BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025685
(249 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99590|SCAFB_HUMAN Protein SCAF11 OS=Homo sapiens GN=SCAF11 PE=1 SV=2
Length = 1463
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGSI 105
C ICL+ + +E + C H +C TCIL+WA + +CP + PF+ + +L+G +
Sbjct: 41 CPICLNCLLEKEVGFPESCNHVFCMTCILKWAETLA--SCPIDRKPFQAVFKFSALEGYV 98
>sp|P29836|ICP0_BHV1K E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.2 (strain
K22) GN=BICP0 PE=3 SV=1
Length = 676
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDG 103
G C ICLD AL C HA+C CI RW PTCP CK P + L +H
Sbjct: 11 GSCCICLDAITGAARALP--CLHAFCLACIRRWLEG--RPTCPLCKAPVQSL-IHS---- 61
Query: 104 SISDYMFEE 112
SD FEE
Sbjct: 62 VASDECFEE 70
>sp|P29128|ICP0_BHV1J E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.1 (strain
Jura) GN=BICP0 PE=3 SV=1
Length = 676
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDG 103
G C ICLD AL C HA+C CI RW PTCP CK P + L +H
Sbjct: 11 GSCCICLDAITGAARALP--CLHAFCLACIRRWLEG--RPTCPLCKAPVQSL-IHS---- 61
Query: 104 SISDYMFEE 112
SD FEE
Sbjct: 62 VASDECFEE 70
>sp|P84445|ICP0_EHV1V E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
V592) GN=ICP0 PE=3 SV=1
Length = 532
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93
C ICL+ AL C HA+C CI RW +NPTCP CK P E
Sbjct: 8 CPICLEDPSNYSMAL--PCLHAFCYVCITRWIR--QNPTCPLCKVPVE 51
>sp|P28990|ICP0_EHV1B E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
Ab4p) GN=63 PE=1 SV=1
Length = 532
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93
C ICL+ AL C HA+C CI RW +NPTCP CK P E
Sbjct: 8 CPICLEDPSNYSMAL--PCLHAFCYVCITRWIR--QNPTCPLCKVPVE 51
>sp|Q9V8P9|TOPRS_DROME E3 ubiquitin-protein ligase Topors OS=Drosophila melanogaster
GN=Topors PE=1 SV=1
Length = 1038
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 11 EELVKGLDNL-SISDQGEMQSKAD-NREMGFGNHGGVCAICLDKTVLQETALVKGCEHAY 68
E + G DN +I + G S A+ N + + CAICL + + C H +
Sbjct: 65 EPVSAGPDNANAIGEPGTSASAAEENGTVERNSPPPNCAICLSR--CRRKCFTDSCMHQF 122
Query: 69 CATCILRWASYVRNPTCPQCKHPFE-FLHVHRSLDG------SISDYMFEESVCL---LL 118
C C+ W+ P CP CK PF +H R+LD + + E+ L ++
Sbjct: 123 CFKCLCEWSKI--KPECPLCKQPFRTIIHNVRTLDDYDRYPVQTTSPVPTENPSLRYHIV 180
Query: 119 RATWFKPLIVEDHVVVQ 135
R + PL+ V+V
Sbjct: 181 RRPRYTPLVQNQAVIVN 197
>sp|Q09268|YQDA_CAEEL Uncharacterized RING finger protein C32D5.10 OS=Caenorhabditis
elegans GN=C32D5.10 PE=4 SV=2
Length = 610
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLH 96
C++C ++ + +T + C H +C CI+ W + P CP CK P F+
Sbjct: 41 CSVCKNEII--DTTSLSDCCHEFCYDCIVGWLTKGSGPFCPMCKTPVSFIQ 89
>sp|Q8TDB6|DTX3L_HUMAN E3 ubiquitin-protein ligase DTX3L OS=Homo sapiens GN=DTX3L PE=1
SV=1
Length = 740
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCK 89
G+C IC+D T+ + L K C+H +CA CI + SY P CP C+
Sbjct: 559 GICVICMD-TISNKKVLPK-CKHEFCAPCINKAMSY--KPICPTCQ 600
