCcchHHhHHHHHhcC---CCCCCCcccCCCCC
Q 025679 31 CDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRS---SQCPMCWQPISLKD 83 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~-~~~~~C~H~Fc~~Ci~~wl~~~---~~CP~Cr~~i~~~~ 83 (249)
++..|+||++.|.+.+. +++++|+|.||..||..|+... ..||+||..+...+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 37799999999974332 6677999999999999999875 78999999886543
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.31 E-value=1.4e-12 Score=92.52 Aligned_cols=50 Identities=26% Similarity=0.513 Sum_probs=41.5
Q ss_pred CCCcCccccccccCCCCceecc-CCCcchHHhHHHHHhcC--CCCCCCcccCCCCC
Q 025679 31 CDDACSICLEEFSESDPSTVTS-CKHEFHLQCVLEWCQRS--SQCPMCWQPISLKD 83 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~-C~H~Fc~~Ci~~wl~~~--~~CP~Cr~~i~~~~ 83 (249)
++..|+||++.|. +++ +++ |+|.||..||..|+... ..||+||+.+...+
T Consensus 14 ~~~~C~IC~~~~~--~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 14 DELLCLICKDIMT--DAV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp GGGSCSSSCCCCT--TCE-ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCcCCChHHh--CCe-EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 3789999999996 554 467 99999999999999865 68999999865444
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.3e-12 Score=90.47 Aligned_cols=50 Identities=24% Similarity=0.527 Sum_probs=42.2
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHh-cCCCCCCCcccCCCCC
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLKD 83 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~-~~~~CP~Cr~~i~~~~ 83 (249)
++..|+||++.+. +++. ++|||.||..||..|+. ....||+||..+...+
T Consensus 14 ~~~~C~IC~~~~~--~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 14 DKYKCEKCHLVLC--SPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCEECTTTCCEES--SCCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred cCCCCCCCChHhc--CeeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 3789999999996 4444 69999999999999995 5678999999987654
No 27
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.29 E-value=2.6e-12 Score=94.60 Aligned_cols=58 Identities=24% Similarity=0.481 Sum_probs=44.5
Q ss_pred CCCCcCccccccccCCCCceecc-CCCcchHHhHHHHHhcC--CCCCCCcccC-CCCCcchHHHH
Q 025679 30 SCDDACSICLEEFSESDPSTVTS-CKHEFHLQCVLEWCQRS--SQCPMCWQPI-SLKDATSQELL 90 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~~-C~H~Fc~~Ci~~wl~~~--~~CP~Cr~~i-~~~~~~~~~~~ 90 (249)
.++..|+||++.|. +++ +++ |||.||..||..|+... ..||+||..+ ...++..+..+
T Consensus 11 ~~~~~C~IC~~~~~--~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l 72 (92)
T 3ztg_A 11 PDELLCLICKDIMT--DAV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFL 72 (92)
T ss_dssp CTTTEETTTTEECS--SCE-ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHH
T ss_pred CcCCCCCCCChhhc--Cce-ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHH
Confidence 34789999999996 554 568 99999999999999643 5899999997 34444444433
No 28
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=6e-13 Score=93.18 Aligned_cols=50 Identities=26% Similarity=0.833 Sum_probs=43.6
Q ss_pred CCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCC
Q 025679 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~ 83 (249)
.++..|+||++.+. + ++++|+|.||..||..|+.....||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~--~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRA--D--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCC--S--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCcc--C--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 34789999999986 3 67799999999999999999999999999987543
No 29
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.28 E-value=3.1e-12 Score=99.54 Aligned_cols=59 Identities=20% Similarity=0.380 Sum_probs=46.2
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcC-CCCCCCcccCCC-CCcchHHHHHHH
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISL-KDATSQELLEAV 93 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~-~~CP~Cr~~i~~-~~~~~~~~~~~~ 93 (249)
+..|+||++.|. + ++.++|||.||..||..|+... ..||+||..+.. ..+..+..+..+
T Consensus 52 ~~~C~IC~~~~~--~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~ 112 (124)
T 3fl2_A 52 TFQCICCQELVF--R-PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTV 112 (124)
T ss_dssp HTBCTTTSSBCS--S-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHH
T ss_pred CCCCCcCChHHc--C-cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHH
Confidence 678999999995 4 4556999999999999999854 589999999976 455554444433
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.27 E-value=2.5e-12 Score=92.65 Aligned_cols=50 Identities=28% Similarity=0.750 Sum_probs=42.5
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHhc------CCCCCCCcccCCCCC
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPISLKD 83 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~------~~~CP~Cr~~i~~~~ 83 (249)
++..|+||++.|. ++ ++++|+|.||..||..|+.. ...||+||..+...+
T Consensus 18 ~~~~C~IC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 18 EEVTCPICLELLK--EP-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp TTTSCTTTCSCCS--SC-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred cCCCCcCCChhhC--cc-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 3789999999995 44 46799999999999999986 678999999987554
No 31
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.25 E-value=7e-13 Score=102.70 Aligned_cols=52 Identities=23% Similarity=0.632 Sum_probs=1.1
Q ss_pred CCCcCccccccccCC---------------CCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 31 CDDACSICLEEFSES---------------DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 31 ~d~~C~ICle~~~~~---------------~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
.++.|+||++.|.+. ..+..++|+|.||..||..||..+..||+||+.+..+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 113 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeee
Confidence 467999999999631 1234468999999999999999999999999987543
No 32
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.25 E-value=5.6e-12 Score=92.13 Aligned_cols=57 Identities=12% Similarity=0.009 Sum_probs=48.4
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCCcchHHHH
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELL 90 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~~~~~~~ 90 (249)
++..|+||++.|. +| ++++|||.||..||..|+.....||+|+..+...++..+..+
T Consensus 13 ~~~~CpI~~~~m~--dP-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L 69 (85)
T 2kr4_A 13 DEFRDPLMDTLMT--DP-VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPEL 69 (85)
T ss_dssp TTTBCTTTCSBCS--SE-EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHH
T ss_pred hheECcccCchhc--CC-eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHH
Confidence 4789999999995 44 556899999999999999988899999999988777665443
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.5e-12 Score=91.89 Aligned_cols=50 Identities=28% Similarity=0.684 Sum_probs=42.5
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHhc------CCCCCCCcccCCCCC
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPISLKD 83 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~------~~~CP~Cr~~i~~~~ 83 (249)
++..|+||++.|. ++ ++++|+|.||..||..|+.. ...||+||..+...+
T Consensus 18 ~~~~C~IC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 18 EEVTCPICLELLT--QP-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCTTTCSCCS--SC-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred CCCCCCCCCcccC--Cc-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 3789999999995 44 45699999999999999976 778999999987654
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.24 E-value=1.1e-12 Score=93.78 Aligned_cols=50 Identities=28% Similarity=0.646 Sum_probs=42.1
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHhc-------CCCCCCCcccCCCCC
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-------SSQCPMCWQPISLKD 83 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~-------~~~CP~Cr~~i~~~~ 83 (249)
++..|+||++.|. +++ +++|||.||..||..|+.. ...||+||..+...+
T Consensus 11 ~~~~C~IC~~~~~--~p~-~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 11 EEVTCPICLELLT--EPL-SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCEETTTTEECS--SCC-CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred cCCCCcCCCcccC--Cee-ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 3789999999995 444 4699999999999999976 568999999987643
No 35
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.23 E-value=9.9e-12 Score=100.23 Aligned_cols=60 Identities=20% Similarity=0.432 Sum_probs=47.5
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCC-CCCCCcccCCCC-CcchHHHHHHHH
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISLK-DATSQELLEAVE 94 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~-~CP~Cr~~i~~~-~~~~~~~~~~~~ 94 (249)
+..|+||++.|. + +++++|+|.||..||..|+.... .||+||..+... .+..+..+..+.
T Consensus 78 ~~~C~IC~~~~~--~-pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv 139 (150)
T 1z6u_A 78 SFMCVCCQELVY--Q-PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLL 139 (150)
T ss_dssp HTBCTTTSSBCS--S-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHH
T ss_pred CCEeecCChhhc--C-CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHH
Confidence 679999999995 4 45579999999999999998654 899999999876 555554444443
No 36
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=7.3e-12 Score=85.82 Aligned_cols=42 Identities=31% Similarity=0.851 Sum_probs=35.8
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHh---cCCCCCCC
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---RSSQCPMC 75 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~---~~~~CP~C 75 (249)
++..|+||++.|. ++ ++++|||.||..||..|+. ....||+|
T Consensus 19 ~~~~C~IC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ--KP-VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS--SC-EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhC--Ce-EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4789999999996 44 4569999999999999997 45689998
No 37
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.22 E-value=9.7e-12 Score=93.34 Aligned_cols=59 Identities=12% Similarity=0.126 Sum_probs=49.8
Q ss_pred CCCcCccccccccCCCCceeccCC-CcchHHhHHHHHhcCCCCCCCcccCCCCCcchHHHHHH
Q 025679 31 CDDACSICLEEFSESDPSTVTSCK-HEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEA 92 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~-H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~~~~~~~~~ 92 (249)
++..|+||++.|. +| ++++|| |.||..||..||.....||+|+..+...++..+..+..
T Consensus 21 ~~~~CpI~~~~m~--dP-V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~ 80 (98)
T 1wgm_A 21 DEFLDPIMSTLMC--DP-VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKE 80 (98)
T ss_dssp TTTBCTTTCSBCS--SE-EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHH
T ss_pred HhcCCcCcccccc--CC-eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHH
Confidence 4789999999995 44 556999 99999999999998889999999998887776654443
No 38
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=5e-12 Score=91.51 Aligned_cols=54 Identities=30% Similarity=0.684 Sum_probs=44.1
Q ss_pred CCCCCCcCccccccccCCCCceeccCC-----CcchHHhHHHHHhcC--CCCCCCcccCCCC
Q 025679 28 QDSCDDACSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQRS--SQCPMCWQPISLK 82 (249)
Q Consensus 28 ~~~~d~~C~ICle~~~~~~~~~~~~C~-----H~Fc~~Ci~~wl~~~--~~CP~Cr~~i~~~ 82 (249)
...+++.|.||++.+.+++++ +++|. |.||..||.+|+..+ ..||+||..|...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 344577999999998765555 57996 999999999999765 5899999998654
No 39
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=7.8e-12 Score=86.28 Aligned_cols=53 Identities=25% Similarity=0.576 Sum_probs=41.8
Q ss_pred CCcCccccc-cccCCC-CceeccCCCcchHHhHHHHHhc-CCCCCCCcccCCCCCc
Q 025679 32 DDACSICLE-EFSESD-PSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDA 84 (249)
Q Consensus 32 d~~C~ICle-~~~~~~-~~~~~~C~H~Fc~~Ci~~wl~~-~~~CP~Cr~~i~~~~~ 84 (249)
+..|+||++ .|.+.. ...+++|||.||..||.+|+.. ...||+||..+...+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 678999999 776221 1246799999999999999764 4679999999976654
No 40
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.22 E-value=1.3e-11 Score=92.92 Aligned_cols=59 Identities=12% Similarity=0.019 Sum_probs=49.8
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCCcchHHHHHH
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEA 92 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~~~~~~~~~ 92 (249)
++..|+||++.|. +|+ +++|||.||..||..||.....||+|+..+...++..+..+..
T Consensus 28 ~~~~CpI~~~~m~--dPV-~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~ 86 (100)
T 2kre_A 28 DEFRDPLMDTLMT--DPV-RLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKE 86 (100)
T ss_dssp TTTBCTTTCSBCS--SEE-EETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHH
T ss_pred HhhCCcCccCccc--CCe-ECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHH
Confidence 4789999999995 554 5589999999999999998889999999998888776654443
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.21 E-value=5.1e-12 Score=103.00 Aligned_cols=49 Identities=27% Similarity=0.718 Sum_probs=42.1
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhc-CCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~-~~~CP~Cr~~i~~~ 82 (249)
+..|+||++.|. +++.+++|||.||..||..|+.. ...||+||..+...
T Consensus 54 ~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 54 ELMCPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 568999999996 55555699999999999999986 77899999998543
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.16 E-value=1.5e-11 Score=94.94 Aligned_cols=59 Identities=19% Similarity=0.480 Sum_probs=46.9
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCC-CCCCCcccCCCCCcchHHHHHH
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISLKDATSQELLEA 92 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~-~CP~Cr~~i~~~~~~~~~~~~~ 92 (249)
++..|+||++.|. ++ +.++|||.||..||..|+.... .||+||..+...+......+..
