Query 025685
Match_columns 249
No_of_seqs 231 out of 1815
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:25:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.2 5.1E-12 1.1E-16 82.2 1.9 43 45-89 2-44 (44)
2 PF15227 zf-C3HC4_4: zinc fing 99.2 1.6E-11 3.4E-16 79.4 3.7 40 46-88 1-42 (42)
3 PLN03208 E3 ubiquitin-protein 99.1 5.1E-11 1.1E-15 100.4 4.9 53 39-94 14-80 (193)
4 smart00504 Ubox Modified RING 99.1 8.5E-11 1.8E-15 81.7 5.2 58 44-106 2-61 (63)
5 PF13923 zf-C3HC4_2: Zinc fing 99.1 8.2E-11 1.8E-15 74.6 3.4 39 46-88 1-39 (39)
6 KOG0317 Predicted E3 ubiquitin 99.1 7.1E-11 1.5E-15 104.2 3.5 54 36-94 232-285 (293)
7 KOG0823 Predicted E3 ubiquitin 99.1 1.2E-10 2.7E-15 99.9 4.2 53 39-94 43-96 (230)
8 TIGR00599 rad18 DNA repair pro 99.0 2.1E-10 4.5E-15 107.0 5.3 67 39-110 22-90 (397)
9 PF04564 U-box: U-box domain; 99.0 2.9E-10 6.4E-15 82.0 4.8 66 42-111 3-70 (73)
10 PHA02929 N1R/p28-like protein; 99.0 1.7E-10 3.7E-15 100.8 3.9 56 40-97 171-231 (238)
11 PF13920 zf-C3HC4_3: Zinc fing 99.0 2.5E-10 5.4E-15 76.3 3.5 46 43-93 2-48 (50)
12 PF00097 zf-C3HC4: Zinc finger 99.0 3.1E-10 6.8E-15 72.4 3.5 41 46-88 1-41 (41)
13 KOG0287 Postreplication repair 99.0 5E-10 1.1E-14 100.7 5.2 66 41-111 21-88 (442)
14 COG5432 RAD18 RING-finger-cont 99.0 8.4E-10 1.8E-14 97.5 5.4 65 41-110 23-89 (391)
15 PHA02926 zinc finger-like prot 98.9 6.3E-10 1.4E-14 95.2 3.7 60 39-98 166-235 (242)
16 cd00162 RING RING-finger (Real 98.9 1.5E-09 3.3E-14 69.3 3.8 45 45-92 1-45 (45)
17 KOG4628 Predicted E3 ubiquitin 98.9 1.2E-09 2.7E-14 99.7 3.5 50 44-94 230-279 (348)
18 PF12678 zf-rbx1: RING-H2 zinc 98.9 2.7E-09 5.8E-14 77.0 4.2 44 44-89 20-73 (73)
19 TIGR00570 cdk7 CDK-activating 98.8 5.6E-10 1.2E-14 100.5 -0.5 51 43-94 3-55 (309)
20 KOG0320 Predicted E3 ubiquitin 98.8 3E-09 6.6E-14 88.0 2.8 50 42-94 130-179 (187)
21 PF14835 zf-RING_6: zf-RING of 98.8 2.3E-09 5E-14 74.6 1.5 58 42-105 6-65 (65)
22 PF14634 zf-RING_5: zinc-RING 98.7 9.6E-09 2.1E-13 66.8 3.6 44 45-90 1-44 (44)
23 COG5540 RING-finger-containing 98.6 1.9E-08 4.1E-13 89.5 3.8 51 42-93 322-372 (374)
24 PF13445 zf-RING_UBOX: RING-ty 98.6 2.1E-08 4.5E-13 65.0 2.9 41 46-86 1-43 (43)
25 smart00184 RING Ring finger. E 98.6 2.8E-08 6.1E-13 61.1 3.3 39 46-88 1-39 (39)
26 KOG2164 Predicted E3 ubiquitin 98.6 2.7E-08 5.9E-13 94.0 3.0 49 43-94 186-237 (513)
27 COG5243 HRD1 HRD ubiquitin lig 98.6 3E-08 6.5E-13 90.4 3.1 50 40-93 284-345 (491)
28 KOG2177 Predicted E3 ubiquitin 98.5 5.4E-08 1.2E-12 84.9 3.2 64 40-108 10-73 (386)
29 KOG0311 Predicted E3 ubiquitin 98.5 2.3E-08 5E-13 90.6 -0.8 64 39-105 39-105 (381)
30 PF12861 zf-Apc11: Anaphase-pr 98.4 2.3E-07 5E-12 68.4 3.9 51 43-93 21-82 (85)
31 COG5574 PEX10 RING-finger-cont 98.4 1.3E-07 2.7E-12 82.9 2.5 50 41-94 213-263 (271)
32 KOG0802 E3 ubiquitin ligase [P 98.2 5.4E-07 1.2E-11 87.9 1.5 49 40-92 288-340 (543)
33 KOG1785 Tyrosine kinase negati 98.2 8.5E-07 1.9E-11 81.7 2.3 71 21-94 347-417 (563)
34 KOG2660 Locus-specific chromos 98.2 6.4E-07 1.4E-11 80.8 1.1 67 37-107 9-81 (331)
35 KOG0824 Predicted E3 ubiquitin 98.1 1.5E-06 3.2E-11 77.5 2.2 49 42-94 6-54 (324)
36 KOG2879 Predicted E3 ubiquitin 98.0 4.1E-06 8.9E-11 73.9 4.1 56 37-94 233-288 (298)
37 KOG0978 E3 ubiquitin ligase in 98.0 1.7E-06 3.7E-11 85.4 1.1 49 42-94 642-690 (698)
38 PF11789 zf-Nse: Zinc-finger o 97.9 8.7E-06 1.9E-10 55.9 2.7 45 41-87 9-53 (57)
39 KOG1039 Predicted E3 ubiquitin 97.9 6.2E-06 1.3E-10 75.8 2.6 54 41-94 159-222 (344)
40 KOG4159 Predicted E3 ubiquitin 97.9 1.1E-05 2.5E-10 75.5 4.0 49 41-94 82-130 (398)
41 KOG4172 Predicted E3 ubiquitin 97.8 6.7E-06 1.5E-10 55.3 0.8 49 42-94 6-55 (62)
42 smart00744 RINGv The RING-vari 97.8 2.4E-05 5.3E-10 52.0 3.4 44 45-89 1-49 (49)
43 KOG0827 Predicted E3 ubiquitin 97.8 1.8E-05 3.9E-10 72.9 3.1 51 44-94 5-57 (465)
44 KOG1734 Predicted RING-contain 97.7 8.7E-06 1.9E-10 71.7 0.8 56 39-94 220-282 (328)
45 COG5219 Uncharacterized conser 97.7 1.3E-05 2.9E-10 80.5 1.9 54 40-93 1466-1523(1525)
46 KOG0804 Cytoplasmic Zn-finger 97.7 1.2E-05 2.7E-10 75.1 1.3 48 40-93 172-222 (493)
47 KOG0828 Predicted E3 ubiquitin 97.6 1.9E-05 4.1E-10 74.6 1.7 52 41-93 569-634 (636)
48 KOG4265 Predicted E3 ubiquitin 97.6 3.3E-05 7.1E-10 70.6 2.9 49 41-94 288-337 (349)
49 COG5194 APC11 Component of SCF 97.6 5.9E-05 1.3E-09 54.7 3.1 35 58-94 48-82 (88)
50 KOG0297 TNF receptor-associate 97.6 3.6E-05 7.9E-10 72.3 2.1 51 40-94 18-68 (391)
51 COG5152 Uncharacterized conser 97.5 6.1E-05 1.3E-09 63.7 2.8 59 41-104 194-253 (259)
52 KOG1645 RING-finger-containing 97.4 0.00017 3.6E-09 67.0 4.3 54 41-94 2-57 (463)
53 PF11793 FANCL_C: FANCL C-term 97.4 4.1E-05 9E-10 54.7 0.1 51 43-93 2-66 (70)
54 KOG0825 PHD Zn-finger protein 97.4 2.6E-05 5.6E-10 77.2 -1.5 51 43-95 123-173 (1134)
55 KOG1493 Anaphase-promoting com 97.3 4.8E-05 1E-09 54.7 0.1 49 45-93 22-81 (84)
56 COG5222 Uncharacterized conser 97.3 0.00024 5.3E-09 63.6 3.9 46 42-90 273-318 (427)
57 KOG1002 Nucleotide excision re 97.2 0.00015 3.2E-09 69.4 2.1 53 39-94 532-587 (791)
58 KOG1813 Predicted E3 ubiquitin 97.0 0.00035 7.6E-09 62.4 2.0 47 43-94 241-287 (313)
59 KOG4739 Uncharacterized protei 96.9 0.00055 1.2E-08 59.6 2.1 62 44-110 4-65 (233)
60 KOG4275 Predicted E3 ubiquitin 96.8 0.00019 4E-09 64.1 -1.3 42 43-93 300-342 (350)
61 KOG2930 SCF ubiquitin ligase, 96.8 0.00068 1.5E-08 51.6 1.8 49 42-92 45-107 (114)
62 KOG1941 Acetylcholine receptor 96.7 0.00055 1.2E-08 63.3 1.1 50 42-91 364-414 (518)
63 KOG4692 Predicted E3 ubiquitin 96.6 0.0012 2.5E-08 60.5 2.4 50 39-93 418-467 (489)
64 PF14570 zf-RING_4: RING/Ubox 96.3 0.0042 9.2E-08 41.0 2.8 46 46-92 1-47 (48)
65 KOG3800 Predicted E3 ubiquitin 96.2 0.015 3.3E-07 52.0 7.1 68 45-117 2-72 (300)
66 KOG4445 Uncharacterized conser 96.2 0.0013 2.8E-08 59.0 -0.0 54 41-94 113-187 (368)
67 KOG1571 Predicted E3 ubiquitin 96.2 0.0031 6.7E-08 57.9 2.4 47 39-93 301-347 (355)
68 PF14447 Prok-RING_4: Prokaryo 96.1 0.003 6.5E-08 42.8 1.4 46 42-94 6-51 (55)
69 KOG3970 Predicted E3 ubiquitin 96.0 0.016 3.5E-07 50.2 5.7 53 41-94 48-106 (299)
70 KOG1814 Predicted E3 ubiquitin 95.7 0.014 3E-07 54.6 4.5 53 39-91 180-238 (445)
71 KOG1001 Helicase-like transcri 95.7 0.0044 9.4E-08 62.1 1.2 47 44-94 455-501 (674)
72 PHA02825 LAP/PHD finger-like p 95.5 0.015 3.3E-07 47.8 3.7 51 40-94 5-60 (162)
73 KOG4185 Predicted E3 ubiquitin 95.5 0.013 2.8E-07 52.7 3.7 48 43-92 3-54 (296)
74 PF10367 Vps39_2: Vacuolar sor 95.5 0.0062 1.3E-07 46.1 1.2 34 40-74 75-108 (109)
75 PF04641 Rtf2: Rtf2 RING-finge 95.5 0.03 6.4E-07 49.8 5.7 53 39-94 109-162 (260)
76 PHA03096 p28-like protein; Pro 95.5 0.0074 1.6E-07 54.4 1.8 48 44-91 179-232 (284)
77 PF05883 Baculo_RING: Baculovi 95.5 0.0058 1.3E-07 48.9 1.0 36 43-78 26-67 (134)
78 KOG1428 Inhibitor of type V ad 95.4 0.022 4.8E-07 60.5 5.2 54 41-94 3484-3545(3738)
79 PF05290 Baculo_IE-1: Baculovi 95.3 0.019 4.1E-07 45.8 3.4 65 26-94 65-133 (140)
80 KOG4367 Predicted Zn-finger pr 95.3 0.011 2.4E-07 55.7 2.5 35 41-78 2-36 (699)
81 PF12906 RINGv: RING-variant d 95.2 0.011 2.5E-07 38.8 1.7 42 46-88 1-47 (47)
82 KOG2817 Predicted E3 ubiquitin 95.2 0.015 3.2E-07 54.1 2.9 49 42-91 333-383 (394)
83 PHA02862 5L protein; Provision 95.1 0.018 4E-07 46.5 2.9 48 43-94 2-54 (156)
84 KOG3002 Zn finger protein [Gen 95.0 0.019 4.2E-07 52.1 3.1 61 38-106 43-103 (299)
85 KOG1812 Predicted E3 ubiquitin 95.0 0.026 5.5E-07 53.1 4.0 77 42-119 145-233 (384)
86 COG5236 Uncharacterized conser 94.8 0.019 4.1E-07 52.7 2.4 54 38-94 56-109 (493)
87 COG5220 TFB3 Cdk activating ki 94.8 0.014 3.1E-07 51.0 1.4 50 42-92 9-63 (314)
88 KOG0826 Predicted E3 ubiquitin 94.7 0.027 5.8E-07 51.3 3.2 49 40-92 297-345 (357)
89 KOG3039 Uncharacterized conser 94.7 0.031 6.8E-07 49.1 3.4 52 41-94 219-271 (303)
90 PF07800 DUF1644: Protein of u 94.7 0.036 7.7E-07 45.6 3.6 50 42-94 1-92 (162)
91 KOG1952 Transcription factor N 94.7 0.021 4.5E-07 57.7 2.6 52 40-91 188-245 (950)
92 PF02891 zf-MIZ: MIZ/SP-RING z 94.5 0.032 6.9E-07 37.1 2.4 46 43-91 2-50 (50)
93 KOG2114 Vacuolar assembly/sort 94.1 0.027 5.9E-07 56.9 2.0 41 44-91 841-881 (933)
94 PF08746 zf-RING-like: RING-li 94.1 0.06 1.3E-06 34.7 3.0 41 46-88 1-43 (43)
95 KOG1940 Zn-finger protein [Gen 94.1 0.033 7.1E-07 50.0 2.3 54 35-90 150-204 (276)
96 KOG2034 Vacuolar sorting prote 93.8 0.017 3.7E-07 58.6 -0.0 43 35-78 809-851 (911)
97 KOG3161 Predicted E3 ubiquitin 93.7 0.025 5.5E-07 55.6 0.9 43 42-90 10-54 (861)
98 KOG0298 DEAD box-containing he 93.6 0.011 2.3E-07 62.1 -1.8 55 36-94 1146-1200(1394)
99 PF10272 Tmpp129: Putative tra 93.4 0.1 2.2E-06 48.5 4.4 31 64-94 311-352 (358)
100 COG5175 MOT2 Transcriptional r 93.4 0.056 1.2E-06 49.5 2.6 54 40-94 11-65 (480)
101 KOG1100 Predicted E3 ubiquitin 92.6 0.076 1.6E-06 45.8 2.2 40 46-94 161-201 (207)
102 KOG4362 Transcriptional regula 91.4 0.066 1.4E-06 53.3 0.5 51 41-94 19-70 (684)
103 KOG3268 Predicted E3 ubiquitin 90.2 0.22 4.8E-06 41.8 2.4 59 36-94 158-229 (234)
104 KOG3899 Uncharacterized conser 88.8 0.23 4.9E-06 44.8 1.6 31 64-94 325-366 (381)
105 KOG2932 E3 ubiquitin ligase in 87.7 0.36 7.7E-06 43.9 2.1 45 44-94 91-135 (389)
106 PLN02189 cellulose synthase 87.6 0.58 1.3E-05 48.9 3.8 52 41-93 32-87 (1040)
107 PLN02638 cellulose synthase A 86.0 0.88 1.9E-05 47.8 4.2 52 41-93 15-70 (1079)
108 PLN02400 cellulose synthase 85.6 0.72 1.6E-05 48.5 3.3 52 41-93 34-89 (1085)
109 COG5109 Uncharacterized conser 85.5 0.54 1.2E-05 42.8 2.1 50 41-90 334-384 (396)
110 KOG3053 Uncharacterized conser 84.5 0.7 1.5E-05 41.0 2.3 54 39-94 16-83 (293)
111 PLN02436 cellulose synthase A 83.6 1.5 3.2E-05 46.2 4.5 52 41-93 34-89 (1094)
112 KOG0825 PHD Zn-finger protein 83.1 0.34 7.4E-06 49.0 -0.2 53 42-94 95-155 (1134)
113 KOG0801 Predicted E3 ubiquitin 82.6 0.47 1E-05 39.3 0.4 30 41-70 175-204 (205)
114 KOG1815 Predicted E3 ubiquitin 82.4 0.88 1.9E-05 43.6 2.3 37 41-79 68-104 (444)
115 KOG3039 Uncharacterized conser 81.8 1.3 2.7E-05 39.2 2.8 38 38-78 38-75 (303)
116 COG5183 SSM4 Protein involved 81.6 1.5 3.2E-05 44.8 3.5 54 40-94 9-67 (1175)
117 PF03854 zf-P11: P-11 zinc fin 81.1 0.7 1.5E-05 30.4 0.7 42 45-93 4-46 (50)
118 PF14812 PBP1_TM: Transmembran 80.2 0.55 1.2E-05 34.4 0.0 29 145-174 42-70 (81)
119 PLN02915 cellulose synthase A 79.2 2.4 5.3E-05 44.5 4.3 52 41-93 13-68 (1044)
120 KOG1609 Protein involved in mR 77.6 1.7 3.6E-05 39.0 2.4 52 42-94 77-135 (323)
121 KOG1812 Predicted E3 ubiquitin 76.3 1.3 2.9E-05 41.6 1.4 44 42-88 305-351 (384)
122 KOG3579 Predicted E3 ubiquitin 76.3 1.2 2.6E-05 40.1 1.0 36 40-78 265-304 (352)
123 PF14569 zf-UDP: Zinc-binding 75.9 3.5 7.7E-05 30.0 3.1 52 41-93 7-62 (80)
124 PF10497 zf-4CXXC_R1: Zinc-fin 75.1 4.8 0.0001 30.9 3.9 49 42-92 6-71 (105)
125 KOG2068 MOT2 transcription fac 74.3 2.6 5.7E-05 38.7 2.6 51 42-94 248-299 (327)
126 KOG0309 Conserved WD40 repeat- 74.0 1.8 4E-05 43.8 1.7 38 46-86 1031-1068(1081)
127 smart00249 PHD PHD zinc finger 73.3 1.7 3.7E-05 26.9 0.9 44 45-88 1-47 (47)
128 PF05605 zf-Di19: Drought indu 73.1 2.1 4.5E-05 28.6 1.3 41 42-92 1-41 (54)
129 PF07975 C1_4: TFIIH C1-like d 69.6 4.6 0.0001 27.0 2.4 27 60-88 23-49 (51)
130 PF07191 zinc-ribbons_6: zinc- 66.6 0.5 1.1E-05 33.7 -2.9 41 44-94 2-42 (70)
131 KOG4718 Non-SMC (structural ma 66.4 3.1 6.8E-05 35.9 1.3 48 42-93 180-227 (235)
132 PF10571 UPF0547: Uncharacteri 65.0 4.1 8.8E-05 23.3 1.2 8 45-52 2-9 (26)
133 PF06906 DUF1272: Protein of u 64.9 9.9 0.00021 25.9 3.2 45 45-93 7-52 (57)
134 KOG1829 Uncharacterized conser 63.7 2.8 6E-05 41.5 0.6 44 40-88 508-556 (580)
135 PLN02195 cellulose synthase A 63.3 8.7 0.00019 40.3 4.0 51 41-92 4-58 (977)
136 COG3813 Uncharacterized protei 62.6 6.1 0.00013 28.4 2.0 45 46-94 8-53 (84)
137 KOG0824 Predicted E3 ubiquitin 61.4 2.5 5.5E-05 38.3 -0.1 52 39-94 101-152 (324)
138 KOG4185 Predicted E3 ubiquitin 60.5 1.4 3.1E-05 39.5 -2.0 47 43-91 207-265 (296)
139 KOG0006 E3 ubiquitin-protein l 59.3 6.1 0.00013 36.3 1.9 38 38-78 216-255 (446)
140 KOG2231 Predicted E3 ubiquitin 59.1 6.9 0.00015 39.4 2.4 46 45-93 2-52 (669)
141 PF13901 DUF4206: Domain of un 57.5 10 0.00022 32.4 2.9 42 41-89 150-196 (202)
142 PF04216 FdhE: Protein involve 55.4 2.3 5E-05 38.3 -1.5 49 40-92 169-221 (290)
143 KOG0827 Predicted E3 ubiquitin 54.5 0.8 1.7E-05 42.9 -4.6 49 44-94 197-246 (465)
144 PF09322 DUF1979: Domain of un 52.9 6.5 0.00014 26.5 0.7 25 164-188 13-42 (58)
145 PF06524 NOA36: NOA36 protein; 52.9 9.2 0.0002 34.2 1.9 33 62-94 186-221 (314)
146 PF14446 Prok-RING_1: Prokaryo 51.4 20 0.00043 24.2 2.9 33 42-74 4-37 (54)
147 KOG2979 Protein involved in DN 50.4 8.9 0.00019 34.1 1.4 48 42-91 175-222 (262)
148 KOG2169 Zn-finger transcriptio 50.4 13 0.00029 37.3 2.8 51 40-94 303-357 (636)
149 KOG2789 Putative Zn-finger pro 49.6 4.6 0.0001 38.0 -0.5 36 42-78 73-108 (482)
150 KOG3113 Uncharacterized conser 48.9 37 0.0008 30.3 5.0 50 41-94 109-159 (293)
151 KOG3842 Adaptor protein Pellin 48.9 20 0.00043 33.0 3.4 55 39-93 337-414 (429)
152 PF06844 DUF1244: Protein of u 48.7 11 0.00023 26.6 1.3 12 67-78 11-22 (68)
153 KOG2066 Vacuolar assembly/sort 47.7 6.9 0.00015 39.9 0.4 37 42-78 783-823 (846)
154 smart00647 IBR In Between Ring 47.1 4.7 0.0001 27.0 -0.7 35 43-77 18-59 (64)
155 PF01363 FYVE: FYVE zinc finge 47.1 7.6 0.00016 26.8 0.4 35 42-76 8-43 (69)
156 KOG0269 WD40 repeat-containing 44.0 20 0.00043 36.6 2.8 40 45-87 781-820 (839)
157 KOG3799 Rab3 effector RIM1 and 43.5 8.9 0.00019 30.9 0.3 28 39-73 61-88 (169)
158 smart00064 FYVE Protein presen 43.4 22 0.00047 24.4 2.3 36 43-78 10-46 (68)
159 PRK11088 rrmA 23S rRNA methylt 41.9 17 0.00038 32.0 2.0 25 44-68 3-27 (272)
160 PF02318 FYVE_2: FYVE-type zin 41.4 18 0.0004 28.0 1.8 48 42-90 53-102 (118)
161 KOG3214 Uncharacterized Zn rib 40.6 11 0.00023 28.8 0.3 40 40-94 20-59 (109)
162 cd00065 FYVE FYVE domain; Zinc 40.0 22 0.00047 23.3 1.8 35 44-78 3-38 (57)
163 KOG2807 RNA polymerase II tran 38.8 25 0.00054 32.5 2.4 44 45-90 332-375 (378)
164 KOG1356 Putative transcription 37.9 9.6 0.00021 39.2 -0.3 34 42-77 228-262 (889)
165 PF10446 DUF2457: Protein of u 37.7 40 0.00087 32.4 3.7 14 66-79 3-18 (458)
166 PRK03564 formate dehydrogenase 37.5 13 0.00029 34.0 0.5 47 40-90 184-234 (309)
167 TIGR01562 FdhE formate dehydro 37.2 12 0.00027 34.1 0.3 47 41-91 182-233 (305)
168 PF00628 PHD: PHD-finger; Int 35.2 25 0.00053 22.5 1.4 45 45-89 1-49 (51)
169 KOG2113 Predicted RNA binding 35.2 34 0.00075 31.5 2.7 49 38-93 338-387 (394)
170 PF04568 IATP: Mitochondrial A 34.8 1E+02 0.0022 23.5 4.9 26 219-244 71-100 (100)
171 PF04710 Pellino: Pellino; In 34.1 13 0.00029 35.0 0.0 51 43-93 328-401 (416)
172 PF13240 zinc_ribbon_2: zinc-r 34.0 7 0.00015 21.6 -1.2 9 82-90 13-21 (23)
173 PRK04023 DNA polymerase II lar 33.9 37 0.0008 36.0 3.1 47 41-94 624-675 (1121)
174 COG4647 AcxC Acetone carboxyla 33.7 22 0.00047 28.5 1.1 21 48-71 62-82 (165)
175 PF10146 zf-C4H2: Zinc finger- 33.0 31 0.00067 30.3 2.1 25 68-94 196-220 (230)
176 PF10235 Cript: Microtubule-as 31.0 31 0.00067 25.8 1.5 38 43-94 44-81 (90)
177 COG5242 TFB4 RNA polymerase II 30.7 23 0.00049 31.2 0.8 12 82-93 274-285 (296)
178 PF04423 Rad50_zn_hook: Rad50 28.9 18 0.0004 23.9 -0.0 11 84-94 22-32 (54)
179 KOG1973 Chromatin remodeling p 27.3 24 0.00053 31.6 0.5 52 39-92 215-269 (274)
180 PF13717 zinc_ribbon_4: zinc-r 26.8 33 0.00071 20.9 0.9 12 44-55 3-14 (36)
181 PF01485 IBR: IBR domain; Int 26.6 8.4 0.00018 25.7 -2.1 33 44-76 19-58 (64)
182 PF10446 DUF2457: Protein of u 25.4 30 0.00065 33.2 0.7 14 164-177 99-112 (458)
183 COG3492 Uncharacterized protei 25.2 36 0.00078 25.6 0.9 13 67-79 42-54 (104)
184 TIGR00622 ssl1 transcription f 25.1 68 0.0015 25.0 2.5 44 44-89 56-110 (112)
185 KOG4451 Uncharacterized conser 24.9 48 0.001 29.2 1.8 25 68-94 251-275 (286)
186 smart00132 LIM Zinc-binding do 24.7 73 0.0016 18.4 2.2 36 46-92 2-37 (39)
187 KOG1815 Predicted E3 ubiquitin 24.6 23 0.00051 33.9 -0.2 36 44-79 227-267 (444)
188 smart00734 ZnF_Rad18 Rad18-lik 24.6 33 0.00071 19.4 0.5 11 83-93 2-12 (26)
