Query 025685
Match_columns 249
No_of_seqs 231 out of 1815
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 15:23:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025685.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025685hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ztg_A E3 ubiquitin-protein li 99.5 2.9E-14 9.8E-19 105.5 6.8 70 39-111 9-82 (92)
2 1t1h_A Gspef-atpub14, armadill 99.5 2.8E-14 9.5E-19 102.4 6.3 67 40-110 5-73 (78)
3 2kr4_A Ubiquitin conjugation f 99.5 8.1E-14 2.8E-18 102.3 6.7 69 39-112 10-80 (85)
4 3fl2_A E3 ubiquitin-protein li 99.5 1.1E-14 3.8E-19 113.8 2.1 66 41-110 50-118 (124)
5 2kre_A Ubiquitin conjugation f 99.4 1.6E-13 5.6E-18 103.8 6.1 67 39-110 25-93 (100)
6 1wgm_A Ubiquitin conjugation f 99.4 2.9E-13 9.8E-18 102.1 6.5 68 39-111 18-88 (98)
7 1z6u_A NP95-like ring finger p 99.4 6.3E-14 2.2E-18 113.5 3.1 66 41-110 76-144 (150)
8 3lrq_A E3 ubiquitin-protein li 99.4 1.5E-13 5.2E-18 103.6 4.9 63 42-107 21-85 (100)
9 4ayc_A E3 ubiquitin-protein li 99.4 1.3E-13 4.5E-18 109.8 4.7 59 42-105 52-110 (138)
10 2y43_A E3 ubiquitin-protein li 99.4 2E-13 6.8E-18 102.5 5.4 64 42-109 21-86 (99)
11 2ckl_A Polycomb group ring fin 99.4 4.7E-13 1.6E-17 102.0 5.8 65 41-109 13-83 (108)
12 2csy_A Zinc finger protein 183 99.4 6.6E-13 2.3E-17 96.0 5.7 54 40-98 12-66 (81)
13 2yur_A Retinoblastoma-binding 99.4 6.6E-13 2.2E-17 94.6 5.6 52 39-93 11-63 (74)
14 2djb_A Polycomb group ring fin 99.4 5.9E-13 2E-17 94.2 5.0 53 38-94 10-62 (72)
15 2egp_A Tripartite motif-contai 99.3 1.3E-13 4.3E-18 98.9 1.2 62 39-103 8-76 (79)
16 2ecw_A Tripartite motif-contai 99.3 4.5E-13 1.5E-17 96.9 4.1 62 39-103 15-82 (85)
17 2kiz_A E3 ubiquitin-protein li 99.3 1.4E-12 4.9E-17 91.2 5.7 53 40-94 11-63 (69)
18 2ecv_A Tripartite motif-contai 99.3 6.9E-13 2.4E-17 95.9 4.1 62 39-103 15-82 (85)
19 2ckl_B Ubiquitin ligase protei 99.3 1.3E-12 4.5E-17 106.8 5.7 65 41-108 52-119 (165)
20 2c2l_A CHIP, carboxy terminus 99.3 1.6E-12 5.3E-17 113.6 6.5 69 38-110 203-273 (281)
21 2ecy_A TNF receptor-associated 99.3 1.8E-12 6E-17 90.1 4.9 53 38-94 10-62 (66)
22 2ysl_A Tripartite motif-contai 99.3 2.5E-12 8.7E-17 90.7 5.7 54 38-94 15-69 (73)
23 2ect_A Ring finger protein 126 99.3 1.9E-12 6.4E-17 92.8 5.0 53 40-94 12-64 (78)
24 1iym_A EL5; ring-H2 finger, ub 99.3 2.2E-12 7.4E-17 86.2 4.8 51 41-93 3-54 (55)
25 2ep4_A Ring finger protein 24; 99.3 2.6E-12 8.9E-17 91.1 5.1 54 39-94 11-64 (74)
26 3l11_A E3 ubiquitin-protein li 99.3 9.5E-13 3.3E-17 101.3 2.5 68 41-112 13-89 (115)
27 2yu4_A E3 SUMO-protein ligase 99.3 4.4E-12 1.5E-16 94.7 6.0 67 41-109 5-80 (94)
28 2d8t_A Dactylidin, ring finger 99.3 2.1E-12 7.3E-17 91.0 3.9 50 40-94 12-61 (71)
29 1x4j_A Ring finger protein 38; 99.3 1.9E-12 6.5E-17 92.2 3.6 51 41-93 21-71 (75)
30 2f42_A STIP1 homology and U-bo 99.3 4.4E-12 1.5E-16 105.5 6.2 69 38-110 101-171 (179)
31 2l0b_A E3 ubiquitin-protein li 99.3 3.1E-12 1.1E-16 94.8 4.7 52 40-93 37-88 (91)
32 1chc_A Equine herpes virus-1 r 99.3 2.9E-12 1E-16 89.3 4.3 50 41-94 3-52 (68)
33 1jm7_B BARD1, BRCA1-associated 99.3 2E-12 6.7E-17 100.1 3.2 63 42-110 21-85 (117)
34 3hct_A TNF receptor-associated 99.2 5.1E-12 1.7E-16 97.9 5.3 68 36-107 11-80 (118)
35 1jm7_A BRCA1, breast cancer ty 99.2 5.1E-12 1.7E-16 96.3 5.2 65 42-109 20-87 (112)
36 2ysj_A Tripartite motif-contai 99.2 9.7E-12 3.3E-16 85.4 5.8 49 37-88 14-63 (63)
37 2ea6_A Ring finger protein 4; 99.2 3.2E-12 1.1E-16 88.9 3.2 50 40-93 12-67 (69)
38 3ng2_A RNF4, snurf, ring finge 99.2 3E-12 1E-16 89.8 2.9 51 40-94 7-63 (71)
39 2ct2_A Tripartite motif protei 99.2 7.3E-12 2.5E-16 91.3 5.2 54 38-94 10-68 (88)
40 2ecm_A Ring finger and CHY zin 99.2 8.2E-12 2.8E-16 83.3 4.5 51 41-93 3-54 (55)
41 1g25_A CDK-activating kinase a 99.2 8.1E-12 2.8E-16 86.4 3.8 50 42-94 2-55 (65)
42 2xeu_A Ring finger protein 4; 99.2 4.5E-12 1.5E-16 86.9 2.3 49 42-94 2-56 (64)
43 2ecj_A Tripartite motif-contai 99.2 1.9E-11 6.4E-16 82.3 5.1 48 38-88 10-58 (58)
44 1rmd_A RAG1; V(D)J recombinati 99.2 1.6E-11 5.4E-16 94.6 4.9 49 42-94 22-70 (116)
45 1e4u_A Transcriptional repress 99.2 3.2E-11 1.1E-15 87.1 5.3 53 40-94 8-62 (78)
46 2ecn_A Ring finger protein 141 99.1 9E-12 3.1E-16 87.3 2.0 50 39-94 11-60 (70)
47 3htk_C E3 SUMO-protein ligase 99.1 2.5E-11 8.7E-16 106.0 4.9 69 38-108 176-248 (267)
48 2ecl_A Ring-box protein 2; RNF 99.1 3.8E-11 1.3E-15 87.0 5.1 52 41-94 13-76 (81)
49 1v87_A Deltex protein 2; ring- 99.1 4E-11 1.4E-15 91.8 4.3 53 42-94 24-94 (114)
50 3hcs_A TNF receptor-associated 99.1 7.1E-11 2.4E-15 96.8 4.7 66 36-105 11-78 (170)
51 3dpl_R Ring-box protein 1; ubi 99.1 1.1E-10 3.8E-15 89.1 5.3 50 42-93 36-100 (106)
52 4ap4_A E3 ubiquitin ligase RNF 99.0 7.4E-11 2.5E-15 91.9 3.2 50 41-94 5-60 (133)
53 3knv_A TNF receptor-associated 99.0 4.7E-11 1.6E-15 95.6 1.6 51 39-93 27-77 (141)
54 1bor_A Transcription factor PM 99.0 7.1E-11 2.4E-15 79.6 2.0 46 41-94 4-49 (56)
55 4ic3_A E3 ubiquitin-protein li 99.0 1.5E-10 5.1E-15 82.5 1.7 44 42-94 23-67 (74)
56 2d8s_A Cellular modulator of i 99.0 5.8E-10 2E-14 80.9 4.9 54 40-94 12-70 (80)