T Consensus 17 ~~~~C~IC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~ 76 (118)
T 3hct_A 17 SKYECPICLMALR--EA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKR 76 (118)
T ss_dssp GGGBCTTTCSBCS--SE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHH
T ss_pred CCCCCCcCChhhc--Ce-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHH
Confidence 3779999999995 44 5579999999999999998654 9999999998766554444433
No 43
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=8.8e-12 Score=96.13 Aligned_cols=55 Identities=27% Similarity=0.639 Sum_probs=45.4
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCCcchHHHH
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELL 90 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~~~~~~~ 90 (249)
+..|+||++.|. +++.+.+|||.||..||..|+. ..||+||..+...++..+..+
T Consensus 22 ~~~C~IC~~~~~--~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l 76 (117)
T 1jm7_B 22 LLRCSRCTNILR--EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQL 76 (117)
T ss_dssp TTSCSSSCSCCS--SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHH
T ss_pred CCCCCCCChHhh--CccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccccHHH
Confidence 679999999996 5555449999999999999998 789999999977666554433
No 44
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.15 E-value=1.2e-11 Score=96.17 Aligned_cols=54 Identities=30% Similarity=0.626 Sum_probs=45.1
Q ss_pred CCCcCccccccccCC----CCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCCc
Q 025679 31 CDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (249)
Q Consensus 31 ~d~~C~ICle~~~~~----~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~ 84 (249)
++..|+||++.|.+. ..+++++|||.||..||..|+..+..||+||+.+...+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 478999999999621 223778999999999999999999999999999876543
No 45
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2e-11 Score=81.86 Aligned_cols=42 Identities=36% Similarity=1.074 Sum_probs=35.3
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHh---cCCCCCCC
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---RSSQCPMC 75 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~---~~~~CP~C 75 (249)
++..|+||++.|. ++ ++++|+|.||..||..|+. ....||+|
T Consensus 14 ~~~~C~IC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLK--EP-VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCS--SC-CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccC--cc-EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3779999999996 44 4579999999999999954 56789998
No 46
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=8.3e-12 Score=94.92 Aligned_cols=50 Identities=36% Similarity=0.742 Sum_probs=41.5
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcC---CCCCCCcccCCCCCc
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS---SQCPMCWQPISLKDA 84 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~---~~CP~Cr~~i~~~~~ 84 (249)
+..|+||++.|. +++ .++|||.||..||..|+... ..||+||..+...+.
T Consensus 21 ~~~C~IC~~~~~--~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 21 ILECPICLELIK--EPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HTSCSSSCCCCS--SCC-BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCcccChhhc--CeE-ECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 568999999985 444 46999999999999999865 489999999876543
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.11 E-value=5.6e-11 Score=85.54 Aligned_cols=53 Identities=19% Similarity=0.439 Sum_probs=41.5
Q ss_pred CCCCcCccccccccCCCCceecc--CCCcchHHhHHHHHh-cCCCCCCCcccCCCCC
Q 025679 30 SCDDACSICLEEFSESDPSTVTS--CKHEFHLQCVLEWCQ-RSSQCPMCWQPISLKD 83 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~~--C~H~Fc~~Ci~~wl~-~~~~CP~Cr~~i~~~~ 83 (249)
.++..|+||++.+...+ +.+++ |||.||..||..|+. ....||+||+.+....
T Consensus 9 ~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 34789999999985323 33334 999999999999985 4578999999987654
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.11 E-value=9e-12 Score=95.57 Aligned_cols=48 Identities=27% Similarity=0.700 Sum_probs=40.8
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHhc-CCCCCCCcccCCC
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISL 81 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~-~~~CP~Cr~~i~~ 81 (249)
++..|+||++.|. ++ +.++|||.||..||..|+.. ...||+||..+..
T Consensus 14 ~~~~C~iC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILV--EP-VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCS--SC-EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccC--ce-eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3679999999995 44 45599999999999999976 6789999999863
No 49
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=1e-10 Score=83.33 Aligned_cols=50 Identities=24% Similarity=0.579 Sum_probs=42.0
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcC--CCCCCCcccCCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPISLKD 83 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~--~~CP~Cr~~i~~~~ 83 (249)
...|.||++.|..+ .....|+|.||..||.+||+.+ .+||+|+..|..+.
T Consensus 15 i~~C~IC~~~i~~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 15 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SCBCSSSCCBCSSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCcCcchhhHcccC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 56899999999743 3445899999999999999876 79999999987554
No 50
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=6.2e-11 Score=88.07 Aligned_cols=62 Identities=23% Similarity=0.452 Sum_probs=47.6
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcC------CCCCC--Cccc-CCCCCcchHHHHHHHH
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS------SQCPM--CWQP-ISLKDATSQELLEAVE 94 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~------~~CP~--Cr~~-i~~~~~~~~~~~~~~~ 94 (249)
.+..|+||++.|. +|+++..|||.||..||..||... ..||+ |+.. +...++..+..+..+.
T Consensus 6 ~~~~CPI~~~~~~--dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I 76 (94)
T 2yu4_A 6 SGFTCPITKEEMK--KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAI 76 (94)
T ss_dssp SCCBCTTTCSBCS--SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHH
T ss_pred cEeECcCcCchhc--CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHH
Confidence 3789999999996 555443499999999999999753 58999 9877 7777776665544433
No 51
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.07 E-value=5.8e-11 Score=91.14 Aligned_cols=50 Identities=36% Similarity=0.655 Sum_probs=42.8
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhc-CCCCCCCcccCCCCCc
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDA 84 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~-~~~CP~Cr~~i~~~~~ 84 (249)
+..|+||++.|. + ++.++|||.||..||..|+.. ...||+||..+...+.
T Consensus 23 ~~~C~IC~~~~~--~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 23 SISCQICEHILA--D-PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HTBCTTTCSBCS--S-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCcHhc--C-cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 678999999995 4 455799999999999999986 6789999999876553
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.04 E-value=1.6e-10 Score=100.63 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=49.2
Q ss_pred CCCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcC-CCCCCCcccCCCCCcchHHHHHHH
Q 025679 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEAV 93 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~-~~CP~Cr~~i~~~~~~~~~~~~~~ 93 (249)
...+..|+||++.|. +| ++++|||.||..||..|+... ..||+|+.++...++..+..+..+
T Consensus 205 ~~~~~~c~i~~~~~~--dP-v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~ 267 (281)
T 2c2l_A 205 IPDYLCGKISFELMR--EP-CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEV 267 (281)
T ss_dssp CCSTTBCTTTCSBCS--SE-EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHH
T ss_pred CCcccCCcCcCCHhc--CC-eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHH
Confidence 345889999999995 54 556999999999999999764 459999999987777666544433
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.03 E-value=7e-11 Score=91.84 Aligned_cols=56 Identities=30% Similarity=0.630 Sum_probs=46.2
Q ss_pred CCCCCcCccccccccC----CCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCCc
Q 025679 29 DSCDDACSICLEEFSE----SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~----~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~ 84 (249)
.+.+..|+||++.|.. ....+.++|+|.||..||.+|+.....||+||..+..++.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 4557899999999862 1223677999999999999999999999999999976543
No 54
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.03 E-value=1.1e-10 Score=80.59 Aligned_cols=49 Identities=24% Similarity=0.555 Sum_probs=41.3
Q ss_pred CCCCCcCccccccccCCCCceec--cCCCc-chHHhHHHHHhcCCCCCCCcccCC
Q 025679 29 DSCDDACSICLEEFSESDPSTVT--SCKHE-FHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~~~~~~--~C~H~-Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
.+++..|.||++.+. + +.++ +|||. ||..|+..|+..+..||+||+.+.
T Consensus 5 ~~~~~~C~IC~~~~~--~-~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRPK--N-GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSCS--C-EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCCcCCCCcCCCCCC--C-EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 345778999999874 3 4444 99998 899999999998889999999885
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=6.6e-11 Score=79.53 Aligned_cols=49 Identities=27% Similarity=0.516 Sum_probs=39.9
Q ss_pred CCCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCC
Q 025679 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~ 83 (249)
+.++..|+||++.|. ++ ++++|+|.||..||..| ...||+||+.+....
T Consensus 3 e~~~~~C~IC~~~~~--~p-~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 3 EFQFLRCQQCQAEAK--CP-KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp SCCCSSCSSSCSSCB--CC-SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred cccCCCceEeCCccC--Ce-EEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 345789999999996 44 56799999999999874 568999999987553
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.99 E-value=8.3e-11 Score=93.87 Aligned_cols=48 Identities=19% Similarity=0.454 Sum_probs=40.6
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCC-CCCCCcccCCC
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISL 81 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~-~CP~Cr~~i~~ 81 (249)
++..|+||++.|. ++ +.++|||.||..||..|+.... .||+||..+..
T Consensus 30 ~~~~C~IC~~~~~--~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 30 AKYLCSACRNVLR--RP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GGGBCTTTCSBCS--SE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCcCCCCCChhhc--Cc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 3789999999995 44 5579999999999999998654 89999997643
No 57
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.93 E-value=1.2e-09 Score=90.52 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=48.8
Q ss_pred CCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcC-CCCCCCcccCCCCCcchHHHHHH
Q 025679 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEA 92 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~-~~CP~Cr~~i~~~~~~~~~~~~~ 92 (249)
..+..|+||++.|. +| ++++|||.||..||..|+... ..||+|+..+...++.++..+..
T Consensus 104 p~~f~CPI~~elm~--DP-V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~ 164 (179)
T 2f42_A 104 PDYLCGKISFELMR--EP-CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKE 164 (179)
T ss_dssp CGGGBCTTTCSBCS--SE-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHH
T ss_pred cHhhcccCccccCC--CC-eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHH
Confidence 45889999999996 54 556999999999999999764 46999999998877776654443
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.93 E-value=4.6e-10 Score=91.71 Aligned_cols=58 Identities=19% Similarity=0.488 Sum_probs=46.3
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcC-CCCCCCcccCCCCCcchHHHHH
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLE 91 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~-~~CP~Cr~~i~~~~~~~~~~~~ 91 (249)
++..|+||++.|. ++ +.++|||.||..||..|+... ..||+||..+...+......+.
T Consensus 17 ~~~~C~IC~~~~~--~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~ 75 (170)
T 3hcs_A 17 SKYECPICLMALR--EA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAK 75 (170)
T ss_dssp GGGBCTTTCSBCS--SE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHH
T ss_pred CCCCCCCCChhhc--Cc-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHH
Confidence 3789999999995 44 557999999999999999754 5999999999876554444433
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.93 E-value=6.1e-10 Score=102.23 Aligned_cols=48 Identities=25% Similarity=0.619 Sum_probs=41.8
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHh-cCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~-~~~~CP~Cr~~i~~~ 82 (249)
+..|+||++.+. .+++++|||.||..||..|+. ....||+||..+...
T Consensus 332 ~~~C~ICle~~~---~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBC---CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCC---CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 468999999984 456779999999999999998 688999999988654
No 60
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.93 E-value=3.2e-10 Score=98.66 Aligned_cols=59 Identities=24% Similarity=0.550 Sum_probs=49.8
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcC--CCCCC--CcccCCCCCcchHHHHHH
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPM--CWQPISLKDATSQELLEA 92 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~--~~CP~--Cr~~i~~~~~~~~~~~~~ 92 (249)
+..|+||++.|. +|++.+.|||.||..||..|+... ..||+ |++.+...++..+..+..
T Consensus 181 el~CPIcl~~f~--DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~ 243 (267)
T 3htk_C 181 ELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMEL 243 (267)
T ss_dssp CSBCTTTSSBCS--SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHH
T ss_pred eeECcCccCccc--CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHH
Confidence 679999999997 777767999999999999999754 47999 999998888777655443
No 61
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.92 E-value=2.3e-10 Score=81.21 Aligned_cols=43 Identities=28% Similarity=0.719 Sum_probs=37.2
Q ss_pred CCcCccccccccCCCCceeccCCCc-chHHhHHHHHhcCCCCCCCcccCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~-Fc~~Ci~~wl~~~~~CP~Cr~~i~~ 81 (249)
+..|+||++.+. .+++++|||. ||..|+..| ..||+||..+..