189 KOG2462 C2H2-type Zn-finger pr 24.1 33 0.00072 30.9 0.7 52 42-94 160-227 (279)
190 COG0068 HypF Hydrogenase matur 23.7 42 0.00091 34.2 1.4 53 40-94 98-185 (750)
191 COG5627 MMS21 DNA repair prote 23.6 42 0.00092 29.6 1.2 43 43-87 189-231 (275)
192 KOG0314 Predicted E3 ubiquitin 22.8 38 0.00083 32.6 0.9 65 38-103 214-279 (448)
193 PTZ00415 transmission-blocking 22.5 29 0.00064 38.9 0.1 9 82-90 93-101 (2849)
194 PF13832 zf-HC5HC2H_2: PHD-zin 22.4 88 0.0019 23.4 2.7 32 42-75 54-87 (110)
195 KOG4218 Nuclear hormone recept 22.0 64 0.0014 30.2 2.1 24 41-65 13-36 (475)
196 PF10083 DUF2321: Uncharacteri 22.0 52 0.0011 27.1 1.4 25 65-94 27-51 (158)
197 TIGR00373 conserved hypothetic 21.8 28 0.00061 28.5 -0.2 35 40-94 106-140 (158)
198 smart00154 ZnF_AN1 AN1-like Zi 21.3 65 0.0014 20.0 1.4 23 46-70 1-24 (39)
199 PRK06266 transcription initiat 21.3 35 0.00077 28.6 0.3 34 41-94 115-148 (178)
200 KOG3183 Predicted Zn-finger pr 21.1 40 0.00087 29.8 0.6 49 44-94 9-67 (250)
201 PF15616 TerY-C: TerY-C metal 21.0 69 0.0015 25.6 1.9 42 41-93 75-116 (131)
202 PF09297 zf-NADH-PPase: NADH p 20.9 17 0.00036 21.4 -1.3 25 66-90 3-29 (32)
203 smart00531 TFIIE Transcription 20.2 65 0.0014 25.9 1.6 13 81-93 122-134 (147)
204 PF08273 Prim_Zn_Ribbon: Zinc- 20.1 64 0.0014 20.3 1.2 25 44-72 4-32 (40)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.21 E-value=5.1e-12 Score=82.21 Aligned_cols=43 Identities=33% Similarity=0.831 Sum_probs=36.4
Q ss_pred cccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCc
Q 025685 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCK 89 (249)
Q Consensus 45 ~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR 89 (249)
.|+||++.|...+.+..++|||.||..||..|+.. +.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~--~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR--NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH--SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh--CCcCCccC
Confidence 59999999755666778899999999999999984 56999997
No 2
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.20 E-value=1.6e-11 Score=79.35 Aligned_cols=40 Identities=33% Similarity=0.904 Sum_probs=30.7
Q ss_pred ccccccCccCCCceEecCCCCcccHHHHHHHHhcCCC--CCCCCC
Q 025685 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRN--PTCPQC 88 (249)
Q Consensus 46 C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~--~~CP~C 88 (249)
|+||+++ +.+|+ +++|||+||..||..|...... ..||.|
T Consensus 1 CpiC~~~--~~~Pv-~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDL--FKDPV-SLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB---SSEE-E-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchh--hCCcc-ccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999 89999 6799999999999998874333 589987
No 3
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.13 E-value=5.1e-11 Score=100.45 Aligned_cols=53 Identities=32% Similarity=0.740 Sum_probs=43.6
Q ss_pred CCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhc--------------CCCCCCCCCcccCcc
Q 025685 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY--------------VRNPTCPQCKHPFEF 94 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~--------------~~~~~CP~CR~~~~~ 94 (249)
.....+.|+||++. +.+|+ +++|||.||..||..|+.. .....||+||..+..
T Consensus 14 ~~~~~~~CpICld~--~~dPV-vT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 14 DSGGDFDCNICLDQ--VRDPV-VTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred cCCCccCCccCCCc--CCCcE-EcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 34467899999999 78898 6699999999999999752 124689999999875
No 4
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.13 E-value=8.5e-11 Score=81.72 Aligned_cols=58 Identities=21% Similarity=0.386 Sum_probs=49.2
Q ss_pred ccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc--cccchhhhhHHH
Q 025685 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSIS 106 (249)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~--~~~~~~l~~~i~ 106 (249)
+.||||.+. +.+|+ +++|||+||..||..|+.. ...||.|+.++.. +.++..+.+.+.
T Consensus 2 ~~Cpi~~~~--~~~Pv-~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~~~~~~l~~~~~l~~~i~ 61 (63)
T smart00504 2 FLCPISLEV--MKDPV-ILPSGQTYERRAIEKWLLS--HGTDPVTGQPLTHEDLIPNLALKSAIQ 61 (63)
T ss_pred cCCcCCCCc--CCCCE-ECCCCCEEeHHHHHHHHHH--CCCCCCCcCCCChhhceeCHHHHHHHH
Confidence 679999999 88998 6799999999999999984 6789999999865 777777666654
No 5
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.09 E-value=8.2e-11 Score=74.62 Aligned_cols=39 Identities=44% Similarity=1.197 Sum_probs=33.8
Q ss_pred ccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCC
Q 025685 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQC 88 (249)
Q Consensus 46 C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~C 88 (249)
|+||++. +.+|+.+++|||.||..||..|+.. ...||+|
T Consensus 1 C~iC~~~--~~~~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDE--LRDPVVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB---SSEEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCc--ccCcCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 8999999 7889778999999999999999984 6899987
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=7.1e-11 Score=104.23 Aligned_cols=54 Identities=28% Similarity=0.783 Sum_probs=44.8
Q ss_pred ccCCCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 36 EMGFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 36 ~~~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
...-......|.||++. ..+|. ..||||.||++||..|... ...||+||..+.+
T Consensus 232 ~~~i~~a~~kC~LCLe~--~~~pS-aTpCGHiFCWsCI~~w~~e--k~eCPlCR~~~~p 285 (293)
T KOG0317|consen 232 LSSIPEATRKCSLCLEN--RSNPS-ATPCGHIFCWSCILEWCSE--KAECPLCREKFQP 285 (293)
T ss_pred CccCCCCCCceEEEecC--CCCCC-cCcCcchHHHHHHHHHHcc--ccCCCcccccCCC
Confidence 33444556889999999 78887 6699999999999999984 4559999999875
No 7
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.2e-10 Score=99.95 Aligned_cols=53 Identities=28% Similarity=0.659 Sum_probs=45.7
Q ss_pred CCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcC-CCCCCCCCcccCcc
Q 025685 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYV-RNPTCPQCKHPFEF 94 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~-~~~~CP~CR~~~~~ 94 (249)
.....+.|.||++. ..+|| +..|||.||+.||.+|+... ....||+|+..+..
T Consensus 43 ~~~~~FdCNICLd~--akdPV-vTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 43 RDGGFFDCNICLDL--AKDPV-VTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CCCCceeeeeeccc--cCCCE-EeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 35678999999999 99999 66999999999999999853 44678999999876
No 8
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.04 E-value=2.1e-10 Score=106.96 Aligned_cols=67 Identities=24% Similarity=0.525 Sum_probs=57.3
Q ss_pred CCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc--cccchhhhhHHHHhhh
Q 025685 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMF 110 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~--~~~~~~l~~~i~~~~~ 110 (249)
.....+.|+||++. +..|+ +++|||.||..||..|+.. ...||+|+..+.. +..|..+.+++..|..
T Consensus 22 ~Le~~l~C~IC~d~--~~~Pv-itpCgH~FCs~CI~~~l~~--~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 22 PLDTSLRCHICKDF--FDVPV-LTSCSHTFCSLCIRRCLSN--QPKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred ccccccCCCcCchh--hhCcc-CCCCCCchhHHHHHHHHhC--CCCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 34567899999999 78888 6799999999999999973 4579999999876 8888999999987753
No 9
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.03 E-value=2.9e-10 Score=82.00 Aligned_cols=66 Identities=23% Similarity=0.410 Sum_probs=53.5
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc--cccchhhhhHHHHhhhh
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMFE 111 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~--~~~~~~l~~~i~~~~~e 111 (249)
+.+.|||+.++ +.+|+ +++|||+|+..||..|+.. ...+||.|+.++.. +.+|..+...+..|..+
T Consensus 3 ~~f~CpIt~~l--M~dPV-i~~~G~tyer~~I~~~l~~-~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 3 DEFLCPITGEL--MRDPV-ILPSGHTYERSAIERWLEQ-NGGTDPFTRQPLSESDLIPNRALKSAIEEWCAE 70 (73)
T ss_dssp GGGB-TTTSSB---SSEE-EETTSEEEEHHHHHHHHCT-TSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHH
T ss_pred cccCCcCcCcH--hhCce-eCCcCCEEcHHHHHHHHHc-CCCCCCCCCCcCCcccceECHHHHHHHHHHHHH
Confidence 57899999999 99999 6699999999999999984 58899999999987 89999999999987654
No 10
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.03 E-value=1.7e-10 Score=100.82 Aligned_cols=56 Identities=32% Similarity=0.828 Sum_probs=42.7
Q ss_pred CCCcccccccccCccCCCc-----eEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCccccc
Q 025685 40 GNHGGVCAICLDKTVLQET-----ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHV 97 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~p-----v~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~~~~ 97 (249)
...+..|+||++.+..... ..+++|+|.||..||..|+. ...+||+||.++..+..
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~--~~~tCPlCR~~~~~v~~ 231 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK--EKNTCPVCRTPFISVIK 231 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh--cCCCCCCCCCEeeEEee
Confidence 3457899999998421110 23568999999999999998 57789999999876443
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.02 E-value=2.5e-10 Score=76.27 Aligned_cols=46 Identities=30% Similarity=0.890 Sum_probs=38.7
Q ss_pred cccccccccCccCCCceEecCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 43 GGVCAICLDKTVLQETALVKGCEHA-YCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~l~CgH~-FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
+..|.||++. ..+++ ++||||. ||..|+.+|.. ....||+||.++.
T Consensus 2 ~~~C~iC~~~--~~~~~-~~pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFEN--PRDVV-LLPCGHLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSS--BSSEE-EETTCEEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred cCCCccCCcc--CCceE-EeCCCChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 5689999999 66665 7799999 99999999998 6788999999875
No 12
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.00 E-value=3.1e-10 Score=72.42 Aligned_cols=41 Identities=29% Similarity=1.036 Sum_probs=36.9
Q ss_pred ccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCC
Q 025685 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQC 88 (249)
Q Consensus 46 C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~C 88 (249)
|+||++. +..++.+++|||.||..||..|+.......||.|
T Consensus 1 C~iC~~~--~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEP--FEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSB--CSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcc--ccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999 7888878999999999999999985577889988
No 13
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.98 E-value=5e-10 Score=100.71 Aligned_cols=66 Identities=27% Similarity=0.646 Sum_probs=57.2
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc--cccchhhhhHHHHhhhh
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMFE 111 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~--~~~~~~l~~~i~~~~~e 111 (249)
+.-+.|.||+++ +..|+ +.||+|+||.-||..++. ....||.|+.++.. +..|..+.+++..|.+-
T Consensus 21 D~lLRC~IC~ey--f~ip~-itpCsHtfCSlCIR~~L~--~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~ 88 (442)
T KOG0287|consen 21 DDLLRCGICFEY--FNIPM-ITPCSHTFCSLCIRKFLS--YKPQCPTCCVTVTESDLRNNRILDEIVKSLNFA 88 (442)
T ss_pred HHHHHHhHHHHH--hcCce-eccccchHHHHHHHHHhc--cCCCCCceecccchhhhhhhhHHHHHHHHHHHH
Confidence 456789999999 78888 568999999999999998 46789999999987 88889999999887653
No 14
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.95 E-value=8.4e-10 Score=97.50 Aligned_cols=65 Identities=22% Similarity=0.395 Sum_probs=54.4
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc--cccchhhhhHHHHhhh
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMF 110 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~--~~~~~~l~~~i~~~~~ 110 (249)
+..+.|-||-+. +..|+ ..+|||+||.-||.+++. ....||+||.++.. +..+..+..+++.|..
T Consensus 23 Ds~lrC~IC~~~--i~ip~-~TtCgHtFCslCIR~hL~--~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 23 DSMLRCRICDCR--ISIPC-ETTCGHTFCSLCIRRHLG--TQPFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred hhHHHhhhhhhe--eecce-ecccccchhHHHHHHHhc--CCCCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 456789999999 77887 669999999999999998 57889999999877 6777777777777654
No 15
>PHA02926 zinc finger-like protein; Provisional
Probab=98.93 E-value=6.3e-10 Score=95.17 Aligned_cols=60 Identities=25% Similarity=0.634 Sum_probs=44.4
Q ss_pred CCCCcccccccccCccCC------CceEecCCCCcccHHHHHHHHhcC----CCCCCCCCcccCcccccc
Q 025685 39 FGNHGGVCAICLDKTVLQ------ETALVKGCEHAYCATCILRWASYV----RNPTCPQCKHPFEFLHVH 98 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~------~pv~~l~CgH~FC~~CI~~w~~~~----~~~~CP~CR~~~~~~~~~ 98 (249)
..+.+.+|+||++.+... ....+.+|+|.||..||..|.... ....||+||..+..+.+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 445678999999984111 123467999999999999999742 245799999998875444
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.90 E-value=1.5e-09 Score=69.28 Aligned_cols=45 Identities=36% Similarity=1.048 Sum_probs=38.2
Q ss_pred cccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 025685 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92 (249)
Q Consensus 45 ~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~ 92 (249)
.|+||++. +..++.+.+|||.||..|+..|+.. ....||.|+..+
T Consensus 1 ~C~iC~~~--~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEE--FREPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchh--hhCceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCcC
Confidence 49999999 5677767779999999999999984 477899998753
No 17
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.2e-09 Score=99.70 Aligned_cols=50 Identities=28% Similarity=0.687 Sum_probs=44.5
Q ss_pred ccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.+|+||++.|...+.+.+|||.|.||..||..|+.. ....||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~-~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQ-TRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhh-cCccCCCCCCcCCC
Confidence 499999999888899999999999999999999985 35679999998754
No 18
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.85 E-value=2.7e-09 Score=77.04 Aligned_cols=44 Identities=32% Similarity=0.744 Sum_probs=33.8
Q ss_pred ccccccccCcc----------CCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCc
Q 025685 44 GVCAICLDKTV----------LQETALVKGCEHAYCATCILRWASYVRNPTCPQCK 89 (249)
Q Consensus 44 ~~C~ICl~~~~----------~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR 89 (249)
..|+||++.|. ..-++...+|||.||..||.+|+. ...+||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~--~~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK--QNNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT--TSSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh--cCCcCCCCC
Confidence 34999999951 123455678999999999999998 466999997
No 19
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.82 E-value=5.6e-10 Score=100.46 Aligned_cols=51 Identities=22% Similarity=0.538 Sum_probs=37.6
Q ss_pred cccccccccCc--cCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 43 GGVCAICLDKT--VLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 43 ~~~C~ICl~~~--~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
+..||||.... .......+.+|||.||.+||..++.. +...||.|+.++..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~-~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC-CCCCCCCCCCccch
Confidence 46799999952 11112234489999999999996653 56789999998875
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3e-09 Score=87.98 Aligned_cols=50 Identities=26% Similarity=0.660 Sum_probs=40.4
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.-..|||||+.+....|+ ...|||.||..||...+. ....||+|++.++.