57 2vje_A E3 ubiquitin-protein li 98.9 5.9E-10 2E-14 77.2 3.5 50 41-94 6-57 (64)
58 2y1n_A E3 ubiquitin-protein li 98.9 1E-09 3.6E-14 101.0 5.0 50 41-94 330-379 (389)
59 2vje_B MDM4 protein; proto-onc 98.9 9.7E-10 3.3E-14 75.9 3.3 49 42-94 6-56 (63)
60 4a0k_B E3 ubiquitin-protein li 98.9 2.8E-10 9.6E-15 88.3 0.5 50 42-93 47-111 (117)
61 1wim_A KIAA0161 protein; ring 98.8 1.2E-09 4.2E-14 81.0 2.7 49 41-91 3-61 (94)
62 4ap4_A E3 ubiquitin ligase RNF 98.8 1.1E-09 3.8E-14 85.1 2.5 51 40-94 69-125 (133)
63 2ecg_A Baculoviral IAP repeat- 98.8 1.1E-09 3.8E-14 78.0 1.9 44 42-94 24-68 (75)
64 2yho_A E3 ubiquitin-protein li 98.8 9.6E-10 3.3E-14 79.4 1.3 43 43-94 18-61 (79)
65 2ct0_A Non-SMC element 1 homol 98.7 1.6E-08 5.4E-13 72.2 5.4 53 40-94 12-64 (74)
66 2ea5_A Cell growth regulator w 98.7 8.8E-09 3E-13 72.2 3.4 46 40-94 12-58 (68)
67 2bay_A PRE-mRNA splicing facto 98.6 1.1E-08 3.9E-13 70.2 2.8 48 43-94 3-50 (61)
68 3t6p_A Baculoviral IAP repeat- 98.6 1.4E-08 4.6E-13 92.5 1.7 44 42-94 294-338 (345)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.4 1.4E-07 4.7E-12 64.5 3.7 50 41-93 4-58 (60)
70 3vk6_A E3 ubiquitin-protein li 98.2 1.4E-06 4.8E-11 65.0 4.2 47 45-94 3-49 (101)
71 3k1l_B Fancl; UBC, ring, RWD, 98.1 7.3E-07 2.5E-11 80.5 1.3 53 41-93 306-372 (381)
72 3nw0_A Non-structural maintena 97.5 9E-05 3.1E-09 63.9 4.7 51 42-94 179-229 (238)
73 3i2d_A E3 SUMO-protein ligase 96.6 0.0013 4.6E-08 59.8 4.1 51 42-94 248-300 (371)
74 3m62_A Ubiquitin conjugation f 96.6 0.0027 9.3E-08 64.2 6.3 72 37-113 885-959 (968)
75 2jun_A Midline-1; B-BOX, TRIM, 96.0 0.0037 1.3E-07 46.0 3.0 34 42-76 2-36 (101)
76 4fo9_A E3 SUMO-protein ligase 92.5 0.15 5.1E-06 46.2 5.4 52 41-94 213-266 (360)
77 2ko5_A Ring finger protein Z; 91.7 0.089 3.1E-06 38.6 2.3 47 42-94 27-73 (99)
78 2cs3_A Protein C14ORF4, MY039 88.7 0.47 1.6E-05 33.7 3.9 36 40-78 12-51 (93)
79 2k16_A Transcription initiatio 87.4 0.17 5.9E-06 35.1 1.0 53 40-92 15-69 (75)
80 2lri_C Autoimmune regulator; Z 86.5 0.75 2.6E-05 31.3 3.9 48 42-92 11-60 (66)
81 1weo_A Cellulose synthase, cat 85.0 1.7 5.9E-05 31.4 5.3 52 41-93 14-69 (93)
82 2lbm_A Transcriptional regulat 82.7 1.8 6E-05 34.1 4.9 50 38-90 58-116 (142)
83 2l5u_A Chromodomain-helicase-D 80.7 0.95 3.3E-05 30.1 2.4 48 40-90 8-57 (61)
84 1we9_A PHD finger family prote 80.6 0.36 1.2E-05 32.3 0.2 52 40-91 3-58 (64)
85 3lqh_A Histone-lysine N-methyl 77.2 1.5 5.3E-05 35.8 3.1 52 43-94 2-66 (183)
86 3ql9_A Transcriptional regulat 76.3 6 0.00021 30.4 6.0 50 38-90 52-110 (129)
87 3o36_A Transcription intermedi 75.0 0.96 3.3E-05 36.6 1.3 48 42-92 3-52 (184)
88 2lv9_A Histone-lysine N-methyl 73.8 1.4 4.9E-05 32.1 1.8 49 41-90 26-75 (98)
89 3u5n_A E3 ubiquitin-protein li 73.7 0.81 2.8E-05 37.9 0.5 49 41-92 5-55 (207)
90 2ysm_A Myeloid/lymphoid or mix 73.5 1.5 5.1E-05 32.5 1.9 50 40-89 4-55 (111)
91 1mm2_A MI2-beta; PHD, zinc fin 71.4 1.2 4.1E-05 29.6 0.8 49 40-91 6-56 (61)
92 1z60_A TFIIH basal transcripti 71.0 2.9 9.8E-05 27.8 2.6 43 44-88 16-58 (59)
93 1wil_A KIAA1045 protein; ring 70.9 6.5 0.00022 28.1 4.6 48 41-90 13-75 (89)
94 1weu_A Inhibitor of growth fam 70.8 1.7 5.8E-05 31.5 1.6 51 40-92 33-86 (91)
95 1wep_A PHF8; structural genomi 70.5 2.4 8.2E-05 29.5 2.3 53 40-93 9-65 (79)
96 2ku3_A Bromodomain-containing 69.7 1.5 5E-05 30.2 1.0 53 38-90 11-65 (71)
97 1wen_A Inhibitor of growth fam 69.7 1.9 6.6E-05 29.6 1.6 51 40-92 13-66 (71)
98 2d8v_A Zinc finger FYVE domain 68.0 4.1 0.00014 27.7 2.9 33 41-77 6-39 (67)
99 1f62_A Transcription factor WS 67.4 3.7 0.00013 25.8 2.6 46 45-90 2-49 (51)
100 2l43_A N-teminal domain from h 66.6 1.7 5.9E-05 31.1 0.9 52 41-92 23-76 (88)
101 2yql_A PHD finger protein 21A; 65.2 0.82 2.8E-05 29.8 -1.0 48 40-90 6-55 (56)
102 1fp0_A KAP-1 corepressor; PHD 65.1 2.9 0.0001 30.1 1.8 50 39-91 21-72 (88)
103 1wem_A Death associated transc 64.8 2.4 8.3E-05 29.2 1.3 50 41-91 14-70 (76)
104 3a1b_A DNA (cytosine-5)-methyl 63.9 13 0.00045 29.6 5.7 50 39-91 75-134 (159)
105 2puy_A PHD finger protein 21A; 63.6 1.4 4.8E-05 29.0 -0.1 47 41-90 3-51 (60)
106 3mjh_B Early endosome antigen 62.5 1.6 5.3E-05 25.9 -0.0 11 42-52 4-14 (34)
107 1xwh_A Autoimmune regulator; P 62.4 1.3 4.3E-05 29.9 -0.5 47 41-90 6-54 (66)
108 3o70_A PHD finger protein 13; 60.9 1.7 5.7E-05 29.7 -0.1 52 38-90 14-66 (68)
109 2pv0_B DNA (cytosine-5)-methyl 60.6 15 0.00052 33.4 6.1 49 40-91 90-148 (386)
110 1joc_A EEA1, early endosomal a 60.1 4.9 0.00017 30.6 2.4 35 41-75 67-102 (125)
111 1wew_A DNA-binding family prot 57.8 3.1 0.00011 28.9 0.9 50 41-91 14-72 (78)
112 2yw8_A RUN and FYVE domain-con 57.4 7.5 0.00026 27.1 2.9 36 40-75 16-52 (82)
113 1z2q_A LM5-1; membrane protein 56.6 8.4 0.00029 27.0 3.0 37 39-75 17-54 (84)
114 2yt5_A Metal-response element- 56.5 1.9 6.4E-05 28.8 -0.5 52 40-91 3-61 (66)
115 2ri7_A Nucleosome-remodeling f 56.2 2.1 7.1E-05 34.2 -0.3 50 41-91 6-59 (174)
116 2ro1_A Transcription intermedi 53.5 3.7 0.00013 33.4 0.8 46 44-92 3-50 (189)
117 2ct7_A Ring finger protein 31; 53.2 1.7 5.7E-05 30.9 -1.2 41 46-86 28-71 (86)
118 3t7l_A Zinc finger FYVE domain 53.0 7.9 0.00027 27.6 2.4 34 42-75 19-53 (90)
