BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025684
(249 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DEY1|SPF30_XENTR Survival of motor neuron-related-splicing factor 30 OS=Xenopus
tropicalis GN=smndc1 PE=2 SV=1
Length = 238
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 105/243 (43%), Gaps = 61/243 (25%)
Query: 2 QVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQ 61
+VI LT++LL++ SET A ++ + SGS S VG K
Sbjct: 41 EVIELTKDLLSS------QPSETADDAC---------DDMSASGSQS-----WKVGEKCM 80
Query: 62 AVYSEDGEWY-DATIEAITPNGY-YVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKL 119
AV+S+DG+WY E NG +T+ +GN E N+RPV E K E
Sbjct: 81 AVWSDDGQWYEAEIEEIDEENGTAAITFAGYGNAEVTSLLNLRPVE---EGRKAKE---- 133
Query: 120 AIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKRK--KIHAFKSKMRFEQLEVTQN 177
S +LP +++ AA+R+ K A K R ++LE +
Sbjct: 134 --------------DSGNLPM-------SKKEMIAAQREYKKKKALKKAQRIKELEQERE 172
Query: 178 KRQNAWQQFQT-TKGKTKKVGFFSGRKRESIFKSPDDPYGKVGVTGSG---KGLTDFQKR 233
++ WQQF K KK G+ + SIF SP+ GKVGV G K +T +Q
Sbjct: 173 DQKVKWQQFNNKAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDT 227
Query: 234 EKH 236
K+
Sbjct: 228 SKY 230
>sp|Q7ZV80|SPF30_DANRE Survival of motor neuron-related-splicing factor 30 OS=Danio rerio
GN=smndc1 PE=2 SV=1
Length = 237
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 105/243 (43%), Gaps = 62/243 (25%)
Query: 2 QVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQ 61
+VI LT++LL + Q A + T +S + +P+ VG
Sbjct: 41 EVIELTKDLLTS--QPAEGTTSTKSSETVAPS------------------HSWRVGDHCM 80
Query: 62 AVYSEDGEWYDATIEAI-TPNGYY-VTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKL 119
A +S+DG+ Y+A IE I NG +T+ +GN A V P+++L
Sbjct: 81 ATWSQDGQVYEAEIEEIDNENGTAAITFAGYGN------AEVMPLHML------------ 122
Query: 120 AIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSK--MRFEQLEVTQN 177
+K+E+ D ++ P ++++A +R+ K R ++LE +
Sbjct: 123 ---KKVEEGRIRD--------EIDGKPKSKKELQAEQREYKKKKAQKKVQRMKELEQERE 171
Query: 178 KRQNAWQQFQT-TKGKTKKVGFFSGRKRESIFKSPDDPYGKVGVTGSG---KGLTDFQKR 233
+++ WQQF K KK G+ + SIF SP+ GKVGV G K +T +
Sbjct: 172 DQKSKWQQFNNKAYSKNKK-----GQVKRSIFASPESVNGKVGVGTCGIADKPMTQYNDT 226
Query: 234 EKH 236
K+
Sbjct: 227 SKY 229
>sp|O75940|SPF30_HUMAN Survival of motor neuron-related-splicing factor 30 OS=Homo sapiens
GN=SMNDC1 PE=1 SV=1
Length = 238
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 100/241 (41%), Gaps = 57/241 (23%)
Query: 2 QVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQ 61
+VI LT++LL+T Q + +++ + + AS P VG K
Sbjct: 41 EVIELTKDLLST--QPSETLASSDSFASTQPT------------------HSWKVGDKCM 80
Query: 62 AVYSEDGEWY-DATIEAITPNGY-YVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKL 119
AV+SEDG+ Y E NG +T+ +GN E N++PV E K E
Sbjct: 81 AVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVE---EGRKAKE---- 133
Query: 120 AIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKR 179
D +K + K I + + KK A K R ++LE + +
Sbjct: 134 ------------DSGNKPMSKKEMI-------AQQREYKKKKALKKAQRIKELEQEREDQ 174
Query: 180 QNAWQQFQT-TKGKTKKVGFFSGRKRESIFKSPDDPYGKVGVTGSG---KGLTDFQKREK 235
+ WQQF K KK G+ + SIF SP+ GKVGV G K +T +Q K