T Consensus 130 ~~~~CPiCl~~~sek~~v-sTkCGHvFC~~Cik~alk--~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPV-STKCGHVFCSQCIKDALK--NTNKCPTCRKKITH 179 (187)
T ss_pred cccCCCceecchhhcccc-ccccchhHHHHHHHHHHH--hCCCCCCcccccch
Confidence 347799999995444454 469999999999999998 56789999987764
No 21
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.77 E-value=2.3e-09 Score=74.59 Aligned_cols=58 Identities=36% Similarity=0.802 Sum_probs=30.8
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc--ccccchhhhhHH
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE--FLHVHRSLDGSI 105 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~--~~~~~~~l~~~i 105 (249)
+-+.|++|.++ +..|+.+..|.|.||..||...+. ..||+|+.+.. ++..|+.+++++
T Consensus 6 ~lLrCs~C~~~--l~~pv~l~~CeH~fCs~Ci~~~~~----~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDI--LKEPVCLGGCEHIFCSSCIRDCIG----SECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S----SS-B---SSS--B-TTTGGGGTT----TB-SSS--B-S-SS----HHHHHHH
T ss_pred HhcCCcHHHHH--hcCCceeccCccHHHHHHhHHhcC----CCCCCcCChHHHHHHHhhhhhhccC
Confidence 34779999999 899998899999999999977554 34999999874 488888888764
No 22
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.74 E-value=9.6e-09 Score=66.81 Aligned_cols=44 Identities=25% Similarity=0.832 Sum_probs=36.4
Q ss_pred cccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcc
Q 025685 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90 (249)
Q Consensus 45 ~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~ 90 (249)
.|+||+..|....+..+++|||+||..|+..+.. ....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~--~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKG--KSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcC--CCCCCcCCCC
Confidence 4999999963355666899999999999999883 6788999974
No 23
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.9e-08 Score=89.52 Aligned_cols=51 Identities=25% Similarity=0.699 Sum_probs=43.1
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
-+..|+||+..|...+.+.++||.|.||..|+..|+.. -...||+||.+++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~-y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG-YSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhh-hcccCCccCCCCC
Confidence 34779999999755567889999999999999999983 4678999999875
No 24
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.64 E-value=2.1e-08 Score=64.98 Aligned_cols=41 Identities=24% Similarity=0.737 Sum_probs=23.2
Q ss_pred ccccccCccCCCceEecCCCCcccHHHHHHHHhcC--CCCCCC
Q 025685 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYV--RNPTCP 86 (249)
Q Consensus 46 C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~--~~~~CP 86 (249)
||||.+.-...++..+++|||+||..||..++... ..+.||
T Consensus 1 CpIc~e~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCccccccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 89999932334555588999999999999998843 456777
No 25
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.64 E-value=2.8e-08 Score=61.10 Aligned_cols=39 Identities=44% Similarity=1.189 Sum_probs=33.0
Q ss_pred ccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCC
Q 025685 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQC 88 (249)
Q Consensus 46 C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~C 88 (249)
|+||++. ...++ +++|||.||..|+..|+. .....||.|
T Consensus 1 C~iC~~~--~~~~~-~~~C~H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE--LKDPV-VLPCGHTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccC--CCCcE-EecCCChHHHHHHHHHHH-hCcCCCCCC
Confidence 8999998 56665 779999999999999998 356779987
No 26
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.7e-08 Score=94.01 Aligned_cols=49 Identities=29% Similarity=0.788 Sum_probs=40.7
Q ss_pred cccccccccCccCCCceEecCCCCcccHHHHHHHHhcC---CCCCCCCCcccCcc
Q 025685 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYV---RNPTCPQCKHPFEF 94 (249)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~---~~~~CP~CR~~~~~ 94 (249)
+..||||++. ..-|+.+ .|||.||..||..++... +-..||+|+..|..
T Consensus 186 ~~~CPICL~~--~~~p~~t-~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEP--PSVPVRT-NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCC--CCccccc-ccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 7899999999 7778745 699999999999977642 34689999998765
No 27
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3e-08 Score=90.37 Aligned_cols=50 Identities=30% Similarity=0.741 Sum_probs=41.5
Q ss_pred CCCcccccccccCccCCCc------------eEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 40 GNHGGVCAICLDKTVLQET------------ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~p------------v~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
.+.+..|.||++.+ -.| ...+||||.+|..|++.|.+ ...+||+||.++-
T Consensus 284 ~n~D~~C~ICmde~--~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E--RqQTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEM--FHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE--RQQTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccc--cCCCCccCcccccCCcccccccceeeHHHHHHHHH--hccCCCcccCccc
Confidence 67889999999983 222 14689999999999999999 6788999999954
No 28
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=5.4e-08 Score=84.95 Aligned_cols=64 Identities=25% Similarity=0.571 Sum_probs=48.5
Q ss_pred CCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcccccchhhhhHHHHh
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGSISDY 108 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~~~~~~~l~~~i~~~ 108 (249)
..+.+.|+||++. +..| .+++|+|+||..||..+.. ....||.||.....+..|..+.+++..+
T Consensus 10 ~~~~~~C~iC~~~--~~~p-~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr~~~~~~~~n~~l~~~~~~~ 73 (386)
T KOG2177|consen 10 LQEELTCPICLEY--FREP-VLLPCGHNFCRACLTRSWE--GPLSCPVCRPPSRNLRPNVLLANLVERL 73 (386)
T ss_pred ccccccChhhHHH--hhcC-ccccccchHhHHHHHHhcC--CCcCCcccCCchhccCccHHHHHHHHHH
Confidence 3467889999999 7778 5889999999999999887 5688999995222244555555555543
No 29
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.3e-08 Score=90.59 Aligned_cols=64 Identities=30% Similarity=0.641 Sum_probs=50.1
Q ss_pred CCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc---cccchhhhhHH
Q 025685 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF---LHVHRSLDGSI 105 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~---~~~~~~l~~~i 105 (249)
...-.+.|+||+++ +.....+..|+|.||..||...+.. ++..||.||+.+.. +.....+..++
T Consensus 39 ~~~~~v~c~icl~l--lk~tmttkeClhrfc~~ci~~a~r~-gn~ecptcRk~l~SkrsLr~Dp~fdaLi 105 (381)
T KOG0311|consen 39 MFDIQVICPICLSL--LKKTMTTKECLHRFCFDCIWKALRS-GNNECPTCRKKLVSKRSLRIDPNFDALI 105 (381)
T ss_pred HhhhhhccHHHHHH--HHhhcccHHHHHHHHHHHHHHHHHh-cCCCCchHHhhccccccCCCCccHHHHH
Confidence 44567889999999 6666778899999999999887774 78899999998876 55554444433
No 30
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.43 E-value=2.3e-07 Score=68.40 Aligned_cols=51 Identities=29% Similarity=0.713 Sum_probs=38.7
Q ss_pred cccccccccCcc----------CCCceEecCCCCcccHHHHHHHHhcC-CCCCCCCCcccCc
Q 025685 43 GGVCAICLDKTV----------LQETALVKGCEHAYCATCILRWASYV-RNPTCPQCKHPFE 93 (249)
Q Consensus 43 ~~~C~ICl~~~~----------~~~pv~~l~CgH~FC~~CI~~w~~~~-~~~~CP~CR~~~~ 93 (249)
+..|+||...|. ..-|+..-.|+|.||..||..|+... ....||+||+++.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 566777776652 12355566899999999999999853 4579999999874
No 31
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.3e-07 Score=82.93 Aligned_cols=50 Identities=24% Similarity=0.685 Sum_probs=41.3
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHH-HHhcCCCCCCCCCcccCcc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILR-WASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~-w~~~~~~~~CP~CR~~~~~ 94 (249)
.-+..|+||++. ...|. ..+|||.||..||.. |-.. ..-.||+||..+..
T Consensus 213 ~~d~kC~lC~e~--~~~ps-~t~CgHlFC~~Cl~~~~t~~-k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEE--PEVPS-CTPCGHLFCLSCLLISWTKK-KYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecc--cCCcc-cccccchhhHHHHHHHHHhh-ccccCchhhhhccc
Confidence 347889999999 88887 679999999999999 7763 44559999998753
No 32
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=5.4e-07 Score=87.94 Aligned_cols=49 Identities=29% Similarity=0.783 Sum_probs=40.5
Q ss_pred CCCcccccccccCccCCCc----eEecCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 025685 40 GNHGGVCAICLDKTVLQET----ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~p----v~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~ 92 (249)
......|+||.+. +..+ ...++|+|.||..|+..|+. ...+||.||..+
T Consensus 288 ~~~~~~C~IC~e~--l~~~~~~~~~rL~C~Hifh~~CL~~W~e--r~qtCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEE--LHSGHNITPKRLPCGHIFHDSCLRSWFE--RQQTCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechh--hccccccccceeecccchHHHHHHHHHH--HhCcCCcchhhh
Confidence 3457889999999 5542 34789999999999999999 578899999944
No 33
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.17 E-value=8.5e-07 Score=81.68 Aligned_cols=71 Identities=20% Similarity=0.526 Sum_probs=55.0
Q ss_pred CcchhhhhhhhccccccCCCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 21 SISDQGEMQSKADNREMGFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 21 ~~~~~~~~~~~~e~~~~~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
..++...+..++.......+.....|.||-+. ...+.+-||||..|..|+..|.......+||.||..+.-
T Consensus 347 ~p~d~i~VtqEQyeLYceMgsTFeLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 347 PPQDRIKVTQEQYELYCEMGSTFELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred CcccceeeeHHHHHHHHHccchHHHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 34444555555555566677778889999998 445568899999999999999976568899999998865
No 34
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.15 E-value=6.4e-07 Score=80.76 Aligned_cols=67 Identities=21% Similarity=0.548 Sum_probs=53.2
Q ss_pred cCCCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc------cccchhhhhHHHH
Q 025685 37 MGFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF------LHVHRSLDGSISD 107 (249)
Q Consensus 37 ~~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~------~~~~~~l~~~i~~ 107 (249)
....+...+|.+|..+ +.++..+.-|-|+||.+||..++. ....||.|...+.. +....+++.++..
T Consensus 9 ~~~~n~~itC~LC~GY--liDATTI~eCLHTFCkSCivk~l~--~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 9 LTELNPHITCRLCGGY--LIDATTITECLHTFCKSCIVKYLE--ESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK 81 (331)
T ss_pred hhhcccceehhhccce--eecchhHHHHHHHHHHHHHHHHHH--HhccCCccceeccCccccccCCcchHHHHHHHH
Confidence 3456788999999999 777777889999999999999998 48889999888765 3444555555544
No 35
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.5e-06 Score=77.52 Aligned_cols=49 Identities=24% Similarity=0.529 Sum_probs=41.3
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
....|+||+.. ...|+ .++|+|.||.-||..-... ...+||+||.+|..
T Consensus 6 ~~~eC~IC~nt--~n~Pv-~l~C~HkFCyiCiKGsy~n-dk~~CavCR~pids 54 (324)
T KOG0824|consen 6 KKKECLICYNT--GNCPV-NLYCFHKFCYICIKGSYKN-DKKTCAVCRFPIDS 54 (324)
T ss_pred cCCcceeeecc--CCcCc-cccccchhhhhhhcchhhc-CCCCCceecCCCCc
Confidence 34679999999 77886 7899999999999884443 56789999999987
No 36
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=4.1e-06 Score=73.86 Aligned_cols=56 Identities=25% Similarity=0.528 Sum_probs=46.8
Q ss_pred cCCCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 37 MGFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 37 ~~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
......+.+|++|-+. ...|..+.+|+|.||..||..-......++||.|..+...
T Consensus 233 ss~~t~~~~C~~Cg~~--PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 233 SSTGTSDTECPVCGEP--PTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred cccccCCceeeccCCC--CCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 3445678899999999 8899988889999999999986665567899999887754
No 37
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.7e-06 Score=85.40 Aligned_cols=49 Identities=22% Similarity=0.712 Sum_probs=41.8
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.-+.||+|..- +.+.+ ++.|||.||..||.+.... ....||.|...|..
T Consensus 642 ~~LkCs~Cn~R--~Kd~v-I~kC~H~FC~~Cvq~r~et-RqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 642 ELLKCSVCNTR--WKDAV-ITKCGHVFCEECVQTRYET-RQRKCPKCNAAFGA 690 (698)
T ss_pred hceeCCCccCc--hhhHH-HHhcchHHHHHHHHHHHHH-hcCCCCCCCCCCCc
Confidence 45789999987 66776 7799999999999998774 67889999999864
No 38
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.90 E-value=8.7e-06 Score=55.92 Aligned_cols=45 Identities=22% Similarity=0.467 Sum_probs=33.1
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCC
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQ 87 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~ 87 (249)
.-.+.|||.+.. +.+|+....|||+|....|..|+.......||+
T Consensus 9 ~~~~~CPiT~~~--~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQP--FEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB---SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCCh--hhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 356889999999 899998899999999999999996556788998
No 39
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=6.2e-06 Score=75.83 Aligned_cols=54 Identities=26% Similarity=0.837 Sum_probs=41.3
Q ss_pred CCcccccccccCccCCC-----ceEecCCCCcccHHHHHHHHhcCC-----CCCCCCCcccCcc
Q 025685 41 NHGGVCAICLDKTVLQE-----TALVKGCEHAYCATCILRWASYVR-----NPTCPQCKHPFEF 94 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~-----pv~~l~CgH~FC~~CI~~w~~~~~-----~~~CP~CR~~~~~ 94 (249)
..+.+|.||++.+.... -.++++|.|.||..||..|....+ ...||.||.+...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 56788999999952211 112467999999999999996434 5789999998876
No 40
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=1.1e-05 Score=75.49 Aligned_cols=49 Identities=24% Similarity=0.641 Sum_probs=43.1
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
...+.|.||+.. +..|+ ++||||+||..||.+.+. ....||.||..+..
T Consensus 82 ~sef~c~vc~~~--l~~pv-~tpcghs~c~~Cl~r~ld--~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRA--LYPPV-VTPCGHSFCLECLDRSLD--QETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhh--cCCCc-cccccccccHHHHHHHhc--cCCCCccccccccc
Confidence 578999999999 88998 559999999999999666 67889999999875
No 41
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=6.7e-06 Score=55.33 Aligned_cols=49 Identities=27% Similarity=0.672 Sum_probs=39.6
Q ss_pred CcccccccccCccCCCceEecCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHA-YCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~-FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.+.+|.||++. ..+.+ +..|||. .|..|-.+.... ....||+||.++..
T Consensus 6 ~~dECTICye~--pvdsV-lYtCGHMCmCy~Cg~rl~~~-~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 6 WSDECTICYEH--PVDSV-LYTCGHMCMCYACGLRLKKA-LHGCCPICRAPIKD 55 (62)
T ss_pred cccceeeeccC--cchHH-HHHcchHHhHHHHHHHHHHc-cCCcCcchhhHHHH
Confidence 34789999999 77777 6799996 799998886553 67789999998753
No 42
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.79 E-value=2.4e-05 Score=52.03 Aligned_cols=44 Identities=32% Similarity=0.698 Sum_probs=34.7
Q ss_pred cccccccCccCCCceEecCCC-----CcccHHHHHHHHhcCCCCCCCCCc
Q 025685 45 VCAICLDKTVLQETALVKGCE-----HAYCATCILRWASYVRNPTCPQCK 89 (249)
Q Consensus 45 ~C~ICl~~~~~~~pv~~l~Cg-----H~FC~~CI~~w~~~~~~~~CP~CR 89 (249)
.|.||++.....++. +.||. |.+|..|+.+|+..+....||+|+
T Consensus 1 ~CrIC~~~~~~~~~l-~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPL-VSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCee-EeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 489999832244565 77995 889999999999876778999994
No 43
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1.8e-05 Score=72.87 Aligned_cols=51 Identities=24% Similarity=0.605 Sum_probs=36.6
Q ss_pred ccccccccCccCCCce-EecCCCCcccHHHHHHHHhcCCC-CCCCCCcccCcc
Q 025685 44 GVCAICLDKTVLQETA-LVKGCEHAYCATCILRWASYVRN-PTCPQCKHPFEF 94 (249)
Q Consensus 44 ~~C~ICl~~~~~~~pv-~~l~CgH~FC~~CI~~w~~~~~~-~~CP~CR~~~~~ 94 (249)
..|.||.+.+.....+ .+-.|||+||..|+..|+..... ..||+|+-.+..
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 4699997764322222 23459999999999999996444 589999955543
No 44
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=8.7e-06 Score=71.67 Aligned_cols=56 Identities=25% Similarity=0.597 Sum_probs=44.1
Q ss_pred CCCCcccccccccCccCCC-------ceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 39 FGNHGGVCAICLDKTVLQE-------TALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~-------pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
+..++..|+||-..|.... .+-.+.|+|.||..||..|.......+||.|+..+..
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 3456778999998753222 2346899999999999999987677899999988765
No 45
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.72 E-value=1.3e-05 Score=80.54 Aligned_cols=54 Identities=19% Similarity=0.565 Sum_probs=41.8
Q ss_pred CCCcccccccccCccCCC---c-eEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 40 GNHGGVCAICLDKTVLQE---T-ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~---p-v~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
.....+|+||...+.+.+ | -....|.|.||..|+..|+..+++.+||+||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 345678999998753111 1 12457999999999999999888899999998775
No 46
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.71 E-value=1.2e-05 Score=75.12 Aligned_cols=48 Identities=23% Similarity=0.768 Sum_probs=38.2
Q ss_pred CCCcccccccccCccCCCc---eEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 40 GNHGGVCAICLDKTVLQET---ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~p---v~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
..+-.+||||++. +... +....|.|+||..|+..|.. .+||+||....
T Consensus 172 ~tELPTCpVCLER--MD~s~~gi~t~~c~Hsfh~~cl~~w~~----~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLER--MDSSTTGILTILCNHSFHCSCLMKWWD----SSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhh--cCccccceeeeecccccchHHHhhccc----CcChhhhhhcC
Confidence 3466789999999 4433 35679999999999999986 45999998654
No 47
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=1.9e-05 Score=74.65 Aligned_cols=52 Identities=25% Similarity=0.754 Sum_probs=39.1
Q ss_pred CCcccccccccCccCCC---c-----------eEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 41 NHGGVCAICLDKTVLQE---T-----------ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~---p-----------v~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
.....|+||+..+.+.. + ..+.||.|.||..|+.+|... -...||+||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~-ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT-YKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhh-hcccCCccCCCCC
Confidence 34456999998763221 1 234599999999999999983 3468999999875
No 48
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=3.3e-05 Score=70.58 Aligned_cols=49 Identities=33% Similarity=0.798 Sum_probs=40.6
Q ss_pred CCcccccccccCccCCCceEecCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHA-YCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~-FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.++..|.||+.. ..+.+ ++||.|. .|..|.....- ....||+||++|..
T Consensus 288 ~~gkeCVIClse--~rdt~-vLPCRHLCLCs~Ca~~Lr~--q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSE--SRDTV-VLPCRHLCLCSGCAKSLRY--QTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecC--CcceE-EecchhhehhHhHHHHHHH--hhcCCCccccchHh
Confidence 457889999999 77776 8899996 79999887664 46679999999865
No 49
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.59 E-value=5.9e-05 Score=54.69 Aligned_cols=35 Identities=26% Similarity=0.686 Sum_probs=29.1
Q ss_pred ceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 58 TALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 58 pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
|+..-.|.|.||..||.+|+.. ...||++++++..
T Consensus 48 ~v~wG~CnHaFH~HCI~rWL~T--k~~CPld~q~w~~ 82 (88)
T COG5194 48 PVVWGVCNHAFHDHCIYRWLDT--KGVCPLDRQTWVL 82 (88)
T ss_pred eEEEEecchHHHHHHHHHHHhh--CCCCCCCCceeEE
Confidence 4445679999999999999984 6779999998753
No 50
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.55 E-value=3.6e-05 Score=72.32 Aligned_cols=51 Identities=27% Similarity=0.736 Sum_probs=44.7
Q ss_pred CCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
..+.+.|+||... +.+|+....|||.||..|+..|... ...||.|+..+..