T Consensus 24 ~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNI---AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBC---CEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCC---CEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 678999999984 4566799999 999999998 789999998864
No 62
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.91 E-value=4.7e-10 Score=77.21 Aligned_cols=47 Identities=21% Similarity=0.504 Sum_probs=39.7
Q ss_pred CCCcCccccccccCCCCceec--cCCCc-chHHhHHHHHhcCCCCCCCcccCC
Q 025679 31 CDDACSICLEEFSESDPSTVT--SCKHE-FHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~--~C~H~-Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
.+..|.||++.+. + ..++ +|||. ||..|+..|+.....||+||+.+.
T Consensus 6 ~~~~C~IC~~~~~--~-~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPR--D-GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBS--C-EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCC--C-eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3678999999874 3 3444 99998 999999999988889999999885
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=1.9e-09 Score=76.49 Aligned_cols=44 Identities=30% Similarity=0.739 Sum_probs=36.1
Q ss_pred CCcCccccccccCCCCceeccCCCc-chHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~-Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
+..|+||++.+. .+++++|+|. ||..|+.. ...||+||..+...
T Consensus 25 ~~~C~IC~~~~~---~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNI---AIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCC---CBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCC---CEEEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 568999999984 3566799999 99999964 37899999988643
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=8.3e-09 Score=72.05 Aligned_cols=47 Identities=26% Similarity=0.539 Sum_probs=38.4
Q ss_pred CCCCCCcCccccccccCCCCceeccCCCc-chHHhHHHHHhcCCCCCCCcccCCC
Q 025679 28 QDSCDDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (249)
Q Consensus 28 ~~~~d~~C~ICle~~~~~~~~~~~~C~H~-Fc~~Ci~~wl~~~~~CP~Cr~~i~~ 81 (249)
.+.++..|.||++.+ ..+++++|+|. ||..|+.. ...||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~---~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGT---VNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSC---CCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCC---CCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 344578999999987 44677899999 99999973 4789999998864
No 65
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.65 E-value=9.4e-09 Score=70.32 Aligned_cols=51 Identities=14% Similarity=0.328 Sum_probs=42.9
Q ss_pred CCcCccccccccCCCCceec-cCCCcchHHhHHHHHhcCCCCCCCcccCCCCCcc
Q 025679 32 DDACSICLEEFSESDPSTVT-SCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDAT 85 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~-~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~~ 85 (249)
...|+||++.|. ++ +++ +|||.|+..||.+|+..+..||+++.++...++.
T Consensus 3 ~~~CpIs~~~m~--dP-V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 3 HMLCAISGKVPR--RP-VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV 54 (61)
T ss_dssp -CCCTTTCSCCS--SE-EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCE
T ss_pred eEEecCCCCCCC--CC-EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcE
Confidence 468999999996 54 555 8999999999999998878899999999776553
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.64 E-value=4.5e-09 Score=75.55 Aligned_cols=43 Identities=28% Similarity=0.611 Sum_probs=36.3
Q ss_pred CCcCccccccccCCCCceeccCCCc-chHHhHHHHHhcCCCCCCCcccCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~-Fc~~Ci~~wl~~~~~CP~Cr~~i~~ 81 (249)
+..|.||++.+. .+++++|||. ||..|+..| ..||+||..+..
T Consensus 18 ~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEI---NSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBC---CEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccC---cEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 568999999984 4567799999 999999877 399999998854
No 67
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.62 E-value=2.5e-08 Score=67.96 Aligned_cols=51 Identities=24% Similarity=0.570 Sum_probs=39.4
Q ss_pred CCCCCCcCccccccccCCCCceeccCC--C---cchHHhHHHHHhc--CCCCCCCcccCCC
Q 025679 28 QDSCDDACSICLEEFSESDPSTVTSCK--H---EFHLQCVLEWCQR--SSQCPMCWQPISL 81 (249)
Q Consensus 28 ~~~~d~~C~ICle~~~~~~~~~~~~C~--H---~Fc~~Ci~~wl~~--~~~CP~Cr~~i~~ 81 (249)
+++++..|.||++... ++. ++||. + .||..||.+|+.. +..||+|+..|..
T Consensus 2 e~~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 2 EDEDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TTCSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3456789999999843 444 56865 4 8999999999964 5789999998864
No 68
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.61 E-value=8.1e-09 Score=92.90 Aligned_cols=52 Identities=25% Similarity=0.585 Sum_probs=39.5
Q ss_pred CCCCcCccccccccCCCCc-----eeccCCCcchHHhHHHHHhcC-----------CCCCCCcccCCC
Q 025679 30 SCDDACSICLEEFSESDPS-----TVTSCKHEFHLQCVLEWCQRS-----------SQCPMCWQPISL 81 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~-----~~~~C~H~Fc~~Ci~~wl~~~-----------~~CP~Cr~~i~~ 81 (249)
+....|+||++.+.++..+ ....|+|.||..||.+|+... ..||+||.++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4467899999998752211 124799999999999999642 369999998863
No 69
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.59 E-value=1.4e-08 Score=74.99 Aligned_cols=48 Identities=23% Similarity=0.654 Sum_probs=36.8
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHhc--------CCCCCC--Cccc
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--------SSQCPM--CWQP 78 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~--------~~~CP~--Cr~~ 78 (249)
++.+|+||++.+.......+++|+|.||..||..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 36789999999863222333479999999999999853 136999 9988
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.49 E-value=2.4e-08 Score=90.59 Aligned_cols=43 Identities=21% Similarity=0.624 Sum_probs=37.2
Q ss_pred CCcCccccccccCCCCceeccCCCc-chHHhHHHHHhcCCCCCCCcccCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~-Fc~~Ci~~wl~~~~~CP~Cr~~i~~ 81 (249)
+..|+||++.+. .++.++|||. ||..|+..| ..||+||..+..
T Consensus 295 ~~~C~IC~~~~~---~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEV---SVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBC---CEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCC---ceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 679999999984 3566699999 999999988 789999998864
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.23 E-value=5.8e-07 Score=66.82 Aligned_cols=46 Identities=24% Similarity=0.569 Sum_probs=39.2
Q ss_pred cCccccccccCCCCceeccCCCcchHHhHHHHHhc-CCCCCCCcccCCC
Q 025679 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISL 81 (249)
Q Consensus 34 ~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~-~~~CP~Cr~~i~~ 81 (249)
.|.+|--.+. ...+++||+|.||+.|+..|.++ .+.||.|+..+..
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 5888988886 55678899999999999999864 6789999998864
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.92 E-value=7e-06 Score=70.69 Aligned_cols=51 Identities=24% Similarity=0.569 Sum_probs=41.3
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcC--CCCCCCcccCCCCCc
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPISLKDA 84 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~--~~CP~Cr~~i~~~~~ 84 (249)
-..|.||.+.+..+ .....|+|.||..|+..|+... ..||.|+..|....+
T Consensus 180 i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp CCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 56899999998743 4454599999999999999764 489999999876543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.43 E-value=0.0011 Score=48.38 Aligned_cols=45 Identities=29% Similarity=0.670 Sum_probs=36.9
Q ss_pred CcCccccccccCCCCceeccC-CCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 33 DACSICLEEFSESDPSTVTSC-KHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~~~~C-~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
..|..|+-..+ . ++.| .|.+|..||...|..+..||+|+.++..+
T Consensus 29 ~nCKsCWf~~k----~-LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 29 QFCKSCWFENK----G-LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCSSCSCCS----S-EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred ccChhhccccC----C-eeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 47999997753 2 3355 69999999999999999999999998755
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.12 E-value=0.0026 Score=46.74 Aligned_cols=34 Identities=12% Similarity=0.347 Sum_probs=26.1
Q ss_pred CCCcCccccccccCCCCcee--ccCCCcchHHhHHHHH
Q 025679 31 CDDACSICLEEFSESDPSTV--TSCKHEFHLQCVLEWC 66 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~--~~C~H~Fc~~Ci~~wl 66 (249)
++..|.||++.+. .+++. +.|+|.||..|+..|.
T Consensus 2 ee~~C~~C~~~~~--~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPA--QDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSC--CBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCC--CCceEECCcCChHHhHHHCHHHh
Confidence 4689999998643 23333 8999999999999843
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.52 E-value=0.09 Score=35.86 Aligned_cols=48 Identities=21% Similarity=0.479 Sum_probs=33.6
Q ss_pred CCCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcC----CCCCCCcccC
Q 025679 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMCWQPI 79 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~----~~CP~Cr~~i 79 (249)
...+..|.||.+. ++-+.--.|...||..|+...+... -.||.|....
T Consensus 9 ~~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 9 LAPGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3446789999864 2333334688999999998777543 3699997654
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=91.82 E-value=0.13 Score=46.56 Aligned_cols=62 Identities=27% Similarity=0.494 Sum_probs=45.6
Q ss_pred CCcCccccccccCCCCceeccCCCc--chHHhHHHHHhc--CCCCCCCcccCCCCCcchHHHHHHHHH
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHE--FHLQCVLEWCQR--SSQCPMCWQPISLKDATSQELLEAVEQ 95 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~--Fc~~Ci~~wl~~--~~~CP~Cr~~i~~~~~~~~~~~~~~~~ 95 (249)
.+.|||-+..|. .|++-..|.|. |-..-+..+..+ .-.||+|.+.+...++.....+..+.+
T Consensus 249 SL~CPlS~~ri~--~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 249 SLQCPISYTRMK--YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp ESBCTTTSSBCS--SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred eecCCCcccccc--ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 468999888886 78888899998 444444444333 347999999999998887776665543
No 77
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=91.14 E-value=0.18 Score=45.59 Aligned_cols=62 Identities=16% Similarity=0.359 Sum_probs=46.3
Q ss_pred CCcCccccccccCCCCceeccCCCc--chHHhHHHHHhc--CCCCCCCcccCCCCCcchHHHHHHHHH
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHE--FHLQCVLEWCQR--SSQCPMCWQPISLKDATSQELLEAVEQ 95 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~--Fc~~Ci~~wl~~--~~~CP~Cr~~i~~~~~~~~~~~~~~~~ 95 (249)
.+.|||-+..|. .|++...|.|. |-..-+..+..+ .-.||+|.+.+...++.....+..+.+
T Consensus 215 SL~CPlS~~ri~--~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 215 SLMCPLGKMRLT--IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp ESBCTTTCSBCS--SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred eeeCCCccceec--cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 457999888886 78888899998 555444444443 347999999999998887777666543
No 78
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=91.05 E-value=0.2 Score=50.69 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=47.2
Q ss_pred CCCCcCccccccccCCCCceeccCC-CcchHHhHHHHHhcCCCCCCCcccCCCCCcchHHH
Q 025679 30 SCDDACSICLEEFSESDPSTVTSCK-HEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQEL 89 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~~C~-H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~~~~~~~ 89 (249)
.++..|||-++.|. +| ++++.| +.|-..+|.+|+....+||+=|.++...+..++..
T Consensus 889 P~~F~cPIs~~lM~--DP-VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~ 946 (968)
T 3m62_A 889 PDEFLDPLMYTIMK--DP-VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEE 946 (968)
T ss_dssp CGGGBCTTTCSBCS--SE-EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHH
T ss_pred cHHhCCcchhhHHh--CC-eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHH
Confidence 44788999999995 54 556887 68999999999998889999999998877766543
No 79
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=90.68 E-value=0.14 Score=36.32 Aligned_cols=39 Identities=23% Similarity=0.410 Sum_probs=27.0
Q ss_pred CCCCcCccccccccCCCCceec-cCCCcchHHhHHHHHhc
Q 025679 30 SCDDACSICLEEFSESDPSTVT-SCKHEFHLQCVLEWCQR 68 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~-~C~H~Fc~~Ci~~wl~~ 68 (249)
...+.|.+|.+.+.+.--+... .=.|.||+.|-+..++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 3467899999999742212111 12799999999998864
No 80
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=90.58 E-value=0.49 Score=34.07 Aligned_cols=54 Identities=17% Similarity=0.348 Sum_probs=37.8
Q ss_pred CCCCCCCcCccccccccCCCC--cee--ccCCCcchHHhHHH-HHhcCCCCCCCcccCC
Q 025679 27 IQDSCDDACSICLEEFSESDP--STV--TSCKHEFHLQCVLE-WCQRSSQCPMCWQPIS 80 (249)
Q Consensus 27 ~~~~~d~~C~ICle~~~~~~~--~~~--~~C~H~Fc~~Ci~~-wl~~~~~CP~Cr~~i~ 80 (249)
+.......|.||-+.+..... +.+ -.|+--.|..|+.- +-+.++.||.|+..++
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 333345689999998753221 222 36777899999874 4456789999999885
No 81
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=88.18 E-value=0.38 Score=34.33 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=23.7
Q ss_pred CCCCCcCccccccccCCCCceeccCCCcchHHhHHHH
Q 025679 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEW 65 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~w 65 (249)
...|+.|.||-..-. +.-.-.--|+-.||..||.+.
