Query 025680
Match_columns 249
No_of_seqs 147 out of 1046
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:23:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00050 expansin A; Provision 100.0 2.7E-70 5.9E-75 483.4 28.0 247 1-248 1-247 (247)
2 PLN00193 expansin-A; Provision 100.0 6.8E-70 1.5E-74 482.7 28.8 242 7-248 10-256 (256)
3 PLN03023 Expansin-like B1; Pro 100.0 1.3E-62 2.9E-67 434.1 25.6 213 20-249 19-247 (247)
4 COG4305 Endoglucanase C-termin 100.0 1.7E-28 3.6E-33 204.4 20.3 214 4-249 9-231 (232)
5 PLN03024 Putative EG45-like do 100.0 1.8E-27 3.8E-32 191.3 13.9 99 28-148 23-125 (125)
6 smart00837 DPBB_1 Rare lipopro 99.9 9.7E-27 2.1E-31 176.3 8.8 86 61-146 1-87 (87)
7 PLN00115 pollen allergen group 99.9 3.1E-23 6.6E-28 164.9 11.1 91 150-248 21-118 (118)
8 PF01357 Pollen_allerg_1: Poll 99.9 4.4E-22 9.6E-27 149.2 9.7 77 157-234 1-82 (82)
9 PF03330 DPBB_1: Rare lipoprot 99.8 6.2E-19 1.3E-23 130.5 6.6 73 61-146 1-78 (78)
10 PF00967 Barwin: Barwin family 99.1 1.1E-10 2.3E-15 91.6 4.3 61 70-151 55-119 (119)
11 PF07249 Cerato-platanin: Cera 98.0 4.3E-05 9.3E-10 61.1 8.8 66 60-150 44-113 (119)
12 TIGR00413 rlpA rare lipoprotei 97.8 0.00023 5E-09 61.9 11.0 96 29-154 1-96 (208)
13 COG0797 RlpA Lipoproteins [Cel 97.7 0.00024 5.1E-09 62.8 9.8 59 76-152 120-178 (233)
14 PRK10672 rare lipoprotein A; P 97.1 0.0081 1.8E-07 56.4 11.8 94 28-151 80-173 (361)
15 PF02015 Glyco_hydro_45: Glyco 88.2 0.44 9.6E-06 41.4 2.9 53 61-128 70-122 (201)
16 cd02854 Glycogen_branching_enz 73.0 10 0.00022 29.1 5.3 48 181-228 16-76 (99)
17 PF08194 DIM: DIM protein; In 66.1 6.1 0.00013 25.1 2.2 15 1-15 1-16 (36)
18 cd02110 SO_family_Moco_dimer S 59.1 20 0.00043 33.2 5.3 48 179-226 236-293 (317)
19 PF03404 Mo-co_dimer: Mo-co ox 58.0 17 0.00036 29.4 4.1 46 180-225 42-105 (131)
20 PRK10564 maltose regulon perip 57.9 33 0.00072 31.8 6.4 76 144-248 48-127 (303)
21 cd02855 Glycogen_branching_enz 36.2 1.3E+02 0.0028 22.1 5.8 34 194-227 49-85 (106)
22 PF10417 1-cysPrx_C: C-termina 34.3 22 0.00047 22.8 1.0 11 231-241 10-20 (40)
23 PRK10301 hypothetical protein; 32.0 64 0.0014 25.7 3.6 27 136-162 95-124 (124)
24 PLN00177 sulfite oxidase; Prov 31.8 1.2E+02 0.0026 29.1 6.1 27 172-198 289-316 (393)
25 cd02859 AMPKbeta_GBD_like AMP- 30.6 1.8E+02 0.004 20.8 5.6 56 170-230 4-62 (79)
26 cd02861 E_set_proteins_like E 30.5 1E+02 0.0022 22.2 4.2 45 182-227 14-60 (82)
27 cd02111 eukary_SO_Moco molybdo 29.7 1.4E+02 0.0031 28.2 6.1 26 173-198 270-296 (365)
28 cd02113 bact_SoxC_Moco bacteri 29.5 1.1E+02 0.0025 28.5 5.3 49 177-225 236-293 (326)
29 TIGR02588 conserved hypothetic 27.6 3.3E+02 0.0071 22.0 8.2 66 156-222 35-119 (122)
30 PRK13701 psiB plasmid SOS inhi 24.9 2.5E+02 0.0053 23.2 5.8 44 140-187 58-105 (144)
31 COG2372 CopC Uncharacterized p 24.9 94 0.002 25.2 3.4 27 136-162 96-125 (127)
32 PF02922 CBM_48: Carbohydrate- 24.1 1.8E+02 0.004 20.5 4.6 48 181-228 22-79 (85)
33 PF04234 CopC: CopC domain; I 23.6 71 0.0015 24.0 2.4 26 137-162 69-97 (97)
34 PF08770 SoxZ: Sulphur oxidati 22.6 1.9E+02 0.004 22.2 4.6 17 214-230 81-97 (100)
35 PF13985 YbgS: YbgS-like prote 22.2 45 0.00096 26.7 1.0 22 2-23 3-24 (122)
36 cd02114 bact_SorA_Moco sulfite 22.2 1.4E+02 0.0031 28.3 4.6 48 178-225 287-344 (367)
37 cd02860 Pullulanase_N_term Pul 21.7 3.4E+02 0.0073 20.0 5.8 33 194-226 39-73 (100)
No 1
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=2.7e-70 Score=483.36 Aligned_cols=247 Identities=77% Similarity=1.375 Sum_probs=229.3
Q ss_pred CchhhHHHHHHHHhhhccccCCCCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEeChhhcCCCCCCcceEE
Q 025680 1 MYFAGFFSLGFLALVSSVHANGGGGWINARATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYE 80 (249)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~aT~Y~~~~~~~~~~GaCgy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~e 80 (249)
|--||.-+..+|..++-++ .+..+|..++|||||++++.++++|||||+++..++++.++||+|+++|++|++||+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~-~~~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCye 79 (247)
T PLN00050 1 MECLGYTIVALLSILKIVE-GYGSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFE 79 (247)
T ss_pred CcchhhhHHHHhhhheecc-ccCCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEE
Confidence 5567777777777776655 456789999999999999888999999999988888999999999999999999999999
Q ss_pred EEEcCCCCCcCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhhhhcCCeeeEEEEEeecCCCCceeEE
Q 025680 81 IKCVNDPKWCLPGTIMVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFT 160 (249)
Q Consensus 81 V~c~~~~~~C~~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~~~i~w~~V~C~~~gni~~~ 160 (249)
|+|.+.+..|.+++|+|+|||+||++++.|++|++||++++.|||||..||.+||....|+++|+||||||+++|||+|+
T Consensus 80 V~C~~~~~~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~ 159 (247)
T PLN00050 80 IKCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFT 159 (247)
T ss_pred EEcCCCCcccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEE
Confidence 99977656799899999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred EcCCccceeEEEEeeCCCcceEEEEEEecCCceeeccCCCCceEEeCCCCCCcceEEEEEecCCcEEEEccccCCCCCCC
Q 025680 161 INGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFG 240 (249)
Q Consensus 161 v~s~~~w~av~v~n~~G~~~I~sVei~~~g~~W~~m~r~~g~~W~~~~~~~g~p~~vRvT~~~G~~v~~~~vip~~w~~G 240 (249)
|++++||++|+|.|++|+++|++|+|+++++.|++|+|+||++|+++.++.+.||+||||+.+|+++++.||||++|++|
T Consensus 160 v~g~sy~~~vlv~nv~G~gdi~~V~ikg~~~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G 239 (247)
T PLN00050 160 INGHSYFNLVLITNVGGAGDIVAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFG 239 (247)