>sp|P08393|ICP0_HHV11 E3 ubiquitin-protein ligase ICP0 OS=Human herpesvirus 1 (strain 17)
GN=ICP0 PE=1 SV=1
Length = 775
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 32 ADNREMGFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHP 91
A RE G + G VCA+C D+ C H +C C+ W +RN TCP C
Sbjct: 102 APPREDGGSDEGDVCAVCTDEIAPHLRCDTFPCMHRFCIPCMKTWM-QLRN-TCPLCNAK 159
Query: 92 FEFLHVHRSLDGSIS 106
+L V + GS S
Sbjct: 160 LVYLIVGVTPSGSFS 174
>sp|P28284|ICP0_HHV2H E3 ubiquitin-protein ligase ICP0 OS=Human herpesvirus 2 (strain
HG52) GN=RL2 PE=3 SV=1
Length = 825
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGS 104
VCA+C D+ C H +C C+ W +RN TCP C P +L V + GS
Sbjct: 125 VCAVCTDEIAPPLRCQSFPCLHPFCIPCMKTWIP-LRN-TCPLCNTPVAYLIVGVTASGS 182
Query: 105 IS 106
S
Sbjct: 183 FS 184
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHR 99
G+ VCAICLD+ + V C HAY + C+ W + R TCP CK P VHR
Sbjct: 224 GDQYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRK-TCPICKQP-----VHR 277
>sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana
GN=RHF1A PE=1 SV=1
Length = 371
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92
N C+ICL+ LQ+ + V C+H Y CI+ W+ R+ CP C F
Sbjct: 40 NNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQ--RSKECPICWQLF 90
>sp|O42845|YFH7_SCHPO Uncharacterized RING finger protein C23A1.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC23A1.07 PE=4 SV=1
Length = 251
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 44 GVCAICL---DKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94
G+C +C+ D+ V T C H YC CI+ V N +CP CKH F
Sbjct: 190 GLCMMCVQRGDERVAITTPYTTDCGHTYCYACIMSRLKLVNNVSCPICKHRIRF 243
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHR 99
G+ VCAICLD+ + V C HAY + C+ W + R TCP CK P VHR
Sbjct: 224 GDEYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRK-TCPICKQP-----VHR 277
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHR 99
G+ VCAICLD+ + + C HAY + C+ W + R TCP CK P VHR
Sbjct: 224 GDEYDVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRK-TCPICKQP-----VHR 277
>sp|Q3KPU8|RN166_XENLA RING finger protein 166 OS=Xenopus laevis GN=rnf166 PE=2 SV=1
Length = 241
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 30 SKADNREMGFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCK 89
S AD+ E FG C ICL+ V + + C H +C C L+ V +P CP C+
Sbjct: 26 SSADSLETQFG-----CPICLE--VYYKPVAIGSCGHTFCGEC-LQPCLQVSSPLCPLCR 77
Query: 90 HPFEFLHVHRS--LDGSISDY 108
PF+ V ++ +D +S Y
Sbjct: 78 MPFDPKKVDKASNVDKQLSSY 98
>sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1
SV=1
Length = 1045
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 14/86 (16%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE-FLHVHRSLDGS 104
C ICLD+ + + C H +C C+ W+ CP CK PF+ H R+ D
Sbjct: 103 CPICLDR--FDNVSYLDRCLHKFCFRCVQEWSK--NKAECPLCKQPFDSIFHSVRAEDD- 157
Query: 105 ISDYMFEESVCLLLRATWFKPLIVED 130