T Consensus 12 ~~~D~~C~VC~~~t~-~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWTA-ESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCCS-SCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccccccc-cceeccccccccccHhhcccc
Confidence 345889999984321 111112247889999999996
No 82
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.10 E-value=0.22 Score=33.20 Aligned_cols=49 Identities=18% Similarity=0.565 Sum_probs=33.1
Q ss_pred CCCCCCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhc----CCCCCCCcc
Q 025679 26 GIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQ 77 (249)
Q Consensus 26 ~~~~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~----~~~CP~Cr~ 77 (249)
.+.+..+..|.||... ++-+.--.|...||..|+..-+.. .-.||.|..
T Consensus 5 ~~~~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 5 SYETDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cccCCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3455668899999874 222222367789999999875432 236999965
No 83
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=88.00 E-value=0.072 Score=35.77 Aligned_cols=49 Identities=22% Similarity=0.488 Sum_probs=32.7
Q ss_pred CCCCcCccccccccCCCCc-eeccCCCcchHHhHHHHHh-----cCCCCCCCccc
Q 025679 30 SCDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQ-----RSSQCPMCWQP 78 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~-~~~~C~H~Fc~~Ci~~wl~-----~~~~CP~Cr~~ 78 (249)
+++..|+||...+.++... ..-.|...||..|+.--.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4577899999887433322 2246888999999864321 34679998653
No 84
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=84.78 E-value=0.17 Score=35.01 Aligned_cols=50 Identities=22% Similarity=0.372 Sum_probs=32.5
Q ss_pred CCCCcCccccccccCCCCc-eeccCCCcchHHhHHHHHh----cCCCCCCCcccCC
Q 025679 30 SCDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQ----RSSQCPMCWQPIS 80 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~-~~~~C~H~Fc~~Ci~~wl~----~~~~CP~Cr~~i~ 80 (249)
.+...|.||..... +..+ ..-.|...||..|+..-.. ....||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34567999987642 2222 2236888999999875442 2357999976553
No 85
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=84.22 E-value=0.21 Score=40.53 Aligned_cols=47 Identities=21% Similarity=0.526 Sum_probs=32.7
Q ss_pred CCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhc----CCCCCCCcccC
Q 025679 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQPI 79 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~----~~~CP~Cr~~i 79 (249)
.+++.|.||.+. ++-+..-.|...||..|+...+.. .-.||.|+...
T Consensus 2 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 357889999865 233333468889999998765543 23699998754
No 86
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=83.70 E-value=0.32 Score=36.12 Aligned_cols=48 Identities=25% Similarity=0.441 Sum_probs=31.4
Q ss_pred CCCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhc----CCCCCCCc
Q 025679 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCW 76 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~----~~~CP~Cr 76 (249)
..+++.|.||.+.-...+-+.-..|...||..||..++.. .-.||.|+
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4468899999876321111344578999999999876532 23466654
No 87
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=83.12 E-value=0.49 Score=34.11 Aligned_cols=53 Identities=26% Similarity=0.533 Sum_probs=35.6
Q ss_pred cCCCCCCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhc----CCCCCCCcccCC
Q 025679 25 GGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQPIS 80 (249)
Q Consensus 25 ~~~~~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~----~~~CP~Cr~~i~ 80 (249)
....+.+++.|.||... ++-+..-.|.-.||..|+..=+.. .-.||.|...-.
T Consensus 18 ~~~~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 18 FGTLDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp CCSSSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred ccccCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 34556678899999975 232333467778999999765533 236999976543
No 88
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=80.76 E-value=0.31 Score=32.44 Aligned_cols=47 Identities=21% Similarity=0.578 Sum_probs=31.4
Q ss_pred CCCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhc----CCCCCCCccc
Q 025679 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQP 78 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~----~~~CP~Cr~~ 78 (249)
+.++..|.||.+. ++-+.--.|...||..|+..-+.. .-.||.|...
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4457889999863 232333468889999999854432 2369999654
No 89
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.44 E-value=0.44 Score=33.00 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=30.8
Q ss_pred CCCCcCccccccccCCCCceeccCCCcchHHhHHHHH---------hcCCCCCCCcccC
Q 025679 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC---------QRSSQCPMCWQPI 79 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl---------~~~~~CP~Cr~~i 79 (249)
.+...| ||......+.-+..-.|...||..|+.--. .....||.|+...
T Consensus 14 ~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 14 PNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 335667 898876421112224688999999985211 2467899997543
No 90
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=78.44 E-value=0.99 Score=28.53 Aligned_cols=44 Identities=25% Similarity=0.587 Sum_probs=27.3
Q ss_pred cCccccccccCCCCceeccCCCcchHHhHHHHHhc----CCCCCCCcc
Q 025679 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQ 77 (249)
Q Consensus 34 ~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~----~~~CP~Cr~ 77 (249)
.|.||...-..++-+.--.|...||..|+..=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58888865321122333468889999999653322 235999964
No 91
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=77.61 E-value=0.34 Score=40.14 Aligned_cols=48 Identities=25% Similarity=0.527 Sum_probs=32.4
Q ss_pred CCCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhc----CCCCCCCcccC
Q 025679 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQPI 79 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~----~~~CP~Cr~~i 79 (249)
+..++.|.||... ++-+..-.|...||..|+...+.. .-.||.|+..-
T Consensus 4 d~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4457889999864 121222357889999999765543 23699998654
No 92
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=77.40 E-value=0.74 Score=30.60 Aligned_cols=43 Identities=21% Similarity=0.508 Sum_probs=30.2
Q ss_pred CcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCC
Q 025679 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~C 75 (249)
..|..|...|.+........|++.||..|=.-.-+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4699999998532113346899999999954433555689988
No 93
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.23 E-value=1.3 Score=32.06 Aligned_cols=49 Identities=22% Similarity=0.455 Sum_probs=29.6
Q ss_pred CCCCCCCcCccccccccCCCCceecc--CC-CcchHHhHHHHHh----cCCCCCCCcccC
Q 025679 27 IQDSCDDACSICLEEFSESDPSTVTS--CK-HEFHLQCVLEWCQ----RSSQCPMCWQPI 79 (249)
Q Consensus 27 ~~~~~d~~C~ICle~~~~~~~~~~~~--C~-H~Fc~~Ci~~wl~----~~~~CP~Cr~~i 79 (249)
+..++...| ||..... +.-+..-. |. ..||..|+. |. ....||.|+...
T Consensus 31 ~d~~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 31 VDPNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCSCCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred cCCCCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 334456677 9998642 22111223 55 589999986 32 235799997654
No 94
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.24 E-value=1.4 Score=30.70 Aligned_cols=48 Identities=21% Similarity=0.387 Sum_probs=30.8
Q ss_pred CCCcCccccccccCCCCc-eeccCCCcchHHhHHHHHh-----cCCCCCCCcccC
Q 025679 31 CDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQ-----RSSQCPMCWQPI 79 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~-~~~~C~H~Fc~~Ci~~wl~-----~~~~CP~Cr~~i 79 (249)
+...| ||.....++... ..-.|...||..|+.--.. ....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 35566 998876422222 2346888999999853221 346899997654
No 95
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=76.05 E-value=0.65 Score=37.95 Aligned_cols=48 Identities=17% Similarity=0.369 Sum_probs=33.0
Q ss_pred CcCccccccccCCCC---c-eeccCCCcchHHhHHHH------Hh-----cCCCCCCCcccCC
Q 025679 33 DACSICLEEFSESDP---S-TVTSCKHEFHLQCVLEW------CQ-----RSSQCPMCWQPIS 80 (249)
Q Consensus 33 ~~C~ICle~~~~~~~---~-~~~~C~H~Fc~~Ci~~w------l~-----~~~~CP~Cr~~i~ 80 (249)
..|+||...+.+++. . ..-.|...||..|+.-- +. ....||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 469999998875542 2 22468899999998421 11 2678999987543
No 96
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=75.75 E-value=0.57 Score=32.69 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=31.4
Q ss_pred CCCCCCCcCccccccccCCCCceec--cCCCcchHHhHHHHH---------hcCCCCCCCcccC
Q 025679 27 IQDSCDDACSICLEEFSESDPSTVT--SCKHEFHLQCVLEWC---------QRSSQCPMCWQPI 79 (249)
Q Consensus 27 ~~~~~d~~C~ICle~~~~~~~~~~~--~C~H~Fc~~Ci~~wl---------~~~~~CP~Cr~~i 79 (249)
+..++...| ||-.....+.=+..- .|...||..|+.--- .....||.|+...
T Consensus 11 ~~~~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 11 FQPEIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp SSCCCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred cCCCCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 333456678 899874322112223 688899999985321 1356799997644
No 97
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=74.55 E-value=1.7 Score=29.42 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=25.1
Q ss_pred CCCCCcCccccccccCCCCceeccC-CCcchHHhHHHH
Q 025679 29 DSCDDACSICLEEFSESDPSTVTSC-KHEFHLQCVLEW 65 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~~~~~~~C-~H~Fc~~Ci~~w 65 (249)
+++..-|.||.++- .++.+-| +-.||..|..+.
T Consensus 5 ~ee~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNEDA----TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSCC----CEEETTTTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCCC----eEEecCCCCceehHHHHHHH
Confidence 44567799999983 3677788 679999997664
No 98
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=73.73 E-value=2.4 Score=28.46 Aligned_cols=33 Identities=27% Similarity=0.568 Sum_probs=23.1
Q ss_pred CCCcCccccccccCCCCcee-c-cCCCcchHHhHH
Q 025679 31 CDDACSICLEEFSESDPSTV-T-SCKHEFHLQCVL 63 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~-~-~C~H~Fc~~Ci~ 63 (249)
....|.+|...+.++...+. - .|.-.||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 35689999999864444332 3 688899999974
No 99
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.71 E-value=0.29 Score=31.90 Aligned_cols=45 Identities=24% Similarity=0.589 Sum_probs=29.2
Q ss_pred CCCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhc----CCCCCCCc
Q 025679 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCW 76 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~----~~~CP~Cr 76 (249)
+.++..|.||... ++-+.--.|...||..|+..-+.. .-.||.|.
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 3457889999975 233333468889999998754332 22477764
No 100
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=71.61 E-value=1.7 Score=29.80 Aligned_cols=47 Identities=23% Similarity=0.429 Sum_probs=28.9
Q ss_pred CCCCCCcCccccccccCCCCcee-cc--CC-CcchHHhHHHHHh----cCCCCCCCcccC
Q 025679 28 QDSCDDACSICLEEFSESDPSTV-TS--CK-HEFHLQCVLEWCQ----RSSQCPMCWQPI 79 (249)
Q Consensus 28 ~~~~d~~C~ICle~~~~~~~~~~-~~--C~-H~Fc~~Ci~~wl~----~~~~CP~Cr~~i 79 (249)
..++...| ||..... + .++. -. |. ..||..|+. |. ....||.|+...
T Consensus 12 d~~~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 12 DPNEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CTTSCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34456678 8988642 2 2211 13 55 589999997 32 234799997654
No 101
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=70.62 E-value=1 Score=32.84 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=28.1
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHh---cCCCCCCCcc
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---RSSQCPMCWQ 77 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~---~~~~CP~Cr~ 77 (249)
...| ||......+.-+..-.|...||..|+..-+. ....||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3457 8877654322223346888999999864322 2357999964
No 102
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=69.30 E-value=2 Score=28.83 Aligned_cols=49 Identities=22% Similarity=0.634 Sum_probs=32.2
Q ss_pred CCCCCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhc----CCCCCCCccc
Q 025679 27 IQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQP 78 (249)
Q Consensus 27 ~~~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~----~~~CP~Cr~~ 78 (249)
+.+.+++.|.||.+. ++-+..-.|...||..|+..-+.. .-.||.|...