T ss_pred EcCCceeEEEEEEEcCCCccEEEEEEecCCCCeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCC
Confidence 99988999999999999999999999998778999999999999998877767999999999999999999999999999
Q ss_pred eEEeCCCC
Q 025680 241 RTYSGAQF 248 (249)
Q Consensus 241 ~~Y~~~q~ 248 (249)
.+|++.||
T Consensus 240 ~ty~~~~f 247 (247)
T PLN00050 240 QTYTGMQF 247 (247)
T ss_pred CeEecCcC
Confidence 99999887
No 2
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=6.8e-70 Score=482.67 Aligned_cols=242 Identities=65% Similarity=1.230 Sum_probs=223.6
Q ss_pred HHHHHHHhhhccccCC-CCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEeChhhcCCCCCCcceEEEEEcC
Q 025680 7 FSLGFLALVSSVHANG-GGGWINARATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVN 85 (249)
Q Consensus 7 ~~~~~~~~~~~~~~~~-~~~~~~g~aT~Y~~~~~~~~~~GaCgy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~ 85 (249)
+||-|||.+.-+.+.+ .++|.+++||||+++++.++.+|||||+++..++++.++||+|+++|++|++||+||||+|..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~ 89 (256)
T PLN00193 10 ILLQFCCYLFINVNAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDY 89 (256)
T ss_pred HHHHHHHHHHhhccCcCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCC
Confidence 3455667666655554 469999999999999888889999999998888899999999999999999999999999952
Q ss_pred --CCCCcCCC-eEEEEEeCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhhhhcCCeeeEEEEEeecCCCCceeEEEc
Q 025680 86 --DPKWCLPG-TIMVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTIN 162 (249)
Q Consensus 86 --~~~~C~~~-sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~~~i~w~~V~C~~~gni~~~v~ 162 (249)
++..|.++ +|+|+|||+||.++++|++|++||.+++.|||||..||.+||....|+++|+||||+|+++|||+|+|+
T Consensus 90 ~~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~~G~i~f~v~ 169 (256)
T PLN00193 90 QADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTIN 169 (256)
T ss_pred CCCCccccCCCeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEeccccCCCcEEEEc
Confidence 35689877 999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred CCccceeEEEEeeCCCcceEEEEEEecCCceeeccCCCCceEEeCCCCCCcceEEEEEecCCcEEEEccccCCCCCCCeE
Q 025680 163 GHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRT 242 (249)
Q Consensus 163 s~~~w~av~v~n~~G~~~I~sVei~~~g~~W~~m~r~~g~~W~~~~~~~g~p~~vRvT~~~G~~v~~~~vip~~w~~G~~ 242 (249)
+++||++|+|.|++|++||++|+|+++++.|++|+|+||++|+++.++.+.||+||||+.+|+++++.||||++|++|.+
T Consensus 170 gn~y~~~vlv~nv~G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~viPa~W~~G~t 249 (256)
T PLN00193 170 GRDYFELVLISNVGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANWGFGQT 249 (256)
T ss_pred CCccEEEEEEEEeCCCccEEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECceeCCCCCCCCe
Confidence 99999999999999999999999999877899999999999999887776799999999999999999999999999999
Q ss_pred EeCC-CC
Q 025680 243 YSGA-QF 248 (249)
Q Consensus 243 Y~~~-q~ 248 (249)
|++. ||
T Consensus 250 y~s~vqf 256 (256)
T PLN00193 250 FSSSVQF 256 (256)
T ss_pred EecCccC
Confidence 9999 98
No 3
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=1.3e-62 Score=434.09 Aligned_cols=213 Identities=30% Similarity=0.629 Sum_probs=192.3
Q ss_pred cCCCCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEeChhhcCCCCCCcceEEEEEcCCCCCcCCCeEEEEE
Q 025680 20 ANGGGGWINARATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTA 99 (249)
Q Consensus 20 ~~~~~~~~~g~aT~Y~~~~~~~~~~GaCgy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~~sv~v~V 99 (249)
+++.++|.+++|||||++++.|+.+|||||+++..+.++.++||++ ++|++|++||+||||+|.+ +..|.+++|+|+|
T Consensus 19 ~~~~~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~-~~~C~~~~v~V~i 96 (247)
T PLN03023 19 LCKSQDFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKA-PNLCSDDGVNVVV 96 (247)
T ss_pred hhhcCCcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCC-CCccCCCCeEEEE
Confidence 4566789999999999999999999999999988878888999998 9999999999999999976 5689999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhhh-------hcCCeeeEEEEEeecCCCC-ceeEEEc--CC-ccce
Q 025680 100 TNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYKRVPCGRRG-GIRFTIN--GH-SYFN 168 (249)
Q Consensus 100 ~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~-------~~~G~~~i~w~~V~C~~~g-ni~~~v~--s~-~~w~ 168 (249)
||.||. + +.|||||.+||.+||. ...|+++|+||||||.++| ||+|+|+ ++ ++|+
T Consensus 97 Td~~~~-----------~---~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl 162 (247)
T PLN03023 97 TDYGEG-----------D---KTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYL 162 (247)
T ss_pred EeCCCC-----------C---CCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceE
Confidence 999985 3 6899999999999998 4669999999999999999 9999998 33 7899
Q ss_pred eEEEEeeCCCcceEEEEEEecC-CceeeccCCCCceEEeCCCCCCcceEEEEE--ecCCcE-EEEccccCCCCCCCeEEe
Q 025680 169 LVLITNVGGAGDVHAVSIKGSR-TGWQPMSRNWGQNWQSNTYLNGQSLSFEVT--TSDGRT-VTSYNVAPAGWSFGRTYS 244 (249)
Q Consensus 169 av~v~n~~G~~~I~sVei~~~g-~~W~~m~r~~g~~W~~~~~~~g~p~~vRvT--~~~G~~-v~~~~vip~~w~~G~~Y~ 244 (249)
+|+|.|++|+++|++|||++++ ..|++|+|+||++|+++.+|+| ||+||++ ..+|++ |+++||||++|++|.+|+
T Consensus 163 ~vlv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~G-p~slrf~v~~~~g~~~vva~nViPa~Wk~G~TY~ 241 (247)
T PLN03023 163 AIVMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKG-PITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYD 241 (247)
T ss_pred EEEEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCC-ceeEEEEEEeCCCcEEEEECceeCCCCCCCCEEe
Confidence 9999999999999999999965 6899999999999999988987 6666664 457755 899999999999999999
Q ss_pred CC-CCC
Q 025680 245 GA-QFR 249 (249)
Q Consensus 245 ~~-q~~ 249 (249)
++ ||.