Sbjct: 175 KVKWQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSK 229
Query: 236 H 236
+
Sbjct: 230 Y 230
>sp|Q4QQU6|SPF30_RAT Survival of motor neuron-related-splicing factor 30 OS=Rattus
norvegicus GN=Smndc1 PE=2 SV=1
Length = 238
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 100/241 (41%), Gaps = 57/241 (23%)
Query: 2 QVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQ 61
+VI LT++LL+T Q + +++ + + AS P VG K
Sbjct: 41 EVIELTKDLLST--QPSETLTSSDSFASTQPT------------------HSWKVGDKCM 80
Query: 62 AVYSEDGEWY-DATIEAITPNGY-YVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKL 119
AV+SEDG+ Y E NG +T+ +GN E N++PV E K E
Sbjct: 81 AVWSEDGQCYEAEIEEIDEENGTAAITFAVYGNAEVTPLLNLKPVE---EGRKAKE---- 133
Query: 120 AIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKR 179
D +K + K I + + KK A K R ++LE + +
Sbjct: 134 ------------DSGNKPMSKKEMI-------AQQREYKKKKALKKAQRIKELEQEREDQ 174
Query: 180 QNAWQQFQT-TKGKTKKVGFFSGRKRESIFKSPDDPYGKVGVTGSG---KGLTDFQKREK 235
+ WQQF K KK G+ + SIF SP+ GKVGV G K +T +Q K
Sbjct: 175 KVKWQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSK 229
Query: 236 H 236
+
Sbjct: 230 Y 230
>sp|Q8BGT7|SPF30_MOUSE Survival of motor neuron-related-splicing factor 30 OS=Mus musculus
GN=Smndc1 PE=2 SV=1
Length = 238
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 100/241 (41%), Gaps = 57/241 (23%)
Query: 2 QVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQ 61
+VI LT++LL+T Q + +++ + + AS P VG K
Sbjct: 41 EVIELTKDLLST--QPSETLASSDSFASTQPT------------------HSWKVGDKCM 80
Query: 62 AVYSEDGEWY-DATIEAITPNGY-YVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKL 119
AV+SEDG+ Y E NG +T+ +GN E N++PV E K E
Sbjct: 81 AVWSEDGQCYEAEIEEIDEENGTAAITFAVYGNAEVTPLLNLKPVE---EGRKAKE---- 133
Query: 120 AIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKR 179
D +K + K I + + KK A K R ++LE + +
Sbjct: 134 ------------DSGNKPMSKKEMI-------AQQREYKKKKALKKAQRIKELEQEREDQ 174
Query: 180 QNAWQQFQT-TKGKTKKVGFFSGRKRESIFKSPDDPYGKVGVTGSG---KGLTDFQKREK 235
+ WQQF K KK G+ + SIF SP+ GKVGV G K +T +Q K
Sbjct: 175 KVKWQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSK 229
Query: 236 H 236
+
Sbjct: 230 Y 230
>sp|Q5R591|SPF30_PONAB Survival of motor neuron-related-splicing factor 30 OS=Pongo abelii
GN=SMNDC1 PE=2 SV=1
Length = 238
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 100/241 (41%), Gaps = 57/241 (23%)
Query: 2 QVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQ 61
+VI LT++LL+T Q + +++ + + AS P VG K
Sbjct: 41 EVIELTKDLLST--QPSETLASSDSFASTQPT------------------HSWKVGDKCM 80
Query: 62 AVYSEDGEWY-DATIEAITPNGY-YVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKL 119
A++SEDG+ Y E NG +T+ +GN E N++PV E K E
Sbjct: 81 AIWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVE---EGRKAKE---- 133
Query: 120 AIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKR 179
D +K + K I + + KK A K R ++LE + +
Sbjct: 134 ------------DSGNKPMSKKEMI-------AQQREYKKKKALKKAQRIKELEQEREDQ 174
Query: 180 QNAWQQFQT-TKGKTKKVGFFSGRKRESIFKSPDDPYGKVGVTGSG---KGLTDFQKREK 235
+ WQQF K KK G+ + SIF SP+ GKVGV G K +T +Q K
Sbjct: 175 KVKWQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSK 229