T Consensus 3 ~~~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 3 MAQKNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred cCCCCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 345568899999964 233333468889999998754332 2358888543
No 103
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=69.25 E-value=4.3 Score=31.67 Aligned_cols=46 Identities=24% Similarity=0.521 Sum_probs=31.9
Q ss_pred CCCCCcCccccccccCCCCceeccCCCcchHHhHHHHHh-----------cCCCCCCCcc
Q 025679 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-----------RSSQCPMCWQ 77 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~-----------~~~~CP~Cr~ 77 (249)
+..++.|.||.+-- +-+-.-.|-..||..||..-+. ..-.||+|..
T Consensus 60 Dg~~d~C~vC~~GG---~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCS---SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCC---cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 55688999999752 2222236788999999996542 1236999964
No 104
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=69.05 E-value=0.32 Score=34.95 Aligned_cols=55 Identities=22% Similarity=0.329 Sum_probs=33.1
Q ss_pred CCCCCcCccccccccCC-CC-ceeccCCCcchHHhHHHHHh--cCCCCCCCcccCCCCC
Q 025679 29 DSCDDACSICLEEFSES-DP-STVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQPISLKD 83 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~-~~-~~~~~C~H~Fc~~Ci~~wl~--~~~~CP~Cr~~i~~~~ 83 (249)
.+++..|.||...-... +. +..-.|.-.||..|+..-+. ..-.||.|......+.
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~ 80 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPA 80 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhh
Confidence 34578999999753111 11 12235777999999974321 2336898876554443
No 105
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=68.73 E-value=1.6 Score=27.77 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=27.7
Q ss_pred cCccccccccCCCCcee-c-cCCCcchHHhHHHHH----hcCCCCCCCc
Q 025679 34 ACSICLEEFSESDPSTV-T-SCKHEFHLQCVLEWC----QRSSQCPMCW 76 (249)
Q Consensus 34 ~C~ICle~~~~~~~~~~-~-~C~H~Fc~~Ci~~wl----~~~~~CP~Cr 76 (249)
.|.||...+.++...+. - .|...||..|+.--. .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 57789888754333322 3 577899999975321 2467899885
No 106
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=68.43 E-value=0.88 Score=36.32 Aligned_cols=50 Identities=24% Similarity=0.393 Sum_probs=30.7
Q ss_pred CCCCCCcCccccccccCCCC-ceeccCCCcchHHhHHHHH-----hcCCCCCCCccc
Q 025679 28 QDSCDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWC-----QRSSQCPMCWQP 78 (249)
Q Consensus 28 ~~~~d~~C~ICle~~~~~~~-~~~~~C~H~Fc~~Ci~~wl-----~~~~~CP~Cr~~ 78 (249)
.+++...| ||.....++.. +..-.|...||..|+.--. .....||.|+..
T Consensus 4 ~~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 4 GSDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp ---CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34557789 99987532222 2234688899999985221 134679999753
No 107
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=68.22 E-value=6.8 Score=28.91 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=21.6
Q ss_pred CCcCcccccccc------CCCCceeccCCCcchHHhHH
Q 025679 32 DDACSICLEEFS------ESDPSTVTSCKHEFHLQCVL 63 (249)
Q Consensus 32 d~~C~ICle~~~------~~~~~~~~~C~H~Fc~~Ci~ 63 (249)
...|.||+..-. .++-+.-..|+..||..||.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 568999987521 11223345789999999995
No 108
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=63.03 E-value=3.3 Score=30.70 Aligned_cols=51 Identities=18% Similarity=0.374 Sum_probs=30.7
Q ss_pred CCCCCCCCcCccccccccCCCCcee-c--cCCCcchHHhHHHHHhc----CCCCCCCcccCCCC
Q 025679 26 GIQDSCDDACSICLEEFSESDPSTV-T--SCKHEFHLQCVLEWCQR----SSQCPMCWQPISLK 82 (249)
Q Consensus 26 ~~~~~~d~~C~ICle~~~~~~~~~~-~--~C~H~Fc~~Ci~~wl~~----~~~CP~Cr~~i~~~ 82 (249)
.-++.+++.|.+|.+. ..+.. - .|-..||..|+. |.. .-.||.|.-.+..+
T Consensus 9 ~~~~~~~~~C~~C~~~----G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDG----GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp -CCCSSCSSCTTTCCC----SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCcCCCCCCCCcCCCC----CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 3344568899999843 22222 1 366899999987 432 22588776555443
No 109
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=61.32 E-value=3.8 Score=30.11 Aligned_cols=48 Identities=21% Similarity=0.466 Sum_probs=31.9
Q ss_pred CCcCccccccccCCCCcee-c-cCCCcchHHhHHHHH----------hcCCCCCCCcccC
Q 025679 32 DDACSICLEEFSESDPSTV-T-SCKHEFHLQCVLEWC----------QRSSQCPMCWQPI 79 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~-~-~C~H~Fc~~Ci~~wl----------~~~~~CP~Cr~~i 79 (249)
...|.||...+.++..... - .|...||..|+.--. .....||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 3579999999754333333 2 578899999985211 0346799997653
No 110
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=61.18 E-value=3.1 Score=30.47 Aligned_cols=12 Identities=25% Similarity=0.852 Sum_probs=10.6
Q ss_pred cchHHhHHHHHh
Q 025679 56 EFHLQCVLEWCQ 67 (249)
Q Consensus 56 ~Fc~~Ci~~wl~ 67 (249)
-||..||.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 111
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=61.08 E-value=3.1 Score=30.40 Aligned_cols=12 Identities=25% Similarity=0.886 Sum_probs=10.7
Q ss_pred cchHHhHHHHHh
Q 025679 56 EFHLQCVLEWCQ 67 (249)
Q Consensus 56 ~Fc~~Ci~~wl~ 67 (249)
-||..||.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 112
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=60.15 E-value=2.4 Score=28.10 Aligned_cols=50 Identities=24% Similarity=0.551 Sum_probs=31.1
Q ss_pred CCCCcCccccccccC--CCCceeccCCCcchHHhHHHHHh-------cCCCCCCCcccC
Q 025679 30 SCDDACSICLEEFSE--SDPSTVTSCKHEFHLQCVLEWCQ-------RSSQCPMCWQPI 79 (249)
Q Consensus 30 ~~d~~C~ICle~~~~--~~~~~~~~C~H~Fc~~Ci~~wl~-------~~~~CP~Cr~~i 79 (249)
.++..|.||...... +.-+.--.|...||..|+..-+. ..-.|+.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 457899999976422 11122246788999999875321 223688886543
No 113
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.14 E-value=1.7 Score=30.22 Aligned_cols=46 Identities=17% Similarity=0.454 Sum_probs=27.4
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhc-----CCCCCCCcc
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----SSQCPMCWQ 77 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~-----~~~CP~Cr~ 77 (249)
+..|.||...-..++-+.--.|...||..||..-|.. .-.||.|..
T Consensus 26 ~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3478888864211121222368889999999753322 236888854
No 114
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=57.97 E-value=2.1 Score=34.85 Aligned_cols=45 Identities=27% Similarity=0.591 Sum_probs=30.0
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhc----CCCCCCCcccC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQPI 79 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~----~~~CP~Cr~~i 79 (249)
++.|.+|... ++-+..-.|...||..|+..=+.. .-.||.|+..-
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 5689999965 233333467789999999654432 23699997653
No 115
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=57.45 E-value=3.8 Score=31.63 Aligned_cols=34 Identities=18% Similarity=0.468 Sum_probs=23.7
Q ss_pred CCCCcCcccccccc-CCC-CceeccCCCcchHHhHH
Q 025679 30 SCDDACSICLEEFS-ESD-PSTVTSCKHEFHLQCVL 63 (249)
Q Consensus 30 ~~d~~C~ICle~~~-~~~-~~~~~~C~H~Fc~~Ci~ 63 (249)
..+..|.+|...|. ... ......|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 35789999999983 212 23445788988888753
No 116
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=57.16 E-value=8.4 Score=26.20 Aligned_cols=50 Identities=26% Similarity=0.383 Sum_probs=29.6
Q ss_pred CCCCCCcCcccccccc-CCCCc-eeccCCCcchHHhHHHHHh--cCCCCCCCcc
Q 025679 28 QDSCDDACSICLEEFS-ESDPS-TVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQ 77 (249)
Q Consensus 28 ~~~~d~~C~ICle~~~-~~~~~-~~~~C~H~Fc~~Ci~~wl~--~~~~CP~Cr~ 77 (249)
...+++.|.||...-. +.+.+ ..-.|.-.||..|+..-.. ..-.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3445889999987531 11222 2236888999999864221 1235777743
No 117
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=57.00 E-value=6.8 Score=27.40 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=26.6
Q ss_pred CCCCCCcCccccccccCCC-CceeccCCCcchHHhHHHH
Q 025679 28 QDSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEW 65 (249)
Q Consensus 28 ~~~~d~~C~ICle~~~~~~-~~~~~~C~H~Fc~~Ci~~w 65 (249)
.+.+-..|.+|...|..-. .-..-.||.+||..|....
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3444668999999986322 2344579999999997543
No 118
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=56.97 E-value=5 Score=31.67 Aligned_cols=48 Identities=15% Similarity=0.320 Sum_probs=31.0
Q ss_pred CCCCcCcccccccc--CCCCceeccCCCcchHHhHHHHHhcC--CCCCCCccc
Q 025679 30 SCDDACSICLEEFS--ESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQP 78 (249)
Q Consensus 30 ~~d~~C~ICle~~~--~~~~~~~~~C~H~Fc~~Ci~~wl~~~--~~CP~Cr~~ 78 (249)
..+..|.+|...|. .+.......|.|.+|..|-. |+... -.|-+|++.
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 34789999999864 22334556899999999962 33211 246666543
No 119
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=56.18 E-value=5.6 Score=30.16 Aligned_cols=36 Identities=22% Similarity=0.462 Sum_probs=25.2
Q ss_pred CCCCCcCccccccccCC-CCceeccCCCcchHHhHHH
Q 025679 29 DSCDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLE 64 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~-~~~~~~~C~H~Fc~~Ci~~ 64 (249)
+.+-..|.+|...|..- ..-..-.||++||..|...
T Consensus 66 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 66 DNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 33345799999998632 2234568999999999654
No 120
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=55.54 E-value=0.76 Score=34.99 Aligned_cols=50 Identities=20% Similarity=0.519 Sum_probs=30.9
Q ss_pred CCCCCcCccccccccCC-CCceeccCCCcchHHhHHHHHhcCCCCCCCccc
Q 025679 29 DSCDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~-~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~ 78 (249)
+.....|.+|...|..- ..-..-.||.+||..|..........|-.|...
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 44456899999988521 123446899999999987665556678777554
No 121
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=55.10 E-value=5.1 Score=26.09 Aligned_cols=47 Identities=23% Similarity=0.529 Sum_probs=30.8
Q ss_pred CCCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhc----CCCCCCCccc
Q 025679 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQP 78 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~----~~~CP~Cr~~ 78 (249)
+..+..|.||... ++-+.--.|...||..|+..-+.. .-.||.|...
T Consensus 2 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 2 MIHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 3457899999974 233333468889999999754332 2258888543
No 122
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=54.29 E-value=6.5 Score=27.94 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=25.3
Q ss_pred CCCcCccccccccCCC-CceeccCCCcchHHhHHHH
Q 025679 31 CDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEW 65 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~-~~~~~~C~H~Fc~~Ci~~w 65 (249)
+-..|.+|...|..-. .-..-.||++||..|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 3457999999886322 2344689999999997654
No 123
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.47 E-value=7.6 Score=27.12 Aligned_cols=35 Identities=20% Similarity=0.449 Sum_probs=24.3
Q ss_pred CCCCCcCccccccccCC-CCceeccCCCcchHHhHH
Q 025679 29 DSCDDACSICLEEFSES-DPSTVTSCKHEFHLQCVL 63 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~-~~~~~~~C~H~Fc~~Ci~ 63 (249)
|++-..|.+|...|..- ..-..-.||.+||..|..