T Consensus 242 s~vq~~ 247 (247)
T PLN03023 242 SNIQLD 247 (247)
T ss_pred cccccC
Confidence 99 983
No 4
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.7e-28 Score=204.38 Aligned_cols=214 Identities=21% Similarity=0.332 Sum_probs=167.1
Q ss_pred hhHHHHHHHHhhhccccCCCCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEeChhhcCCC----CCCcceE
Q 025680 4 AGFFSLGFLALVSSVHANGGGGWINARATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNG----LSCGSCY 79 (249)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~g~aT~Y~~~~~~~~~~GaCgy~~~~~~~~~~~~aA~s~~~~~~g----~~CG~C~ 79 (249)
++-.++-..|....+.+++ .+.++|.|||-+... ++||=-+. +.+-+..|.|+|+++-+-| +.-|+.+
T Consensus 9 ~g~v~~~~~~~s~q~s~aw-d~~f~G~ATyTgsGY----sGGAflLD---PI~sd~eITAlNPaqlNlGGipAAmAGaYL 80 (232)
T COG4305 9 VGMVLLTIFCFSPQASAAW-DDLFEGYATYTGSGY----SGGAFLLD---PIPSDMEITALNPAQLNLGGIPAAMAGAYL 80 (232)
T ss_pred HHHhhhhhhccCCCccccc-ccccceeEEEecccc----cCceEEec---CcCCcceeeecCHHHcccCCchhhhccceE
Confidence 3444444444444443333 344689999877543 47887543 3445677999999888744 7899999
Q ss_pred EEEEcCCCCCcCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhhhhcCCeeeEEEEEeecCCCCceeE
Q 025680 80 EIKCVNDPKWCLPGTIMVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRF 159 (249)
Q Consensus 80 eV~c~~~~~~C~~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~~~i~w~~V~C~~~gni~~ 159 (249)
+|.+ |+ ++++|.|||+.|++ ..+.||||+.||.+|++..+|+++|+||.|+-+..||+.+
T Consensus 81 rVqG---PK----G~TTVYVTDlYPeg-------------asGaLDLSpNAFakIGnm~qGrIpvqWrvv~aPvtGN~~Y 140 (232)
T COG4305 81 RVQG---PK----GKTTVYVTDLYPEG-------------ASGALDLSPNAFAKIGNMKQGRIPVQWRVVKAPVTGNFTY 140 (232)
T ss_pred EEEC---CC----CceEEEEecccccc-------------cccccccChHHHhhhcchhcCccceeEEEecccccccEEE
Confidence 9998 54 68899999999983 2588999999999999999999999999999999999999
Q ss_pred EEc--CCccceeEEEEeeCCCcceEEEEEEecCCceeeccCCCCceEEeCCCCCCcceEEEEEecCCcEEEEc-cccCCC
Q 025680 160 TIN--GHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSY-NVAPAG 236 (249)
Q Consensus 160 ~v~--s~~~w~av~v~n~~G~~~I~sVei~~~g~~W~~m~r~~g~~W~~~~~~~g~p~~vRvT~~~G~~v~~~-~vip~~ 236 (249)
++| |+.||.+|||+||. .||.++|+.+. +.|..|.+.+||+|.-.+ +...||.+|+||+.|++++.. -.+|..
T Consensus 141 RiKeGSs~WWAAIQVRnH~--yPV~KlE~~qd-g~WinlpK~dYNhFVgT~-LG~~pL~~RmTDIRG~~l~DtlP~Lpk~ 216 (232)
T COG4305 141 RIKEGSSRWWAAIQVRNHK--YPVMKLEYEQD-GKWINLPKMDYNHFVGTN-LGTGPLKVRMTDIRGKVLKDTLPKLPKS 216 (232)
T ss_pred EEecCCccceeeeeeeccc--CceEEEEEecC-CeEeeccccccceeeccc-cCCCceEEEEeecccceeeccccccccc
Confidence 999 57899999999998 89999999977 789999999999998655 333599999999999999875 356644
Q ss_pred CCCCe-EEeCC-CCC
Q 025680 237 WSFGR-TYSGA-QFR 249 (249)
Q Consensus 237 w~~G~-~Y~~~-q~~ 249 (249)
-+-.+ +-.+. ||+
T Consensus 217 asSKaY~V~G~VQFs 231 (232)
T COG4305 217 ASSKAYTVPGHVQFS 231 (232)
T ss_pred ccCCceeecceeecC
Confidence 33222 22344 775
No 5
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.95 E-value=1.8e-27 Score=191.31 Aligned_cols=99 Identities=34% Similarity=0.678 Sum_probs=85.2
Q ss_pred EEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEeChhhcCCCCCCcceEEEEEcCC----CCCcCCCeEEEEEeCCC
Q 025680 28 NARATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVND----PKWCLPGTIMVTATNFC 103 (249)
Q Consensus 28 ~g~aT~Y~~~~~~~~~~GaCgy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~----~~~C~~~sv~v~V~D~C 103 (249)
+|+||||++.+ .||| |++ .+++.++||+++++|++|+.||+||||+|.+. +..|.+++|+|+|+|+|
T Consensus 23 ~G~AT~Y~~~~-----~gAC-~~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD~C 93 (125)
T PLN03024 23 PGIATFYTSYT-----PSAC-YRG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVDHC 93 (125)
T ss_pred ceEEEEeCCCC-----Cccc-cCC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccccccCCeEEEEEEcCC
Confidence 69999998754 4899 443 24678999999999999999999999999653 24688889999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCceecCHHHHHHhhhhcCCeeeEEEEE
Q 025680 104 PPNNALPNNAGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 148 (249)
Q Consensus 104 p~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~~~i~w~~ 148 (249)
|+. |. .|||||++||++||+++.|+++|+|.+
T Consensus 94 P~~----------C~---~~~DLS~~AF~~iA~~~aG~v~V~y~~ 125 (125)
T PLN03024 94 PSG----------CA---STLDLSREAFAQIANPVAGIINIDYIP 125 (125)
T ss_pred CCC----------CC---CceEcCHHHHHHhcCccCCEEEEEEeC
Confidence 951 74 699999999999999999999999974
No 6
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.94 E-value=9.7e-27 Score=176.29 Aligned_cols=86 Identities=77% Similarity=1.477 Sum_probs=80.1
Q ss_pred EEEeChhhcCCCCCCcceEEEEEcCCCCCcCCC-eEEEEEeCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhhhhcC
Q 025680 61 TAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG-TIMVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQHIAQYRA 139 (249)
Q Consensus 61 ~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~~-sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~ 139 (249)
+||+|+++|++|++||+||||+|.+++..|.++ +|+|+|||+||++++.++++++||.++++|||||++||.+||....