Query: 236 H 236
+
Sbjct: 230 Y 230
>sp|Q3T045|SPF30_BOVIN Survival of motor neuron-related-splicing factor 30 OS=Bos taurus
GN=SMNDC1 PE=2 SV=1
Length = 238
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 99/241 (41%), Gaps = 57/241 (23%)
Query: 2 QVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQ 61
+VI LT++LL+T Q + +++ + AS P VG K
Sbjct: 41 EVIELTKDLLST--QPSETLASSDNFASTQPT------------------HSWKVGDKCM 80
Query: 62 AVYSEDGEWY-DATIEAITPNGY-YVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKL 119
A++SEDG+ Y E NG +T+ +GN E N++PV E K E
Sbjct: 81 AIWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVE---EGRKAKE---- 133
Query: 120 AIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKR 179
D +K + K I + + KK A K R ++LE + +
Sbjct: 134 ------------DSGNKPMSKKEMI-------AQQREYKKKKALKKAQRIKELEQEREDQ 174
Query: 180 QNAWQQFQT-TKGKTKKVGFFSGRKRESIFKSPDDPYGKVGVTGSG---KGLTDFQKREK 235
+ WQQF K KK G+ + SIF SP+ GKVGV G K +T +Q K
Sbjct: 175 KVKWQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSK 229
Query: 236 H 236
+
Sbjct: 230 Y 230
>sp|P97801|SMN_MOUSE Survival motor neuron protein OS=Mus musculus GN=Smn1 PE=1 SV=1
Length = 288
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 9/111 (8%)
Query: 37 SKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAIT--PNGYYVTYDSWGNKE 94
+K+NK++ + + ++ VG K AV+SEDG Y ATI +I V Y +GN+E
Sbjct: 72 AKKNKSQKKNATTPLKQWKVGDKCSAVWSEDGCIYPATITSIDFKRETCVVVYTGYGNRE 131
Query: 95 EVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQ--SKSLPAKLH 143
E + + +LL +VA +T+ + Q + D + S+SL +K H
Sbjct: 132 EQNLS-----DLLSPTCEVANSTEQNTQENESQVSTDDSEHSSRSLRSKAH 177
>sp|Q5RE18|SMN_PONAB Survival motor neuron protein OS=Pongo abelii GN=SMN1 PE=2 SV=1
Length = 294
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 21 VSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAIT- 79
+ ET + +P +K+NK++ + + + ++ VG K A++SEDG Y ATI +I
Sbjct: 59 ICETSGKSKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDF 118
Query: 80 -PNGYYVTYDSWGNKEE 95
V Y +GN+EE
Sbjct: 119 KRETCVVVYTGYGNREE 135
>sp|Q16637|SMN_HUMAN Survival motor neuron protein OS=Homo sapiens GN=SMN1 PE=1 SV=1
Length = 294
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 21 VSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAIT- 79
+ ET +P +K+NK++ + + + ++ VG K A++SEDG Y ATI +I
Sbjct: 59 ICETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDF 118
Query: 80 -PNGYYVTYDSWGNKEE 95
V Y +GN+EE
Sbjct: 119 KRETCVVVYTGYGNREE 135
>sp|A9CPT4|TDRD1_ORYLA Tudor domain-containing protein 1 OS=Oryzias latipes GN=tdrd1 PE=2
SV=1
Length = 1133
Score = 40.0 bits (92), Expect = 0.013, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 35 LQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-TPNGYYVTYDSWGNK 93
LQ K + SG + + A GT A +SED +WY A + A T V Y +GN
Sbjct: 417 LQLKLREHCSGVETQQDFRPAPGTVCCAQFSEDKQWYRAQVLAYSTEKSVCVGYIDFGNS 476
Query: 94 EEVDPANVRPVN 105
EEVD ++RP++
Sbjct: 477 EEVDLNHLRPIS 488
>sp|Q58EK5|TDRD1_DANRE Tudor domain-containing protein 1 OS=Danio rerio GN=tdrd1 PE=2 SV=2
Length = 1175