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 34456899999998532 123445799999999854
No 124
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=53.44 E-value=6.8 Score=27.26 Aligned_cols=36 Identities=31% Similarity=0.535 Sum_probs=25.3
Q ss_pred CCCCCcCccccccccCC-CCceeccCCCcchHHhHHH
Q 025679 29 DSCDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLE 64 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~-~~~~~~~C~H~Fc~~Ci~~ 64 (249)
+.+-..|.+|...|..- ..-..-.||.+||..|...
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 33455799999998632 1234457999999999754
No 125
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=53.43 E-value=2.8 Score=37.93 Aligned_cols=49 Identities=16% Similarity=0.311 Sum_probs=0.0
Q ss_pred CCCcCccccccccCC-CCceeccCCCcchHHhHHHHHh-------cCCCCCCCcccC
Q 025679 31 CDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQ-------RSSQCPMCWQPI 79 (249)
Q Consensus 31 ~d~~C~ICle~~~~~-~~~~~~~C~H~Fc~~Ci~~wl~-------~~~~CP~Cr~~i 79 (249)
....|.+|...|..- ..-..-.||+.||..|...++. ....|-.|...+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 356899999988522 1234457999999999976641 124577775544
No 126
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=53.26 E-value=2.6 Score=35.53 Aligned_cols=46 Identities=22% Similarity=0.456 Sum_probs=25.1
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhc-----CCCCCCCcc
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----SSQCPMCWQ 77 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~-----~~~CP~Cr~ 77 (249)
+..|.||...-..+.-+..-.|...||..|+..=|.. .-.||.|..
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3368888753211122333468889999999854432 225999964
No 127
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=51.21 E-value=3.6 Score=30.44 Aligned_cols=44 Identities=27% Similarity=0.578 Sum_probs=26.8
Q ss_pred cCccccccccCCCC-ceeccCCCcchHHhHHHHHhc----CCCCCCCcc
Q 025679 34 ACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQR----SSQCPMCWQ 77 (249)
Q Consensus 34 ~C~ICle~~~~~~~-~~~~~C~H~Fc~~Ci~~wl~~----~~~CP~Cr~ 77 (249)
.|.||...-.+... +.--.|...||..|+..-|.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 57777764221112 222368899999999754432 236999974
No 128
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.45 E-value=3.8 Score=29.41 Aligned_cols=50 Identities=20% Similarity=0.430 Sum_probs=30.6
Q ss_pred CCCCCCcCccccccccCCCCceeccCCCcchHHhHHHHHhc----CCCCCCCcc
Q 025679 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQ 77 (249)
Q Consensus 28 ~~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~----~~~CP~Cr~ 77 (249)
+..++..|.||...-..+.-+..-.|...||..|+..=+.. .-.||.|..
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 44457789999976321112233468889999998643322 225888854
No 129
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=49.70 E-value=2.3 Score=28.99 Aligned_cols=26 Identities=27% Similarity=0.644 Sum_probs=18.3
Q ss_pred cCCCcchHHhHHHHHhc-----CCCCCCCcc
Q 025679 52 SCKHEFHLQCVLEWCQR-----SSQCPMCWQ 77 (249)
Q Consensus 52 ~C~H~Fc~~Ci~~wl~~-----~~~CP~Cr~ 77 (249)
.|...||..||..=|.. .-.||.|..
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 38 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 57789999999854322 236888864
No 130
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=48.18 E-value=4.7 Score=29.84 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=20.8
Q ss_pred CCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 46 DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 46 ~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
.+.....||+.|. .-+.....||.|+......
T Consensus 66 ~p~~C~~CG~~F~-----~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 66 KPAQCRKCGFVFK-----AEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp CCCBBTTTCCBCC-----CCSSCCSSCSSSCCCCBCC
T ss_pred ECcChhhCcCeec-----ccCCCCCCCcCCCCCccCC
Confidence 4456678999991 1123346799999876543
No 131
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=47.28 E-value=15 Score=28.13 Aligned_cols=46 Identities=24% Similarity=0.528 Sum_probs=30.0
Q ss_pred CCCCCcCccccccccCCCCceeccCCCcchHHhHHHHH------h-----cCCCCCCCcc
Q 025679 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC------Q-----RSSQCPMCWQ 77 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl------~-----~~~~CP~Cr~ 77 (249)
+..++.|.||.+-- +-+---.|-..||..||..-+ . ..-.|++|.-
T Consensus 54 Dg~~~~C~vC~dGG---~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCS---EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCC---eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 44578899999752 111113678899999999642 1 1236999944
No 132
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=47.09 E-value=7.4 Score=32.14 Aligned_cols=33 Identities=24% Similarity=0.510 Sum_probs=24.4
Q ss_pred CCcCccccccccCC-CCceeccCCCcchHHhHHH
Q 025679 32 DDACSICLEEFSES-DPSTVTSCKHEFHLQCVLE 64 (249)
Q Consensus 32 d~~C~ICle~~~~~-~~~~~~~C~H~Fc~~Ci~~ 64 (249)
+..|.+|...|..- ..-..-.||+.||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 57999999988532 2245567999999999654
No 133
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=46.33 E-value=9.4 Score=28.24 Aligned_cols=33 Identities=18% Similarity=0.404 Sum_probs=22.1
Q ss_pred CcCcccccccc----CC---CCceeccCCCcchHHhHHHH
Q 025679 33 DACSICLEEFS----ES---DPSTVTSCKHEFHLQCVLEW 65 (249)
Q Consensus 33 ~~C~ICle~~~----~~---~~~~~~~C~H~Fc~~Ci~~w 65 (249)
+.|.||+..-. .+ +-+.-..|+..||..||..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 57999987541 11 12333578899999998754
No 134
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=46.32 E-value=10 Score=26.88 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=23.9
Q ss_pred CCcCccccccccCCC-CceeccCCCcchHHhHHH
Q 025679 32 DDACSICLEEFSESD-PSTVTSCKHEFHLQCVLE 64 (249)
Q Consensus 32 d~~C~ICle~~~~~~-~~~~~~C~H~Fc~~Ci~~ 64 (249)
...|.+|...|..-. .-..-.||.+||..|...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 458999999986322 133457999999999754
No 135
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=45.97 E-value=10 Score=25.64 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=23.6
Q ss_pred CCcCccccccccCC-CCceeccCCCcchHHhHHH
Q 025679 32 DDACSICLEEFSES-DPSTVTSCKHEFHLQCVLE 64 (249)
Q Consensus 32 d~~C~ICle~~~~~-~~~~~~~C~H~Fc~~Ci~~ 64 (249)
+..|.+|...|..- ..-.--.||.+||..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 45899999988532 1234457999999999643
No 136
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=45.69 E-value=3.9 Score=29.03 Aligned_cols=49 Identities=18% Similarity=0.396 Sum_probs=30.7
Q ss_pred CCCcCccccccccCC-CCc-eeccCCCcchHHhHHHHHh--------cCCCCCCCcccC
Q 025679 31 CDDACSICLEEFSES-DPS-TVTSCKHEFHLQCVLEWCQ--------RSSQCPMCWQPI 79 (249)
Q Consensus 31 ~d~~C~ICle~~~~~-~~~-~~~~C~H~Fc~~Ci~~wl~--------~~~~CP~Cr~~i 79 (249)
.+..|.||...-... ..+ ..-.|...||..|+..-+. ..-.|+.|....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 477899999763211 122 2236888999999976442 123688886544
No 137
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=45.44 E-value=8 Score=32.18 Aligned_cols=34 Identities=18% Similarity=0.485 Sum_probs=25.1
Q ss_pred CCcCccccccccCC-CCceeccCCCcchHHhHHHH
Q 025679 32 DDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEW 65 (249)
Q Consensus 32 d~~C~ICle~~~~~-~~~~~~~C~H~Fc~~Ci~~w 65 (249)
+..|.+|...|..- ..-..-.||..||..|...+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 56999999988632 22445689999999997643
No 138
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=45.24 E-value=2.3 Score=28.10 Aligned_cols=36 Identities=22% Similarity=0.557 Sum_probs=24.4
Q ss_pred CcCccccccccCCC---Cceecc--CCCcchHHhHHHHHhc
Q 025679 33 DACSICLEEFSESD---PSTVTS--CKHEFHLQCVLEWCQR 68 (249)
Q Consensus 33 ~~C~ICle~~~~~~---~~~~~~--C~H~Fc~~Ci~~wl~~ 68 (249)
..||-|.-.+.... .++... |++.||+.|+..|...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 46888887775321 133334 8899999999888653
No 139
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=43.14 E-value=2.6 Score=29.70 Aligned_cols=32 Identities=25% Similarity=0.627 Sum_probs=19.5
Q ss_pred CccccccccCC---CCceeccCCCcchHHhHHHHH
Q 025679 35 CSICLEEFSES---DPSTVTSCKHEFHLQCVLEWC 66 (249)
Q Consensus 35 C~ICle~~~~~---~~~~~~~C~H~Fc~~Ci~~wl 66 (249)
||-|-..+... ..+....|++.||..|-..|-
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~ 62 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWE 62 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchh
Confidence 77665544311 123333599999998877773
No 140
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=42.48 E-value=13 Score=25.67 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=29.8
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
...|..|-+.+.. . .+..-+..||..|+ .|-.|...|...
T Consensus 25 ~~~C~~C~~~I~~--~-~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIVG--A-VVKARDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCCS--C-CEESSSCEECTTTC--------CCSSSCCCTTTS
T ss_pred CCCcccCCCEecc--c-EEEECCceECccCC--------EecCCCCCCCCC
Confidence 4689999998863 2 24456788998884 799998888654
No 141
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.94 E-value=11 Score=25.16 Aligned_cols=41 Identities=20% Similarity=0.520 Sum_probs=29.3
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
...|..|-..+..++ .+..-+..||..|+ .|-.|...|...
T Consensus 9 ~~~C~~C~~~I~~~~--~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAE--KVSSLGKDWHKFCL--------KCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTT--EEEETTEEEETTTC--------BCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCe--EEEECCeEeeCCCC--------CCCCCCCccCCC
Confidence 457999999886433 33355778888884 789998887643
No 142
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=40.20 E-value=18 Score=28.63 Aligned_cols=35 Identities=23% Similarity=0.471 Sum_probs=24.8
Q ss_pred CCCCCcCccccccccCCCCcee-c--cCCCcchHHhHHHHHh
Q 025679 29 DSCDDACSICLEEFSESDPSTV-T--SCKHEFHLQCVLEWCQ 67 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~~~~~-~--~C~H~Fc~~Ci~~wl~ 67 (249)
|..+..|.||-+- ..+.. - .|...||..||..++.
T Consensus 76 DG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 76 DGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp TSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 4457789999875 22222 2 4778999999999873
No 143
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=39.95 E-value=2 Score=29.93 Aligned_cols=16 Identities=19% Similarity=0.571 Sum_probs=13.6
Q ss_pred cCCCcchHHhHHHHHh
Q 025679 52 SCKHEFHLQCVLEWCQ 67 (249)
Q Consensus 52 ~C~H~Fc~~Ci~~wl~ 67 (249)
.|++.||+.|...|=.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 6899999999988744
No 144
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=39.62 E-value=19 Score=32.62 Aligned_cols=46 Identities=22% Similarity=0.468 Sum_probs=31.5
Q ss_pred CCCCCcCccccccccCCCCceec--cCCCcchHHhHHHHHhc----------CCCCCCCcc
Q 025679 29 DSCDDACSICLEEFSESDPSTVT--SCKHEFHLQCVLEWCQR----------SSQCPMCWQ 77 (249)
Q Consensus 29 ~~~d~~C~ICle~~~~~~~~~~~--~C~H~Fc~~Ci~~wl~~----------~~~CP~Cr~ 77 (249)
+..+..|.||-+-- +-+..- .|...||..||..++-. .-.|=+|.-
T Consensus 90 DG~~~yCr~C~~Gg---~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 90 DGYQSYCSICCSGE---TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSBCSCTTTCCCS---SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCcccceEcCCCC---eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 44577999999753 222223 68889999999998722 235888854
No 145
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=39.09 E-value=3 Score=29.02 Aligned_cols=26 Identities=27% Similarity=0.648 Sum_probs=18.1
Q ss_pred cCCCcchHHhHHHHHhc----C-CCCCCCcc
Q 025679 52 SCKHEFHLQCVLEWCQR----S-SQCPMCWQ 77 (249)
Q Consensus 52 ~C~H~Fc~~Ci~~wl~~----~-~~CP~Cr~ 77 (249)
.|...||..||..-|.. . -.||.|+.