119 2jmi_A Protein YNG1, ING1 homo 51.5 2.4 8.1E-05 30.7 -0.7 49 40-90 23-75 (90)
120 1x4u_A Zinc finger, FYVE domai 51.3 10 0.00036 26.5 2.8 35 40-74 11-46 (84)
121 3c6w_A P28ING5, inhibitor of g 51.1 1.6 5.6E-05 28.8 -1.4 48 41-90 7-57 (59)
122 1zbd_B Rabphilin-3A; G protein 50.1 8.1 0.00028 29.8 2.2 33 41-73 53-87 (134)
123 2zet_C Melanophilin; complex, 49.9 9 0.00031 30.3 2.5 49 42-91 67-117 (153)
124 1wfk_A Zinc finger, FYVE domai 49.3 12 0.0004 26.6 2.8 35 41-75 7-42 (88)
125 3v43_A Histone acetyltransfera 48.5 33 0.0011 25.1 5.4 47 42-89 4-62 (112)
126 1wd2_A Ariadne-1 protein homol 48.2 1.7 5.9E-05 28.9 -1.7 35 44-78 7-46 (60)
127 2e6r_A Jumonji/ARID domain-con 47.5 2 6.9E-05 31.0 -1.6 50 41-90 14-65 (92)
128 1vfy_A Phosphatidylinositol-3- 47.2 13 0.00046 25.2 2.7 31 44-74 12-43 (73)
129 2g6q_A Inhibitor of growth pro 47.1 2.1 7.1E-05 28.6 -1.5 48 41-90 9-59 (62)
130 3ljm_A Coil Ser L9C; de novo d 46.6 34 0.0012 18.9 3.7 24 222-246 4-27 (31)
131 2kwj_A Zinc finger protein DPF 45.9 4.7 0.00016 30.1 0.2 45 44-88 2-58 (114)
132 1y02_A CARP2, FYVE-ring finger 45.8 11 0.00036 28.6 2.2 49 40-90 16-65 (120)
133 1dvp_A HRS, hepatocyte growth 45.5 9.8 0.00034 31.4 2.2 33 42-74 160-193 (220)
134 2vnf_A ING 4, P29ING4, inhibit 45.0 2.2 7.7E-05 28.2 -1.5 47 41-90 8-58 (60)
135 2xqn_T Testin, TESS; metal-bin 43.6 19 0.00065 26.5 3.4 46 42-93 29-74 (126)
136 2jmo_A Parkin; IBR, E3 ligase, 43.2 2.1 7E-05 30.0 -2.1 35 43-77 25-69 (80)
137 3zyq_A Hepatocyte growth facto 41.6 13 0.00043 31.0 2.3 34 42-75 163-197 (226)
138 3mpx_A FYVE, rhogef and PH dom 40.9 5.7 0.0002 35.9 0.0 50 41-90 373-428 (434)
139 1wev_A Riken cDNA 1110020M19; 40.5 3.6 0.00012 29.3 -1.1 50 43-92 16-73 (88)
140 3fyb_A Protein of unknown func 39.6 11 0.00038 27.6 1.4 12 67-78 41-52 (104)
141 2o35_A Hypothetical protein DU 39.2 11 0.00039 27.6 1.4 13 67-79 42-54 (105)
142 2kgg_A Histone demethylase jar 38.2 9.5 0.00032 24.2 0.7 44 46-89 5-52 (52)
143 1x4i_A Inhibitor of growth pro 38.0 8.5 0.00029 26.2 0.5 49 41-91 4-55 (70)
144 1wee_A PHD finger family prote 36.7 4.7 0.00016 27.4 -1.0 51 40-91 13-66 (72)
145 2vpb_A Hpygo1, pygopus homolog 34.9 34 0.0012 22.7 3.2 34 41-74 6-41 (65)
146 3ask_A E3 ubiquitin-protein li 34.5 10 0.00034 32.0 0.5 46 45-90 176-224 (226)
147 2jne_A Hypothetical protein YF 34.5 2.7 9.3E-05 30.8 -2.6 43 42-94 31-73 (101)
148 2e6s_A E3 ubiquitin-protein li 33.8 12 0.00039 26.0 0.7 46 45-90 28-76 (77)
149 4gne_A Histone-lysine N-methyl 32.7 17 0.00057 26.9 1.4 49 40-93 12-64 (107)
150 3asl_A E3 ubiquitin-protein li 32.7 13 0.00045 25.1 0.8 45 46-90 21-68 (70)
151 3shb_A E3 ubiquitin-protein li 32.6 9.4 0.00032 26.5 0.0 45 46-90 29-76 (77)
152 3kqi_A GRC5, PHD finger protei 32.1 9.7 0.00033 26.0 0.0 50 41-91 8-61 (75)
153 1m3v_A FLIN4, fusion of the LI 31.9 38 0.0013 24.9 3.4 51 42-94 31-81 (122)
154 2fiy_A Protein FDHE homolog; F 31.4 7.1 0.00024 34.4 -1.0 47 41-91 180-231 (309)
155 2kpi_A Uncharacterized protein 31.2 20 0.0007 23.2 1.5 13 41-53 8-20 (56)
156 2rsd_A E3 SUMO-protein ligase 30.8 4.6 0.00016 27.2 -1.8 48 42-90 9-64 (68)
157 2xjy_A Rhombotin-2; oncoprotei 30.8 31 0.0011 25.4 2.8 49 42-93 28-77 (131)
158 2xb1_A Pygopus homolog 2, B-ce 30.3 32 0.0011 25.1 2.6 51 43-93 3-63 (105)
159 2jvx_A NF-kappa-B essential mo 29.4 13 0.00046 20.8 0.3 13 82-94 3-15 (28)
160 2cup_A Skeletal muscle LIM-pro 29.2 18 0.00063 25.4 1.1 46 42-93 32-77 (101)
161 4g9i_A Hydrogenase maturation 28.7 23 0.00079 35.1 2.1 52 40-93 103-189 (772)
162 2gmg_A Hypothetical protein PF 28.0 23 0.00077 26.2 1.4 29 57-92 66-94 (105)
163 3ttc_A HYPF, transcriptional r 26.9 25 0.00086 34.2 1.9 50 41-92 15-99 (657)
164 1g47_A Pinch protein; LIM doma 26.6 55 0.0019 21.5 3.2 42 42-94 10-51 (77)
165 1x61_A Thyroid receptor intera 25.3 93 0.0032 20.0 4.1 33 43-77 33-65 (72)
166 3vth_A Hydrogenase maturation 23.5 28 0.00096 34.4 1.6 51 40-92 108-193 (761)
167 2jrp_A Putative cytoplasmic pr 23.5 5.7 0.0002 28.1 -2.5 41 44-94 3-43 (81)
168 3kv5_D JMJC domain-containing 22.9 13 0.00046 34.7 -0.8 51 40-91 34-88 (488)
169 2cur_A Skeletal muscle LIM-pro 22.3 81 0.0028 20.2 3.3 35 42-78 30-64 (69)
170 2d8x_A Protein pinch; LIM doma 21.9 53 0.0018 21.2 2.3 35 42-78 30-64 (70)
171 2dar_A PDZ and LIM domain prot 20.9 71 0.0024 21.8 2.9 28 43-73 25-52 (90)
172 1zfo_A LAsp-1; LIM domain, zin 20.6 43 0.0015 18.6 1.4 27 44-72 4-30 (31)
173 2rgt_A Fusion of LIM/homeobox 20.6 1.1E+02 0.0037 23.6 4.3 45 42-93 32-76 (169)
174 2uzg_A Ubiquitin carboxyl-term 20.2 65 0.0022 23.0 2.6 26 44-71 26-53 (97)
No 1
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.50 E-value=2.9e-14 Score=105.53 Aligned_cols=70 Identities=24% Similarity=0.458 Sum_probs=57.8
Q ss_pred CCCCcccccccccCccCCCceEecC-CCCcccHHHHHHHHhcCCCCCCCCCcccCcc---cccchhhhhHHHHhhhh
Q 025685 39 FGNHGGVCAICLDKTVLQETALVKG-CEHAYCATCILRWASYVRNPTCPQCKHPFEF---LHVHRSLDGSISDYMFE 111 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l~-CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~---~~~~~~l~~~i~~~~~e 111 (249)
...+.+.|+||++. +.+|+ +++ |||+||..||..|+...+...||+||..+.. +.+|..+.+++..+...