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 55 AVGTKVQAVYSEDGEWYDATIEAITP-NGYYVTYDSWGNKEEVDPANVRPVN--LLVEAE 111
A GT +++SED +WY A + A + + V Y +GN EEV+ +RP++ LL A
Sbjct: 455 APGTVCCSLFSEDNQWYRAKVLAYSSEDRVCVGYIDFGNSEEVELNRLRPISKELLALAT 514
Query: 112 KVAEATKLAIK 122
+ + IK
Sbjct: 515 QAIPCSLAGIK 525
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 50 NQEKLAVGTKVQAVYSEDGEWYDATIEAITPNGYYVTYDSWGNKEEVDPANVRPVN 105
NQ G A +S D WY A + +T +V Y +GN E V +++ P+
Sbjct: 922 NQCHPLPGASCCAQFSGDKNWYRAVVLEVTTKHAHVIYSDYGNMETVPLSSILPIT 977
>sp|Q6NRP6|TDRD3_XENLA Tudor domain-containing protein 3 OS=Xenopus laevis GN=tdrd3 PE=2
SV=1
Length = 650
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 41 KTESGSISDNQEKLAV--------GTKVQAVYSEDGEWYDATIEAITPNGY--YVTYDSW 90
K +SGSI ++ AV G + A+Y ED ++Y A +EA+ +G V + +
Sbjct: 534 KKKSGSIKPDKPLEAVYSGFSWRSGDECLALYWEDNKYYRAEVEALHSSGTTAVVKFSDY 593
Query: 91 GNKEEVDPANVRPV 104
GN EEV N+RP+
Sbjct: 594 GNYEEVLLENIRPI 607
>sp|O02771|SMN_CANFA Survival motor neuron protein OS=Canis familiaris GN=SMN1 PE=2 SV=1
Length = 287
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 21 VSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAIT- 79
+SE ++P +K+NK++ + + ++ VG K AV+SEDG Y ATI +I
Sbjct: 54 ISEASDKPKSTPKRKPAKKNKSQKKNATTALKQWKVGDKCSAVWSEDGCIYPATIASIDF 113
Query: 80 -PNGYYVTYDSWGNKEEVDPANVRPVNLLVEAEKVA 114
V Y +GN+EE NV +LL A +VA
Sbjct: 114 KRETCVVVYTGYGNREE---QNVS--DLLSPACEVA 144
>sp|Q5ZMS6|TDRD3_CHICK Tudor domain-containing protein 3 OS=Gallus gallus GN=TDRD3 PE=2
SV=1
Length = 741
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 57 GTKVQAVYSEDGEWYDATIEAITPNGY--YVTYDSWGNKEEVDPANVRPVN 105
G + A+Y ED ++Y A +EA+ +G V + +GN EEV +N+RP++
Sbjct: 648 GDECFALYWEDNKFYRAEVEALHSSGMTAVVKFSDYGNYEEVLLSNIRPIH 698
>sp|Q6P1U3|TDRD3_XENTR Tudor domain-containing protein 3 OS=Xenopus tropicalis GN=tdrd3
PE=2 SV=2
Length = 710
Score = 38.9 bits (89), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 57 GTKVQAVYSEDGEWYDATIEAITPNGY--YVTYDSWGNKEEVDPANVRPV 104
G + A+Y ED ++Y A +EA+ +G V + +GN EEV N+RP+
Sbjct: 621 GDECLALYWEDNKYYRAEVEALHSSGTTAVVKFSDYGNYEEVLLENIRPI 670
>sp|Q6NYG6|TDRD3_DANRE Tudor domain-containing protein 3 OS=Danio rerio GN=tdrd3 PE=2 SV=1
Length = 733
Score = 38.5 bits (88), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 56 VGTKVQAVYSEDGEWYDATIEAITPNGY--YVTYDSWGNKEEVDPANVRPVNL 106
G + A+Y ED ++Y A I+A+ P+G V + +GN EEV +++P+++
Sbjct: 642 AGDQCLALYWEDNKFYRARIDAVHPSGSTAVVVFSDYGNCEEVLLDSIKPLHM 694
>sp|Q2HJG4|TDRD3_BOVIN Tudor domain-containing protein 3 OS=Bos taurus GN=TDRD3 PE=2 SV=1
Length = 722
Score = 38.5 bits (88), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 57 GTKVQAVYSEDGEWYDATIEAITPNGY--YVTYDSWGNKEEVDPANVRPV 104
G + A+Y ED ++Y A +EA+ +G V + +GN EEV +N+RP+
Sbjct: 630 GDECLALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIRPI 679
>sp|Q4R4F8|SMN_MACFA Survival motor neuron protein OS=Macaca fascicularis GN=SMN1 PE=2
SV=1
Length = 294
Score = 38.1 bits (87), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 21 VSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAIT- 79
+ ET +P +K+NK++ + + ++ VG K A++SEDG Y ATI ++