T Consensus 18 ~~~~l~C~~C~~v--l~~p~~~~~cgh~fC~~C~~~~~~~--~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 18 LDENLLCPICMSV--LRDPVQTTTCGHRFCAGCLLESLSN--HQKCPVCRQELTQ 68 (391)
T ss_pred CcccccCcccccc--ccCCCCCCCCCCcccccccchhhcc--CcCCcccccccch
Confidence 4677999999999 8889865799999999999999984 7889999888765
No 51
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.52 E-value=6.1e-05 Score=63.72 Aligned_cols=59 Identities=22% Similarity=0.503 Sum_probs=43.9
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc-cccchhhhhH
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF-LHVHRSLDGS 104 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~-~~~~~~l~~~ 104 (249)
.-.+.|.||... +..|| +..|||.||..|..+-.. ....|-+|.....- +.+...++.+
T Consensus 194 ~IPF~C~iCKkd--y~spv-vt~CGH~FC~~Cai~~y~--kg~~C~~Cgk~t~G~f~V~~d~~km 253 (259)
T COG5152 194 KIPFLCGICKKD--YESPV-VTECGHSFCSLCAIRKYQ--KGDECGVCGKATYGRFWVVSDLQKM 253 (259)
T ss_pred CCceeehhchhh--ccchh-hhhcchhHHHHHHHHHhc--cCCcceecchhhccceeHHhhHHHH
Confidence 345789999999 78898 779999999999877555 46789999776543 4444444433
No 52
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00017 Score=67.00 Aligned_cols=54 Identities=26% Similarity=0.621 Sum_probs=42.2
Q ss_pred CCcccccccccCccCC--CceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 41 NHGGVCAICLDKTVLQ--ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~--~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
+.+.+||||++.|.+. ..+..+.|||.|-..||.+|+.......||.|......
T Consensus 2 d~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katk 57 (463)
T KOG1645|consen 2 DCGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATK 57 (463)
T ss_pred CccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHH
Confidence 3567899999986433 34456899999999999999975556789999776554
No 53
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.38 E-value=4.1e-05 Score=54.72 Aligned_cols=51 Identities=22% Similarity=0.569 Sum_probs=23.4
Q ss_pred cccccccccCcc--CCCceEe---cCCCCcccHHHHHHHHhcC--C-------CCCCCCCcccCc
Q 025685 43 GGVCAICLDKTV--LQETALV---KGCEHAYCATCILRWASYV--R-------NPTCPQCKHPFE 93 (249)
Q Consensus 43 ~~~C~ICl~~~~--~~~pv~~---l~CgH~FC~~CI~~w~~~~--~-------~~~CP~CR~~~~ 93 (249)
...|+||+..+. ...|..+ ..|++.||..||..|+... . ...||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 357999999842 1123323 3799999999999998731 1 125999998874
No 54
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.36 E-value=2.6e-05 Score=77.21 Aligned_cols=51 Identities=25% Similarity=0.511 Sum_probs=38.0
Q ss_pred cccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCccc
Q 025685 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFL 95 (249)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~~ 95 (249)
.-.|++|+..+....-..-.+|+|.||..||..|.. ...+||+||..|..+
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR--~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR--CAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh--hcccCchhhhhhhee
Confidence 345888887642222222358999999999999998 567899999998773
No 55
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=4.8e-05 Score=54.68 Aligned_cols=49 Identities=29% Similarity=0.655 Sum_probs=35.3
Q ss_pred cccccccCccC----------CCceEecCCCCcccHHHHHHHHhcC-CCCCCCCCcccCc
Q 025685 45 VCAICLDKTVL----------QETALVKGCEHAYCATCILRWASYV-RNPTCPQCKHPFE 93 (249)
Q Consensus 45 ~C~ICl~~~~~----------~~pv~~l~CgH~FC~~CI~~w~~~~-~~~~CP~CR~~~~ 93 (249)
+|.||.-.|.- .-|...--|.|.|+..||..|+... +...||+||+.+.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 67777765421 1244334699999999999999853 3468999999874
No 56
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.28 E-value=0.00024 Score=63.57 Aligned_cols=46 Identities=24% Similarity=0.559 Sum_probs=39.8
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~ 90 (249)
-.+.|+.|..+ +.+|+.+..|+|.||..||...+.. ..+.||.|..
T Consensus 273 i~LkCplc~~L--lrnp~kT~cC~~~fc~eci~~al~d-sDf~CpnC~r 318 (427)
T COG5222 273 ISLKCPLCHCL--LRNPMKTPCCGHTFCDECIGTALLD-SDFKCPNCSR 318 (427)
T ss_pred ccccCcchhhh--hhCcccCccccchHHHHHHhhhhhh-ccccCCCccc
Confidence 34899999999 8999988889999999999986653 6789999965
No 57
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.24 E-value=0.00015 Score=69.36 Aligned_cols=53 Identities=25% Similarity=0.615 Sum_probs=42.5
Q ss_pred CCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhc---CCCCCCCCCcccCcc
Q 025685 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY---VRNPTCPQCKHPFEF 94 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~---~~~~~CP~CR~~~~~ 94 (249)
.......|.+|-+. ..+++ ...|.|.||..||..++.. ..+.+||.|...+.-
T Consensus 532 enk~~~~C~lc~d~--aed~i-~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 532 ENKGEVECGLCHDP--AEDYI-ESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred cccCceeecccCCh--hhhhH-hhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 34466789999999 78887 7799999999999887762 345899999877654
No 58
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00035 Score=62.43 Aligned_cols=47 Identities=23% Similarity=0.514 Sum_probs=39.4
Q ss_pred cccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.+.|-||... +..|| +..|+|.||..|-..-+. ....|++|.+.+..
T Consensus 241 Pf~c~icr~~--f~~pV-vt~c~h~fc~~ca~~~~q--k~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKY--FYRPV-VTKCGHYFCEVCALKPYQ--KGEKCYVCSQQTHG 287 (313)
T ss_pred Cccccccccc--cccch-hhcCCceeehhhhccccc--cCCcceeccccccc
Confidence 4669999999 88998 779999999999876554 45789999888765
No 59
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.86 E-value=0.00055 Score=59.62 Aligned_cols=62 Identities=26% Similarity=0.676 Sum_probs=45.0
Q ss_pred ccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcccccchhhhhHHHHhhh
Q 025685 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGSISDYMF 110 (249)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~~~~~~~l~~~i~~~~~ 110 (249)
..|.-|.-.= ...|..++.|+|.||..|...-. ...||+|+.++..+..+..+...+..++.
T Consensus 4 VhCn~C~~~~-~~~~f~LTaC~HvfC~~C~k~~~----~~~C~lCkk~ir~i~l~~slp~~ik~~F~ 65 (233)
T KOG4739|consen 4 VHCNKCFRFP-SQDPFFLTACRHVFCEPCLKASS----PDVCPLCKKSIRIIQLNRSLPTDIKSYFA 65 (233)
T ss_pred EEeccccccC-CCCceeeeechhhhhhhhcccCC----ccccccccceeeeeecccccchhHHHHcc
Confidence 4577777652 35778889999999999975422 23799999998777777666666666544
No 60
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.00019 Score=64.07 Aligned_cols=42 Identities=31% Similarity=0.778 Sum_probs=33.5
Q ss_pred cccccccccCccCCCceEecCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 43 GGVCAICLDKTVLQETALVKGCEHA-YCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~l~CgH~-FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
...|.||++. ..+.+ +|+|||. -|..|-.++. .||+||+.+.
T Consensus 300 ~~LC~ICmDa--P~DCv-fLeCGHmVtCt~CGkrm~------eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDA--PRDCV-FLECGHMVTCTKCGKRMN------ECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcC--CcceE-EeecCcEEeehhhccccc------cCchHHHHHH
Confidence 6679999999 77777 7799995 6888865443 5999998763
No 61
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.00068 Score=51.57 Aligned_cols=49 Identities=29% Similarity=0.588 Sum_probs=35.2
Q ss_pred CcccccccccCcc---------C----C-CceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 025685 42 HGGVCAICLDKTV---------L----Q-ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92 (249)
Q Consensus 42 ~~~~C~ICl~~~~---------~----~-~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~ 92 (249)
.-..|+||...|. . . -.+.--.|.|.||..||.+|+. ....||+|.+..
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlk--tr~vCPLdn~eW 107 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLK--TRNVCPLDNKEW 107 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHh--hcCcCCCcCcce
Confidence 4457999876541 0 0 1122357999999999999998 578899997764
No 62
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.73 E-value=0.00055 Score=63.34 Aligned_cols=50 Identities=20% Similarity=0.501 Sum_probs=40.6
Q ss_pred CcccccccccCccCC-CceEecCCCCcccHHHHHHHHhcCCCCCCCCCccc
Q 025685 42 HGGVCAICLDKTVLQ-ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHP 91 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~-~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~ 91 (249)
.++.|..|-+.|.+. +...-+||.|+||..|+..++......+||.||.-
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 468899999987544 34456899999999999999986567899999853
No 63
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0012 Score=60.53 Aligned_cols=50 Identities=22% Similarity=0.479 Sum_probs=41.2
Q ss_pred CCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
.+.++-.||||..- ..+.+ +.||+|.-|..||.+.+. ....|=.|+..+.
T Consensus 418 p~sEd~lCpICyA~--pi~Av-f~PC~H~SC~~CI~qHlm--N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 418 PDSEDNLCPICYAG--PINAV-FAPCSHRSCYGCITQHLM--NCKRCFFCKTTVI 467 (489)
T ss_pred CCcccccCcceecc--cchhh-ccCCCCchHHHHHHHHHh--cCCeeeEecceee
Confidence 44688899999988 66666 679999999999999887 5677888877653
No 64
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.27 E-value=0.0042 Score=41.01 Aligned_cols=46 Identities=20% Similarity=0.589 Sum_probs=22.7
Q ss_pred ccccccCccCCC-ceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 025685 46 CAICLDKTVLQE-TALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92 (249)
Q Consensus 46 C~ICl~~~~~~~-pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~ 92 (249)
||+|.+.+.... ...--+||+.+|..|+...... ....||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~-~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN-EGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS-S-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc-cCCCCCCCCCCC
Confidence 789998853332 2222378899999999888863 577899999864
No 65
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.015 Score=51.99 Aligned_cols=68 Identities=21% Similarity=0.452 Sum_probs=43.9
Q ss_pred cccccccCccCCCc---eEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcccccchhhhhHHHHhhhhHHHHHH
Q 025685 45 VCAICLDKTVLQET---ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGSISDYMFEESVCLL 117 (249)
Q Consensus 45 ~C~ICl~~~~~~~p---v~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~~~~~~~l~~~i~~~~~eesv~~~ 117 (249)
.||+|.... ..+| ..+-+|+|..|-+|+.+.+.. +...||.|-..+.. +---.+++++.+.+..+-..
T Consensus 2 ~Cp~CKt~~-Y~np~lk~~in~C~H~lCEsCvd~iF~~-g~~~CpeC~~iLRk---~nfr~q~fED~~vekEv~iR 72 (300)
T KOG3800|consen 2 ACPKCKTDR-YLNPDLKLMINECGHRLCESCVDRIFSL-GPAQCPECMVILRK---NNFRVQTFEDPTVEKEVDIR 72 (300)
T ss_pred CCcccccce-ecCccceeeeccccchHHHHHHHHHHhc-CCCCCCcccchhhh---cccchhhcchhHHHHHHHHH
Confidence 499998763 2233 234599999999999998885 77889999776543 11122344444444444333
No 66
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=96.17 E-value=0.0013 Score=59.01 Aligned_cols=54 Identities=24% Similarity=0.592 Sum_probs=40.7
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhc---------------------CCCCCCCCCcccCcc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY---------------------VRNPTCPQCKHPFEF 94 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~---------------------~~~~~CP~CR~~~~~ 94 (249)
-....|.||+.-|-.....++.+|.|-||..|+.+++.. .....||+||..+..
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 356789999988633344667899999999999887762 123469999988765
No 67
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.0031 Score=57.90 Aligned_cols=47 Identities=28% Similarity=0.715 Sum_probs=34.7
Q ss_pred CCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
...-...|.||++. ..+.+ .+||||.-| |+.-.. ....||+||..+.
T Consensus 301 ~~~~p~lcVVcl~e--~~~~~-fvpcGh~cc--ct~cs~---~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDE--PKSAV-FVPCGHVCC--CTLCSK---HLPQCPVCRQRIR 347 (355)
T ss_pred ccCCCCceEEecCC--cccee-eecCCcEEE--chHHHh---hCCCCchhHHHHH
Confidence 34456779999999 66755 679999977 764333 3566999999775
No 68
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.09 E-value=0.003 Score=42.77 Aligned_cols=46 Identities=30% Similarity=0.609 Sum_probs=33.4
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
....|-.|... ....+ ++||||..|..|..-+- ...||.|..+|..
T Consensus 6 ~~~~~~~~~~~--~~~~~-~~pCgH~I~~~~f~~~r----YngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFV--GTKGT-VLPCGHLICDNCFPGER----YNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEcccc--ccccc-cccccceeeccccChhh----ccCCCCCCCcccC
Confidence 34557777766 44554 78999999999975433 4569999988853
No 69
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.016 Score=50.18 Aligned_cols=53 Identities=19% Similarity=0.351 Sum_probs=41.6
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhc------CCCCCCCCCcccCcc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY------VRNPTCPQCKHPFEF 94 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~------~~~~~CP~CR~~~~~ 94 (249)
+....|.+|...+...+.+ .+.|-|.||..|+..|... .....||.|...+-.
T Consensus 48 DY~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 4556799999887556666 6799999999999999863 235689999887753
No 70
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.014 Score=54.58 Aligned_cols=53 Identities=26% Similarity=0.544 Sum_probs=39.4
Q ss_pred CCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhc------CCCCCCCCCccc
Q 025685 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY------VRNPTCPQCKHP 91 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~------~~~~~CP~CR~~ 91 (249)
..+.-+.|.||++...-+.....+||+|.||..|+..++.. .....||.+...
T Consensus 180 F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 180 FVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred HHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 34567889999998534366778999999999999998773 123568776554
No 71
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.67 E-value=0.0044 Score=62.13 Aligned_cols=47 Identities=26% Similarity=0.698 Sum_probs=38.2
Q ss_pred ccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
..|.||++. ..++ +.+|+|.||..|+...........||.||..+..
T Consensus 455 ~~c~ic~~~---~~~~-it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCDL---DSFF-ITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred ccccccccc---ccce-eecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 889999994 4444 7799999999999987765555689999987754
No 72
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.55 E-value=0.015 Score=47.77 Aligned_cols=51 Identities=22% Similarity=0.606 Sum_probs=39.5
Q ss_pred CCCcccccccccCccCCCceEecCCCC-----cccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCEH-----AYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~CgH-----~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.+.+..|-||.+. .. +. ..||.. ..|.+|+.+|+..++...||+|..++..
T Consensus 5 s~~~~~CRIC~~~--~~-~~-~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 5 SLMDKCCWICKDE--YD-VV-TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCCeeEecCCC--CC-Cc-cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 4567789999988 33 22 347664 3499999999998788999999988765
No 73
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.013 Score=52.72 Aligned_cols=48 Identities=23% Similarity=0.505 Sum_probs=37.7
Q ss_pred cccccccccCccCC----CceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 025685 43 GGVCAICLDKTVLQ----ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92 (249)
Q Consensus 43 ~~~C~ICl~~~~~~----~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~ 92 (249)
.+.|-||-+.|... .| .++.|||+||..|+...... ....||.||.+.
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p-~~l~c~h~~c~~c~~~l~~~-~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIP-RVLKCGHTICQNCASKLLGN-SRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCC-cccccCceehHhHHHHHhcC-ceeeccCCCCcc
Confidence 36799999987433 34 36789999999999887764 567789999985
No 74
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.47 E-value=0.0062 Score=46.10 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=27.3
Q ss_pred CCCcccccccccCccCCCceEecCCCCcccHHHHH
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCIL 74 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~ 74 (249)
..++..|++|...| ...+..+.||||.||..|+.
T Consensus 75 i~~~~~C~vC~k~l-~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPL-GNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcC-CCceEEEeCCCeEEeccccc
Confidence 34667799999996 33566678999999999975
No 75
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.47 E-value=0.03 Score=49.85 Aligned_cols=53 Identities=13% Similarity=0.364 Sum_probs=40.9
Q ss_pred CCCCcccccccccCccCC-CceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 39 FGNHGGVCAICLDKTVLQ-ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~-~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.....+.|||....|.-. .-+.+.+|||.|+..+|.... ....||+|-.+|..
T Consensus 109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFTE 162 (260)
T ss_pred cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCcccc
Confidence 346778999999885322 334567999999999998874 34569999999976
No 76
>PHA03096 p28-like protein; Provisional
Probab=95.46 E-value=0.0074 Score=54.43 Aligned_cols=48 Identities=21% Similarity=0.496 Sum_probs=33.0
Q ss_pred ccccccccCccCCCc-----eEecCCCCcccHHHHHHHHhcC-CCCCCCCCccc
Q 025685 44 GVCAICLDKTVLQET-----ALVKGCEHAYCATCILRWASYV-RNPTCPQCKHP 91 (249)
Q Consensus 44 ~~C~ICl~~~~~~~p-----v~~l~CgH~FC~~CI~~w~~~~-~~~~CP~CR~~ 91 (249)
-.|.||++.+....+ ..+..|.|.||..||..|.... ...+||.|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 679999998532211 1246899999999999998742 23456666553
No 77
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.45 E-value=0.0058 Score=48.89 Aligned_cols=36 Identities=25% Similarity=0.577 Sum_probs=28.3
Q ss_pred cccccccccCccCCCceEecCCC------CcccHHHHHHHHh
Q 025685 43 GGVCAICLDKTVLQETALVKGCE------HAYCATCILRWAS 78 (249)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~l~Cg------H~FC~~CI~~w~~ 78 (249)
..+|.||++.|....-+..++|| |.||..|+.+|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 57899999996443455566776 8899999999954
No 78
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.42 E-value=0.022 Score=60.47 Aligned_cols=54 Identities=22% Similarity=0.551 Sum_probs=39.7
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcC--------CCCCCCCCcccCcc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYV--------RNPTCPQCKHPFEF 94 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~--------~~~~CP~CR~~~~~ 94 (249)
+.+..|-||+..--..-|.+.+.|+|.||..|..+.+... +-..||+|+.++..
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 3456799999752134677789999999999998755520 12479999999864
No 79
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=95.31 E-value=0.019 Score=45.84 Aligned_cols=65 Identities=25% Similarity=0.481 Sum_probs=46.2
Q ss_pred hhhhhhccccccCCCCCcccccccccCccCCCceEec---CCCCcccHHHHHH-HHhcCCCCCCCCCcccCcc
Q 025685 26 GEMQSKADNREMGFGNHGGVCAICLDKTVLQETALVK---GCEHAYCATCILR-WASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 26 ~~~~~~~e~~~~~~~~~~~~C~ICl~~~~~~~pv~~l---~CgH~FC~~CI~~-w~~~~~~~~CP~CR~~~~~ 94 (249)
.+++....+++.+. .-.+|.||.+. ..+.-++- -||-..|..|... |........||+|+..|..
T Consensus 65 ~n~r~qvmnvF~d~--~lYeCnIC~et--S~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 65 INRRLQVMNVFLDP--KLYECNICKET--SAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred HHHHHHHheeecCC--CceeccCcccc--cchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 33444444555543 67889999998 55554443 4999999999988 6654567899999998864
No 80
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.30 E-value=0.011 Score=55.65 Aligned_cols=35 Identities=20% Similarity=0.491 Sum_probs=30.2
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHh
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS 78 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~ 78 (249)
.+.+.|+||... +.+|+ +++|+|..|..|-...+.
T Consensus 2 eeelkc~vc~~f--~~epi-il~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSF--YREPI-ILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhh--ccCce-EeecccHHHHHHHHhhcc
Confidence 467889999999 88998 779999999999876555
No 81
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.23 E-value=0.011 Score=38.76 Aligned_cols=42 Identities=31% Similarity=0.735 Sum_probs=27.4
Q ss_pred ccccccCccCCCceEecCCCC-----cccHHHHHHHHhcCCCCCCCCC
Q 025685 46 CAICLDKTVLQETALVKGCEH-----AYCATCILRWASYVRNPTCPQC 88 (249)
Q Consensus 46 C~ICl~~~~~~~pv~~l~CgH-----~FC~~CI~~w~~~~~~~~CP~C 88 (249)
|-||++.-....+ .+.||.- ..|..|+.+|+...+...|++|
T Consensus 1 CrIC~~~~~~~~~-li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEP-LISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCc-eecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6789987322233 4678864 4589999999997677889987
No 82
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.015 Score=54.14 Aligned_cols=49 Identities=16% Similarity=0.342 Sum_probs=39.4
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCC--CCCCCCccc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRN--PTCPQCKHP 91 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~--~~CP~CR~~ 91 (249)
..|.|||=.+.-...+|...+.|||..|..-|.+.... +. +.||.|-..