T Consensus 9 ~~~~~~~C~IC~~~--~~~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~ 82 (92)
T 3ztg_A 9 PIPDELLCLICKDI--MTDAV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNE 82 (92)
T ss_dssp CCCTTTEETTTTEE--CSSCE-ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHH
T ss_pred cCCcCCCCCCCChh--hcCce-ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHH
Confidence 34578999999999 78998 568 9999999999999975456799999999742 78888888888876543
No 2
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.50 E-value=2.8e-14 Score=102.41 Aligned_cols=67 Identities=18% Similarity=0.313 Sum_probs=57.7
Q ss_pred CCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc--cccchhhhhHHHHhhh
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMF 110 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~--~~~~~~l~~~i~~~~~ 110 (249)
..+.+.|+||++. +.+|+ +++|||+||..||..|+.. +..+||+||.++.. +.+|..+..++..+..
T Consensus 5 ~~~~~~C~IC~~~--~~~Pv-~~~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~ 73 (78)
T 1t1h_A 5 FPEYFRCPISLEL--MKDPV-IVSTGQTYERSSIQKWLDA-GHKTCPKSQETLLHAGLTPNYVLKSLIALWCE 73 (78)
T ss_dssp CSSSSSCTTTSCC--CSSEE-EETTTEEEEHHHHHHHHTT-TCCBCTTTCCBCSSCCCEECTTTHHHHHHHHH
T ss_pred CcccCCCCCcccc--ccCCE-EcCCCCeecHHHHHHHHHH-CcCCCCCCcCCCChhhCccCHHHHHHHHHHHH
Confidence 3567899999999 88998 5599999999999999983 47899999999975 7888999988887654
No 3
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.46 E-value=8.1e-14 Score=102.35 Aligned_cols=69 Identities=16% Similarity=0.065 Sum_probs=60.0
Q ss_pred CCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc--cccchhhhhHHHHhhhhH
Q 025685 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMFEE 112 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~--~~~~~~l~~~i~~~~~ee 112 (249)
...+.+.||||+++ +.+|| +++|||+||..||..|+. ...+||+|+.++.. +.+|..+.+++..+....
T Consensus 10 ~~p~~~~CpI~~~~--m~dPV-~~~cGhtf~r~~I~~~l~--~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~ 80 (85)
T 2kr4_A 10 DAPDEFRDPLMDTL--MTDPV-RLPSGTVMDRSIILRHLL--NSPTDPFNRQMLTESMLEPVPELKEQIQAWMREK 80 (85)
T ss_dssp TCCTTTBCTTTCSB--CSSEE-ECTTSCEEEHHHHHHHHH--HCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred cCchheECcccCch--hcCCe-ECCCCCEECHHHHHHHHh--cCCCCCCCcCCCChHhcchHHHHHHHHHHHHHHh
Confidence 34578999999999 89999 668999999999999998 36789999999976 889999999998876543
No 4
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.46 E-value=1.1e-14 Score=113.77 Aligned_cols=66 Identities=18% Similarity=0.436 Sum_probs=56.1
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc---cccchhhhhHHHHhhh
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF---LHVHRSLDGSISDYMF 110 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~---~~~~~~l~~~i~~~~~ 110 (249)
.+.+.|+||++. +.+|+ +++|||+||..||..|+.. ....||+||.++.. +.+|..+..++..++.
T Consensus 50 ~~~~~C~IC~~~--~~~p~-~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 50 EETFQCICCQEL--VFRPI-TTVCQHNVCKDCLDRSFRA-QVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHTBCTTTSSB--CSSEE-ECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred ccCCCCCcCChH--HcCcE-EeeCCCcccHHHHHHHHhH-CcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 356889999999 78898 5699999999999999983 56699999999975 8888888888877653
No 5
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.42 E-value=1.6e-13 Score=103.84 Aligned_cols=67 Identities=15% Similarity=0.051 Sum_probs=58.9
Q ss_pred CCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc--cccchhhhhHHHHhhh
Q 025685 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMF 110 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~--~~~~~~l~~~i~~~~~ 110 (249)
...+.+.||||+++ +.+|| +++|||+||..||..|+. ...+||+|+.++.. +.+|..+...+..+..
T Consensus 25 ~~p~~~~CpI~~~~--m~dPV-~~~cGhtf~r~~I~~~l~--~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~ 93 (100)
T 2kre_A 25 DAPDEFRDPLMDTL--MTDPV-RLPSGTIMDRSIILRHLL--NSPTDPFNRQTLTESMLEPVPELKEQIQAWMR 93 (100)
T ss_dssp SCSTTTBCTTTCSB--CSSEE-EETTTEEEEHHHHHHHTT--SCSBCSSSCCBCCTTSSEECHHHHHHHHHHHH
T ss_pred cCcHhhCCcCccCc--ccCCe-ECCCCCEEchHHHHHHHH--cCCCCCCCCCCCChhhceECHHHHHHHHHHHH
Confidence 34678999999999 99999 568999999999999998 46899999999976 8899999998888654
No 6
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.41 E-value=2.9e-13 Score=102.11 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=59.2
Q ss_pred CCCCcccccccccCccCCCceEecCCC-CcccHHHHHHHHhcCCCCCCCCCcccCcc--cccchhhhhHHHHhhhh
Q 025685 39 FGNHGGVCAICLDKTVLQETALVKGCE-HAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMFE 111 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l~Cg-H~FC~~CI~~w~~~~~~~~CP~CR~~~~~--~~~~~~l~~~i~~~~~e 111 (249)
...+.+.||||+++ +.+|| +++|| |+||..||..|+. ...+||+|+.++.. +.+|..+..++..+...