F+E V LR ++ + D
Sbjct: 158 -----FKEYV---LRPSYNGSFVTPD 175
>sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1
SV=1
Length = 1033
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE-FLHVHRSLD 102
C ICLD+ + + C H +C C+ W+ CP CK PF+ H R+ D
Sbjct: 104 CPICLDR--FDNVSYLDRCLHKFCFRCVQEWSK--NKAECPLCKQPFDSIFHSVRAED 157
>sp|P0CH02|AT21B_ARATH Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana
GN=ATL21B PE=3 SV=1
Length = 362
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 15 KGLDNLSISDQGEMQSKADNREMGFGNHGGVCAICLDKTVLQETA-LVKGCEHAYCATCI 73
+GLD +I M+ R G +G VC ICL + V +ET + C+H + A CI
Sbjct: 287 RGLDQSTIEKYKTMELGESRRPPG--TNGIVCPICLSEYVSKETVRFIPECDHCFHAKCI 344
Query: 74 LRWASYVRNPTCPQCKH 90
W + +CP C++
Sbjct: 345 DVWLKI--HGSCPLCRN 359
>sp|B0F0H3|MKRN2_XENLA Probable E3 ubiquitin-protein ligase makorin-2 OS=Xenopus laevis
GN=mkrn2 PE=2 SV=2
Length = 409
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 11/67 (16%)
Query: 40 GNHGGVCAICLDKTVLQETA------LVKGCEHAYCATCILRW--ASYVRNP---TCPQC 88
+ G VC+IC+++ +++ ++ C H YC TCI +W A NP +CP+C
Sbjct: 224 ASEGRVCSICMERVYEKQSPAQRRFRILSDCNHTYCLTCIRQWRCARQFDNPVIKSCPEC 283
Query: 89 KHPFEFL 95
+ EF+
Sbjct: 284 RVISEFV 290
>sp|A5WW08|CHFR_DANRE E3 ubiquitin-protein ligase CHFR OS=Danio rerio GN=chfr PE=2 SV=1
Length = 637
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGS 104
C IC D +L + V+ C H +CA C W R+ CP C+ P E + + L+
Sbjct: 276 TCIICQD--LLYDCISVQPCMHTFCAACYSGWME--RSSFCPTCRCPVERIRKNHILNNL 331
Query: 105 ISDYMFE 111
+ Y+ +
Sbjct: 332 VEAYLLQ 338
>sp|Q9LY41|ATL4_ARATH E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana GN=ATL4
PE=1 SV=1
Length = 334
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 42 HGGVCAICLDKTVLQETA-LVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92
+ G CA+CL K ++ L+ C HA+ A CI W V N TCP C+ P
Sbjct: 113 NSGDCAVCLSKFEPEDQLRLLPLCCHAFHADCIDIW--LVSNQTCPLCRSPL 162
>sp|Q9H000|MKRN2_HUMAN Probable E3 ubiquitin-protein ligase makorin-2 OS=Homo sapiens
GN=MKRN2 PE=2 SV=2
Length = 416
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
Query: 45 VCAICLDKTVLQETA------LVKGCEHAYCATCILRW--ASYVRNP---TCPQCKHPFE 93
VC+IC++ + + +A ++ C H YC +CI +W A NP +CP+C+ E
Sbjct: 237 VCSICMEVILEKASASERRFGILSNCNHTYCLSCIRQWRCAKQFENPIIKSCPECRVISE 296
Query: 94 FL 95
F+
Sbjct: 297 FV 298
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 43 GGV-CAICLDKTVLQETA-LVKGCEHAYCATCILRWASYVRNPTCPQCK 89
GGV CAICL++ +ET L+ C HA+ A+CI W S TCP C+
Sbjct: 124 GGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLS--SRSTCPVCR 170
>sp|Q9ERV1|MKRN2_MOUSE Probable E3 ubiquitin-protein ligase makorin-2 OS=Mus musculus
GN=Mkrn2 PE=2 SV=2
Length = 416
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
Query: 45 VCAICLDKTVLQETA------LVKGCEHAYCATCILRW--ASYVRNP---TCPQCKHPFE 93
VC+IC++ + + +A ++ C H YC +CI +W A NP +CP+C+ E