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~n-g~~sfKCPYCP~e 383 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKN-GSQSFKCPYCPVE 383 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhC-CCeeeeCCCCCcc
Confidence 56899997776445578889999999999999998874 44 899999543
No 83
>PHA02862 5L protein; Provisional
Probab=95.11 E-value=0.018 Score=46.54 Aligned_cols=48 Identities=25% Similarity=0.650 Sum_probs=37.7
Q ss_pred cccccccccCccCCCceEecCCCC-----cccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 43 GGVCAICLDKTVLQETALVKGCEH-----AYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~l~CgH-----~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
+..|-||++. ..+. .-||.. ..|..|+.+|+..++...||+|+.++..
T Consensus 2 ~diCWIC~~~--~~e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDV--CDER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCc--CCCC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 4579999998 4443 347653 5699999999998788999999998754
No 84
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.02 E-value=0.019 Score=52.13 Aligned_cols=61 Identities=18% Similarity=0.444 Sum_probs=42.9
Q ss_pred CCCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcccccchhhhhHHH
Q 025685 38 GFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGSIS 106 (249)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~~~~~~~l~~~i~ 106 (249)
....+-+.||||.+. +..|+.--+=||..|..|-.. -...||.||.++..+ ....+..+++
T Consensus 43 ~~~~~lleCPvC~~~--l~~Pi~QC~nGHlaCssC~~~-----~~~~CP~Cr~~~g~~-R~~amEkV~e 103 (299)
T KOG3002|consen 43 LLDLDLLDCPVCFNP--LSPPIFQCDNGHLACSSCRTK-----VSNKCPTCRLPIGNI-RCRAMEKVAE 103 (299)
T ss_pred ccchhhccCchhhcc--CcccceecCCCcEehhhhhhh-----hcccCCccccccccH-HHHHHHHHHH
Confidence 345567889999999 777865444489999999653 345699999999853 3334444433
No 85
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.026 Score=53.13 Aligned_cols=77 Identities=22% Similarity=0.405 Sum_probs=47.4
Q ss_pred CcccccccccCccCC-CceEecCCCCcccHHHHHHHHhc----CCCCCCC--CCcccCcc-----cccchhhhhHHHHhh
Q 025685 42 HGGVCAICLDKTVLQ-ETALVKGCEHAYCATCILRWASY----VRNPTCP--QCKHPFEF-----LHVHRSLDGSISDYM 109 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~-~pv~~l~CgH~FC~~CI~~w~~~----~~~~~CP--~CR~~~~~-----~~~~~~l~~~i~~~~ 109 (249)
...+|.||+...... ....+..|+|.||..|+.+++.. .....|| .|...+.. +... .+..++..++
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~-kl~e~~e~~~ 223 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP-KLREMWEQRL 223 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH-HHHHHHHHHH
Confidence 467899999442122 22235789999999999998773 2345676 45444444 2222 4566667777
Q ss_pred hhHHHHHHHh
Q 025685 110 FEESVCLLLR 119 (249)
Q Consensus 110 ~eesv~~~~r 119 (249)
.++++....+
T Consensus 224 ~e~~i~~~~~ 233 (384)
T KOG1812|consen 224 KEEVIPSLDR 233 (384)
T ss_pred HHHhhhhhhc
Confidence 7776554443
No 86
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.79 E-value=0.019 Score=52.67 Aligned_cols=54 Identities=24% Similarity=0.522 Sum_probs=40.1
Q ss_pred CCCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 38 GFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
+.+.+...|.||-.-+ .-. .++||+|..|--|-.+.........||+||.....
T Consensus 56 dtDEen~~C~ICA~~~--TYs-~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 56 DTDEENMNCQICAGST--TYS-ARYPCGHQICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred ccccccceeEEecCCc--eEE-EeccCCchHHHHHHHHHHHHHhccCCCccccccce
Confidence 3455678899999983 322 36799999999998875443356789999986544
No 87
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=94.75 E-value=0.014 Score=50.98 Aligned_cols=50 Identities=24% Similarity=0.583 Sum_probs=35.7
Q ss_pred CcccccccccCc--cCCCceEecC-CCCcccHHHHHHHHhcCCCCCCC--CCcccC
Q 025685 42 HGGVCAICLDKT--VLQETALVKG-CEHAYCATCILRWASYVRNPTCP--QCKHPF 92 (249)
Q Consensus 42 ~~~~C~ICl~~~--~~~~pv~~l~-CgH~FC~~CI~~w~~~~~~~~CP--~CR~~~ 92 (249)
.+..||||.... +....+.+-| |-|.+|-+|+.+.++. +...|| -|...+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~-GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR-GPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC-CCCCCCCccHHHHH
Confidence 455799999763 2222233345 9999999999999985 778899 775543
No 88
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.027 Score=51.28 Aligned_cols=49 Identities=24% Similarity=0.582 Sum_probs=39.8
Q ss_pred CCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~ 92 (249)
..+...||||+.. -.+|..+..-|-.||..||-.++. ....||+-..+.
T Consensus 297 ~~~~~~CpvClk~--r~Nptvl~vSGyVfCY~Ci~~Yv~--~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 297 PPDREVCPVCLKK--RQNPTVLEVSGYVFCYPCIFSYVV--NYGHCPVTGYPA 345 (357)
T ss_pred CCccccChhHHhc--cCCCceEEecceEEeHHHHHHHHH--hcCCCCccCCcc
Confidence 3456779999999 778876667799999999999998 567899876654
No 89
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.70 E-value=0.031 Score=49.05 Aligned_cols=52 Identities=13% Similarity=0.308 Sum_probs=40.9
Q ss_pred CCcccccccccCccCCCc-eEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 41 NHGGVCAICLDKTVLQET-ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~p-v~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
+..+.||||.+.+.-..| +.+.+|||.||..|+..+.. .-..||+|-.++..
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir--~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR--KDMVDPVTDKPLKD 271 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc--ccccccCCCCcCcc
Confidence 366889999999532222 34679999999999999887 56789999888865
No 90
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.70 E-value=0.036 Score=45.57 Aligned_cols=50 Identities=18% Similarity=0.547 Sum_probs=34.2
Q ss_pred CcccccccccCccCCCceEecCC------------CCc-ccHHHHHHHHhcC----------------------------
Q 025685 42 HGGVCAICLDKTVLQETALVKGC------------EHA-YCATCILRWASYV---------------------------- 80 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~C------------gH~-FC~~CI~~w~~~~---------------------------- 80 (249)
++.+||||++. .-+.|.+ -| +-. -|..|+.++....
T Consensus 1 ed~~CpICme~--PHNAVLL-lCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (162)
T PF07800_consen 1 EDVTCPICMEH--PHNAVLL-LCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQE 77 (162)
T ss_pred CCccCceeccC--CCceEEE-EeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccc
Confidence 35689999999 8888744 33 222 2567887765520
Q ss_pred -CCCCCCCCcccCcc
Q 025685 81 -RNPTCPQCKHPFEF 94 (249)
Q Consensus 81 -~~~~CP~CR~~~~~ 94 (249)
....||+||..+..
T Consensus 78 ~~~L~CPLCRG~V~G 92 (162)
T PF07800_consen 78 QPELACPLCRGEVKG 92 (162)
T ss_pred cccccCccccCceec
Confidence 13479999999876
No 91
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.70 E-value=0.021 Score=57.73 Aligned_cols=52 Identities=27% Similarity=0.636 Sum_probs=40.4
Q ss_pred CCCcccccccccCccCCCceE-ecCCCCcccHHHHHHHHhcC-----CCCCCCCCccc
Q 025685 40 GNHGGVCAICLDKTVLQETAL-VKGCEHAYCATCILRWASYV-----RNPTCPQCKHP 91 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~-~l~CgH~FC~~CI~~w~~~~-----~~~~CP~CR~~ 91 (249)
.+...+|.||.+.|....|+- -..|-|.||..||..|+... ....||.|...
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 456788999999986666652 25688999999999999841 34689999843
No 92
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=94.53 E-value=0.032 Score=37.14 Aligned_cols=46 Identities=20% Similarity=0.495 Sum_probs=24.8
Q ss_pred cccccccccCccCCCceEecCCCCcccHHHHHHHHh---cCCCCCCCCCccc
Q 025685 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS---YVRNPTCPQCKHP 91 (249)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~---~~~~~~CP~CR~~ 91 (249)
.+.|||.... +..|+....|.|.-|++= ..|+. ......||+|.++
T Consensus 2 sL~CPls~~~--i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQR--IRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB---SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCE--EEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 3679999999 788999999999988764 23333 2356789999763
No 93
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.12 E-value=0.027 Score=56.91 Aligned_cols=41 Identities=24% Similarity=0.639 Sum_probs=35.5
Q ss_pred ccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCccc
Q 025685 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHP 91 (249)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~ 91 (249)
..|..|-.. +.-|+....|||.||..|+. . ....||.|+..
T Consensus 841 skCs~C~~~--LdlP~VhF~CgHsyHqhC~e---~--~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGT--LDLPFVHFLCGHSYHQHCLE---D--KEDKCPKCLPE 881 (933)
T ss_pred eeecccCCc--cccceeeeecccHHHHHhhc---c--CcccCCccchh
Confidence 579999999 88898889999999999997 2 56789999763
No 94
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.12 E-value=0.06 Score=34.66 Aligned_cols=41 Identities=22% Similarity=0.675 Sum_probs=22.2
Q ss_pred ccccccCccCCCceEe--cCCCCcccHHHHHHHHhcCCCCCCCCC
Q 025685 46 CAICLDKTVLQETALV--KGCEHAYCATCILRWASYVRNPTCPQC 88 (249)
Q Consensus 46 C~ICl~~~~~~~pv~~--l~CgH~FC~~CI~~w~~~~~~~~CP~C 88 (249)
|.+|.+++ ..-+.- ..|+-.+|..|+..++.......||.|
T Consensus 1 C~~C~~iv--~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIV--TQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB---SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhH--eeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67888883 333323 259889999999999885444579987
No 95
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=94.12 E-value=0.033 Score=49.96 Aligned_cols=54 Identities=26% Similarity=0.374 Sum_probs=40.4
Q ss_pred cccCCCCCcccccccccCccC-CCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcc
Q 025685 35 REMGFGNHGGVCAICLDKTVL-QETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90 (249)
Q Consensus 35 ~~~~~~~~~~~C~ICl~~~~~-~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~ 90 (249)
|..........||||.+.+.. ...+..++|||..+..|+...... + .+||+|..
T Consensus 150 H~c~e~~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~-~-y~CP~C~~ 204 (276)
T KOG1940|consen 150 HKCVERSSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE-G-YTCPICSK 204 (276)
T ss_pred cchhhhcccCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc-C-CCCCcccc
Confidence 444455566679999998532 234447899999999999887763 4 99999987
No 96
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.82 E-value=0.017 Score=58.60 Aligned_cols=43 Identities=19% Similarity=0.367 Sum_probs=34.5
Q ss_pred cccCCCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHh
Q 025685 35 REMGFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS 78 (249)
Q Consensus 35 ~~~~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~ 78 (249)
+..........|.+|...| +..|..+.||||.||..||.+...
T Consensus 809 ~ry~v~ep~d~C~~C~~~l-l~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 809 QRYRVLEPQDSCDHCGRPL-LIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cceEEecCccchHHhcchh-hcCcceeeeccchHHHHHHHHHHH
Confidence 3344455778899999987 667888999999999999988654
No 97
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=0.025 Score=55.59 Aligned_cols=43 Identities=30% Similarity=0.623 Sum_probs=31.6
Q ss_pred CcccccccccCcc--CCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcc
Q 025685 42 HGGVCAICLDKTV--LQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90 (249)
Q Consensus 42 ~~~~C~ICl~~~~--~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~ 90 (249)
+-+.|+||+..|. -..|+ .+.|||+.|..|+..... .+|| |..
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pv-sl~cghtic~~c~~~lyn----~scp-~~~ 54 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPV-SLQCGHTICGHCVQLLYN----ASCP-TKR 54 (861)
T ss_pred HHhhchHHHHHHHHHhcCcc-cccccchHHHHHHHhHhh----ccCC-CCc
Confidence 4577999987752 22677 679999999999976554 5588 543
No 98
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.64 E-value=0.011 Score=62.09 Aligned_cols=55 Identities=31% Similarity=0.552 Sum_probs=42.8
Q ss_pred ccCCCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 36 EMGFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 36 ~~~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
..........|+||++. +.+-..+..|||.+|..|+..|.. ....||.|...+.+
T Consensus 1146 y~~~~~~~~~c~ic~di--l~~~~~I~~cgh~~c~~c~~~~l~--~~s~~~~~ksi~~d 1200 (1394)
T KOG0298|consen 1146 YLMNLSGHFVCEICLDI--LRNQGGIAGCGHEPCCRCDELWLY--ASSRCPICKSIKGD 1200 (1394)
T ss_pred HHHHhhcccchHHHHHH--HHhcCCeeeechhHhhhHHHHHHH--HhccCcchhhhhhh
Confidence 33445567789999999 564444779999999999999998 57789999865443
No 99
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=93.44 E-value=0.1 Score=48.54 Aligned_cols=31 Identities=26% Similarity=0.865 Sum_probs=23.9
Q ss_pred CCCcccHHHHHHHHhc-----------CCCCCCCCCcccCcc
Q 025685 64 CEHAYCATCILRWASY-----------VRNPTCPQCKHPFEF 94 (249)
Q Consensus 64 CgH~FC~~CI~~w~~~-----------~~~~~CP~CR~~~~~ 94 (249)
|...+|.+|+.+|+.. .+...||.||..|.-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 3456799999999874 234689999999863
No 100
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.42 E-value=0.056 Score=49.54 Aligned_cols=54 Identities=17% Similarity=0.531 Sum_probs=37.8
Q ss_pred CCCcccccccccCccCCCce-EecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 40 GNHGGVCAICLDKTVLQETA-LVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv-~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.+++..||+|++.+...+.- +--+||-..|.-|+...... -+..||.||.....
T Consensus 11 edeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~-lngrcpacrr~y~d 65 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN-LNGRCPACRRKYDD 65 (480)
T ss_pred ccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhh-ccCCChHhhhhccc
Confidence 34455599999986433322 23478888899998776553 45679999998765
No 101
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=0.076 Score=45.82 Aligned_cols=40 Identities=30% Similarity=0.752 Sum_probs=30.7
Q ss_pred ccccccCccCCCceEecCCCC-cccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 46 CAICLDKTVLQETALVKGCEH-AYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 46 C~ICl~~~~~~~pv~~l~CgH-~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
|-+|... ...|.++||.| .+|..|=. +...||+|+.+...
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~------~~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDE------SLRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeecccceEecccccc------cCccCCCCcChhhc
Confidence 9999987 45577899999 58999942 25669999887653
No 102
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=91.41 E-value=0.066 Score=53.34 Aligned_cols=51 Identities=24% Similarity=0.540 Sum_probs=40.0
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcC-CCCCCCCCcccCcc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYV-RNPTCPQCKHPFEF 94 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~-~~~~CP~CR~~~~~ 94 (249)
...++|+||+.. ...|+ .+.|.|.||..|+...+... ....||+|+..+..
T Consensus 19 ~k~lEc~ic~~~--~~~p~-~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 19 QKILECPICLEH--VKEPS-LLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hhhccCCceeEE--eeccc-hhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 356889999999 66775 77999999999998754432 35789999977655
No 103
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.15 E-value=0.22 Score=41.81 Aligned_cols=59 Identities=19% Similarity=0.464 Sum_probs=38.5
Q ss_pred ccCCCCCcccccccccCc-cCCCc---eEecCCCCcccHHHHHHHHhc---C-CC-----CCCCCCcccCcc
Q 025685 36 EMGFGNHGGVCAICLDKT-VLQET---ALVKGCEHAYCATCILRWASY---V-RN-----PTCPQCKHPFEF 94 (249)
Q Consensus 36 ~~~~~~~~~~C~ICl~~~-~~~~p---v~~l~CgH~FC~~CI~~w~~~---~-~~-----~~CP~CR~~~~~ 94 (249)
+....++-.-|.||+.+- .-..| .--..||..||.-|+..|+.. + ++ ..||.|..++..
T Consensus 158 ~Lekdd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 158 FLEKDDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hcCcchhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 344556667788998651 00111 112589999999999999972 1 11 269999888753
No 104
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.77 E-value=0.23 Score=44.78 Aligned_cols=31 Identities=23% Similarity=0.720 Sum_probs=24.4
Q ss_pred CCCcccHHHHHHHHhc-----------CCCCCCCCCcccCcc
Q 025685 64 CEHAYCATCILRWASY-----------VRNPTCPQCKHPFEF 94 (249)
Q Consensus 64 CgH~FC~~CI~~w~~~-----------~~~~~CP~CR~~~~~ 94 (249)
|...+|.+|+.+|+.. .++.+||+||+.|.-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 4567899999999863 245689999999874
No 105
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=87.70 E-value=0.36 Score=43.91 Aligned_cols=45 Identities=20% Similarity=0.534 Sum_probs=29.4
Q ss_pred ccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
..|--|--.| ..-..++||.|.||..|-.. . ..+.||.|-..+..
T Consensus 91 HfCd~Cd~PI--~IYGRmIPCkHvFCl~CAr~--~--~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 91 HFCDRCDFPI--AIYGRMIPCKHVFCLECARS--D--SDKICPLCDDRVQR 135 (389)
T ss_pred EeecccCCcc--eeeecccccchhhhhhhhhc--C--ccccCcCcccHHHH
Confidence 4466665542 11223579999999999642 2 35689999776654
No 106
>PLN02189 cellulose synthase
Probab=87.61 E-value=0.58 Score=48.93 Aligned_cols=52 Identities=29% Similarity=0.662 Sum_probs=35.5
Q ss_pred CCcccccccccCccCC---Cce-EecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 41 NHGGVCAICLDKTVLQ---ETA-LVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~---~pv-~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
.....|.||-+.+... ++. ..-.|+--.|..|.. +-...++..||.|+....
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cye-yer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYE-YERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhcCCccCcccCCchh
Confidence 3456899999986322 221 123477778999984 444457899999988764
No 107
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=86.01 E-value=0.88 Score=47.80 Aligned_cols=52 Identities=31% Similarity=0.692 Sum_probs=36.0
Q ss_pred CCcccccccccCccCC---Cc-eEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 41 NHGGVCAICLDKTVLQ---ET-ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~---~p-v~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
.....|.||-+.+... ++ |..-.|+--.|..|. .+-...++..||+|+....
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchh
Confidence 3556899999986332 22 122456777899998 4555458899999988754
No 108
>PLN02400 cellulose synthase
Probab=85.62 E-value=0.72 Score=48.46 Aligned_cols=52 Identities=25% Similarity=0.679 Sum_probs=36.0
Q ss_pred CCcccccccccCccCC---Cc-eEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 41 NHGGVCAICLDKTVLQ---ET-ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~---~p-v~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
.....|.||-+.+... ++ |..-.|+--.|..|. .+-...++..||+|+....
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCY-EYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCY-EYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCCCccccchh-heecccCCccCcccCCccc
Confidence 3556899999986322 22 223456777899998 4544457889999988764
No 109
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=85.47 E-value=0.54 Score=42.84 Aligned_cols=50 Identities=12% Similarity=0.268 Sum_probs=37.2
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcC-CCCCCCCCcc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYV-RNPTCPQCKH 90 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~-~~~~CP~CR~ 90 (249)
-.-+.||+=.+.-...+|..++.|||..-..-+......+ ..+.||.|-.
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred cceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 3568899866653345777789999999999988877642 3578999944
No 110
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.54 E-value=0.7 Score=40.96 Aligned_cols=54 Identities=22% Similarity=0.575 Sum_probs=37.7
Q ss_pred CCCCcccccccccCccCCCce---EecCC-----CCcccHHHHHHHHhcC------CCCCCCCCcccCcc
Q 025685 39 FGNHGGVCAICLDKTVLQETA---LVKGC-----EHAYCATCILRWASYV------RNPTCPQCKHPFEF 94 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv---~~l~C-----gH~FC~~CI~~w~~~~------~~~~CP~CR~~~~~ 94 (249)
....+-.|-||+.. ..+.. -+-|| .|..|..|+.+|...+ +...||+|+.....
T Consensus 16 ~~e~eR~CWiCF~T--deDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 16 NQELERCCWICFAT--DEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred ccccceeEEEEecc--CcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 34456779999987 44322 23466 4778999999999843 23589999876544
No 111
>PLN02436 cellulose synthase A
Probab=83.63 E-value=1.5 Score=46.18 Aligned_cols=52 Identities=31% Similarity=0.686 Sum_probs=35.3
Q ss_pred CCcccccccccCccCC---Cce-EecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 41 NHGGVCAICLDKTVLQ---ETA-LVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~---~pv-~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
.....|.||-+.+... ++. ..-.|+--.|..|.. +-...++..||.|+....