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~~~ 80 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQYKA 80 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhhcC
Confidence 479999999999999999999997656689875 9999999999999888888999999889999999999999999999
Q ss_pred CeeeEEE
Q 025680 140 GVVPVAY 146 (249)
Q Consensus 140 G~~~i~w 146 (249)
|+|+|+|
T Consensus 81 Gvi~v~y 87 (87)
T smart00837 81 GIVPVKY 87 (87)
T ss_pred CEEeeEC
Confidence 9999987
No 7
>PLN00115 pollen allergen group 3; Provisional
Probab=99.90 E-value=3.1e-23 Score=164.89 Aligned_cols=91 Identities=20% Similarity=0.370 Sum_probs=80.3
Q ss_pred ecCCCCceeEEEc--CCccceeEEEEeeCCCcceEEEEEEecC-Ccee-eccCCCCceEEeCC--CCCCcceEEEEEecC
Q 025680 150 PCGRRGGIRFTIN--GHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQ-PMSRNWGQNWQSNT--YLNGQSLSFEVTTSD 223 (249)
Q Consensus 150 ~C~~~gni~~~v~--s~~~w~av~v~n~~G~~~I~sVei~~~g-~~W~-~m~r~~g~~W~~~~--~~~g~p~~vRvT~~~ 223 (249)
.|.. +|+|+|+ ++++||++++ | ++|.+|||++++ ..|+ +|+|+||+.|+++. +|+| ||+||+|+.+
T Consensus 21 ~~g~--~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~G-PlS~R~t~~~ 92 (118)
T PLN00115 21 SCAT--EVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKG-PFSVRFLVKG 92 (118)
T ss_pred hcCC--ceEEEECCCCCcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCC-ceEEEEEEeC
Confidence 3643 7999998 4699997765 3 469999999986 5899 99999999999754 6887 9999999999
Q ss_pred CcEEEEccccCCCCCCCeEEeCC-CC
Q 025680 224 GRTVTSYNVAPAGWSFGRTYSGA-QF 248 (249)
Q Consensus 224 G~~v~~~~vip~~w~~G~~Y~~~-q~ 248 (249)
|++++++||||++|+||.+|+++ ||
T Consensus 93 G~~~va~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 93 GGYRVVDDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred CCEEEECceECCCCCCCCEEeccccC
Confidence 99999999999999999999999 97
No 8
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.87 E-value=4.4e-22 Score=149.24 Aligned_cols=77 Identities=48% Similarity=0.908 Sum_probs=64.1
Q ss_pred eeEEEc--CCccceeEEEEeeCCCcceEEEEEEecC-CceeeccCCCCceEEeC-CCCCCcceEEEEEecC-CcEEEEcc
Q 025680 157 IRFTIN--GHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPMSRNWGQNWQSN-TYLNGQSLSFEVTTSD-GRTVTSYN 231 (249)
Q Consensus 157 i~~~v~--s~~~w~av~v~n~~G~~~I~sVei~~~g-~~W~~m~r~~g~~W~~~-~~~~g~p~~vRvT~~~-G~~v~~~~ 231 (249)
|+|+|+ |++||++|+|.|++|.++|++|||++++ .+|++|+|+||++|+++ .++++ ||+||||+.+ |++++++|
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~-pls~Rvts~~~G~~vv~~n 79 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGG-PLSFRVTSGDSGQTVVADN 79 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--S-SEEEEEEETTTSEEEEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCC-CEEEEEEEcCCCeEEEEec
Confidence 689998 4799999999999999999999999887 56999999999999998 66664 9999999977 99999999
Q ss_pred ccC
Q 025680 232 VAP 234 (249)
Q Consensus 232 vip 234 (249)
|||
T Consensus 80 ViP 82 (82)
T PF01357_consen 80 VIP 82 (82)
T ss_dssp EE-
T ss_pred ccC
Confidence 998
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.77 E-value=6.2e-19 Score=130.50 Aligned_cols=73 Identities=38% Similarity=0.821 Sum_probs=61.4
Q ss_pred EEEeChhhcCCCCCCcceEEEEEcCC-CCC--cCC--CeEEEEEeCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhh
Q 025680 61 TAALSTALFNNGLSCGSCYEIKCVND-PKW--CLP--GTIMVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQHIA 135 (249)
Q Consensus 61 ~aA~s~~~~~~g~~CG~C~eV~c~~~-~~~--C~~--~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia 135 (249)
+||++..+|++|..||+||+++|... ... |.. ++|+|+|+|+||+ |. .+|||||+.||++|+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~-----------~~--~~~lDLS~~aF~~la 67 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG-----------CP--PNHLDLSPAAFKALA 67 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT-----------SS--SSEEEEEHHHHHHTB
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC-----------Cc--CCEEEeCHHHHHHhC
Confidence 48999999999999999999999321 222 877 8999999999998 85 699999999999999
Q ss_pred hhcCCeeeEEE
Q 025680 136 QYRAGVVPVAY 146 (249)
Q Consensus 136 ~~~~G~~~i~w 146 (249)
.++.|+++|+|
T Consensus 68 ~~~~G~i~V~w 78 (78)
T PF03330_consen 68 DPDAGVIPVEW 78 (78)
T ss_dssp STTCSSEEEEE
T ss_pred CCCceEEEEEC
Confidence 99999999999
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.08 E-value=1.1e-10 Score=91.62 Aligned_cols=61 Identities=28% Similarity=0.539 Sum_probs=44.9
Q ss_pred CCCCCCcceEEEEEcCCCCCcCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhh----hhcCCeeeEE
Q 025680 70 NNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQHIA----QYRAGVVPVA 145 (249)
Q Consensus 70 ~~g~~CG~C~eV~c~~~~~~C~~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia----~~~~G~~~i~ 145 (249)
.+-..||+|++||.... +.+++|+|||+|+. ++|||.+.+|++|- ....|.+.|.
T Consensus 55 ~gq~~CGkClrVTNt~t-----ga~~~~RIVDqCsn----------------GGLDld~~vF~~iDtdG~G~~~Ghl~V~ 113 (119)
T PF00967_consen 55 MGQDSCGKCLRVTNTAT-----GAQVTVRIVDQCSN----------------GGLDLDPTVFNQIDTDGQGYAQGHLIVD 113 (119)
T ss_dssp -SGGGTT-EEEEE-TTT-------EEEEEEEEE-SS----------------SSEES-SSSHHHH-SSSHHHHHTEEEEE
T ss_pred cCcccccceEEEEecCC-----CcEEEEEEEEcCCC----------------CCcccChhHHhhhccCCcccccceEEEE
Confidence 34578999999998764 24999999999886 57999999999995 3477999999
Q ss_pred EEEeec
Q 025680 146 YKRVPC 151 (249)
Q Consensus 146 w~~V~C 151 (249)
|++|+|
T Consensus 114 y~fV~C 119 (119)
T PF00967_consen 114 YEFVDC 119 (119)
T ss_dssp EEEE--
T ss_pred EEEEcC
Confidence 999999
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.00 E-value=4.3e-05 Score=61.12 Aligned_cols=66 Identities=21% Similarity=0.425 Sum_probs=47.2
Q ss_pred eEEEeCh-hhcCCCCCCcceEEEEEcCCCCCcCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhhh--
Q 025680 60 NTAALST-ALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQHIAQ-- 136 (249)
Q Consensus 60 ~~aA~s~-~~~~~g~~CG~C~eV~c~~~~~~C~~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~-- 136 (249)
.|.+... +-|+ +..||.|+|++-.+ +++.|..+|.=+ ..|+|+.+||+.|..