Sbjct: 59 ICETSGKPKTTPKRKPAKKNKSQKKNTAAPLKQWKVGDKCSAIWSEDGCIYPATIASVDF 118
Query: 80 -PNGYYVTYDSWGNKEE 95
V Y +GN+EE
Sbjct: 119 KRETCVVVYTGYGNREE 135
>sp|Q9BXT4|TDRD1_HUMAN Tudor domain-containing protein 1 OS=Homo sapiens GN=TDRD1 PE=2
SV=2
Length = 1180
Score = 38.1 bits (87), Expect = 0.066, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 50 NQEKLAVGTKVQAVYSEDGEWYDATIEAITPNGYY-VTYDSWGNKEEVDPANVRPVN 105
N K +G A ++ DG WY A ++ I PNG+ V + +GN EEV +R ++
Sbjct: 759 NGFKAEIGQPCCAFFAGDGSWYRALVKEILPNGHVKVHFVDYGNIEEVTADELRMIS 815
>sp|Q8HYB8|SMN_FELCA Survival of motor neuron protein OS=Felis catus GN=SMN1 PE=2 SV=1
Length = 290
Score = 37.7 bits (86), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 21 VSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAIT- 79
+SE +P +K+NK++ + + ++ VG K A++SEDG Y ATI +I
Sbjct: 56 ISEASDKPKGTPKRKPAKKNKSQKKNTTAALKQWKVGDKCSAIWSEDGCVYPATIASIDF 115
Query: 80 -PNGYYVTYDSWGNKEE 95
V Y +GN+EE
Sbjct: 116 KRETCVVVYTGYGNREE 132
>sp|P25823|TUD_DROME Maternal protein tudor OS=Drosophila melanogaster GN=tud PE=1 SV=2
Length = 2515
Score = 37.4 bits (85), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 56 VGTKVQAVYSEDGEWYDATIEAITPNGYYVTYDSWGNKEEVDPANVRPVNL-LVEAEKVA 114
+GT A +SEDG Y A + A+ Y V Y +GN E + +++ + L+E + A
Sbjct: 458 LGTACVARFSEDGHLYRAMVCAVYAQRYRVVYVDYGNSELLSASDLFQIPPELLEIKPFA 517
Query: 115 EATKLAIKRKIEQAAASD---FQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQ 171
LA ++IE S F+ ++ + PE V + + ++ + M E
Sbjct: 518 FRFALAGTKEIEPIDDSMKRIFKKSAIYRNFELTVQAPESVGSMQTCHLNQNGTNM-LEL 576
Query: 172 LEVTQNKRQN 181
L +N RQ+
Sbjct: 577 LRQLKNSRQS 586
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 49 DNQEKLAVGTKVQAVYSEDGEWYDATIEAITPNG--YYVTYDSWGNKEEV 96
D+ +K VG ++ AV S DG WY A I N + V Y +GN EE+
Sbjct: 1351 DSLKKFDVG-QICAVRSSDGNWYRARISGKDSNAACFEVFYIDYGNTEEI 1399
>sp|Q66HC1|TDRD3_RAT Tudor domain-containing protein 3 OS=Rattus norvegicus GN=Tdrd3
PE=2 SV=1
Length = 651
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 57 GTKVQAVYSEDGEWYDATIEAITPNGY--YVTYDSWGNKEEVDPANVRPV 104
G + A+Y ED ++Y A +EA+ +G V + +GN EEV +N++PV
Sbjct: 559 GDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPV 608
>sp|Q91W18|TDRD3_MOUSE Tudor domain-containing protein 3 OS=Mus musculus GN=Tdrd3 PE=1
SV=4
Length = 743
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 57 GTKVQAVYSEDGEWYDATIEAITPNGY--YVTYDSWGNKEEVDPANVRPV 104
G + A+Y ED ++Y A +EA+ +G V + +GN EEV +N++PV
Sbjct: 651 GDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPV 700
>sp|Q9H7E2|TDRD3_HUMAN Tudor domain-containing protein 3 OS=Homo sapiens GN=TDRD3 PE=1
SV=1
Length = 651
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 57 GTKVQAVYSEDGEWYDATIEAITPNGY--YVTYDSWGNKEEVDPANVRPV 104
G + A+Y ED ++Y A +EA+ +G V + +GN EEV +N++P+
Sbjct: 559 GDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI 608
>sp|O35876|SMN_RAT Survival motor neuron protein OS=Rattus norvegicus GN=Smn1 PE=2
SV=1
Length = 289
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 56 VGTKVQAVYSEDGEWYDATIEAIT--PNGYYVTYDSWGNKEEVDPANVRPVNLLVEAEKV 113
G K AV+SEDG Y ATI ++ V Y +GNKEE + + +LL +V