T Consensus 34 ~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cye-yer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 34 LSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYE-YERREGNQACPQCKTRYK 89 (1094)
T ss_pred cCCccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhcCCccCcccCCchh
Confidence 3456899999986322 221 123466678999984 444457889999988764
No 112
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=83.15 E-value=0.34 Score=49.00 Aligned_cols=53 Identities=8% Similarity=0.193 Sum_probs=32.8
Q ss_pred CcccccccccCccC-CCceEec---CCCCcccHHHHHHHHhc----CCCCCCCCCcccCcc
Q 025685 42 HGGVCAICLDKTVL-QETALVK---GCEHAYCATCILRWASY----VRNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~~~~~-~~pv~~l---~CgH~FC~~CI~~w~~~----~~~~~CP~CR~~~~~ 94 (249)
...+|.||.--+.. .+-.-+. .|+|.||..||..|... .....|+.|...|..
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 34556666655211 1111233 49999999999999873 233467888776655
No 113
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.60 E-value=0.47 Score=39.29 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=24.4
Q ss_pred CCcccccccccCccCCCceEecCCCCcccH
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCA 70 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~ 70 (249)
.+..+|.||++.+...+.+..+||-.+||.
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 456789999999777788888999888774
No 114
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.45 E-value=0.88 Score=43.58 Aligned_cols=37 Identities=22% Similarity=0.656 Sum_probs=29.6
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY 79 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~ 79 (249)
.....|.||.+. ....+..+.|||.||..|+..++..
T Consensus 68 ~~~~~c~ic~~~--~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVES--YDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCC--CcchhhhcCCCcHHHHHHHHHHhhh
Confidence 455889999999 4334557899999999999988773
No 115
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.77 E-value=1.3 Score=39.23 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=31.6
Q ss_pred CCCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHh
Q 025685 38 GFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS 78 (249)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~ 78 (249)
+..-+...|++|+.. ..+|+ +.+=||.||..||..++.
T Consensus 38 DsiK~FdcCsLtLqP--c~dPv-it~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQP--CRDPV-ITPDGYLFDREAILEYIL 75 (303)
T ss_pred cccCCcceeeeeccc--ccCCc-cCCCCeeeeHHHHHHHHH
Confidence 334466789999999 89998 669999999999998765
No 116
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=81.61 E-value=1.5 Score=44.77 Aligned_cols=54 Identities=17% Similarity=0.597 Sum_probs=41.5
Q ss_pred CCCcccccccccCccCCCceEecCCCCc-----ccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCEHA-----YCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~CgH~-----FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
..+...|-||...=...+|. .-||..+ .|.+|+..|+..++...|-+|+.++..
T Consensus 9 N~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred CccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 34568899998753255676 5588653 589999999998788899999988765
No 117
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=81.07 E-value=0.7 Score=30.40 Aligned_cols=42 Identities=29% Similarity=0.732 Sum_probs=23.6
Q ss_pred cccccccCccCCCceEecCCC-CcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 45 VCAICLDKTVLQETALVKGCE-HAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 45 ~C~ICl~~~~~~~pv~~l~Cg-H~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
.|.-|.-. +.. ++.|. |-.|..|+..++. .+..||+|..+++
T Consensus 4 nCKsCWf~----~k~-Li~C~dHYLCl~CLt~ml~--~s~~C~iC~~~LP 46 (50)
T PF03854_consen 4 NCKSCWFA----NKG-LIKCSDHYLCLNCLTLMLS--RSDRCPICGKPLP 46 (50)
T ss_dssp ---SS-S------SS-EEE-SS-EEEHHHHHHT-S--SSSEETTTTEE--
T ss_pred cChhhhhc----CCC-eeeecchhHHHHHHHHHhc--cccCCCcccCcCc
Confidence 35556544 333 33674 7789999998887 5678999998875
No 118
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=80.19 E-value=0.55 Score=34.42 Aligned_cols=29 Identities=17% Similarity=0.160 Sum_probs=0.0
Q ss_pred CCccchhhhhhhcCCCccccccccCCCCCc
Q 025685 145 EDEEDDLDEVYFRSSSSLRIGNRRWGDNGY 174 (249)
Q Consensus 145 ddedde~de~~~~~~~~~~~gnr~~~~~~~ 174 (249)
||++|+++|..|.....-+ -..+++++|.
T Consensus 42 DD~dDdeeee~m~rK~k~r-~rkKrrwlwL 70 (81)
T PF14812_consen 42 DDDDDDEEEEPMPRKGKKR-PRKKRRWLWL 70 (81)
T ss_dssp ------------------------------
T ss_pred ccccchhhccccccccccC-ccccchhHHH
Confidence 3334445666666543223 4444555554
No 119
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=79.17 E-value=2.4 Score=44.48 Aligned_cols=52 Identities=21% Similarity=0.629 Sum_probs=35.9
Q ss_pred CCcccccccccCccCC---Cc-eEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 41 NHGGVCAICLDKTVLQ---ET-ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~---~p-v~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
-....|.||-+.+... +| |..-.|+--.|..|. .+-...++..||.|+....
T Consensus 13 ~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cy-eye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 13 ADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCY-EYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CCcchhhccccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchh
Confidence 3567799999985322 22 122456777999998 4544457889999988764
No 120
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=77.61 E-value=1.7 Score=38.96 Aligned_cols=52 Identities=29% Similarity=0.602 Sum_probs=38.6
Q ss_pred CcccccccccCccCCC--ceEecCCC-----CcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 42 HGGVCAICLDKTVLQE--TALVKGCE-----HAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~--pv~~l~Cg-----H~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
+...|-||........ + ...||. +..|..|+..|...++...|..|...+..
T Consensus 77 ~~~~cRIc~~~~~~~~~~~-l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLL-LISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCCcEEEEecccccccccc-cccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 3578999999732221 3 356775 34589999999998888999999887654
No 121
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.30 E-value=1.3 Score=41.63 Aligned_cols=44 Identities=25% Similarity=0.625 Sum_probs=30.2
Q ss_pred CcccccccccCccCC---CceEecCCCCcccHHHHHHHHhcCCCCCCCCC
Q 025685 42 HGGVCAICLDKTVLQ---ETALVKGCEHAYCATCILRWASYVRNPTCPQC 88 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~---~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~C 88 (249)
....||+|...|.+. +.+... |||.||..|...|.. .+..|..|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~--~~~~~~~~ 351 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKT--HNGECYEC 351 (384)
T ss_pred hcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhh--CCccccCc
Confidence 345688888775322 455444 999999999999987 44445433
No 122
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.29 E-value=1.2 Score=40.09 Aligned_cols=36 Identities=25% Similarity=0.671 Sum_probs=28.0
Q ss_pred CCCcccccccccCccCCCceEecCC----CCcccHHHHHHHHh
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGC----EHAYCATCILRWAS 78 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~C----gH~FC~~CI~~w~~ 78 (249)
.+.-+.|-+|.+. +.+.-++ .| .|.||+.|-....+
T Consensus 265 ~~apLcCTLC~ER--LEDTHFV-QCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 265 PSAPLCCTLCHER--LEDTHFV-QCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred CCCceeehhhhhh--hccCcee-ecCCCcccceecccCHHHHH
Confidence 3456889999999 6776644 66 69999999887665
No 123
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=75.91 E-value=3.5 Score=29.95 Aligned_cols=52 Identities=33% Similarity=0.701 Sum_probs=20.8
Q ss_pred CCcccccccccCccCCC--ceEe--cCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 41 NHGGVCAICLDKTVLQE--TALV--KGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~--pv~~--l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
.....|.||-+.+.+.. -+++ -.|+--.|..|+.==.. .++..||.|+..+.
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErk-eg~q~CpqCkt~yk 62 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERK-EGNQVCPQCKTRYK 62 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHH-TS-SB-TTT--B--
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhh-cCcccccccCCCcc
Confidence 35678999999863321 1222 45777789999864333 47889999987654
No 124
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=75.07 E-value=4.8 Score=30.92 Aligned_cols=49 Identities=22% Similarity=0.592 Sum_probs=31.8
Q ss_pred CcccccccccCccCCCce-Ee------cCC---CCcccHHHHHHHHhc-------CCCCCCCCCcccC
Q 025685 42 HGGVCAICLDKTVLQETA-LV------KGC---EHAYCATCILRWASY-------VRNPTCPQCKHPF 92 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv-~~------l~C---gH~FC~~CI~~w~~~-------~~~~~CP~CR~~~ 92 (249)
.+..|..|... ..+.. .- ..| .-.||..||..+... .....||.||..-
T Consensus 6 ~g~~CHqCrqK--t~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 6 NGKTCHQCRQK--TLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred CCCCchhhcCC--CCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 45678888875 33222 12 455 678999999876542 2457899998843
No 125
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=74.27 E-value=2.6 Score=38.67 Aligned_cols=51 Identities=24% Similarity=0.564 Sum_probs=37.0
Q ss_pred CcccccccccCcc-CCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 42 HGGVCAICLDKTV-LQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~~~~-~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
-.-.|+||.+... ...+..-.+|++..|..|+..... +...||.||.+...
T Consensus 248 v~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~--~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD--GDGRCPGCRKPYER 299 (327)
T ss_pred cCCCCCCCCCcccccccccccccccccchhhhhhcccc--cCCCCCccCCcccc
Confidence 3467999999742 222333348899999999888776 67889999977654
No 126
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=74.04 E-value=1.8 Score=43.78 Aligned_cols=38 Identities=26% Similarity=0.706 Sum_probs=25.8
Q ss_pred ccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCC
Q 025685 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCP 86 (249)
Q Consensus 46 C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP 86 (249)
|.||--.+ -....+...|+|..|.+|...|+.. .-.||
T Consensus 1031 C~~C~l~V-~gss~~Cg~C~Hv~H~sc~~eWf~~--gd~Cp 1068 (1081)
T KOG0309|consen 1031 CAICHLAV-RGSSNFCGTCGHVGHTSCMMEWFRT--GDVCP 1068 (1081)
T ss_pred eeeEeeEe-eccchhhccccccccHHHHHHHHhc--CCcCC
Confidence 55554332 2233345789999999999999995 34687
No 127
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=73.08 E-value=2.1 Score=28.56 Aligned_cols=41 Identities=22% Similarity=0.457 Sum_probs=25.1
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~ 92 (249)
+.+.||.|... +.... ++..|............||+|...+
T Consensus 1 ~~f~CP~C~~~--~~~~~--------L~~H~~~~H~~~~~~v~CPiC~~~~ 41 (54)
T PF05605_consen 1 DSFTCPYCGKG--FSESS--------LVEHCEDEHRSESKNVVCPICSSRV 41 (54)
T ss_pred CCcCCCCCCCc--cCHHH--------HHHHHHhHCcCCCCCccCCCchhhh
Confidence 35789999996 44332 2344555444433467899997643
No 129
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=69.58 E-value=4.6 Score=26.97 Aligned_cols=27 Identities=22% Similarity=0.706 Sum_probs=14.6
Q ss_pred EecCCCCcccHHHHHHHHhcCCCCCCCCC
Q 025685 60 LVKGCEHAYCATCILRWASYVRNPTCPQC 88 (249)
Q Consensus 60 ~~l~CgH~FC~~CI~~w~~~~~~~~CP~C 88 (249)
.-..|++.||.+|= -++. .....||-|
T Consensus 23 ~C~~C~~~FC~dCD-~fiH-E~LH~CPGC 49 (51)
T PF07975_consen 23 RCPKCKNHFCIDCD-VFIH-ETLHNCPGC 49 (51)
T ss_dssp --TTTT--B-HHHH-HTTT-TTS-SSSTT
T ss_pred ECCCCCCccccCcC-hhhh-ccccCCcCC
Confidence 34689999999993 2332 356689988
No 130
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=66.61 E-value=0.5 Score=33.69 Aligned_cols=41 Identities=27% Similarity=0.758 Sum_probs=22.6
Q ss_pred ccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
..||.|...+ . +. . +|.+|..|-..+.. ...||.|..++..
T Consensus 2 ~~CP~C~~~L--~-~~---~-~~~~C~~C~~~~~~---~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 2 NTCPKCQQEL--E-WQ---G-GHYHCEACQKDYKK---EAFCPDCGQPLEV 42 (70)
T ss_dssp -B-SSS-SBE--E-EE---T-TEEEETTT--EEEE---EEE-TTT-SB-EE
T ss_pred CcCCCCCCcc--E-Ee---C-CEEECcccccccee---cccCCCcccHHHH
Confidence 5799999883 2 11 2 78889999765443 4579999988764
No 131
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=66.38 E-value=3.1 Score=35.94 Aligned_cols=48 Identities=21% Similarity=0.530 Sum_probs=36.4
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
+--.|.+|..+ .-.-+..-.|+-.|+..|+..++. ....||.|..-++
T Consensus 180 nlk~Cn~Ch~L--vIqg~rCg~c~i~~h~~c~qty~q--~~~~cphc~d~w~ 227 (235)
T KOG4718|consen 180 NLKNCNLCHCL--VIQGIRCGSCNIQYHRGCIQTYLQ--RRDICPHCGDLWT 227 (235)
T ss_pred HHHHHhHhHHH--hheeeccCcccchhhhHHHHHHhc--ccCcCCchhcccC
Confidence 44579999998 444444567888899999999997 4778999955443
No 132
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=64.95 E-value=4.1 Score=23.30 Aligned_cols=8 Identities=25% Similarity=0.713 Sum_probs=4.7
Q ss_pred cccccccC
Q 025685 45 VCAICLDK 52 (249)
Q Consensus 45 ~C~ICl~~ 52 (249)
.||-|...
T Consensus 2 ~CP~C~~~ 9 (26)
T PF10571_consen 2 TCPECGAE 9 (26)
T ss_pred cCCCCcCC
Confidence 36666665
No 133
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=64.86 E-value=9.9 Score=25.91 Aligned_cols=45 Identities=22% Similarity=0.517 Sum_probs=28.5
Q ss_pred cccccccCccCCC-ceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 45 VCAICLDKTVLQE-TALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 45 ~C~ICl~~~~~~~-pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
.|-.|-..+.... .+.+-+=..+||..|....+. ..||.|...+.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~----~~CPNCgGelv 52 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLN----GVCPNCGGELV 52 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc----CcCcCCCCccc
Confidence 4777777653333 222212234799999988764 45999988764
No 134
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=63.66 E-value=2.8 Score=41.51 Aligned_cols=44 Identities=25% Similarity=0.760 Sum_probs=28.4
Q ss_pred CCCcccccccccC---ccC--CCceEecCCCCcccHHHHHHHHhcCCCCCCCCC
Q 025685 40 GNHGGVCAICLDK---TVL--QETALVKGCEHAYCATCILRWASYVRNPTCPQC 88 (249)
Q Consensus 40 ~~~~~~C~ICl~~---~~~--~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~C 88 (249)
...++.|.||... |.+ ........|++.||..|+.+ ....||.|
T Consensus 508 ~~~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r-----~s~~CPrC 556 (580)
T KOG1829|consen 508 TGKGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR-----KSPCCPRC 556 (580)
T ss_pred ccCeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc-----cCCCCCch
Confidence 3456778888542 222 12233468999999999754 34449999
No 135
>PLN02195 cellulose synthase A
Probab=63.30 E-value=8.7 Score=40.27 Aligned_cols=51 Identities=20% Similarity=0.613 Sum_probs=35.9
Q ss_pred CCcccccccccCccCC---Cc-eEecCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 025685 41 NHGGVCAICLDKTVLQ---ET-ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~---~p-v~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~ 92 (249)
+....|.||-+.+... +| |..-.|+--.|..|. .+-...++..||+|+...
T Consensus 4 ~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer~eg~q~CpqCkt~Y 58 (977)
T PLN02195 4 SGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEIKEGRKVCLRCGGPY 58 (977)
T ss_pred CCCccceecccccCcCCCCCeEEEeccCCCccccchh-hhhhhcCCccCCccCCcc
Confidence 3456799999975322 32 223467888999998 555555889999998865
No 136
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.60 E-value=6.1 Score=28.35 Aligned_cols=45 Identities=22% Similarity=0.463 Sum_probs=27.2
Q ss_pred ccccccCccCC-CceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 46 CAICLDKTVLQ-ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 46 C~ICl~~~~~~-~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
|--|-..+... ....+-.=.|+||..|...-+. ..||.|...+..
T Consensus 8 CECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~----g~CPnCGGelv~ 53 (84)
T COG3813 8 CECCDRDLPPDSTDARICTFECTFCADCAENRLH----GLCPNCGGELVA 53 (84)
T ss_pred CcccCCCCCCCCCceeEEEEeeehhHhHHHHhhc----CcCCCCCchhhc
Confidence 55555554222 1222323357899999876554 459999887754
No 137
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.41 E-value=2.5 Score=38.33 Aligned_cols=52 Identities=27% Similarity=0.676 Sum_probs=40.3
Q ss_pred CCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.-++...|.||... +.-|...-.|+|.||..|...|.. -...||.|+.....
T Consensus 101 ~~~~~~~~~~~~g~--l~vpt~~qg~w~qf~~~~p~~~~~--~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 101 FQQDHDICYICYGK--LTVPTRIQGCWHQFCYVCPKSNFA--MGNDCPDCRGKISP 152 (324)
T ss_pred ccCCccceeeeeee--EEecccccCceeeeeecCCchhhh--hhhccchhhcCcCc
Confidence 34567789999998 666666678999999999999987 35568888776544
No 138
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.50 E-value=1.4 Score=39.51 Aligned_cols=47 Identities=23% Similarity=0.410 Sum_probs=34.8
Q ss_pred cccccccccCccC----CCceEecC--------CCCcccHHHHHHHHhcCCCCCCCCCccc
Q 025685 43 GGVCAICLDKTVL----QETALVKG--------CEHAYCATCILRWASYVRNPTCPQCKHP 91 (249)
Q Consensus 43 ~~~C~ICl~~~~~----~~pv~~l~--------CgH~FC~~CI~~w~~~~~~~~CP~CR~~ 91 (249)
...|.||...+.. ..|. ++. |||+.|..|+...+.... ..||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~-vl~~~~~~~~~c~htlc~~c~~~~l~~~~-~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPL-VLSLSRLKEKIEGHTLCKECIDTILLQAG-IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchh-HHHHHHHHHHHHHHHHHhcchHHHHHHhh-hcCCcccce
Confidence 3569999988631 1233 456 999999999999876533 889999864
No 139
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=59.28 E-value=6.1 Score=36.31 Aligned_cols=38 Identities=24% Similarity=0.553 Sum_probs=30.9
Q ss_pred CCCCCcccccccccCccCCCceEecCCC--CcccHHHHHHHHh
Q 025685 38 GFGNHGGVCAICLDKTVLQETALVKGCE--HAYCATCILRWAS 78 (249)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~pv~~l~Cg--H~FC~~CI~~w~~ 78 (249)
........|..|.+. .+|+++++|. |..|..|+..+..
T Consensus 216 ~~N~~ni~C~~Ctdv---~~~vlvf~Cns~HvtC~dCFr~yc~ 255 (446)
T KOG0006|consen 216 ATNSRNITCITCTDV---RSPVLVFQCNSRHVTCLDCFRLYCV 255 (446)
T ss_pred hcccccceeEEecCC---ccceEEEecCCceeehHHhhhhHhh
Confidence 344566789999997 7899999999 9999999986544
No 140
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.11 E-value=6.9 Score=39.41 Aligned_cols=46 Identities=33% Similarity=0.719 Sum_probs=33.4
Q ss_pred cccccccCccCCCceEecCCCC-cccHHHHHHHHhcCC----CCCCCCCcccCc
Q 025685 45 VCAICLDKTVLQETALVKGCEH-AYCATCILRWASYVR----NPTCPQCKHPFE 93 (249)
Q Consensus 45 ~C~ICl~~~~~~~pv~~l~CgH-~FC~~CI~~w~~~~~----~~~CP~CR~~~~ 93 (249)
.|+||-.- ..-+. .-.||| ..|..|..+...... ...||+|+..+.