T Consensus 44 ~IGg~~~V~gWn-S~~CGtC~~lty~g-------~si~vlaID~a~-----------------~gfnis~~A~n~LT~g~ 98 (119)
T PF07249_consen 44 YIGGAPAVAGWN-SPNCGTCWKLTYNG-------RSIYVLAIDHAG-----------------GGFNISLDAMNDLTNGQ 98 (119)
T ss_dssp SEEEETT--STT--TTTT-EEEEEETT-------EEEEEEEEEE-S-----------------SSEEE-HHHHHHHHTS-
T ss_pred eeccccccccCC-CCCCCCeEEEEECC-------eEEEEEEEecCC-----------------CcccchHHHHHHhcCCc
Confidence 4666665 4464 57899999999832 499999999732 459999999999986
Q ss_pred -hcCCeeeEEEEEee
Q 025680 137 -YRAGVVPVAYKRVP 150 (249)
Q Consensus 137 -~~~G~~~i~w~~V~ 150 (249)
...|+|+++|++|+
T Consensus 99 a~~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 99 AVELGRVDATYTQVD 113 (119)
T ss_dssp CCCC-EEE-EEEEE-
T ss_pred ccceeEEEEEEEEcC
Confidence 36799999999996
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=97.83 E-value=0.00023 Score=61.85 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=69.3
Q ss_pred EEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEeChhhcCCCCCCcceEEEEEcCCCCCcCCCeEEEEEeCCCCCCCC
Q 025680 29 ARATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCPPNNA 108 (249)
Q Consensus 29 g~aT~Y~~~~~~~~~~GaCgy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~~sv~v~V~D~Cp~~~~ 108 (249)
|.|+|||....+ ...|.|-.. . ...+.||-. -...|..++|+...+. .+|+|+|.|++|-.
T Consensus 1 G~ASwYg~~f~G--~~TAnGe~y--~--~~~~tAAHk------tLPlgT~V~VtNl~ng-----rsviVrVnDRGPf~-- 61 (208)
T TIGR00413 1 GLASWYGPKFHG--RKTANGEVY--N--MKALTAAHK------TLPFNTYVKVTNLHNN-----RSVIVRINDRGPFS-- 61 (208)
T ss_pred CEEeEeCCCCCC--CcCCCCeec--C--CCccccccc------cCCCCCEEEEEECCCC-----CEEEEEEeCCCCCC--
Confidence 679999864321 124444221 1 123444433 2377889999997652 49999999999962
Q ss_pred CCCCCCCCCCCCCCceecCHHHHHHhhhhcCCeeeEEEEEeecCCC
Q 025680 109 LPNNAGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRR 154 (249)
Q Consensus 109 ~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~~~i~w~~V~C~~~ 154 (249)
+..-+|||..|+.+|+-...|+.+|+.+.+.....
T Consensus 62 -----------~gRiIDLS~aAA~~Lg~~~~G~a~V~vevl~~~~~ 96 (208)
T TIGR00413 62 -----------DDRIIDLSHAAAREIGLISRGVGQVRIEVLHVAKN 96 (208)
T ss_pred -----------CCCEEECCHHHHHHcCCCcCceEEEEEEEEecCCC
Confidence 24679999999999999999999999999987754
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.74 E-value=0.00024 Score=62.77 Aligned_cols=59 Identities=15% Similarity=0.239 Sum_probs=51.0
Q ss_pred cceEEEEEcCCCCCcCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhhhhcCCeeeEEEEEeecC
Q 025680 76 GSCYEIKCVNDPKWCLPGTIMVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCG 152 (249)
Q Consensus 76 G~C~eV~c~~~~~~C~~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~~~i~w~~V~C~ 152 (249)
|.-.+|+..++. .+|+|+|.|++|- . ..-.+|||..|+++|+-...|+.+|+.+++.+.
T Consensus 120 ~t~v~VtNl~Ng-----rsvvVRINDRGPf------------~-~gRiIDlS~aAA~~l~~~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 120 PTYVRVTNLDNG-----RSVVVRINDRGPF------------V-SGRIIDLSKAAADKLGMIRSGVAKVRIEVLGVA 178 (233)
T ss_pred CCEEEEEEccCC-----cEEEEEEeCCCCC------------C-CCcEeEcCHHHHHHhCCccCceEEEEEEEeccc
Confidence 456899998762 5999999999995 3 357899999999999999999999999999976
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=97.07 E-value=0.0081 Score=56.41 Aligned_cols=94 Identities=21% Similarity=0.175 Sum_probs=62.9
Q ss_pred EEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEeChhhcCCCCCCcceEEEEEcCCCCCcCCCeEEEEEeCCCCCCC
Q 025680 28 NARATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCPPNN 107 (249)
Q Consensus 28 ~g~aT~Y~~~~~~~~~~GaCgy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~~sv~v~V~D~Cp~~~ 107 (249)
.|.|+|||....+ ...|.|-- ++ ...+.||-.. ..-|..++|+...+. ++|+|+|.|++|-.
T Consensus 80 ~G~ASwYg~~f~G--~~TA~Ge~--~~--~~~~tAAH~t------LPlps~vrVtNl~ng-----rsvvVrVnDRGP~~- 141 (361)
T PRK10672 80 AGLAAIYDAEAGS--NLTASGER--FD--PNALTAAHPT------LPIPSYVRVTNLANG-----RMIVVRINDRGPYG- 141 (361)
T ss_pred EEEEEEeCCccCC--CcCcCcee--ec--CCcCeeeccC------CCCCCEEEEEECCCC-----cEEEEEEeCCCCCC-
Confidence 6889999864321 11222211 11 1134444432 356788999998752 59999999999962
Q ss_pred CCCCCCCCCCCCCCCceecCHHHHHHhhhhcCCeeeEEEEEeec
Q 025680 108 ALPNNAGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPC 151 (249)
Q Consensus 108 ~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~~~i~w~~V~C 151 (249)
+..-+|||..|+.+|.-...+.++|+.-.|.=
T Consensus 142 ------------~gRiiDLS~aAA~~Lg~~~~~~V~ve~i~v~~ 173 (361)
T PRK10672 142 ------------PGRVIDLSRAAADRLNTSNNTKVRIDPIIVAP 173 (361)
T ss_pred ------------CCCeeEcCHHHHHHhCCCCCceEEEEEEeeCC
Confidence 24679999999999988777778888777743
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=88.16 E-value=0.44 Score=41.43 Aligned_cols=53 Identities=26% Similarity=0.317 Sum_probs=31.1
Q ss_pred EEEeChhhcCCCCCCcceEEEEEcCCCCCcCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCceecCH
Q 025680 61 TAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQ 128 (249)
Q Consensus 61 ~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~ 128 (249)
+||++-.-......|++|||++=++.+ -..++.+|++++.=-+ -..+||||..