T Consensus 18 ~~p~~~~CpI~~~~--m~dPV-~~~cG~htf~r~cI~~~l~--~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~ 88 (98)
T 1wgm_A 18 DACDEFLDPIMSTL--MCDPV-VLPSSRVTVDRSTIARHLL--SDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAE 88 (98)
T ss_dssp SCCTTTBCTTTCSB--CSSEE-ECTTTCCEEEHHHHHHHTT--TSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHH
T ss_pred cCcHhcCCcCcccc--ccCCe-ECCCCCeEECHHHHHHHHH--hCCCCCCCCCCCChhhceEcHHHHHHHHHHHHH
Confidence 34578999999999 99999 67999 9999999999998 36789999999986 88999999998886543
No 7
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.41 E-value=6.3e-14 Score=113.51 Aligned_cols=66 Identities=18% Similarity=0.459 Sum_probs=55.7
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc---cccchhhhhHHHHhhh
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF---LHVHRSLDGSISDYMF 110 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~---~~~~~~l~~~i~~~~~ 110 (249)
.+.+.|+||++. +.+|+ +++|||+||..||..|+.. ....||+||..+.. +.+|..+..++..+..
T Consensus 76 ~~~~~C~IC~~~--~~~pv-~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 76 EQSFMCVCCQEL--VYQPV-TTECFHNVCKDCLQRSFKA-QVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHTBCTTTSSB--CSSEE-ECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred ccCCEeecCChh--hcCCE-EcCCCCchhHHHHHHHHHh-CCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 356889999999 78898 5799999999999999984 45689999999975 6788888888877543
No 8
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.41 E-value=1.5e-13 Score=103.64 Aligned_cols=63 Identities=29% Similarity=0.708 Sum_probs=51.0
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc--cccchhhhhHHHH
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISD 107 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~--~~~~~~l~~~i~~ 107 (249)
+.+.|+||++. +.+|+.+++|||.||..||..|+.. ....||+||.++.. +..+..+..++..
T Consensus 21 ~~~~C~IC~~~--~~~p~~~~~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~ 85 (100)
T 3lrq_A 21 EVFRCFICMEK--LRDARLCPHCSKLCCFSCIRRWLTE-QRAQCPHCRAPLQLRELVNCRWAEEVTQQ 85 (100)
T ss_dssp HHTBCTTTCSB--CSSEEECTTTCCEEEHHHHHHHHHH-TCSBCTTTCCBCCGGGCEECTTHHHHHHH
T ss_pred CCCCCccCCcc--ccCccccCCCCChhhHHHHHHHHHH-CcCCCCCCCCcCCHHHhHhhHHHHHHHHH
Confidence 56889999999 7889865899999999999999984 33789999999876 5566666555443
No 9
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.40 E-value=1.3e-13 Score=109.83 Aligned_cols=59 Identities=29% Similarity=0.693 Sum_probs=47.3
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcccccchhhhhHH
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGSI 105 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~~~~~~~l~~~i 105 (249)
+.+.|+||++. +.+|+ +++|||+||..||..|+. ....||+||.++.....+..+...+
T Consensus 52 ~~~~C~iC~~~--~~~~~-~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~~~~~~~i 110 (138)
T 4ayc_A 52 NELQCIICSEY--FIEAV-TLNCAHSFCSYCINEWMK--RKIECPICRKDIKSKTYSLVLDNCI 110 (138)
T ss_dssp HHSBCTTTCSB--CSSEE-EETTSCEEEHHHHHHHTT--TCSBCTTTCCBCCCEEECHHHHHHH
T ss_pred ccCCCcccCcc--cCCce-ECCCCCCccHHHHHHHHH--cCCcCCCCCCcCCCCCCccchhHHH
Confidence 45789999999 78888 669999999999999998 5678999999997644444444333
No 10
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.40 E-value=2e-13 Score=102.46 Aligned_cols=64 Identities=27% Similarity=0.604 Sum_probs=54.7
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc--cccchhhhhHHHHhh
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYM 109 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~--~~~~~~l~~~i~~~~ 109 (249)
+.+.|+||++. +.+|+.+++|||+||..||..|+. ....||+||..+.. +.+|..+.+++..+.
T Consensus 21 ~~~~C~IC~~~--~~~p~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 21 DLLRCGICFEY--FNIAMIIPQCSHNYCSLCIRKFLS--YKTQCPTCCVTVTEPDLKNNRILDELVKSLN 86 (99)
T ss_dssp HHTBCTTTCSB--CSSEEECTTTCCEEEHHHHHHHHT--TCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred CCCCcccCChh--hCCcCEECCCCCHhhHHHHHHHHH--CCCCCCCCCCcCChhhCCcCHHHHHHHHHHH
Confidence 45789999999 788985669999999999999998 46789999999986 778888888877654
No 11
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.37 E-value=4.7e-13 Score=102.01 Aligned_cols=65 Identities=22% Similarity=0.597 Sum_probs=52.7
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc------cccchhhhhHHHHhh
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF------LHVHRSLDGSISDYM 109 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~------~~~~~~l~~~i~~~~ 109 (249)
.+.+.|+||++. +.+|+.+++|||+||..||..|+. ....||+||..+.. +.+|..+.+++..+.
T Consensus 13 ~~~~~C~IC~~~--~~~p~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 13 NPHLMCVLCGGY--FIDATTIIECLHSFCKTCIVRYLE--TSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp GGGTBCTTTSSB--CSSEEEETTTCCEEEHHHHHHHHT--SCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred CCcCCCccCChH--HhCcCEeCCCCChhhHHHHHHHHH--hCCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 356889999999 788986669999999999999998 45889999999874 456666666666543
No 12
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=6.6e-13 Score=95.98 Aligned_cols=54 Identities=26% Similarity=0.574 Sum_probs=45.6
Q ss_pred CCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc-cccc
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF-LHVH 98 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~-~~~~ 98 (249)
....+.|+||++. +.+|+ +++|||+||..||..|+. ....||+||.++.. +.++
T Consensus 12 ~~~~~~C~IC~~~--~~~p~-~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~~ 66 (81)
T 2csy_A 12 EEIPFRCFICRQA--FQNPV-VTKCRHYFCESCALEHFR--ATPRCYICDQPTGGIFNPA 66 (81)
T ss_dssp CCCCSBCSSSCSB--CCSEE-ECTTSCEEEHHHHHHHHH--HCSBCSSSCCBCCSCCEEC
T ss_pred CCCCCCCcCCCch--hcCee-EccCCCHhHHHHHHHHHH--CCCcCCCcCccccccCCcH
Confidence 4567899999999 78888 679999999999999998 46789999999875 4444
No 13
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.36 E-value=6.6e-13 Score=94.59 Aligned_cols=52 Identities=27% Similarity=0.523 Sum_probs=44.0
Q ss_pred CCCCcccccccccCccCCCceEecC-CCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 39 FGNHGGVCAICLDKTVLQETALVKG-CEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l~-CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
...+.+.|+||++. +.+|+ +++ |||+||..||..|+...+...||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~--~~~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDI--MTDAV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCC--CTTCE-ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChH--HhCCe-EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 44577899999999 78898 467 999999999999998544578999999764
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=5.9e-13 Score=94.20 Aligned_cols=53 Identities=25% Similarity=0.571 Sum_probs=45.5
Q ss_pred CCCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 38 GFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
....+.+.|+||++. +.+|+.+.+|||.||..||..|+. ....||+||..+..