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 57789999999865432 1 36888864
No 146
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.96 E-value=15 Score=23.97 Aligned_cols=42 Identities=24% Similarity=0.552 Sum_probs=29.2
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
...|..|-..+...+ ..+..-+..||..|+ .|-.|...|...
T Consensus 5 ~~~C~~C~~~I~~~~-~~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGS-RKLEYGGQTWHEHCF--------LCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSS-CEECSTTCCEETTTC--------BCTTTCCBTTTS
T ss_pred CCCCccCCCccccCc-cEEEECccccCcccC--------eECCCCCcCCCC
Confidence 457999999886322 234456778888884 788888877654
No 147
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.01 E-value=20 Score=23.51 Aligned_cols=42 Identities=17% Similarity=0.471 Sum_probs=28.5
Q ss_pred CCcCccccccccC--CCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSE--SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~--~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
...|..|-..+.. +.. .+..-+..||..|+ .|-.|...|...
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~~~a~~~~wH~~CF--------~C~~C~~~L~~~ 48 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTK-YISFEERQWHNDCF--------NCKKCSLSLVGR 48 (72)
T ss_dssp SCSBTTTTBCCCCSSSCS-CEECSSCEECTTTC--------BCSSSCCBCTTS
T ss_pred CCCCcCCCccccCCCCcc-eEEECCcccCcccC--------EeccCCCcCCCC
Confidence 3579999988863 112 23346778888884 788898877543
No 148
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.71 E-value=13 Score=25.43 Aligned_cols=42 Identities=24% Similarity=0.483 Sum_probs=29.1
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~~ 83 (249)
...|..|-..+...+.+ ..-+..||..|+ .|-.|...|....
T Consensus 15 ~~~C~~C~~~I~~~e~v--~a~~~~wH~~CF--------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 15 GDLCALCGEHLYVLERL--CVNGHFFHRSCF--------RCHTCEATLWPGG 56 (82)
T ss_dssp SCBCSSSCCBCCTTTBC--CBTTBCCBTTTC--------BCSSSCCBCCTTS
T ss_pred CCCCcccCCCcccceEE--EECCCeeCCCcC--------EEcCCCCCcCCCc
Confidence 45899999988533322 245678888884 7888988876543
No 149
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.69 E-value=13 Score=25.81 Aligned_cols=40 Identities=15% Similarity=0.437 Sum_probs=29.3
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
...|..|-..+. .. .+..-+..||..|+ .|-.|+..|...
T Consensus 25 ~~~C~~C~~~I~--~~-~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (90)
T 2dar_A 25 TPMCAHCNQVIR--GP-FLVALGKSWHPEEF--------NCAHCKNTMAYI 64 (90)
T ss_dssp CCBBSSSCCBCC--SC-EEEETTEEECTTTC--------BCSSSCCBCSSS
T ss_pred CCCCccCCCEec--ce-EEEECCccccccCC--------ccCCCCCCCCCC
Confidence 568999999885 22 33356788998884 889998888643
No 150
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.67 E-value=12 Score=25.34 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=28.4
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
...|..|-..+.. . .+..-+..||..|+ .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-V--FVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-S--CEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCccccCCCCccC-c--EEEECcceeCcCcC--------eeCCCCCCCC
Confidence 4689999998863 2 34456788998885 7888988764
No 151
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=37.46 E-value=9.3 Score=28.56 Aligned_cols=39 Identities=15% Similarity=0.460 Sum_probs=29.0
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
...|.-|-..+.. ...+..-+..||..|+ .|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~--~~~v~a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIAD--RFLLYAMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCS--SSEEEETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCC--cEEEEeCCcEEccccc--------CcCcCCCccc
Confidence 4589999998863 2334456778998884 8999988875
No 152
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.72 E-value=17 Score=23.69 Aligned_cols=42 Identities=24% Similarity=0.525 Sum_probs=28.6
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
...|..|-..+...+. .+..-+..||..|+ .|-.|...|...
T Consensus 5 ~~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTR-KMEYKGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSC-EEEETTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCce-EEEECcCeecccCC--------cccccCCccCCC
Confidence 3479999988863222 33345678888774 788888877644
No 153
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=35.67 E-value=14 Score=24.86 Aligned_cols=48 Identities=21% Similarity=0.455 Sum_probs=29.3
Q ss_pred CCCCCCcCccccccccCCCCc-eeccCCCcchHHhHHHHHh---cCCCCCCCcc
Q 025679 28 QDSCDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQ---RSSQCPMCWQ 77 (249)
Q Consensus 28 ~~~~d~~C~ICle~~~~~~~~-~~~~C~H~Fc~~Ci~~wl~---~~~~CP~Cr~ 77 (249)
.+.+...| ||..... +... ..-.|...||..|+.--.. ....||.|+.
T Consensus 15 ~~~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 15 YFQGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34446678 9988753 2222 2246888999999853221 2356877754
No 154
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.23 E-value=20 Score=23.21 Aligned_cols=39 Identities=23% Similarity=0.561 Sum_probs=27.1
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~ 81 (249)
...|..|-..+.. . .+..-+..||..|+ .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~--~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITT--G-GVTYREQPWHKECF--------VCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCS--S-EEESSSSEEETTTS--------BCSSSCCBCTT
T ss_pred CCCCcccCCeecc--c-eEEECccccCCCCC--------ccCCCCCcCCc
Confidence 3478888888752 2 24456778888774 78888887753
No 155
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.11 E-value=34 Score=22.86 Aligned_cols=42 Identities=24% Similarity=0.497 Sum_probs=29.7
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
...|..|-..+...+. .+..-+..||..|+ .|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQ-NVEYKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSC-EEECSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCce-EEEECccccccccC--------chhhCCCccCCC
Confidence 4579999998864333 23355778898884 788998887654
No 156
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=34.53 E-value=2.7 Score=37.06 Aligned_cols=46 Identities=15% Similarity=0.308 Sum_probs=32.5
Q ss_pred CCCCcCccccccccCCCCceec----cCC--CcchHHhHHHHHhcCCCCCCCccc
Q 025679 30 SCDDACSICLEEFSESDPSTVT----SCK--HEFHLQCVLEWCQRSSQCPMCWQP 78 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~~----~C~--H~Fc~~Ci~~wl~~~~~CP~Cr~~ 78 (249)
+....||+|-..-..+ ++. .=| +.+|..|-..|-.....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s---~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG---MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE---EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee---EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5578999998764311 111 122 568888999998888899999765
No 157
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=34.39 E-value=8.8 Score=25.67 Aligned_cols=9 Identities=22% Similarity=0.718 Sum_probs=3.9
Q ss_pred cCccccccc
Q 025679 34 ACSICLEEF 42 (249)
Q Consensus 34 ~C~ICle~~ 42 (249)
.|..|...|
T Consensus 29 ~C~~C~~~L 37 (76)
T 1iml_A 29 KCEKCGKTL 37 (76)
T ss_dssp BCTTTCCBC
T ss_pred CccccCccC
Confidence 344444444
No 158
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.93 E-value=15 Score=23.89 Aligned_cols=40 Identities=18% Similarity=0.531 Sum_probs=27.5
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
...|..|-..+.. . .+..-+..||..|+ .|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-R--VIKAMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-C--CEEETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-e--EEEECcccccccCC--------EeCCCCCcCCCC
Confidence 3578999988762 2 23345677888774 788888877654
No 159
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.48 E-value=31 Score=23.76 Aligned_cols=42 Identities=21% Similarity=0.623 Sum_probs=29.8
Q ss_pred CCCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
....|.-|-..+...+ .+..-+..||..|+ .|-.|...|...
T Consensus 14 ~~~~C~~C~~~I~~~~--~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 14 ARETCVECQKTVYPME--RLLANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SSCBCTTTCCBCCTTS--EEECSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCCcCccCCCccCCce--eEEECCCEECCCCC--------eeCCCCCCCCCC
Confidence 3568999999886333 33466778898884 788888877544
No 160
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.27 E-value=19 Score=23.86 Aligned_cols=42 Identities=26% Similarity=0.593 Sum_probs=28.9
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
...|.-|-..+...+.+ +..-+..||..|+ .|-.|...|...
T Consensus 11 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKI-VNSNGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTC-EEETTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceE-EEeCccEeccccC--------eECCCCCCCCCC
Confidence 56899999988633333 2245677888774 788898887644
No 161
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=32.63 E-value=13 Score=25.01 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=29.2
Q ss_pred CCCcCccccccccCCCCc-eeccCCCcchHHhHHHHH----hcCCCCCCCccc
Q 025679 31 CDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWC----QRSSQCPMCWQP 78 (249)
Q Consensus 31 ~d~~C~ICle~~~~~~~~-~~~~C~H~Fc~~Ci~~wl----~~~~~CP~Cr~~ 78 (249)
+...| ||.....++... ..-.|...||..|+.--. .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 35568 798875433222 224688899999975421 224578888653
No 162
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.10 E-value=22 Score=23.61 Aligned_cols=43 Identities=19% Similarity=0.471 Sum_probs=29.1
Q ss_pred CCcCccccccccC-CCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSE-SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~-~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
...|..|-..+.. +....+..-+..||..|+ .|-.|...|...
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF--------~C~~C~~~L~~~ 48 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSECF--------NCGKCSVSLVGK 48 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGGC--------BCTTTCCBCSSS
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCcccC--------ChhhCCCcCCCC
Confidence 3579999998863 011233356778998884 788998887533
No 163
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=29.55 E-value=13 Score=21.73 Aligned_cols=11 Identities=18% Similarity=0.691 Sum_probs=7.1
Q ss_pred CcCcccccccc
Q 025679 33 DACSICLEEFS 43 (249)
Q Consensus 33 ~~C~ICle~~~ 43 (249)
..||||+..|.
T Consensus 6 FiCP~C~~~l~ 16 (34)
T 3mjh_B 6 FICPQCMKSLG 16 (34)
T ss_dssp EECTTTCCEES
T ss_pred cCCcHHHHHcC
Confidence 46777776664
No 164
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=29.30 E-value=21 Score=26.35 Aligned_cols=38 Identities=21% Similarity=0.611 Sum_probs=26.0
Q ss_pred cCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCC
Q 025679 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 34 ~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
.|..|-..+...+.+ +..-+..||..|+ .|-.|.+.|.
T Consensus 10 ~C~~C~~~I~~~e~~-~~a~~~~~H~~CF--------~C~~C~~~L~ 47 (123)
T 2l3k_A 10 LCASCDKRIRAYEMT-MRVKDKVYHLECF--------KCAACQKHFS 47 (123)
T ss_dssp CCSSSSCCCCTTCCC-CCCSSCCCCTTTC--------BCTTTCCBCC
T ss_pred cccCCCCeecCCceE-EEECCcccccccC--------ccccCCCCCC
Confidence 699999887532222 2245778888884 7888888773
No 165
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.11 E-value=23 Score=23.45 Aligned_cols=37 Identities=19% Similarity=0.538 Sum_probs=26.1
Q ss_pred CcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCC
Q 025679 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
..|.-|-..+.. . .+..-+..||..|+ .|-.|...|.
T Consensus 6 ~~C~~C~~~I~~-~--~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-R--VLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-C--CBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEecC-e--eEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 478888888752 2 23356778888874 7888888775
No 166
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.03 E-value=32 Score=25.24 Aligned_cols=48 Identities=13% Similarity=0.039 Sum_probs=29.5
Q ss_pred cCccccccccC-CCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 34 ACSICLEEFSE-SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 34 ~C~ICle~~~~-~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
.|..|...|.+ +.. ....=+..||..|..+.+.....|-.|...|...