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~--l~GKkmiVQ~tNtG~d-------------lg~n~FDl~i 122 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSGP--LKGKKMIVQVTNTGGD-------------LGSNQFDLAI 122 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SST--TTT-EEEEEEEEE-TT-------------TTTTEEEEE-
T ss_pred eeeeeecCCCCCCcccceEEEEEcCCC--cCCCEeEEEecccCCC-------------CCCCeEEEEe
Confidence 566652222233689999999998643 3345999999986322 1368999975
No 16
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=73.04 E-value=10 Score=29.07 Aligned_cols=48 Identities=17% Similarity=0.397 Sum_probs=34.5
Q ss_pred eEEEEEEecCCcee----eccCCCCceEEeCCC---------CCCcceEEEEEecCCcEEE
Q 025680 181 VHAVSIKGSRTGWQ----PMSRNWGQNWQSNTY---------LNGQSLSFEVTTSDGRTVT 228 (249)
Q Consensus 181 I~sVei~~~g~~W~----~m~r~~g~~W~~~~~---------~~g~p~~vRvT~~~G~~v~ 228 (249)
-++|+|.++-..|. +|+|...-+|++.-+ ..+..+.++|+..+|+++.
T Consensus 16 A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~ 76 (99)
T cd02854 16 AEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWID 76 (99)
T ss_pred CCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEE
Confidence 45777776545675 488877779986422 2456899999998888754
No 17
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=66.07 E-value=6.1 Score=25.07 Aligned_cols=15 Identities=40% Similarity=0.507 Sum_probs=10.7
Q ss_pred CchhhH-HHHHHHHhh
Q 025680 1 MYFAGF-FSLGFLALV 15 (249)
Q Consensus 1 ~~~~~~-~~~~~~~~~ 15 (249)
|+++++ |+|.+|+++
T Consensus 1 Mk~l~~a~~l~lLal~ 16 (36)
T PF08194_consen 1 MKCLSLAFALLLLALA 16 (36)
T ss_pred CceeHHHHHHHHHHHH
Confidence 899988 666666633
No 18
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=59.14 E-value=20 Score=33.23 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=31.3
Q ss_pred cceEEEEEEecCC-ceeeccCCCCc-------eEEeCCCC-CC-cceEEEEEecCCcE
Q 025680 179 GDVHAVSIKGSRT-GWQPMSRNWGQ-------NWQSNTYL-NG-QSLSFEVTTSDGRT 226 (249)
Q Consensus 179 ~~I~sVei~~~g~-~W~~m~r~~g~-------~W~~~~~~-~g-~p~~vRvT~~~G~~ 226 (249)
..|++|||..+++ +|++..-.... .|++.-.+ .| --+.+|.||..|++
T Consensus 236 ~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~~ 293 (317)
T cd02110 236 RGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDSTGNV 293 (317)
T ss_pred CCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCCCCc
Confidence 5799999999875 89987653221 55554222 22 25677778888743
No 19
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=57.96 E-value=17 Score=29.37 Aligned_cols=46 Identities=15% Similarity=0.315 Sum_probs=26.6
Q ss_pred ceEEEEEEecC-CceeeccCCC--C-----------ceEEeCC--CC-CC-cceEEEEEecCCc
Q 025680 180 DVHAVSIKGSR-TGWQPMSRNW--G-----------QNWQSNT--YL-NG-QSLSFEVTTSDGR 225 (249)
Q Consensus 180 ~I~sVei~~~g-~~W~~m~r~~--g-----------~~W~~~~--~~-~g-~p~~vRvT~~~G~ 225 (249)
+|.+|||..++ .+|++..... . -.|++.- +. .| --+.+|-||.+|.
T Consensus 42 ~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~D~~G~ 105 (131)
T PF03404_consen 42 GIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRATDESGN 105 (131)
T ss_dssp -EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEEETTS-
T ss_pred ceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEeecccc
Confidence 89999999886 5698765432 1 1466532 12 22 2566666787774
No 20
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=57.86 E-value=33 Score=31.81 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=47.6
Q ss_pred EEEEEeecCCCCceeEEEc-CCccceeEEEEeeCCCcceEEEEEEecCCceeeccCCCCceEEeCCCCCCcceEEEEEe-
Q 025680 144 VAYKRVPCGRRGGIRFTIN-GHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTT- 221 (249)
Q Consensus 144 i~w~~V~C~~~gni~~~v~-s~~~w~av~v~n~~G~~~I~sVei~~~g~~W~~m~r~~g~~W~~~~~~~g~p~~vRvT~- 221 (249)
+.|..|+ .+..+.|.+. +++.+ ...+|.++|.+.+|-.. - +.++|+|+|
T Consensus 48 l~wq~l~--~~~~~~~~L~~~sq~~-----~f~~~~s~vAAf~lPan--------------------~--G~l~i~LsS~ 98 (303)
T PRK10564 48 LTWQPVD--QSKTQTTQLATGGQQL-----NVAGISGPVAAYSLPAN--------------------I--GELTLTLSSL 98 (303)
T ss_pred CCceEcc--CCCceEEEeCCCCcce-----ecCCCcccEEEEEcccc--------------------c--ccEEEEEEEE
Confidence 5677665 3456778887 56655 22333345554444322 2 279999998
Q ss_pred cCCcEEEEccc--cCCCCCCCeEEeCCCC
Q 025680 222 SDGRTVTSYNV--APAGWSFGRTYSGAQF 248 (249)
Q Consensus 222 ~~G~~v~~~~v--ip~~w~~G~~Y~~~q~ 248 (249)
...+.|-+.+| +=++|++-++|.+.+|
T Consensus 99 v~~~~VfaPnVlvLD~~~~~~~~y~s~~F 127 (303)
T PRK10564 99 VNDKSVFAPNVLVLDQNMRPAAFYPSSYF 127 (303)
T ss_pred ecCCcEEeceEEEEcCCCCEEEEecccce
Confidence 44457777764 4488888888888755
No 21
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=36.23 E-value=1.3e+02 Score=22.14 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=20.6
Q ss_pred eeccCCC-CceEEeC--CCCCCcceEEEEEecCCcEE
Q 025680 194 QPMSRNW-GQNWQSN--TYLNGQSLSFEVTTSDGRTV 227 (249)
Q Consensus 194 ~~m~r~~-g~~W~~~--~~~~g~p~~vRvT~~~G~~v 227 (249)
.+|.|.. ..+|.+. ....+..+.+|++..+|.+.
T Consensus 49 ~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~ 85 (106)
T cd02855 49 HPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLP 85 (106)
T ss_pred eecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE
Confidence 3677755 6678753 22323468999987555543
No 22
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=34.30 E-value=22 Score=22.78 Aligned_cols=11 Identities=36% Similarity=0.779 Sum_probs=9.4
Q ss_pred cccCCCCCCCe
Q 025680 231 NVAPAGWSFGR 241 (249)
Q Consensus 231 ~vip~~w~~G~ 241 (249)
.+.|+||++|.