T Consensus 10 ~~~~~~~~C~IC~~~--~~~p~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 10 SELTPYILCSICKGY--LIDATTITECLHTFCKSCIVRHFY--YSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCCGGGSCTTTSSC--CSSCEECSSSCCEECHHHHHHHHH--HCSSCTTTCCCCCS
T ss_pred hhcCCCCCCCCCChH--HHCcCEECCCCCHHHHHHHHHHHH--cCCcCCCcCcccCc
Confidence 344577899999999 778886669999999999999997 36789999999875
No 15
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.35 E-value=1.3e-13 Score=98.89 Aligned_cols=62 Identities=27% Similarity=0.611 Sum_probs=49.2
Q ss_pred CCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcC-----CCCCCCCCcccCcc--cccchhhhh
Q 025685 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYV-----RNPTCPQCKHPFEF--LHVHRSLDG 103 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~-----~~~~CP~CR~~~~~--~~~~~~l~~ 103 (249)
...+.+.|+||++. +.+|+ +++|||+||..||..|+... ....||+||..+.. +.+|..+.+
T Consensus 8 ~~~~~~~C~IC~~~--~~~p~-~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 8 NVQEEVTCPICLEL--LTEPL-SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp CCCCCCEETTTTEE--CSSCC-CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred hcccCCCCcCCCcc--cCCee-ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 34577899999999 77888 57999999999999998741 26789999999865 555555443
No 16
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.35 E-value=4.5e-13 Score=96.87 Aligned_cols=62 Identities=27% Similarity=0.665 Sum_probs=49.6
Q ss_pred CCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcC----CCCCCCCCcccCcc--cccchhhhh
Q 025685 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYV----RNPTCPQCKHPFEF--LHVHRSLDG 103 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~----~~~~CP~CR~~~~~--~~~~~~l~~ 103 (249)
...+.+.|+||++. +.+|+ +++|||.||..||..|+... ....||+||..+.. +.+|..+.+
T Consensus 15 ~~~~~~~C~IC~~~--~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 15 MIKEEVTCPICLEL--LKEPV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCCTTTSCTTTCSC--CSSCE-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred hCccCCCCcCCChh--hCcce-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 34567899999999 78888 67999999999999999852 26789999999875 555555443
No 17
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.33 E-value=1.4e-12 Score=91.20 Aligned_cols=53 Identities=26% Similarity=0.568 Sum_probs=43.7
Q ss_pred CCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
......|+||++.|....++.+++|||.||..||..|+.. ..+||+||..+..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT--NKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc--CCCCcCcCccccC
Confidence 3466789999998644455667899999999999999984 5679999999875
No 18
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=6.9e-13 Score=95.89 Aligned_cols=62 Identities=21% Similarity=0.577 Sum_probs=49.6
Q ss_pred CCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhc----CCCCCCCCCcccCcc--cccchhhhh
Q 025685 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY----VRNPTCPQCKHPFEF--LHVHRSLDG 103 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~----~~~~~CP~CR~~~~~--~~~~~~l~~ 103 (249)
...+.+.|+||++. +.+|+ +++|||.||..||..|+.. .....||+||..+.. +.+|..+.+
T Consensus 15 ~~~~~~~C~IC~~~--~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 15 NVKEEVTCPICLEL--LTQPL-SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCTTTCSC--CSSCB-CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred HccCCCCCCCCCcc--cCCce-eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 34567899999999 77887 5699999999999999874 237889999999875 555555543
No 19
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.32 E-value=1.3e-12 Score=106.79 Aligned_cols=65 Identities=34% Similarity=0.680 Sum_probs=54.0
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc---cccchhhhhHHHHh
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF---LHVHRSLDGSISDY 108 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~---~~~~~~l~~~i~~~ 108 (249)
.+.+.|+||++. +.+|+.+++|||+||..||..|+.. ....||+||.++.. +.++..+..++..+
T Consensus 52 ~~~~~C~IC~~~--~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~ 119 (165)
T 2ckl_B 52 HSELMCPICLDM--LKNTMTTKECLHRFCADCIITALRS-GNKECPTCRKKLVSKRSLRPDPNFDALISKI 119 (165)
T ss_dssp HHHHBCTTTSSB--CSSEEEETTTCCEEEHHHHHHHHHT-TCCBCTTTCCBCCSGGGEEECHHHHHHHHHH
T ss_pred CCCCCCcccChH--hhCcCEeCCCCChhHHHHHHHHHHh-CcCCCCCCCCcCCCcccCCcCHHHHHHHHHH
Confidence 456789999999 7889866799999999999999983 47889999999854 66777777776654
No 20
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.32 E-value=1.6e-12 Score=113.60 Aligned_cols=69 Identities=12% Similarity=0.055 Sum_probs=59.1
Q ss_pred CCCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc--cccchhhhhHHHHhhh
Q 025685 38 GFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMF 110 (249)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~--~~~~~~l~~~i~~~~~ 110 (249)
....+.+.||||+++ +.+|| +++|||+||..||..|+.. +..+||+|+.++.. +.+|..+..++..|..
T Consensus 203 ~~~~~~~~c~i~~~~--~~dPv-~~~~gh~f~~~~i~~~~~~-~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~ 273 (281)
T 2c2l_A 203 RDIPDYLCGKISFEL--MREPC-ITPSGITYDRKDIEEHLQR-VGHFNPVTRSPLTQEQLIPNLAMKEVIDAFIS 273 (281)
T ss_dssp CCCCSTTBCTTTCSB--CSSEE-ECSSCCEEETTHHHHHHHH-TCSSCTTTCCCCCGGGCEECHHHHHHHHHHHT
T ss_pred CCCCcccCCcCcCCH--hcCCe-ECCCCCEECHHHHHHHHHH-CCCCCcCCCCCCchhcCcccHHHHHHHHHHHH
Confidence 345578999999999 89999 6689999999999999984 34559999999986 8899999999888654
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.8e-12 Score=90.11 Aligned_cols=53 Identities=21% Similarity=0.471 Sum_probs=44.6
Q ss_pred CCCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 38 GFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
....+.+.|+||++. +.+|+ +++|||.||..||..|+.. ....||+||.++..
T Consensus 10 ~~~~~~~~C~IC~~~--~~~p~-~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLV--LCSPK-QTECGHRFCESCMAALLSS-SSPKCTACQESIVK 62 (66)
T ss_dssp CSCCCCEECTTTCCE--ESSCC-CCSSSCCCCHHHHHHHHTT-SSCCCTTTCCCCCT
T ss_pred hcCCcCCCCCCCChH--hcCee-ECCCCCHHHHHHHHHHHHh-CcCCCCCCCcCCCh
Confidence 344577899999999 78888 4799999999999999962 56789999998763
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.5e-12 Score=90.72 Aligned_cols=54 Identities=30% Similarity=0.612 Sum_probs=44.7
Q ss_pred CCCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhc-CCCCCCCCCcccCcc
Q 025685 38 GFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY-VRNPTCPQCKHPFEF 94 (249)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~-~~~~~CP~CR~~~~~ 94 (249)
....+.+.|+||++. +.+|+ +++|||.||..||..|+.. .....||+||..+..