Sbjct: 92 AGDKCSAVWSEDGCVYPATITSVDLKRETCVVVYTGYGNKEEQNLS-----DLLSPTCEV 146
Query: 114 AEATKLAIKRKIEQAAASDFQ--SKSLPAKLH 143
A T+ + Q + D + S+SL +K H
Sbjct: 147 ANNTEQNTQENESQVSTDDSEHSSRSLRSKAH 178
>sp|Q99MV1|TDRD1_MOUSE Tudor domain-containing protein 1 OS=Mus musculus GN=Tdrd1 PE=1
SV=2
Length = 1172
Score = 34.3 bits (77), Expect = 0.82, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 50 NQEKLAVGTKVQAVYSEDGEWYDATIEAITPNG-YYVTYDSWGNKEEV 96
N K +G A +S DG WY A ++ I P+G V + +GN EEV
Sbjct: 753 NGFKAEIGRPCCAFFSGDGNWYRALVKEILPSGNVKVHFVDYGNVEEV 800
>sp|O18870|SMN_BOVIN Survival motor neuron protein OS=Bos taurus GN=SMN1 PE=2 SV=2
Length = 287
Score = 34.3 bits (77), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 36 QSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAIT--PNGYYVTYDSWGNK 93
+S +NK++ + + ++ VG A++SEDG Y ATI +I V Y +GN+
Sbjct: 69 KSAKNKSQRKNTTSPSKQWKVGDNCCAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNR 128
Query: 94 EE 95
EE
Sbjct: 129 EE 130
>sp|Q9UFH2|DYH17_HUMAN Dynein heavy chain 17, axonemal OS=Homo sapiens GN=DNAH17 PE=1 SV=2
Length = 4485
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 14 AKQNAISVSETGTSASASPNLLQSKENKTES-----GSISDNQEKLAV----GTKVQAVY 64
AKQN +S+ SA+P L + K+NK E+ G I++ ++ A G K+QA+
Sbjct: 785 AKQNIEGISQAMKDWSANP-LFERKDNKKEALLDLDGRIANLNKRYAAVRDAGVKIQAMV 843
Query: 65 SEDGEWYDATIEAITPNGYYVTYD 88
+E+ E + A ++ Y + D
Sbjct: 844 AENAELFRADTLSLPWKDYVIYID 867
>sp|P23787|TERA_XENLA Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp
PE=1 SV=3
Length = 805
Score = 32.7 bits (73), Expect = 2.3, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 111 EKVAEATKLAIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFE 170
E A KLAI+ IE + ++ P+ + + DDP V +R F+ MRF
Sbjct: 689 EICQRACKLAIRESIENEIRRERDRQTNPSAMEVEEDDP--VPEIRRDH---FEEAMRFA 743
Query: 171 QLEVTQNKRQNAWQQFQTTKGKTKKVGFF 199
+ V+ N + ++ F T +++ G F
Sbjct: 744 RRSVSDNDIRK-YEMFAQTLQQSRGFGSF 771
>sp|O94519|SPF30_SCHPO Splicing factor spf30 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=spf30 PE=1 SV=1
Length = 311
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 180 QNAWQQFQTTKGKTKKVGFFSGRKRESIFKSPDDPYGKVGVTGSGKGLTDFQKREKHLH 238
QN+W+QF KT +VG SIFKS +D G+ G + REKH++
Sbjct: 246 QNSWKQFAARGVKTGRVGKRKKIGESSIFKSTEDFPGRTNPKNFG-NVARSGHREKHIY 303
>sp|A9WR74|FMT_RENSM Methionyl-tRNA formyltransferase OS=Renibacterium salmoninarum
(strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589
/ NCIMB 2235) GN=fmt PE=3 SV=1
Length = 307
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 4 IALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAV 63
+ LT+ L A A A ++ +TG S +P L E G I + LAV +++ V
Sbjct: 173 VLLTQTLSAVAAGTATAIEQTG-PVSLAPKL------TIEDGRIDFSVPALAVSRRIRGV 225
Query: 64 YSEDGEW 70
E G W
Sbjct: 226 TEEPGAW 232
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.125 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,223,936
Number of Sequences: 539616
Number of extensions: 3841324
Number of successful extensions: 9832
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 9771
Number of HSP's gapped (non-prelim): 98
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)