T Consensus 10 v~tPanW~pGd 20 (40)
T PF10417_consen 10 VATPANWKPGD 20 (40)
T ss_dssp SBBCTTTCTTS
T ss_pred cccCcCCCCCC
Confidence 48899999985
No 23
>PRK10301 hypothetical protein; Provisional
Probab=31.97 E-value=64 Score=25.70 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=22.2
Q ss_pred hhcCCeeeEEEEEeecC---CCCceeEEEc
Q 025680 136 QYRAGVVPVAYKRVPCG---RRGGIRFTIN 162 (249)
Q Consensus 136 ~~~~G~~~i~w~~V~C~---~~gni~~~v~ 162 (249)
.+..|.+.|+||-|+=+ ..|.++|.|+
T Consensus 95 ~L~~G~YtV~Wrvvs~DGH~~~G~~~F~V~ 124 (124)
T PRK10301 95 SLKPGTYTVDWHVVSVDGHKTKGHYTFSVK 124 (124)
T ss_pred CCCCccEEEEEEEEecCCCccCCeEEEEEC
Confidence 35789999999999987 3568888875
No 24
>PLN00177 sulfite oxidase; Provisional
Probab=31.82 E-value=1.2e+02 Score=29.07 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=19.2
Q ss_pred EEeeCCCcceEEEEEEecCC-ceeeccC
Q 025680 172 ITNVGGAGDVHAVSIKGSRT-GWQPMSR 198 (249)
Q Consensus 172 v~n~~G~~~I~sVei~~~g~-~W~~m~r 198 (249)
+...+|...|.+|||..+++ +|+....
T Consensus 289 ~Awsggg~~I~rVEVS~DgG~tW~~A~l 316 (393)
T PLN00177 289 YALSGGGRGIERVDISVDGGKTWVEASR 316 (393)
T ss_pred EEECCCCccEEEEEEEcCCCCCceeeee
Confidence 34444434799999998874 7997653
No 25
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=30.60 E-value=1.8e+02 Score=20.85 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=35.2
Q ss_pred EEEEeeCCCcceEEEEEEecCCcee---eccCCCCceEEeCCCCCCcceEEEEEecCCcEEEEc
Q 025680 170 VLITNVGGAGDVHAVSIKGSRTGWQ---PMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSY 230 (249)
Q Consensus 170 v~v~n~~G~~~I~sVei~~~g~~W~---~m~r~~g~~W~~~~~~~g~p~~vRvT~~~G~~v~~~ 230 (249)
|.|+..+ +-++|+|.++=..|. +|.|..+. |...-.+..+.+.+|+-- +|+++...
T Consensus 4 v~f~~~~---~a~~V~v~G~F~~W~~~~pm~~~~~~-~~~~~~L~~g~y~YkF~V-dg~w~~d~ 62 (79)
T cd02859 4 TTFVWPG---GGKEVYVTGSFDNWKKKIPLEKSGKG-FSATLRLPPGKYQYKFIV-DGEWRHSP 62 (79)
T ss_pred EEEEEcC---CCcEEEEEEEcCCCCccccceECCCC-cEEEEEcCCCCEEEEEEE-CCEEEeCC
Confidence 4455554 457899998755676 48887655 776544432367777754 67777654
No 26
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=30.46 E-value=1e+02 Score=22.17 Aligned_cols=45 Identities=27% Similarity=0.462 Sum_probs=27.9
Q ss_pred EEEEEEecCCce--eeccCCCCceEEeCCCCCCcceEEEEEecCCcEE
Q 025680 182 HAVSIKGSRTGW--QPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTV 227 (249)
Q Consensus 182 ~sVei~~~g~~W--~~m~r~~g~~W~~~~~~~g~p~~vRvT~~~G~~v 227 (249)
++|+|.++=..| .+|+|.....|++.-++..+.+..|+. ++|++.
T Consensus 14 ~~V~v~G~fn~W~~~~m~~~~~G~w~~~~~l~~G~y~Ykf~-vdg~~~ 60 (82)
T cd02861 14 DSVYLAGSFNNWNAIPMEREGDGLWVVTVELRPGRYEYKFV-VDGEWV 60 (82)
T ss_pred CEEEEEeECCCCCcccCEECCCCcEEEEEeCCCCcEEEEEE-ECCEEe
Confidence 688888764567 468887656887654433224555554 356554
No 27
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=29.74 E-value=1.4e+02 Score=28.22 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=19.1
Q ss_pred EeeCCCcceEEEEEEecCC-ceeeccC
Q 025680 173 TNVGGAGDVHAVSIKGSRT-GWQPMSR 198 (249)
Q Consensus 173 ~n~~G~~~I~sVei~~~g~-~W~~m~r 198 (249)
.+.+|...|.+|||..+++ +|+...-
T Consensus 270 A~sgg~~~I~rVEVS~DgG~tW~~A~l 296 (365)
T cd02111 270 AWSGGGRKIVRVDVSLDGGRTWKVAEL 296 (365)
T ss_pred EECCCCCcEEEEEEECCCCCcceeCCc
Confidence 4444445799999998874 7997654
No 28
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=29.54 E-value=1.1e+02 Score=28.49 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=29.1
Q ss_pred CCcceEEEEEEecCC-ceeeccCCC--C-c---eEEeC-CCCCC-cceEEEEEecCCc
Q 025680 177 GAGDVHAVSIKGSRT-GWQPMSRNW--G-Q---NWQSN-TYLNG-QSLSFEVTTSDGR 225 (249)
Q Consensus 177 G~~~I~sVei~~~g~-~W~~m~r~~--g-~---~W~~~-~~~~g-~p~~vRvT~~~G~ 225 (249)
|.+.|.+|||..+++ +|+...... + . .|++. .+..+ --+.+|-||..|+
T Consensus 236 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D~~G~ 293 (326)
T cd02113 236 GRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATDETGY 293 (326)
T ss_pred CCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEcCCCC
Confidence 345799999998875 799765431 1 1 33332 12222 2466666887774
No 29
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=27.63 E-value=3.3e+02 Score=21.96 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=40.1
Q ss_pred ceeEEEc------CCccceeEEEEeeCCCcceEEEEEEec---C--------CceeeccCCCC--ceEEeCCCCCCcceE
Q 025680 156 GIRFTIN------GHSYFNLVLITNVGGAGDVHAVSIKGS---R--------TGWQPMSRNWG--QNWQSNTYLNGQSLS 216 (249)
Q Consensus 156 ni~~~v~------s~~~w~av~v~n~~G~~~I~sVei~~~---g--------~~W~~m~r~~g--~~W~~~~~~~g~p~~ 216 (249)
.+.+.++ +.+||.-+.|.|.+| .-.++|+|.+. + .+.--+.+..- ..+.....|.+.-|.
T Consensus 35 ~l~v~~~~~~r~~~gqyyVpF~V~N~gg-~TAasV~V~geL~~~~~v~E~~e~tiDfl~g~e~~~G~~IF~~dP~~g~L~ 113 (122)
T TIGR02588 35 VLEVAPAEVERMQTGQYYVPFAIHNLGG-TTAAAVNIRGELRQAGAVVENAEVTIDYLASGSKENGTLIFRSDPRNGQLR 113 (122)
T ss_pred eEEEeehheeEEeCCEEEEEEEEEeCCC-cEEEEEEEEEEEccCCceeEEeeEEEEEcCCCCeEeEEEEEccCcccCeEE
Confidence 5666664 246999999999987 67999999954 1 11222333221 233334444334788
Q ss_pred EEEEec
Q 025680 217 FEVTTS 222 (249)
Q Consensus 217 vRvT~~ 222 (249)
||+.+.