T Consensus 15 ~~~~~~~~C~IC~~~--~~~~~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 15 NKLQEEVICPICLDI--LQKPV-TIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCBCTTTCSB--CSSEE-ECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HhCccCCEeccCCcc--cCCeE-EcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 345677899999999 77888 5599999999999999963 246789999998863
No 23
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.30 E-value=1.9e-12 Score=92.76 Aligned_cols=53 Identities=25% Similarity=0.683 Sum_probs=44.0
Q ss_pred CCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
......|+||++.|.....+.+++|+|.||..||..|+. ....||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE--QHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT--TTCSCTTTCCCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH--cCCcCcCcCCccCC
Confidence 346788999999964445556789999999999999997 45789999999875
No 24
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.30 E-value=2.2e-12 Score=86.21 Aligned_cols=51 Identities=31% Similarity=0.699 Sum_probs=41.0
Q ss_pred CCcccccccccCccCCCceEecC-CCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 41 NHGGVCAICLDKTVLQETALVKG-CEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~-CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
++...|+||++.|...+.+..++ |||.||..||..|+. ...+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~--~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG--SHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT--TCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH--cCCcCcCCCCEeE
Confidence 46678999999964434344666 999999999999997 4678999999874
No 25
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.6e-12 Score=91.09 Aligned_cols=54 Identities=26% Similarity=0.659 Sum_probs=44.1
Q ss_pred CCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.......|+||++.|.....+.+++|+|.||..||..|+.. ...||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~--~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV--RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH--CSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc--CCcCCCcCccccc
Confidence 34567889999999644455556799999999999999984 5689999999865
No 26
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.28 E-value=9.5e-13 Score=101.34 Aligned_cols=68 Identities=24% Similarity=0.414 Sum_probs=53.9
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc---------cccchhhhhHHHHhhhh
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF---------LHVHRSLDGSISDYMFE 111 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~---------~~~~~~l~~~i~~~~~e 111 (249)
.+.+.|+||++. +.+|+ +++|||+||..||..|+.. +...||+||..+.. +.++..+..++..++.+
T Consensus 13 ~~~~~C~iC~~~--~~~p~-~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~ 88 (115)
T 3l11_A 13 LSECQCGICMEI--LVEPV-TLPCNHTLCKPCFQSTVEK-ASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPR 88 (115)
T ss_dssp HHHHBCTTTCSB--CSSCE-ECTTSCEECHHHHCCCCCT-TTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHH
T ss_pred CCCCCCccCCcc--cCcee-EcCCCCHHhHHHHHHHHhH-CcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCH
Confidence 456889999999 78898 5699999999999999973 46889999999863 44566666666665544
Q ss_pred H
Q 025685 112 E 112 (249)
Q Consensus 112 e 112 (249)
+
T Consensus 89 ~ 89 (115)
T 3l11_A 89 E 89 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 27
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=4.4e-12 Score=94.65 Aligned_cols=67 Identities=25% Similarity=0.477 Sum_probs=54.2
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcC----CCCCCCC--Cccc-Ccc--cccchhhhhHHHHhh
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYV----RNPTCPQ--CKHP-FEF--LHVHRSLDGSISDYM 109 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~----~~~~CP~--CR~~-~~~--~~~~~~l~~~i~~~~ 109 (249)
...+.||||+++ +.+||.+..|||+||..||..|+... ...+||+ |+.. +.. +.+|..|..++..+.
T Consensus 5 ~~~~~CPI~~~~--~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 5 SSGFTCPITKEE--MKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN 80 (94)
T ss_dssp SSCCBCTTTCSB--CSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHH
T ss_pred CcEeECcCcCch--hcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHH
Confidence 467899999999 89999543599999999999999742 2468999 9865 543 888988888888753
No 28
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.1e-12 Score=91.05 Aligned_cols=50 Identities=22% Similarity=0.496 Sum_probs=43.1
Q ss_pred CCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
..+.+.|+||++. +.+|+ +++|||.||..||..|+. ....||+||..+..
T Consensus 12 ~~~~~~C~IC~~~--~~~~~-~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQT--CVHPV-SLPCKHVFCYLCVKGASW--LGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSB--CSSEE-EETTTEEEEHHHHHHCTT--CSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcc--cCCCE-EccCCCHHHHHHHHHHHH--CCCcCcCcCchhCH
Confidence 3567889999999 78887 559999999999999998 45889999999863
No 29
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=1.9e-12 Score=92.19 Aligned_cols=51 Identities=25% Similarity=0.664 Sum_probs=42.6
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
.+...|+||++.|.....+..++|+|.||..||..|+. ....||+||..+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~--~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLK--ANRTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHH--HCSSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHH--cCCcCcCcCCcCC
Confidence 46678999999954445566789999999999999998 3578999999875
No 30
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.27 E-value=4.4e-12 Score=105.47 Aligned_cols=69 Identities=12% Similarity=0.053 Sum_probs=59.2
Q ss_pred CCCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc--cccchhhhhHHHHhhh
Q 025685 38 GFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMF 110 (249)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~--~~~~~~l~~~i~~~~~ 110 (249)
....+.+.||||+++ +.+|| +++|||+||..||..|+.. ...+||+|+.++.. +.+|..+..++..+..
T Consensus 101 ~~ip~~f~CPI~~el--m~DPV-~~~~Ghtfer~~I~~~l~~-~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~ 171 (179)
T 2f42_A 101 REIPDYLCGKISFEL--MREPC-ITPSGITYDRKDIEEHLQR-VGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQ 171 (179)
T ss_dssp CCCCGGGBCTTTCSB--CSSEE-ECTTSCEEEHHHHHHHHHH-TCSBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred cCCcHhhcccCcccc--CCCCe-ECCCCCEECHHHHHHHHHh-CCCCCCCCcCCCChhhCcchHHHHHHHHHHHH
Confidence 345688999999999 89999 6699999999999999975 23479999999976 8899999999988653
No 31
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.27 E-value=3.1e-12 Score=94.78 Aligned_cols=52 Identities=27% Similarity=0.639 Sum_probs=43.2
Q ss_pred CCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
......|+||++.|.....+..++|||.||..||..|+. ...+||+||..+.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~--~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ--KSGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT--TTCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH--cCCcCcCcCccCC
Confidence 346788999999864445566789999999999999998 5678999999875
No 32
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.26 E-value=2.9e-12 Score=89.26 Aligned_cols=50 Identities=42% Similarity=0.970 Sum_probs=43.2
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.....|+||++. +.+|+.+++|||.||..||..|+. ....||+||.++..
T Consensus 3 ~~~~~C~IC~~~--~~~~~~~~~C~H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLED--PSNYSMALPCLHAFCYVCITRWIR--QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSC--CCSCEEETTTTEEESTTHHHHHHH--HSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCcc--ccCCcEecCCCCeeHHHHHHHHHh--CcCcCcCCChhhHh
Confidence 356789999999 677766889999999999999998 45789999998864
No 33
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.25 E-value=2e-12 Score=100.08 Aligned_cols=63 Identities=30% Similarity=0.629 Sum_probs=53.4
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc--cccchhhhhHHHHhhh
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMF 110 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~--~~~~~~l~~~i~~~~~ 110 (249)
+.+.|+||++. +.+|+.+.+|||+||..||..|+. ..||+||..+.. +.+|..+..++..+..
T Consensus 21 ~~~~C~IC~~~--~~~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~ 85 (117)
T 1jm7_B 21 KLLRCSRCTNI--LREPVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAWIQDLKINRQLDSMIQLCSK 85 (117)
T ss_dssp HTTSCSSSCSC--CSSCBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCCChH--hhCccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCccccccccHHHHHHHHHHHH
Confidence 56889999999 788984449999999999999986 679999999965 7888888888876543
No 34
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.25 E-value=5.1e-12 Score=97.86 Aligned_cols=68 Identities=22% Similarity=0.327 Sum_probs=52.3
Q ss_pred ccCCCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc--cccchhhhhHHHH
Q 025685 36 EMGFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISD 107 (249)
Q Consensus 36 ~~~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~--~~~~~~l~~~i~~ 107 (249)
+.....+.+.|+||++. +.+|+ +++|||+||..||..|+.. ....||+||.++.. +.++..+...+..
T Consensus 11 ~~~~~~~~~~C~IC~~~--~~~p~-~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~ 80 (118)
T 3hct_A 11 FDPPLESKYECPICLMA--LREAV-QTPCGHRFCKACIIKSIRD-AGHKCPVDNEILLENQLFPDNFAKREILS 80 (118)
T ss_dssp BSSCCCGGGBCTTTCSB--CSSEE-ECTTSCEEEHHHHHHHHHH-HCSBCTTTCCBCCGGGCEECHHHHHHHHT
T ss_pred hccCCCCCCCCCcCChh--hcCeE-ECCcCChhhHHHHHHHHhh-CCCCCCCCCCCcCHHhcccCHHHHHHHcc
Confidence 34456678999999999 78887 5699999999999999984 34489999999876 4455444444443
No 35
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.25 E-value=5.1e-12 Score=96.33 Aligned_cols=65 Identities=23% Similarity=0.601 Sum_probs=51.9
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcC-CCCCCCCCcccCcc--cccchhhhhHHHHhh
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYV-RNPTCPQCKHPFEF--LHVHRSLDGSISDYM 109 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~-~~~~CP~CR~~~~~--~~~~~~l~~~i~~~~ 109 (249)
+.+.|+||++. +.+|+ +++|||.||..||..|+... +...||+||..+.. +..+..+..++..+.