Sbjct: 237 VCSICMEVILEKASASERRFGILSNCSHTYCLSCIRQWRCAKQFENPIIKSCPECRVISE 296
Query: 94 FL 95
F+
Sbjct: 297 FV 298
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90
G+ VCAICLD+ + + C HAY C+ W + + TCP CK
Sbjct: 234 GDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK-TCPVCKQ 283
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90
G+ VCAICLD+ + + C HAY C+ W + + TCP CK
Sbjct: 234 GDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK-TCPVCKQ 283
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90
G+ VCAICLD+ + + C HAY C+ W + + TCP CK
Sbjct: 234 GDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK-TCPVCKQ 283
>sp|Q810L3|CHFR_MOUSE E3 ubiquitin-protein ligase CHFR OS=Mus musculus GN=Chfr PE=1 SV=1
Length = 664
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGS 104
C IC D +L + ++ C H +CA C W R+ CP C+ P E + + L+
Sbjct: 302 TCIICQD--LLHDCVSLQPCMHTFCAACYSGWME--RSSLCPTCRCPVERICKNHILNNL 357
Query: 105 ISDYMFE 111
+ Y+ +
Sbjct: 358 VEAYLIQ 364
>sp|Q6GLD9|MKRN2_XENTR Probable E3 ubiquitin-protein ligase makorin-2 OS=Xenopus
tropicalis GN=mkrn2 PE=2 SV=1
Length = 418
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 35 REMGF-GNHGGVCAICLDKTVLQET------ALVKGCEHAYCATCILRW--ASYVRNP-- 83
R F + G VC+IC+++ +++ ++ C H YC CI +W A NP
Sbjct: 225 RAFAFQASEGKVCSICMERVYDKQSPSERRFGILSNCHHTYCLACIRQWRCARQFENPVI 284
Query: 84 -TCPQCKHPFEFL 95
+CP+C+ EF+
Sbjct: 285 KSCPECRVISEFV 297
>sp|Q5RF77|CHFR_PONAB E3 ubiquitin-protein ligase CHFR OS=Pongo abelii GN=CHFR PE=2 SV=1
Length = 571
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGS 104
C IC D +L + ++ C H +CA C W R+ CP C+ P E + + L+
Sbjct: 211 TCIICQD--LLHDCVSLQPCMHTFCAACYSGWME--RSSLCPTCRCPVERICKNHILNNL 266
Query: 105 ISDYMFE 111
+ Y+ +
Sbjct: 267 VEAYLIQ 273
>sp|Q4KLR8|ZNRF3_XENLA E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2
SV=1
Length = 784
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90
CAICL+K + E V C H + C+ W ++N TCP C+H
Sbjct: 202 CAICLEKYIDGEELRVIPCTHRFHKRCVDPW--LLQNHTCPHCRH 244
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90
G+ VCAICLD+ + + C HAY C+ W + + TCP CK
Sbjct: 234 GDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK-TCPVCKQ 283
>sp|Q96EP1|CHFR_HUMAN E3 ubiquitin-protein ligase CHFR OS=Homo sapiens GN=CHFR PE=1 SV=2
Length = 664
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGS 104
C IC D +L + ++ C H +CA C W R+ CP C+ P E + + L+
Sbjct: 303 TCIICQD--LLHDCVSLQPCMHTFCAACYSGWME--RSSLCPTCRCPVERICKNHILNNL 358
Query: 105 ISDYMFE 111
+ Y+ +
Sbjct: 359 VEAYLIQ 365
>sp|Q08D68|ZNRF3_XENTR E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3
PE=2 SV=1
Length = 853
Score = 38.9 bits (89), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90
CAICL+K + E V C H + C+ W ++N TCP C+H
Sbjct: 266 CAICLEKYIDGEELRVIPCTHRFHKRCVDPW--LLQNHTCPHCRH 308
>sp|P48754|BRCA1_MOUSE Breast cancer type 1 susceptibility protein homolog OS=Mus musculus