T Consensus 2 ~c~ic~~s--~~~~~-~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFS--PDFVG-RGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecC--ccccc-cccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 49999988 33333 569999 899999998655323 457899988543
No 141
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=57.45 E-value=10 Score=32.43 Aligned_cols=42 Identities=26% Similarity=0.725 Sum_probs=28.8
Q ss_pred CCcccccccccC---ccCC--CceEecCCCCcccHHHHHHHHhcCCCCCCCCCc
Q 025685 41 NHGGVCAICLDK---TVLQ--ETALVKGCEHAYCATCILRWASYVRNPTCPQCK 89 (249)
Q Consensus 41 ~~~~~C~ICl~~---~~~~--~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR 89 (249)
..++.|-||.+. |++. ..+.-..|+-.||..|+. ...||.|-
T Consensus 150 ~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-------~~~CpkC~ 196 (202)
T PF13901_consen 150 QKGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-------KKSCPKCA 196 (202)
T ss_pred hCCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-------CCCCCCcH
Confidence 357889999852 2222 334457899999999974 24599994
No 142
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=55.37 E-value=2.3 Score=38.26 Aligned_cols=49 Identities=24% Similarity=0.502 Sum_probs=22.5
Q ss_pred CCCcccccccccCccCCCceEecC----CCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 025685 40 GNHGGVCAICLDKTVLQETALVKG----CEHAYCATCILRWASYVRNPTCPQCKHPF 92 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~----CgH~FC~~CI~~w~~~~~~~~CP~CR~~~ 92 (249)
......||||-.. ..-.+.... --|.+|..|-..|-. ....||.|-..-
T Consensus 169 ~w~~g~CPvCGs~--P~~s~l~~~~~~G~R~L~Cs~C~t~W~~--~R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 169 GWQRGYCPVCGSP--PVLSVLRGGEREGKRYLHCSLCGTEWRF--VRIKCPYCGNTD 221 (290)
T ss_dssp -TT-SS-TTT-----EEEEEEE------EEEEEETTT--EEE----TTS-TTT---S
T ss_pred CccCCcCCCCCCc--CceEEEecCCCCccEEEEcCCCCCeeee--cCCCCcCCCCCC
Confidence 4456799999987 332222221 246789999999976 567899996653
No 143
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.47 E-value=0.8 Score=42.87 Aligned_cols=49 Identities=18% Similarity=0.466 Sum_probs=37.5
Q ss_pred ccccccccCccCC-CceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 44 GVCAICLDKTVLQ-ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 44 ~~C~ICl~~~~~~-~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
..|+||...|+.. +.+.-+.|||.++..||..|+.. ...||.|+..+..
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~--~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT--KRKLPSCRRELPK 246 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH--HHHhHHHHhhhhh
Confidence 4599999875321 23334689999999999999983 5679999988765
No 144
>PF09322 DUF1979: Domain of unknown function (DUF1979); InterPro: IPR015401 This N-terminal domain is functionally uncharacterised and found in various Oryza sativa (Rice) mutator-like transposases.
Probab=52.90 E-value=6.5 Score=26.46 Aligned_cols=25 Identities=36% Similarity=0.666 Sum_probs=19.5
Q ss_pred cccccCCCCC-----ccccCccccccCCCC
Q 025685 164 IGNRRWGDNG-----YVRAGRQEARPVCRP 188 (249)
Q Consensus 164 ~gnr~~~~~~-----~~~~~~~~a~~~~~~ 188 (249)
-||-|||+.| |+...|..+||..++
T Consensus 13 ~GNvR~Gp~GvdLs~Fi~~~rGIdrpAERs 42 (58)
T PF09322_consen 13 EGNVRYGPTGVDLSEFIVTSRGIDRPAERS 42 (58)
T ss_pred CCceeECCCccchhHeeeeccccCchhhhc
Confidence 5788888776 677888888888765
No 145
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=52.86 E-value=9.2 Score=34.17 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=19.2
Q ss_pred cCCCCcccHHHHHHH-Hh--cCCCCCCCCCcccCcc
Q 025685 62 KGCEHAYCATCILRW-AS--YVRNPTCPQCKHPFEF 94 (249)
Q Consensus 62 l~CgH~FC~~CI~~w-~~--~~~~~~CP~CR~~~~~ 94 (249)
|.|.--||-.=+.+- +. ......||.|......
T Consensus 186 LRCK~cfCddHvrrKg~ky~k~k~~PCPKCg~et~e 221 (314)
T PF06524_consen 186 LRCKICFCDDHVRRKGFKYEKGKPIPCPKCGYETQE 221 (314)
T ss_pred hheeeeehhhhhhhcccccccCCCCCCCCCCCcccc
Confidence 455555665555441 11 1245789999887654
No 146
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=51.40 E-value=20 Score=24.24 Aligned_cols=33 Identities=21% Similarity=0.463 Sum_probs=25.2
Q ss_pred CcccccccccCccCCC-ceEecCCCCcccHHHHH
Q 025685 42 HGGVCAICLDKTVLQE-TALVKGCEHAYCATCIL 74 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~-pv~~l~CgH~FC~~CI~ 74 (249)
....|++|-+.|...+ -|+-..||-.||..|..
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 4567999999975354 44457899999999964
No 147
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=50.40 E-value=8.9 Score=34.11 Aligned_cols=48 Identities=17% Similarity=0.238 Sum_probs=37.1
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCccc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHP 91 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~ 91 (249)
-...|||=+.. ..+|++...|||.|=.+-|..++.......||+-...
T Consensus 175 fs~rdPis~~~--I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKP--IVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhh--hhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 34679987777 5789988999999999999988874345678865444
No 148
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=50.36 E-value=13 Score=37.35 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=34.3
Q ss_pred CCCcccccccccCccCCCceEecCCCCcccHHHHHHHHh----cCCCCCCCCCcccCcc
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS----YVRNPTCPQCKHPFEF 94 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~----~~~~~~CP~CR~~~~~ 94 (249)
..-.+.|+|+.-. +.-|..-..|.|.-|++-. |+. ......||+|...+..
T Consensus 303 ~~vSL~CPl~~~R--m~~P~r~~~CkHlQcFD~~--~~lq~n~~~pTW~CPVC~~~~~~ 357 (636)
T KOG2169|consen 303 LRVSLNCPLSKMR--MSLPARGHTCKHLQCFDAL--SYLQMNEQKPTWRCPVCQKAAPF 357 (636)
T ss_pred ceeEecCCcccce--eecCCcccccccceecchh--hhHHhccCCCeeeCccCCccccc
Confidence 3446789999888 5556666678887776643 333 2345789999876643
No 149
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=49.64 E-value=4.6 Score=38.04 Aligned_cols=36 Identities=22% Similarity=0.575 Sum_probs=25.5
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHh
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS 78 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~ 78 (249)
-...|+||+-++....- .+.-|.-..|..|+.++..
T Consensus 73 r~~ecpicflyyps~~n-~~rcC~~~Ic~ecf~~~~~ 108 (482)
T KOG2789|consen 73 RKTECPICFLYYPSAKN-LVRCCSETICGECFAPFGC 108 (482)
T ss_pred ccccCceeeeecccccc-hhhhhccchhhhheecccC
Confidence 34689999998532122 2557999999999977544
No 150
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.94 E-value=37 Score=30.30 Aligned_cols=50 Identities=8% Similarity=0.226 Sum_probs=34.4
Q ss_pred CCcccccccccCccCC-CceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 41 NHGGVCAICLDKTVLQ-ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~-~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
...+.|||---.++-. .=..+.+|||.|-..-+...- ...|++|...+..
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik----as~C~~C~a~y~~ 159 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK----ASVCHVCGAAYQE 159 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh----hccccccCCcccc
Confidence 4568899866552111 112356999999988877654 4569999998876
No 151
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=48.93 E-value=20 Score=33.00 Aligned_cols=55 Identities=20% Similarity=0.478 Sum_probs=30.7
Q ss_pred CCCCcccccccccCcc-----CC-Cc----------eEecCCCCcccHHHHHHHHhcC-------CCCCCCCCcccCc
Q 025685 39 FGNHGGVCAICLDKTV-----LQ-ET----------ALVKGCEHAYCATCILRWASYV-------RNPTCPQCKHPFE 93 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~-----~~-~p----------v~~l~CgH~FC~~CI~~w~~~~-------~~~~CP~CR~~~~ 93 (249)
.+.....||+|+..-. +. +| ..+-||||..-..=..=|.... -...||.|-..+.
T Consensus 337 ~g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 337 TGQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred cCcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 3445678999987510 00 11 1135899964444344466521 1357999977664
No 152
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=48.70 E-value=11 Score=26.64 Aligned_cols=12 Identities=25% Similarity=1.212 Sum_probs=9.0
Q ss_pred cccHHHHHHHHh
Q 025685 67 AYCATCILRWAS 78 (249)
Q Consensus 67 ~FC~~CI~~w~~ 78 (249)
.||..|+..|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999987
No 153
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.67 E-value=6.9 Score=39.92 Aligned_cols=37 Identities=19% Similarity=0.522 Sum_probs=27.3
Q ss_pred CcccccccccCccCC----CceEecCCCCcccHHHHHHHHh
Q 025685 42 HGGVCAICLDKTVLQ----ETALVKGCEHAYCATCILRWAS 78 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~----~pv~~l~CgH~FC~~CI~~w~~ 78 (249)
....|..|++.+-.. +.+.++.|||.||..|+.-...
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~ 823 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESL 823 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHH
Confidence 344799999985211 4566789999999999976554
No 154
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=47.09 E-value=4.7 Score=27.04 Aligned_cols=35 Identities=17% Similarity=0.527 Sum_probs=21.9
Q ss_pred ccccc--ccccCccC----CC-ceEecCCCCcccHHHHHHHH
Q 025685 43 GGVCA--ICLDKTVL----QE-TALVKGCEHAYCATCILRWA 77 (249)
Q Consensus 43 ~~~C~--ICl~~~~~----~~-pv~~l~CgH~FC~~CI~~w~ 77 (249)
..-|| -|...+.. .. .+.-..|+|.||..|...|-
T Consensus 18 ~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~H 59 (64)
T smart00647 18 LKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWH 59 (64)
T ss_pred ccCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcCC
Confidence 34577 67655422 22 23233789999999987774
No 155
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=47.07 E-value=7.6 Score=26.83 Aligned_cols=35 Identities=23% Similarity=0.528 Sum_probs=17.6
Q ss_pred CcccccccccCccCC-CceEecCCCCcccHHHHHHH
Q 025685 42 HGGVCAICLDKTVLQ-ETALVKGCEHAYCATCILRW 76 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~-~pv~~l~CgH~FC~~CI~~w 76 (249)
+...|.+|...|.+. ...--..||+.||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 456799999996443 22334689999999997543
No 156
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=44.05 E-value=20 Score=36.65 Aligned_cols=40 Identities=15% Similarity=0.375 Sum_probs=28.0
Q ss_pred cccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCC
Q 025685 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQ 87 (249)
Q Consensus 45 ~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~ 87 (249)
.|.+|-..+ ...-+-.-.|||.-|.+|+..|+. ....||.
T Consensus 781 ~CtVC~~vi-~G~~~~c~~C~H~gH~sh~~sw~~--~~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVI-RGVDVWCQVCGHGGHDSHLKSWFF--KASPCAK 820 (839)
T ss_pred Cceeeccee-eeeEeecccccccccHHHHHHHHh--cCCCCcc
Confidence 477777664 222233458999999999999998 4555665
No 157
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.51 E-value=8.9 Score=30.91 Aligned_cols=28 Identities=29% Similarity=0.749 Sum_probs=18.5
Q ss_pred CCCCcccccccccCccCCCceEecCCCCcccHHHH
Q 025685 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCI 73 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI 73 (249)
...++.+|.||+.. - +--.|||. |..|-
T Consensus 61 Gv~ddatC~IC~KT--K----FADG~GH~-C~YCq 88 (169)
T KOG3799|consen 61 GVGDDATCGICHKT--K----FADGCGHN-CSYCQ 88 (169)
T ss_pred ccCcCcchhhhhhc--c----cccccCcc-cchhh
Confidence 34578899999987 2 13478884 44453
No 158
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=41.88 E-value=17 Score=32.00 Aligned_cols=25 Identities=20% Similarity=0.481 Sum_probs=17.3
Q ss_pred ccccccccCccCCCceEecCCCCcc
Q 025685 44 GVCAICLDKTVLQETALVKGCEHAY 68 (249)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~l~CgH~F 68 (249)
+.||+|...+........-+.+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 7899999996444443345667877
No 160
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=41.42 E-value=18 Score=28.03 Aligned_cols=48 Identities=19% Similarity=0.366 Sum_probs=29.6
Q ss_pred CcccccccccCccCC--CceEecCCCCcccHHHHHHHHhcCCCCCCCCCcc
Q 025685 42 HGGVCAICLDKTVLQ--ETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~--~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~ 90 (249)
....|.+|...|.+- .......|.|.+|..|-.. ........|.+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 456899998865322 3455689999999999543 21123446877754
No 161
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=40.58 E-value=11 Score=28.83 Aligned_cols=40 Identities=15% Similarity=0.334 Sum_probs=23.3
Q ss_pred CCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
....|.|+.|... - .|.|+ .......+...|-+|-..|..
T Consensus 20 ldt~FnClfcnHe--k-------~v~~~------~Dk~~~iG~~sC~iC~esFqt 59 (109)
T KOG3214|consen 20 LDTQFNCLFCNHE--K-------SVSCT------LDKKHNIGKASCRICEESFQT 59 (109)
T ss_pred hheeeccCccccc--c-------ceeee------ehhhcCcceeeeeehhhhhcc
Confidence 3456779988877 2 12221 111222366789999888765
No 162
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=39.97 E-value=22 Score=23.35 Aligned_cols=35 Identities=17% Similarity=0.470 Sum_probs=23.5
Q ss_pred ccccccccCccCC-CceEecCCCCcccHHHHHHHHh
Q 025685 44 GVCAICLDKTVLQ-ETALVKGCEHAYCATCILRWAS 78 (249)
Q Consensus 44 ~~C~ICl~~~~~~-~pv~~l~CgH~FC~~CI~~w~~ 78 (249)
..|.+|...|.+. ....-..||+.||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 4588888765322 2223468999999999865443
No 163
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=38.75 E-value=25 Score=32.49 Aligned_cols=44 Identities=20% Similarity=0.654 Sum_probs=27.7
Q ss_pred cccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcc
Q 025685 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90 (249)
Q Consensus 45 ~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~ 90 (249)
.|-.|.+.......+....|.|.||.+|=. +... .-..||-|..
T Consensus 332 ~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv-~iHe-sLh~CpgCeh 375 (378)
T KOG2807|consen 332 FCFACQGELLSSGRYRCESCKNVFCLDCDV-FIHE-SLHNCPGCEH 375 (378)
T ss_pred ceeeeccccCCCCcEEchhccceeeccchH-HHHh-hhhcCCCcCC
Confidence 388886654233445556888999999943 3321 4456888853
No 164
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=37.95 E-value=9.6 Score=39.19 Aligned_cols=34 Identities=21% Similarity=0.524 Sum_probs=26.1
Q ss_pred CcccccccccCccCCC-ceEecCCCCcccHHHHHHHH
Q 025685 42 HGGVCAICLDKTVLQE-TALVKGCEHAYCATCILRWA 77 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~-pv~~l~CgH~FC~~CI~~w~ 77 (249)
....|..|... ..+ .-+...|++.||..|+..|.
T Consensus 228 ~~~mC~~C~~t--lfn~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 228 IREMCDRCETT--LFNIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred cchhhhhhccc--ccceeEEccccCCeeeecchhhcc
Confidence 34568899887 443 44467899999999999995
No 165
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=37.67 E-value=40 Score=32.35 Aligned_cols=14 Identities=14% Similarity=0.375 Sum_probs=8.4
Q ss_pred CcccHH--HHHHHHhc
Q 025685 66 HAYCAT--CILRWASY 79 (249)
Q Consensus 66 H~FC~~--CI~~w~~~ 79 (249)
|-|..+ +...|+..
T Consensus 3 HEFaSs~~e~ddWi~~ 18 (458)
T PF10446_consen 3 HEFASSEPEEDDWIRQ 18 (458)
T ss_pred cccccCccchhhhhhc
Confidence 556554 45568873
No 166
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=37.55 E-value=13 Score=34.03 Aligned_cols=47 Identities=19% Similarity=0.543 Sum_probs=31.6
Q ss_pred CCCcccccccccCccCCCceEec----CCCCcccHHHHHHHHhcCCCCCCCCCcc
Q 025685 40 GNHGGVCAICLDKTVLQETALVK----GCEHAYCATCILRWASYVRNPTCPQCKH 90 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l----~CgH~FC~~CI~~w~~~~~~~~CP~CR~ 90 (249)
......||||-.. ..-.+..+ .=-|.+|..|-..|-. ....||.|..
T Consensus 184 ~~~~~~CPvCGs~--P~~s~v~~~~~~G~RyL~CslC~teW~~--~R~~C~~Cg~ 234 (309)
T PRK03564 184 GEQRQFCPVCGSM--PVSSVVQIGTTQGLRYLHCNLCESEWHV--VRVKCSNCEQ 234 (309)
T ss_pred ccCCCCCCCCCCc--chhheeeccCCCCceEEEcCCCCCcccc--cCccCCCCCC
Confidence 3456889999987 32222111 1235678999999987 5778999975
No 167
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=37.17 E-value=12 Score=34.12 Aligned_cols=47 Identities=15% Similarity=0.463 Sum_probs=31.2
Q ss_pred CCcccccccccCccCCCceEec---CCC--CcccHHHHHHHHhcCCCCCCCCCccc
Q 025685 41 NHGGVCAICLDKTVLQETALVK---GCE--HAYCATCILRWASYVRNPTCPQCKHP 91 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l---~Cg--H~FC~~CI~~w~~~~~~~~CP~CR~~ 91 (249)
.....||||-.. ..-.+... .=| +.+|..|-..|-. ....||.|...
T Consensus 182 ~~~~~CPvCGs~--P~~s~~~~~~~~~G~RyL~CslC~teW~~--~R~~C~~Cg~~ 233 (305)
T TIGR01562 182 ESRTLCPACGSP--PVASMVRQGGKETGLRYLSCSLCATEWHY--VRVKCSHCEES 233 (305)
T ss_pred CCCCcCCCCCCh--hhhhhhcccCCCCCceEEEcCCCCCcccc--cCccCCCCCCC
Confidence 345689999987 32221111 122 5678899999987 57789999764
No 168
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=35.17 E-value=25 Score=22.54 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=28.7
Q ss_pred cccccccCccCCCceEecCCCCcccHHHHHHHHh----cCCCCCCCCCc
Q 025685 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWAS----YVRNPTCPQCK 89 (249)
Q Consensus 45 ~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~----~~~~~~CP~CR 89 (249)
.|.||........-+.--.|+..||..|+..-.. ......||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 3888888522233444467889999999865322 12367788774
No 169
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=35.15 E-value=34 Score=31.47 Aligned_cols=49 Identities=16% Similarity=-0.041 Sum_probs=35.0
Q ss_pred CCCCCcccccccccCccCCCceEecCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 38 GFGNHGGVCAICLDKTVLQETALVKGCEHA-YCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~-FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
+.....+.|-.|-.- +-..+ ..+|+|+ ||.+|-. + +...+||.|-....
T Consensus 338 ~~~~s~~~~~~~~~~--~~st~-~~~~~~n~~~~~~a~--~--s~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 338 NGLMSSLKGTSAGFG--LLSTI-WSGGNMNLSPGSLAS--A--SASPTSSTCDHNDH 387 (394)
T ss_pred ccchhhcccccccCc--eeeeE-eecCCcccChhhhhh--c--ccCCccccccccce
Confidence 455567888888876 44444 6799995 8999875 2 25678999976543
No 170
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=34.85 E-value=1e+02 Score=23.52 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHhhHHH
Q 025685 219 LKREAADKAAASK----HQQHLARLGRNLE 244 (249)
Q Consensus 219 ~~~~~~~~~~~~k----~~~~~~~~~~~~~ 244 (249)
+..++++|+.-.+ |+++|.+|...|+
T Consensus 71 kEqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 71 KEQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445555665566 7888887776654
No 171
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=34.06 E-value=13 Score=35.02 Aligned_cols=51 Identities=20% Similarity=0.572 Sum_probs=0.0
Q ss_pred cccccccccCcc-----CC-Cc----------eEecCCCCcccHHHHHHHHhcC---C----CCCCCCCcccCc
Q 025685 43 GGVCAICLDKTV-----LQ-ET----------ALVKGCEHAYCATCILRWASYV---R----NPTCPQCKHPFE 93 (249)
Q Consensus 43 ~~~C~ICl~~~~-----~~-~p----------v~~l~CgH~FC~~CI~~w~~~~---~----~~~CP~CR~~~~ 93 (249)
.-+||+|+..-. +. +| ..+-||||..-.....-|.... + ...||.|-.++.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 678999996411 00 11 1235999976666666676621 1 247999987765
No 172
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=33.96 E-value=7 Score=21.57 Aligned_cols=9 Identities=33% Similarity=0.992 Sum_probs=4.3
Q ss_pred CCCCCCCcc
Q 025685 82 NPTCPQCKH 90 (249)
Q Consensus 82 ~~~CP~CR~ 90 (249)
...||.|..