T Consensus 34 ~C~~C~~~L~~~~~~-~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTS-SYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp CCSSSCCCTTTSEEC-CEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CcCCCCCcccccCCe-EEEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 56777766641 111 2224456788888777655444788888877654
No 167
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=28.76 E-value=37 Score=22.36 Aligned_cols=37 Identities=16% Similarity=0.339 Sum_probs=18.9
Q ss_pred CCCCCcCcccccccc-CCCCceeccCCCcchHHhHHHH
Q 025679 29 DSCDDACSICLEEFS-ESDPSTVTSCKHEFHLQCVLEW 65 (249)
Q Consensus 29 ~~~d~~C~ICle~~~-~~~~~~~~~C~H~Fc~~Ci~~w 65 (249)
..+..+|.||+..-. ++---...-|.-.||..|-..|
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v 43 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRV 43 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEE
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecccCCEe
Confidence 345789999997532 2211122234445555554433
No 168
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=28.64 E-value=12 Score=25.27 Aligned_cols=41 Identities=20% Similarity=0.518 Sum_probs=27.7
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
...|..|-..+..++ .+..-+..||..|+ .|-.|...|...
T Consensus 7 ~~~C~~C~~~I~~~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAE--EVQCDGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTT--EEEETTEEEESSSE--------ECSSSCCEECSS
T ss_pred CCcCcCcCccccCce--eEEeCCcccccccC--------ccCCCCCCCCCC
Confidence 357999998885433 33346777887774 688888877544
No 169
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.62 E-value=23 Score=24.03 Aligned_cols=39 Identities=21% Similarity=0.596 Sum_probs=28.4
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
...|.-|-..+..++.+. .-+..||..|+ .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLL--ALDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEE--ETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEE--ECCcccccccC--------CcCcCCCCcC
Confidence 568999999886444333 45678888884 7889988775
No 170
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.43 E-value=23 Score=23.76 Aligned_cols=39 Identities=21% Similarity=0.572 Sum_probs=27.7
Q ss_pred CcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
..|..|-..+. +. .+..-+..||..|+ .|-.|...|...
T Consensus 16 ~~C~~C~~~I~-~~--~v~a~~~~wH~~CF--------~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIE-GE--VVSALGKTYHPDCF--------VCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCC-SC--CEEETTEEECTTTS--------SCSSSCCCCCSS
T ss_pred CcCccccCEec-cc--eEEECCceeCccCC--------ccccCCCCCCCC
Confidence 47999999876 22 23345678888874 788998887643
No 171
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=27.19 E-value=26 Score=22.39 Aligned_cols=40 Identities=18% Similarity=0.452 Sum_probs=27.9
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
...|..|-..+. + . .+..-+..||..|+ .|-.|...|...
T Consensus 5 ~~~C~~C~~~I~-~-~-~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (66)
T 1nyp_A 5 VPICGACRRPIE-G-R-VVNAMGKQWHVEHF--------VCAKCEKPFLGH 44 (66)
T ss_dssp CCEETTTTEECC-S-C-EECCTTSBEETTTC--------BCTTTCCBCSSS
T ss_pred CCCCcccCCEec-c-e-EEEECccccccCcC--------EECCCCCCCCCC
Confidence 347889988876 2 2 34456778888874 788898877543
No 172
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.81 E-value=23 Score=22.91 Aligned_cols=38 Identities=18% Similarity=0.526 Sum_probs=25.2
Q ss_pred CcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCC
Q 025679 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~ 81 (249)
..|..|-..+.. .. +..-+..||..|+ .|-.|...|..
T Consensus 6 ~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (69)
T 2cur_A 6 SGCVKCNKAITS-GG--ITYQDQPWHADCF--------VCVTCSKKLAG 43 (69)
T ss_dssp CCCSSSCCCCCT-TC--EEETTEEECTTTT--------BCTTTCCBCTT
T ss_pred CCCcccCCEeCc-ce--EEECccccccCcC--------EECCCCCCCCC
Confidence 478888887752 22 3345667887774 68888877753
No 173
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.03 E-value=27 Score=23.51 Aligned_cols=40 Identities=15% Similarity=0.424 Sum_probs=28.2
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
...|.-|-..+. +.. +..-+..||..|+ .|-.|...|...
T Consensus 15 ~~~C~~C~~~I~-~~~--v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQP--LIFKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCC--CCCSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceE--EEECcceeCCCCC--------EeCCCCCccCCC
Confidence 457999999886 222 3345777888774 788998887644
No 174
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=25.44 E-value=31 Score=22.16 Aligned_cols=42 Identities=26% Similarity=0.603 Sum_probs=28.8
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
...|..|-..+...+. .+..-+..||..|+ .|-.|...|...
T Consensus 11 ~~~C~~C~~~i~~~e~-~~~~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEK-IVNSNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCE-EEEETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCce-EEEeCcCeeCcCCC--------cccCCCCCCCCC
Confidence 5689999998863332 22345667888885 788898887544
No 175
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=25.06 E-value=17 Score=25.90 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=25.8
Q ss_pred cCCCCCCCCcCccccccccCCCCcee-ccCC---CcchHHhHHHHH--hcCCCCCC-Ccc
Q 025679 25 GGIQDSCDDACSICLEEFSESDPSTV-TSCK---HEFHLQCVLEWC--QRSSQCPM-CWQ 77 (249)
Q Consensus 25 ~~~~~~~d~~C~ICle~~~~~~~~~~-~~C~---H~Fc~~Ci~~wl--~~~~~CP~-Cr~ 77 (249)
....+++...| ||..... + .++. -.|. ..||..|+.--. .....||. |+.
T Consensus 19 ~~~~~~~~~yC-iC~~~~~-g-~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 19 EGNNNQEEVYC-FCRNVSY-G-PMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp -----CCSCCS-TTTCCCS-S-SEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCCCCCCcEE-EeCCCCC-C-CEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 33444556778 9987532 2 2221 2333 589999985110 12346888 853
No 176
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=23.78 E-value=54 Score=23.95 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=30.4
Q ss_pred CcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCC
Q 025679 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~ 81 (249)
..|..|...|..........=+..||..|..+-+.....|..|.+.|..
T Consensus 30 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp CBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred cccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 5677777777421112223456678888877654433479999888754
No 177
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.60 E-value=42 Score=22.35 Aligned_cols=38 Identities=18% Similarity=0.461 Sum_probs=26.3
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~ 80 (249)
...|..|-+.+. +. .+..-+..||..|+ .|-.|...|.
T Consensus 15 ~~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 1x6a_A 15 GEFCHGCSLLMT-GP--FMVAGEFKYHPECF--------ACMSCKVIIE 52 (81)
T ss_dssp SCBCTTTCCBCC-SC--CBCCTTCCBCTTSC--------BCTTTCCBCC
T ss_pred CCcCccCCCCcC-ce--EEEECCceeccccC--------CccCCCCccC
Confidence 347889988876 22 23345677887774 7888888875
No 178
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=23.54 E-value=4 Score=28.78 Aligned_cols=39 Identities=21% Similarity=0.623 Sum_probs=20.1
Q ss_pred CcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccC
Q 025679 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i 79 (249)
..||+|...+..... +.+|..|-..+ .....||-|.+++
T Consensus 3 ~~CP~C~~~l~~~~~-------~~~C~~C~~~~-~~~afCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERNGD-------TAHCETCAKDF-SLQALCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEECSS-------EEECTTTCCEE-EEEEECSSSCSCC
T ss_pred CCCCCCCCccccCCC-------ceECccccccC-CCcccCcchhhHH
Confidence 578888887752111 22344443221 1222577777666
No 179
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=22.75 E-value=23 Score=23.01 Aligned_cols=43 Identities=26% Similarity=0.485 Sum_probs=24.6
Q ss_pred CCCCcCccccccccCCCCcee-cc--CC-CcchHHhHHHHHh----cCCCCCCCcc
Q 025679 30 SCDDACSICLEEFSESDPSTV-TS--CK-HEFHLQCVLEWCQ----RSSQCPMCWQ 77 (249)
Q Consensus 30 ~~d~~C~ICle~~~~~~~~~~-~~--C~-H~Fc~~Ci~~wl~----~~~~CP~Cr~ 77 (249)
++...| ||..... + .+.. -. |. ..||..|+. +. ..-.||.|+.
T Consensus 8 ~e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 345667 9988632 2 1111 13 44 579999987 32 2346888754
No 180
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=22.68 E-value=52 Score=23.90 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=18.2
Q ss_pred cCCCcchHHhHH------HHHhc-----CCCCCCCccc
Q 025679 52 SCKHEFHLQCVL------EWCQR-----SSQCPMCWQP 78 (249)
Q Consensus 52 ~C~H~Fc~~Ci~------~wl~~-----~~~CP~Cr~~ 78 (249)
.|+..||..|+. .-+.. ...||.|-..
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 589999999952 12222 3679999653
No 181
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.61 E-value=35 Score=22.64 Aligned_cols=39 Identities=23% Similarity=0.609 Sum_probs=27.2
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~ 81 (249)
...|..|-..+.. . .+..-+..||..|+ .|-.|...|..
T Consensus 15 ~~~C~~C~~~I~~-~--~v~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 2cuq_A 15 APRCARCSKTLTQ-G--GVTYRDQPWHRECL--------VCTGCQTPLAG 53 (80)
T ss_dssp SCCCTTTCCCCCS-C--CEESSSSEECTTTC--------BCSSSCCBCTT
T ss_pred CCcCCCCCCEecC-c--EEEECCchhhhhhC--------CcccCCCcCCC
Confidence 3578888888753 2 33456778888774 78888888753
No 182
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.13 E-value=34 Score=22.73 Aligned_cols=39 Identities=21% Similarity=0.519 Sum_probs=26.7
Q ss_pred CcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 33 ~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
..|..|-..+.. . .+..-+..||..|+ .|-.|+..|...
T Consensus 16 ~~C~~C~~~I~~-~--~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLE-N--YLSAMDTVWHPECF--------VCGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCS-S--CEEETTEEECTTTC--------BCSSSCCBSCSS
T ss_pred CccccCCCeecc-e--eEEECCCeEecCcC--------ChhhCCCCCCCC
Confidence 478888888763 2 23345667887774 788898887643
No 183
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.05 E-value=30 Score=23.16 Aligned_cols=40 Identities=18% Similarity=0.521 Sum_probs=27.2
Q ss_pred CCcCccccccccCCCCceeccCCCcchHHhHHHHHhcCCCCCCCcccCCCC
Q 025679 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (249)
Q Consensus 32 d~~C~ICle~~~~~~~~~~~~C~H~Fc~~Ci~~wl~~~~~CP~Cr~~i~~~ 82 (249)
...|..|-..+. .. .+..-+..||..|+ .|-.|...|...
T Consensus 15 ~~~C~~C~~~I~--~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (81)
T 2dlo_A 15 LEKCATCSQPIL--DR-ILRAMGKAYHPGCF--------TCVVCHRGLDGI 54 (81)
T ss_dssp CCBCTTTCCBCC--SC-CEEETTEEECTTTC--------BCSSSCCBCTTS
T ss_pred CCccccCCCeec--ce-eEEECCccccHHhc--------CcccCCCccCCC
Confidence 457888888876 22 33345677888774 788898877543
No 184
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=20.18 E-value=36 Score=33.57 Aligned_cols=49 Identities=22% Similarity=0.489 Sum_probs=32.8
Q ss_pred CCcCccccccccCCCC-------ceeccCCCc--------------------chHHhHHHHHhc--------CCCCCCCc
Q 025679 32 DDACSICLEEFSESDP-------STVTSCKHE--------------------FHLQCVLEWCQR--------SSQCPMCW 76 (249)
Q Consensus 32 d~~C~ICle~~~~~~~-------~~~~~C~H~--------------------Fc~~Ci~~wl~~--------~~~CP~Cr 76 (249)
--+|+=|+.++.+... +..+.||.. +|..|..++-.- -..||.|-
T Consensus 111 ~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~CG 190 (761)
T 3vth_A 111 MGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDCG 190 (761)
T ss_dssp BCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTTTS
T ss_pred ccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCccC
Confidence 5689999999874221 234566643 599999998631 13599996
Q ss_pred ccCC
Q 025679 77 QPIS 80 (249)
Q Consensus 77 ~~i~ 80 (249)
-.+.
T Consensus 191 P~l~ 194 (761)
T 3vth_A 191 PSLS 194 (761)
T ss_dssp CCEE
T ss_pred CeeE
Confidence 5553
Done!