GN=Brca1 PE=1 SV=3
Length = 1812
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPT-CPQCKHPFEFLHVHRSLDGS 104
C ICL+ +++E K C+H +C C+L+ + + P+ CP CK+ RSL GS
Sbjct: 24 CPICLE--LIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNEI----TKRSLQGS 76
Query: 105 ISDYMFEESVCLLLRA 120
E + ++ A
Sbjct: 77 TRFSQLAEELLRIMAA 92
>sp|Q6NML0|ATL76_ARATH E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana GN=ATL76
PE=1 SV=1
Length = 225
Score = 38.9 bits (89), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 34 NREMGFGNHGGVCAICLDKTVLQETA-LVKGCEHAYCATCILRWASYVRNPTCPQCKH 90
+REM G C ICL V E L+ C H + CI +W + + TCP+C+H
Sbjct: 123 SREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQH--HLTCPKCRH 178
>sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8
PE=1 SV=1
Length = 334
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93
VCA+C D V+ ET C H Y CI+ W RN +CP C+ E
Sbjct: 256 VCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLG-TRN-SCPVCRFQLE 302
>sp|Q6LFN2|ZNRF1_PLAF7 RING finger protein PFF0165c OS=Plasmodium falciparum (isolate 3D7)
GN=PFF0165c PE=2 SV=1
Length = 1103
Score = 38.5 bits (88), Expect = 0.040, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93
+C++C++ + ++K C H YC CI RN CPQCK PF+
Sbjct: 1049 ICSVCMEN--FRNYIIIK-CGHIYCNNCIFNNLK-TRNRKCPQCKVPFD 1093
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90
C +CL + +ET + C H + + CIL W S + +CP C+H
Sbjct: 88 CPVCLLEFEAEETVIEMPCHHLFHSNCILPWLS--KTNSCPLCRH 130
>sp|Q5F3B2|RN166_CHICK RING finger protein 166 OS=Gallus gallus GN=RNF166 PE=2 SV=1
Length = 244
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHR--SLDG 103
C ICL+ V + GC H +C C L+ V +P CP C+ PF+ V + S++
Sbjct: 40 CPICLE--VFHRAVGIAGCGHTFCGEC-LQPCLQVPSPLCPLCRMPFDPKKVEKASSVEK 96
Query: 104 SISDY 108
+S Y
Sbjct: 97 QLSSY 101
>sp|Q6BIP2|RAD5_DEBHA DNA repair protein RAD5 OS=Debaryomyces hansenii (strain ATCC 36239
/ CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD5
PE=3 SV=2
Length = 1190
Score = 38.5 bits (88), Expect = 0.043, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 46 CAICLDKTV-LQETALVKGCEHAYCATCILRWASY----VRNPTCPQCKHPFEFLHVH-- 98
C+IC + L E AL C HAYC C+L + + P CP C+ P +
Sbjct: 916 CSICTQSPIPLGEMALTP-CGHAYCLNCVLEHFDFQEKNSQKPLCPNCREPISKYKIFKL 974
Query: 99 RSLDGSISDYMF 110
R D S+ + F
Sbjct: 975 RHRDTSVKEIRF 986
>sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis
thaliana GN=BRCA1 PE=2 SV=1
Length = 941
Score = 38.5 bits (88), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92
C ICL L +A+ C H +C CI++ S + TCP CK P+
Sbjct: 16 CPICLS---LYNSAVSLSCNHVFCNACIVK--SMKMDATCPVCKIPY 57
>sp|P09309|IE61_VZVD E3 ubiquitin-protein ligase IE61 OS=Varicella-zoster virus (strain
Dumas) GN=61 PE=1 SV=1
Length = 467
Score = 38.5 bits (88), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 17/86 (19%)