T Consensus 114 irv~gY 119 (122)
T TIGR02588 114 LRVAGY 119 (122)
T ss_pred EEEEec
Confidence 888763
No 30
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=24.93 E-value=2.5e+02 Score=23.21 Aligned_cols=44 Identities=27% Similarity=0.545 Sum_probs=26.6
Q ss_pred CeeeEEEEEeecCCCCceeEEEc--C--CccceeEEEEeeCCCcceEEEEEE
Q 025680 140 GVVPVAYKRVPCGRRGGIRFTIN--G--HSYFNLVLITNVGGAGDVHAVSIK 187 (249)
Q Consensus 140 G~~~i~w~~V~C~~~gni~~~v~--s--~~~w~av~v~n~~G~~~I~sVei~ 187 (249)
|-++|+-|+-| -.++..+.+= | +|+|+.|++ +.+| .++.-|...
T Consensus 58 GffPVq~Rfsp--~~~~~~l~vCSpG~~sP~W~~Vl~-~~gG-~~~a~v~~~ 105 (144)
T PRK13701 58 GFFPVQVRFTP--AHERFHLALCSPGDVSPVWVLVLV-NAGG-EPFAVVQVQ 105 (144)
T ss_pred CeeeEEEEecC--CCCCeEEEEeCCCCCCcceEEEEE-cCCC-cEEEEEEec
Confidence 55666666665 2235666554 3 899999887 5555 455544443
No 31
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=24.85 E-value=94 Score=25.22 Aligned_cols=27 Identities=30% Similarity=0.621 Sum_probs=23.2
Q ss_pred hhcCCeeeEEEEEeecCC---CCceeEEEc
Q 025680 136 QYRAGVVPVAYKRVPCGR---RGGIRFTIN 162 (249)
Q Consensus 136 ~~~~G~~~i~w~~V~C~~---~gni~~~v~ 162 (249)
++..|.+-++||.|+=+- .|.+.|.|+
T Consensus 96 ~L~aG~Y~v~WrvvS~DGH~v~G~~sFsV~ 125 (127)
T COG2372 96 PLKAGVYTVDWRVVSSDGHVVKGSISFSVG 125 (127)
T ss_pred cCCCCcEEEEEEEEecCCcEeccEEEEEec
Confidence 568899999999999983 568999886
No 32
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=24.08 E-value=1.8e+02 Score=20.48 Aligned_cols=48 Identities=23% Similarity=0.457 Sum_probs=29.6
Q ss_pred eEEEEEEecCCc-e----eecc-CCCCceEEeCC--CCC-C-cceEEEEEecCCcEEE
Q 025680 181 VHAVSIKGSRTG-W----QPMS-RNWGQNWQSNT--YLN-G-QSLSFEVTTSDGRTVT 228 (249)
Q Consensus 181 I~sVei~~~g~~-W----~~m~-r~~g~~W~~~~--~~~-g-~p~~vRvT~~~G~~v~ 228 (249)
-++|+|...... | .+|+ +....+|++.- .+. | .-+.+||+..+|++..
T Consensus 22 A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~g~~~~ 79 (85)
T PF02922_consen 22 AKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDDGETPE 79 (85)
T ss_dssp ESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETTTEEEE
T ss_pred CCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCCCcEEE
Confidence 445666544322 3 4677 56778997643 343 3 3899999998875544
No 33
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=23.62 E-value=71 Score=23.96 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=18.9
Q ss_pred hcCCeeeEEEEEeecCC---CCceeEEEc
Q 025680 137 YRAGVVPVAYKRVPCGR---RGGIRFTIN 162 (249)
Q Consensus 137 ~~~G~~~i~w~~V~C~~---~gni~~~v~ 162 (249)
+..|.+.|+||-|+=+- .|.+.|.||
T Consensus 69 l~~G~YtV~wrvvs~DGH~~~G~~~F~V~ 97 (97)
T PF04234_consen 69 LPPGTYTVSWRVVSADGHPVSGSFSFTVK 97 (97)
T ss_dssp --SEEEEEEEEEEETTSCEEEEEEEEEE-
T ss_pred CCCceEEEEEEEEecCCCCcCCEEEEEEC
Confidence 67899999999999663 457788775
No 34
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=22.57 E-value=1.9e+02 Score=22.19 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=12.9
Q ss_pred ceEEEEEecCCcEEEEc
Q 025680 214 SLSFEVTTSDGRTVTSY 230 (249)
Q Consensus 214 p~~vRvT~~~G~~v~~~ 230 (249)
+++|+.+|++|+.....
T Consensus 81 ~l~v~~~Dn~G~~~~~~ 97 (100)
T PF08770_consen 81 TLTVTWTDNKGNSFSAE 97 (100)
T ss_dssp EEEEEEEETTS-EEEEE
T ss_pred EEEEEEEECCCCEEEEE
Confidence 88999999998876654
No 35
>PF13985 YbgS: YbgS-like protein
Probab=22.24 E-value=45 Score=26.69 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=18.7
Q ss_pred chhhHHHHHHHHhhhccccCCC
Q 025680 2 YFAGFFSLGFLALVSSVHANGG 23 (249)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (249)
+|+.+||+..|.|++.|+.+.+
T Consensus 3 Klatl~LTAtl~LaSGAAlAAd 24 (122)
T PF13985_consen 3 KLATLFLTATLTLASGAALAAD 24 (122)
T ss_pred hHHHHHHHHHHHhhhhHHHHhh
Confidence 6889999999999999887754
No 36
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=22.18 E-value=1.4e+02 Score=28.27 Aligned_cols=48 Identities=19% Similarity=0.481 Sum_probs=30.1
Q ss_pred CcceEEEEEEecCC-ceeeccCC--CCc----eEEeCC-CC-CC-cceEEEEEecCCc
Q 025680 178 AGDVHAVSIKGSRT-GWQPMSRN--WGQ----NWQSNT-YL-NG-QSLSFEVTTSDGR 225 (249)
Q Consensus 178 ~~~I~sVei~~~g~-~W~~m~r~--~g~----~W~~~~-~~-~g-~p~~vRvT~~~G~ 225 (249)
...|.+|||..+++ +|++..-. .+. .|++.- +. .| --+.+|-||..|+
T Consensus 287 ~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G~ 344 (367)
T cd02114 287 GSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATNNDGQ 344 (367)
T ss_pred CCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEcCCCC
Confidence 36799999998874 79976532 232 466542 22 23 2566666888774
No 37
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=21.69 E-value=3.4e+02 Score=20.04 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=21.9
Q ss_pred eeccCCCCceEEeC--CCCCCcceEEEEEecCCcE
Q 025680 194 QPMSRNWGQNWQSN--TYLNGQSLSFEVTTSDGRT 226 (249)
Q Consensus 194 ~~m~r~~g~~W~~~--~~~~g~p~~vRvT~~~G~~ 226 (249)
.+|.|..+.+|.+. ..+.+.-+.+||....++.
T Consensus 39 ~~m~~~~~gvw~~~v~~~~~g~~Y~y~i~~~~~~~ 73 (100)
T cd02860 39 VQMKRGENGVWSVTLDGDLEGYYYLYEVKVYKGET 73 (100)
T ss_pred EeeecCCCCEEEEEeCCccCCcEEEEEEEEeceEE
Confidence 36777778888754 3344557888888764443
Done!