BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025680
         (249 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
           Group-1 Pollen Allergen From Maize
          Length = 245

 Score = 80.9 bits (198), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 103/247 (41%), Gaps = 35/247 (14%)

Query: 21  NGGGGWINARATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGSC 78
           N  G W+ ARAT+Y               G  N+    Y   TA  +  +F +G  CGSC
Sbjct: 14  NYNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSC 73

Query: 79  YEIKCVNDPKWCL--PGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ 136
           YE++C   P+ C   P T+ +T  N+                    HFDLS   F  +A+
Sbjct: 74  YEVRCKEKPE-CSGNPVTVYITDMNYEPIA--------------PYHFDLSGKAFGSLAK 118

Query: 137 -------YRAGVVPVAYKRVPCGRRGGIRFTINGHSYFN----LVLITNVGGAGDVHAVS 185
                     G++ V ++RV C    G +   +     N     VL+  V   GD+  + 
Sbjct: 119 PGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLME 178

Query: 186 IKGSRTG-WQPMSRNWGQNWQSNT--YLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRT 242
           I+   +  W+PM  +WG  W+ +T   L G   S  +T+  G+ V + +V PA W     
Sbjct: 179 IQDKLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWRPDAV 237

Query: 243 Y-SGAQF 248
           Y S  QF
Sbjct: 238 YTSNVQF 244


>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
 pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
          Length = 241

 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 97/238 (40%), Gaps = 30/238 (12%)

Query: 23  GGGWINARATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGSCYE 80
           G  W++A++T+Y                Y ++    +   T   +T +F +G  CGSC+E
Sbjct: 16  GDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFE 75

Query: 81  IKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQY--- 137
           IKC   P+ C    ++V  T+                     HFDLS   F  +A+    
Sbjct: 76  IKCTK-PEACSGEPVVVHITDDNEEPIAPY------------HFDLSGHAFGAMAKKGDE 122

Query: 138 ----RAGVVPVAYKRVPCGRRGGIRFTINGHSYFN----LVLITNVGGAGDVHAVSIKGS 189
                AG + + ++RV C    G + T +     N     +L+  V G GDV AV IK  
Sbjct: 123 QKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEK 182

Query: 190 -RTGWQPMSRNWGQNWQSNT--YLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 244
            +  W  +  +WG  W+ +T   L G   +   TT  G    + +V P GW    +Y 
Sbjct: 183 GKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKADTSYE 239


>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
          Length = 751

 Score = 28.5 bits (62), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 153 RRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSI--KGSRTGW 193
           R  G+R+ +  H   +LV++TN GGA + H + I  +G  + W
Sbjct: 317 REKGVRYDVQMHGTSHLVILTNEGGAVN-HKLLIAPRGQPSDW 358


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.458 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,002,190
Number of Sequences: 62578
Number of extensions: 271322
Number of successful extensions: 457
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 451
Number of HSP's gapped (non-prelim): 4
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)