Query: 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE-FLH------- 96
C IC+ + + + C H +C CI W S CP C+ P + LH
Sbjct: 18 TCTICM--STVSDLGKTMPCLHDFCFVCIRAWTSTSVQ--CPLCRCPVQSILHKIVSDTS 73
Query: 97 -----VHRSLDGSISDYMFEESVCLL 117
VH S D S+ FE+S+ +L
Sbjct: 74 YKEYEVHPSDDDGFSEPSFEDSIDIL 99
>sp|P36096|TUL1_YEAST Transmembrane E3 ubiquitin-protein ligase 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TUL1 PE=1
SV=1
Length = 758
Score = 38.5 bits (88), Expect = 0.046, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 24/96 (25%)
Query: 9 DGEELVKGLDNLSISDQGEMQSKADNREMGFGNHGGVCAICLDKT------------VLQ 56
DG K L N IS+ G G H CAIC+ V Q
Sbjct: 672 DGYSYFKPLSNEYISEHGG----------GTAEHTVDCAICMSDVPIYIEEIPETHKVDQ 721
Query: 57 ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92
+ +V C H + +C+ W +Y CP C+ P
Sbjct: 722 HSYMVTPCNHVFHTSCLENWMNY--KLQCPVCRSPL 755
>sp|Q58DK8|TRI38_BOVIN Tripartite motif-containing protein 38 OS=Bos taurus GN=TRIM38
PE=2 SV=1
Length = 460
Score = 38.5 bits (88), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
Query: 44 GVCAICLDKTVLQETALVKGCEHAYCATCIL-------RWASYVRNPTCPQCKHPF 92
C+ICL L A+ C H+YC CI+ R ++ +CPQC+ PF
Sbjct: 10 ATCSICLH---LMTNAVSISCGHSYCHVCIVSFFENLNRMTPGLKTFSCPQCRAPF 62
>sp|Q1MTQ0|BRL1_SCHPO E3 ubiquitin-protein ligase brl1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=brl1 PE=1 SV=1
Length = 692
Score = 38.5 bits (88), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 58 TALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF---EFLHVH 98
+ L+ C HA+C+ C+ + + + TCPQC+ PF + L +H
Sbjct: 649 SKLIPNCGHAFCSNCMEPFYEH-KTSTCPQCETPFSVSDILTIH 691
>sp|Q99496|RING2_HUMAN E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1
SV=1
Length = 336
Score = 38.5 bits (88), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCK 89
+C ICLD +L+ T K C H +CA CI+ A N CP C+
Sbjct: 50 MCPICLD--MLKNTMTTKECLHRFCADCIIT-ALRSGNKECPTCR 91
>sp|Q5R9J5|RING2_PONAB E3 ubiquitin-protein ligase RING2 OS=Pongo abelii GN=RNF2 PE=2
SV=1
Length = 336
Score = 38.5 bits (88), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCK 89
+C ICLD +L+ T K C H +CA CI+ A N CP C+
Sbjct: 50 MCPICLD--MLKNTMTTKECLHRFCADCIIT-ALRSGNKECPTCR 91
>sp|Q9CQJ4|RING2_MOUSE E3 ubiquitin-protein ligase RING2 OS=Mus musculus GN=Rnf2 PE=1
SV=1
Length = 336
Score = 38.5 bits (88), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCK 89
+C ICLD +L+ T K C H +CA CI+ A N CP C+
Sbjct: 50 MCPICLD--MLKNTMTTKECLHRFCADCIIT-ALRSGNKECPTCR 91
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,156,874
Number of Sequences: 539616
Number of extensions: 3710813
Number of successful extensions: 15405
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 429
Number of HSP's that attempted gapping in prelim test: 15208
Number of HSP's gapped (non-prelim): 584
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)