T Consensus 13 ~~fC~~CG~ 21 (23)
T PF13240_consen 13 AKFCPNCGT 21 (23)
T ss_pred CcchhhhCC
Confidence 344555544
No 173
>PRK04023 DNA polymerase II large subunit; Validated
Probab=33.94 E-value=37 Score=35.99 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=30.7
Q ss_pred CCcccccccccCccCCCceEecCCCC-----cccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEH-----AYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH-----~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.....|+-|-.. .... ....||. .||..|- +.. ....||.|......
T Consensus 624 Vg~RfCpsCG~~--t~~f-rCP~CG~~Te~i~fCP~CG--~~~--~~y~CPKCG~El~~ 675 (1121)
T PRK04023 624 IGRRKCPSCGKE--TFYR-RCPFCGTHTEPVYRCPRCG--IEV--EEDECEKCGREPTP 675 (1121)
T ss_pred ccCccCCCCCCc--CCcc-cCCCCCCCCCcceeCcccc--CcC--CCCcCCCCCCCCCc
Confidence 345679999887 3221 2446884 5999992 222 34679999887765
No 174
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.68 E-value=22 Score=28.53 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=14.8
Q ss_pred ccccCccCCCceEecCCCCcccHH
Q 025685 48 ICLDKTVLQETALVKGCEHAYCAT 71 (249)
Q Consensus 48 ICl~~~~~~~pv~~l~CgH~FC~~ 71 (249)
||.+. ...++.-.|||.||..
T Consensus 62 i~qs~---~~rv~rcecghsf~d~ 82 (165)
T COG4647 62 ICQSA---QKRVIRCECGHSFGDY 82 (165)
T ss_pred EEecc---cccEEEEeccccccCh
Confidence 56665 3346667999999964
No 175
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=33.01 E-value=31 Score=30.25 Aligned_cols=25 Identities=28% Similarity=0.666 Sum_probs=19.6
Q ss_pred ccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 68 YCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 68 FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
-|.+|-...-. ....||+|+....+
T Consensus 196 ~C~sC~qqIHR--NAPiCPlCK~KsRS 220 (230)
T PF10146_consen 196 TCQSCHQQIHR--NAPICPLCKAKSRS 220 (230)
T ss_pred hhHhHHHHHhc--CCCCCccccccccc
Confidence 48899877766 57889999887654
No 176
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=31.02 E-value=31 Score=25.82 Aligned_cols=38 Identities=26% Similarity=0.628 Sum_probs=27.7
Q ss_pred cccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.-.|-||... + -.=||.||..|-. ....|.+|...+..
T Consensus 44 ~~~C~~CK~~--v------~q~g~~YCq~CAY------kkGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTK--V------HQPGAKYCQTCAY------KKGICAMCGKKILD 81 (90)
T ss_pred Cccccccccc--c------ccCCCccChhhhc------ccCcccccCCeecc
Confidence 4579999988 2 2447889999942 34569999888743
No 177
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=30.70 E-value=23 Score=31.18 Aligned_cols=12 Identities=42% Similarity=1.079 Sum_probs=8.2
Q ss_pred CCCCCCCcccCc
Q 025685 82 NPTCPQCKHPFE 93 (249)
Q Consensus 82 ~~~CP~CR~~~~ 93 (249)
...||.|...|.
T Consensus 274 ~~~C~~C~skF~ 285 (296)
T COG5242 274 VPVCKKCKSKFS 285 (296)
T ss_pred cCcCcccccccc
Confidence 455888877764
No 178
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=28.90 E-value=18 Score=23.90 Aligned_cols=11 Identities=36% Similarity=1.102 Sum_probs=6.0
Q ss_pred CCCCCcccCcc
Q 025685 84 TCPQCKHPFEF 94 (249)
Q Consensus 84 ~CP~CR~~~~~ 94 (249)
.||+|..+|..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 89999999863
No 179
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=27.27 E-value=24 Score=31.57 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=31.1
Q ss_pred CCCCcccccccccCccCCCceEe--cCCC-CcccHHHHHHHHhcCCCCCCCCCcccC
Q 025685 39 FGNHGGVCAICLDKTVLQETALV--KGCE-HAYCATCILRWASYVRNPTCPQCKHPF 92 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~--l~Cg-H~FC~~CI~~w~~~~~~~~CP~CR~~~ 92 (249)
..++...| ||... .+..-|.. ..|. -.||+.|+.--....+...||.|+...
T Consensus 215 d~~e~~yC-~Cnqv-syg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 215 DPDEPTYC-ICNQV-SYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred CCCCCEEE-Eeccc-ccccccccCCCCCCcceEEEeccccccCCCCcccchhhhhhh
Confidence 34455666 44433 13333322 2477 789999997544445678899998753
No 180
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=26.83 E-value=33 Score=20.93 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=8.0
Q ss_pred ccccccccCccC
Q 025685 44 GVCAICLDKTVL 55 (249)
Q Consensus 44 ~~C~ICl~~~~~ 55 (249)
..|+-|...|..
T Consensus 3 i~Cp~C~~~y~i 14 (36)
T PF13717_consen 3 ITCPNCQAKYEI 14 (36)
T ss_pred EECCCCCCEEeC
Confidence 468888777533
No 181
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=26.64 E-value=8.4 Score=25.71 Aligned_cols=33 Identities=18% Similarity=0.494 Sum_probs=16.8
Q ss_pred ccccc--cccCccCC---Cc--eEecCCCCcccHHHHHHH
Q 025685 44 GVCAI--CLDKTVLQ---ET--ALVKGCEHAYCATCILRW 76 (249)
Q Consensus 44 ~~C~I--Cl~~~~~~---~p--v~~l~CgH~FC~~CI~~w 76 (249)
..||- |-..+... .. +.-..|++.||..|-..|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 46876 87775322 11 323348899999887666
No 182
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=25.42 E-value=30 Score=33.22 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=7.2
Q ss_pred cccccCCCCCcccc
Q 025685 164 IGNRRWGDNGYVRA 177 (249)
Q Consensus 164 ~gnr~~~~~~~~~~ 177 (249)
-||.--.+.||..+
T Consensus 99 dG~~TDnE~GFAdS 112 (458)
T PF10446_consen 99 DGNETDNEAGFADS 112 (458)
T ss_pred cCccCccccccccc
Confidence 46655555555444
No 183
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.20 E-value=36 Score=25.57 Aligned_cols=13 Identities=23% Similarity=0.989 Sum_probs=11.4
Q ss_pred cccHHHHHHHHhc
Q 025685 67 AYCATCILRWASY 79 (249)
Q Consensus 67 ~FC~~CI~~w~~~ 79 (249)
.||..|+..|...
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999873
No 184
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.10 E-value=68 Score=24.99 Aligned_cols=44 Identities=18% Similarity=0.452 Sum_probs=28.1
Q ss_pred ccccccccCccCC-----------CceEecCCCCcccHHHHHHHHhcCCCCCCCCCc
Q 025685 44 GVCAICLDKTVLQ-----------ETALVKGCEHAYCATCILRWASYVRNPTCPQCK 89 (249)
Q Consensus 44 ~~C~ICl~~~~~~-----------~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR 89 (249)
..|--|+..|... ....-..|.+.||.+|=.=+-+ ....||-|-
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe--~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHE--SLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhh--hccCCcCCC
Confidence 4599999884211 0122467999999999543333 456799884
No 185
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=24.89 E-value=48 Score=29.17 Aligned_cols=25 Identities=28% Similarity=0.663 Sum_probs=19.0
Q ss_pred ccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 68 YCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 68 FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.|.+|-...-. ....||+|+....+
T Consensus 251 ~ClsChqqIHR--NAPiCPlCKaKsRS 275 (286)
T KOG4451|consen 251 VCLSCHQQIHR--NAPICPLCKAKSRS 275 (286)
T ss_pred HHHHHHHHHhc--CCCCCcchhhcccc
Confidence 47888777665 57889999887654
No 186
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=24.68 E-value=73 Score=18.38 Aligned_cols=36 Identities=22% Similarity=0.547 Sum_probs=20.2
Q ss_pred ccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 025685 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92 (249)
Q Consensus 46 C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~ 92 (249)
|..|...|.....+ +..=+..||..| +.|..|..++
T Consensus 2 C~~C~~~i~~~~~~-~~~~~~~~H~~C----------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELV-LRALGKVWHPEC----------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEE-EEeCCccccccC----------CCCcccCCcC
Confidence 77788874222122 333456666655 3477776655
No 187
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.64 E-value=23 Score=33.86 Aligned_cols=36 Identities=17% Similarity=0.456 Sum_probs=24.5
Q ss_pred ccccccccCccCCC---ceEe--cCCCCcccHHHHHHHHhc
Q 025685 44 GVCAICLDKTVLQE---TALV--KGCEHAYCATCILRWASY 79 (249)
Q Consensus 44 ~~C~ICl~~~~~~~---pv~~--l~CgH~FC~~CI~~w~~~ 79 (249)
-.||.|...+.... .... .+|.|.||..|+..|...
T Consensus 227 k~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 227 KECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred ccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 34999998862211 1112 249999999998888874
No 188
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=24.59 E-value=33 Score=19.40 Aligned_cols=11 Identities=27% Similarity=0.718 Sum_probs=7.5
Q ss_pred CCCCCCcccCc
Q 025685 83 PTCPQCKHPFE 93 (249)
Q Consensus 83 ~~CP~CR~~~~ 93 (249)
..||+|...+.
T Consensus 2 v~CPiC~~~v~ 12 (26)
T smart00734 2 VQCPVCFREVP 12 (26)
T ss_pred CcCCCCcCccc
Confidence 35888877663
No 189
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=24.06 E-value=33 Score=30.87 Aligned_cols=52 Identities=23% Similarity=0.485 Sum_probs=35.4
Q ss_pred CcccccccccCccCCCce-------EecCCCCcccHHHHHH-HHhcC--------CCCCCCCCcccCcc
Q 025685 42 HGGVCAICLDKTVLQETA-------LVKGCEHAYCATCILR-WASYV--------RNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv-------~~l~CgH~FC~~CI~~-w~~~~--------~~~~CP~CR~~~~~ 94 (249)
..+.|.+|-..| ...|. -.++|...+|..=+.+ |+... ..+.||.|..-|.+
T Consensus 160 ka~~C~~C~K~Y-vSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFAD 227 (279)
T KOG2462|consen 160 KAFSCKYCGKVY-VSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFAD 227 (279)
T ss_pred ccccCCCCCcee-eehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcc
Confidence 456788888775 22221 1368888888877765 88742 23689999999876
No 190
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=23.71 E-value=42 Score=34.21 Aligned_cols=53 Identities=17% Similarity=0.508 Sum_probs=35.0
Q ss_pred CCCcccccccccCccCCCc---------eEecCCCCcc--------------------cHHHHHHHHhc------CCCCC
Q 025685 40 GNHGGVCAICLDKTVLQET---------ALVKGCEHAY--------------------CATCILRWASY------VRNPT 84 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~p---------v~~l~CgH~F--------------------C~~CI~~w~~~------~~~~~ 84 (249)
..+-.+|.-|+..+ .+| +....||..| |..|-..+... .+...
T Consensus 98 ~pD~a~C~~Cl~Ei--~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~a 175 (750)
T COG0068 98 PPDAATCEDCLEEI--FDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIA 175 (750)
T ss_pred CCchhhhHHHHHHh--cCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCcccccccccccc
Confidence 34567899999874 222 1124677666 99999877652 34578
Q ss_pred CCCCcccCcc
Q 025685 85 CPQCKHPFEF 94 (249)
Q Consensus 85 CP~CR~~~~~ 94 (249)
||.|.-.+..
T Consensus 176 Cp~CGP~~~l 185 (750)
T COG0068 176 CPKCGPHLFL 185 (750)
T ss_pred CcccCCCeEE
Confidence 9999665443
No 191
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=23.58 E-value=42 Score=29.63 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=34.2
Q ss_pred cccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCC
Q 025685 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQ 87 (249)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~ 87 (249)
+..|||-+.. ..-|+....|.|.|=.+-|...+.......||.
T Consensus 189 ~nrCpitl~p--~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 189 SNRCPITLNP--DFYPILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred cccCCcccCc--chhHHHHhhhcccccHHHHHHHhcCCceeecch
Confidence 4679998888 677887889999999999998887434556774
No 192
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.81 E-value=38 Score=32.62 Aligned_cols=65 Identities=22% Similarity=0.334 Sum_probs=39.3
Q ss_pred CCCCCccccccc-ccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcccccchhhhh
Q 025685 38 GFGNHGGVCAIC-LDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDG 103 (249)
Q Consensus 38 ~~~~~~~~C~IC-l~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~~~~~~~l~~ 103 (249)
-...+++.|++| ...+ +..-.+..-|.-+||..||...+.......|+.|...-..+.+...+..
T Consensus 214 ~~~~e~~~c~~~~~~~~-~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~~~~~~~~p~~~r~ 279 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVM-LDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNVLADDLLPPKTLRD 279 (448)
T ss_pred ccCCccccCceecchhh-HHHHHhhhhhcccCCccccccccccccCCcchhhcccccccCCchhhHH
Confidence 345678899999 5552 2233333578889999999887764344455555444333444444433
No 193
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=22.49 E-value=29 Score=38.87 Aligned_cols=9 Identities=44% Similarity=0.781 Sum_probs=4.9
Q ss_pred CCCCCCCcc
Q 025685 82 NPTCPQCKH 90 (249)
Q Consensus 82 ~~~CP~CR~ 90 (249)
..+||.-+.
T Consensus 93 ~~~~~~~~~ 101 (2849)
T PTZ00415 93 QRTCPFHKE 101 (2849)
T ss_pred cccCccccc
Confidence 346776544
No 194
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=22.37 E-value=88 Score=23.42 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=22.9
Q ss_pred CcccccccccCccCCCceEe--cCCCCcccHHHHHH
Q 025685 42 HGGVCAICLDKTVLQETALV--KGCEHAYCATCILR 75 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~--l~CgH~FC~~CI~~ 75 (249)
....|.||... ..-.+.- ..|...||..|...
T Consensus 54 ~~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKS--GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHH
Confidence 56789999998 4433333 34888999999755
No 195
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=22.02 E-value=64 Score=30.18 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=14.5
Q ss_pred CCcccccccccCccCCCceEecCCC
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCE 65 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~Cg 65 (249)
..+..||+|-+.+ ..-..-++.|.
T Consensus 13 dl~ElCPVCGDkV-SGYHYGLLTCE 36 (475)
T KOG4218|consen 13 DLGELCPVCGDKV-SGYHYGLLTCE 36 (475)
T ss_pred ccccccccccCcc-ccceeeeeehh
Confidence 4567799999984 22333355554
No 196
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.99 E-value=52 Score=27.13 Aligned_cols=25 Identities=24% Similarity=0.804 Sum_probs=19.4
Q ss_pred CCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 65 EHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 65 gH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.+.||..|-..-.. .||.|..++.-
T Consensus 27 ~~~fC~kCG~~tI~-----~Cp~C~~~IrG 51 (158)
T PF10083_consen 27 REKFCSKCGAKTIT-----SCPNCSTPIRG 51 (158)
T ss_pred HHHHHHHhhHHHHH-----HCcCCCCCCCC
Confidence 46799999876554 39999998865
No 197
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=21.80 E-value=28 Score=28.51 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=22.6
Q ss_pred CCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.+....||.|.-.|.+.+.. . ..+.||.|..++..
T Consensus 106 ~~~~Y~Cp~c~~r~tf~eA~------------------~--~~F~Cp~Cg~~L~~ 140 (158)
T TIGR00373 106 NNMFFICPNMCVRFTFNEAM------------------E--LNFTCPRCGAMLDY 140 (158)
T ss_pred CCCeEECCCCCcEeeHHHHH------------------H--cCCcCCCCCCEeee
Confidence 34667788887664332222 2 37899999988754
No 198
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=21.30 E-value=65 Score=20.00 Aligned_cols=23 Identities=22% Similarity=0.671 Sum_probs=13.2
Q ss_pred ccccccCccCCC-ceEecCCCCcccH
Q 025685 46 CAICLDKTVLQE-TALVKGCEHAYCA 70 (249)
Q Consensus 46 C~ICl~~~~~~~-pv~~l~CgH~FC~ 70 (249)
|.+|... ..- |..-.-|+..||.
T Consensus 1 C~~C~~~--~~l~~f~C~~C~~~FC~ 24 (39)
T smart00154 1 CHFCRKK--VGLTGFKCRHCGNLFCG 24 (39)
T ss_pred CcccCCc--ccccCeECCccCCcccc
Confidence 5566665 333 5534347777775
No 199
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=21.30 E-value=35 Score=28.57 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=22.3
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
+....||.|.-.|.+.+. .. ..+.||.|..++..
T Consensus 115 ~~~Y~Cp~C~~rytf~eA------------------~~--~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 115 NMFFFCPNCHIRFTFDEA------------------ME--YGFRCPQCGEMLEE 148 (178)
T ss_pred CCEEECCCCCcEEeHHHH------------------hh--cCCcCCCCCCCCee
Confidence 456678877766433222 12 47899999998865
No 200
>KOG3183 consensus Predicted Zn-finger protein [General function prediction only]
Probab=21.14 E-value=40 Score=29.75 Aligned_cols=49 Identities=22% Similarity=0.444 Sum_probs=33.4
Q ss_pred cccc--ccccCccCCCceEecCCCCcccHHHHHH------HHhc--CCCCCCCCCcccCcc
Q 025685 44 GVCA--ICLDKTVLQETALVKGCEHAYCATCILR------WASY--VRNPTCPQCKHPFEF 94 (249)
Q Consensus 44 ~~C~--ICl~~~~~~~pv~~l~CgH~FC~~CI~~------w~~~--~~~~~CP~CR~~~~~ 94 (249)
--|. .|..+ ..-|+..-.|++.||..=... |... ....+||.|-.++..
T Consensus 9 kHCs~~~Ckql--DFLPf~Cd~C~~~FC~eHrsye~H~Cp~~~~~~~~v~icp~cs~pv~~ 67 (250)
T KOG3183|consen 9 KHCSVPYCKQL--DFLPFKCDGCSGIFCLEHRSYESHHCPKGLRIDVQVPICPLCSKPVPT 67 (250)
T ss_pred cccCcchhhhc--cccceeeCCccchhhhccchHhhcCCCcccccceeecccCCCCCCCCC
Confidence 3476 78888 677887889999999763321 2211 234689999888764
No 201
>PF15616 TerY-C: TerY-C metal binding domain
Probab=21.05 E-value=69 Score=25.64 Aligned_cols=42 Identities=24% Similarity=0.465 Sum_probs=29.7
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
.....||-|-..+ . ..+-.||+.||..= ....+||-|.....
T Consensus 75 ~g~PgCP~CGn~~--~--fa~C~CGkl~Ci~g-------~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 75 IGAPGCPHCGNQY--A--FAVCGCGKLFCIDG-------EGEVTCPWCGNEGS 116 (131)
T ss_pred cCCCCCCCCcChh--c--EEEecCCCEEEeCC-------CCCEECCCCCCeee
Confidence 3457799999882 2 22448999999642 25689999988664
No 202
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=20.88 E-value=17 Score=21.42 Aligned_cols=25 Identities=28% Similarity=0.679 Sum_probs=10.7
Q ss_pred CcccHHHHHHHHhc--CCCCCCCCCcc
Q 025685 66 HAYCATCILRWASY--VRNPTCPQCKH 90 (249)
Q Consensus 66 H~FC~~CI~~w~~~--~~~~~CP~CR~ 90 (249)
|.||..|=.+.... .....||.|..
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 66777775442221 12346787754
No 203
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=20.17 E-value=65 Score=25.90 Aligned_cols=13 Identities=38% Similarity=0.889 Sum_probs=10.4
Q ss_pred CCCCCCCCcccCc
Q 025685 81 RNPTCPQCKHPFE 93 (249)
Q Consensus 81 ~~~~CP~CR~~~~ 93 (249)
+.+.||.|...+.
T Consensus 122 ~~f~Cp~Cg~~l~ 134 (147)
T smart00531 122 GTFTCPRCGEELE 134 (147)
T ss_pred CcEECCCCCCEEE
Confidence 4588999988875
No 204
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=20.14 E-value=64 Score=20.33 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=12.0
Q ss_pred ccccccccCccCCCceEecC----CCCcccHHH
Q 025685 44 GVCAICLDKTVLQETALVKG----CEHAYCATC 72 (249)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~l~----CgH~FC~~C 72 (249)
.-||+|-.. +...+.+ =||.||..|
T Consensus 4 ~pCP~CGG~----DrFri~~d~~~~G~~~C~~C 32 (40)
T PF08273_consen 4 GPCPICGGK----DRFRIFDDKDGRGTWICRQC 32 (40)
T ss_dssp E--TTTT-T----TTEEEETT----S-EEETTT
T ss_pred CCCCCCcCc----cccccCcCcccCCCEECCCC
Confidence 358999765 2222222 388888888
Done!