T Consensus 20 ~~~~C~IC~~~--~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 20 KILECPICLEL--IKEPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL 87 (112)
T ss_dssp HHTSCSSSCCC--CSSCC-BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred CCCCCcccChh--hcCeE-ECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHH
Confidence 45789999999 78888 56999999999999999842 23689999999876 666766666666543
No 36
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=9.7e-12 Score=85.44 Aligned_cols=49 Identities=31% Similarity=0.682 Sum_probs=40.5
Q ss_pred cCCCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhc-CCCCCCCCC
Q 025685 37 MGFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY-VRNPTCPQC 88 (249)
Q Consensus 37 ~~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~-~~~~~CP~C 88 (249)
.....+.+.|+||++. +.+|+ +++|||+||..||..|+.. .....||+|
T Consensus 14 ~~~~~~~~~C~IC~~~--~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDI--LQKPV-TIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSB--CSSCE-ECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCch--hCCeE-EeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3445678999999999 78888 5599999999999999973 245689998
No 37
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=3.2e-12 Score=88.91 Aligned_cols=50 Identities=26% Similarity=0.692 Sum_probs=41.4
Q ss_pred CCCcccccccccCccCCCc------eEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 40 GNHGGVCAICLDKTVLQET------ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~p------v~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
..+...|+||++.| .++ +.+++|||.||..||..|+.. ...||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~--~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGY--SEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCH--HHHTTTTCCEEECSSSCEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCCcccCccc--cccccccCCeEeCCCCChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 45678899999994 444 247899999999999999983 678999999875
No 38
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.23 E-value=3e-12 Score=89.81 Aligned_cols=51 Identities=25% Similarity=0.701 Sum_probs=42.4
Q ss_pred CCCcccccccccCccCCCc------eEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 40 GNHGGVCAICLDKTVLQET------ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~p------v~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
..+.+.|+||++. +.+| +.+++|||.||..||..|+. ....||+||..+..
T Consensus 7 ~~~~~~C~IC~~~--~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDG--YSEIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCB--HHHHHTTTCCEEECTTSCEEEHHHHHHHHH--HCSBCTTTCCBCCC
T ss_pred CCCCCCCcccChh--hhccccccCCeEeCCCCChHhHHHHHHHHH--cCCCCCCCCCccCh
Confidence 3567889999999 4444 25789999999999999998 45789999999875
No 39
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=7.3e-12 Score=91.30 Aligned_cols=54 Identities=20% Similarity=0.513 Sum_probs=43.4
Q ss_pred CCCCCcccccccccCccCCC----ceEecCCCCcccHHHHHHHHhcC-CCCCCCCCcccCcc
Q 025685 38 GFGNHGGVCAICLDKTVLQE----TALVKGCEHAYCATCILRWASYV-RNPTCPQCKHPFEF 94 (249)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~----pv~~l~CgH~FC~~CI~~w~~~~-~~~~CP~CR~~~~~ 94 (249)
....+.+.|+||++. +.+ |+ +++|||.||..||..|+... ....||+||..+..
T Consensus 10 ~~~~~~~~C~IC~~~--~~~~~~~~~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 10 DALREVLECPICMES--FTEEQLRPK-LLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCSCCBCTTTCCB--CCTTSSCEE-ECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhccCCCCCccCCcc--ccccCCCeE-ECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 344577899999999 444 66 67999999999999999842 24789999998754
No 40
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.22 E-value=8.2e-12 Score=83.26 Aligned_cols=51 Identities=27% Similarity=0.503 Sum_probs=41.2
Q ss_pred CCcccccccccCccC-CCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 41 NHGGVCAICLDKTVL-QETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~-~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
.....|+||++.|.. ..++.+++|||.||..||..|+.. ...||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE--GYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH--TCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc--CCcCCCCCCcCC
Confidence 356789999999522 234568899999999999999984 488999999874
No 41
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=8.1e-12 Score=86.44 Aligned_cols=50 Identities=24% Similarity=0.624 Sum_probs=40.8
Q ss_pred Cccccccccc-CccCCCce---EecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 42 HGGVCAICLD-KTVLQETA---LVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~-~~~~~~pv---~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
+...|+||++ . +.+|. .+++|||.||..||..|+.. ....||+||.++..
T Consensus 2 ~~~~C~IC~~~~--~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTK--YRNPSLKLMVNVCGHTLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHH--HHCSSCCEEECTTCCCEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCc--cCCCccCeecCCCCCHhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 4678999999 7 45553 36799999999999999763 56789999999865
No 42
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.20 E-value=4.5e-12 Score=86.87 Aligned_cols=49 Identities=27% Similarity=0.711 Sum_probs=40.9
Q ss_pred CcccccccccCccCCCc------eEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 42 HGGVCAICLDKTVLQET------ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~p------v~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
+.+.|+||++. +.+| +.+++|||.||..||..|+.. ...||+||..+..
T Consensus 2 ~~~~C~IC~~~--~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDG--YSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCB--HHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred CCCCCCccChh--hhCccccCCCEEeCCCCCchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence 46789999999 4444 247799999999999999983 6789999999864
No 43
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.9e-11 Score=82.28 Aligned_cols=48 Identities=33% Similarity=0.839 Sum_probs=39.7
Q ss_pred CCCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhc-CCCCCCCCC
Q 025685 38 GFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY-VRNPTCPQC 88 (249)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~-~~~~~CP~C 88 (249)
....+.+.|+||++. +.+|+ +++|||.||..||..|+.. .....||+|
T Consensus 10 ~~~~~~~~C~IC~~~--~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEY--LKEPV-IIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCB--CSSCC-CCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcc--cCccE-eCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 344577899999999 77887 5799999999999999763 256789998
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.18 E-value=1.6e-11 Score=94.57 Aligned_cols=49 Identities=31% Similarity=0.712 Sum_probs=43.0
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
+.+.|+||++. +.+|+ +++|||.||..||..|+.. ....||+||.++..
T Consensus 22 ~~~~C~IC~~~--~~~p~-~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHI--LADPV-ETSCKHLFCRICILRCLKV-MGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSB--CSSEE-ECTTSCEEEHHHHHHHHHH-TCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcH--hcCcE-EcCCCCcccHHHHHHHHhH-CcCcCCCCCCCCCH
Confidence 45789999999 78898 4799999999999999984 36789999999876
No 45
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.15 E-value=3.2e-11 Score=87.11 Aligned_cols=53 Identities=21% Similarity=0.568 Sum_probs=41.9
Q ss_pred CCCcccccccccCccCCCceEecC--CCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 40 GNHGGVCAICLDKTVLQETALVKG--CEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~--CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
..+.+.||||++.+...++. +++ |||.||..||..++.. ....||.||.++..
T Consensus 8 ~~~~~~CpICle~~~~~d~~-~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDIN-FFPCTCGYQICRFCWHRIRTD-ENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTT-CCSSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCcccccc-ccccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 35678999999985334444 445 9999999999998753 56889999999864
No 46
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=9e-12 Score=87.31 Aligned_cols=50 Identities=28% Similarity=0.793 Sum_probs=42.5
Q ss_pred CCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
...+...|+||++. +.+ + +++|||.||..||..|+. ....||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~--~~~-~-~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 11 QLTDEEECCICMDG--RAD-L-ILPCAHSFCQKCIDKWSD--RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCSSSCCS--CCS-E-EETTTEEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred cCCCCCCCeeCCcC--ccC-c-ccCCCCcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence 34567899999999 555 4 779999999999999998 57889999998865
No 47
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.14 E-value=2.5e-11 Score=105.98 Aligned_cols=69 Identities=14% Similarity=0.262 Sum_probs=58.6
Q ss_pred CCCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCC--CcccCcc--cccchhhhhHHHHh
Q 025685 38 GFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQ--CKHPFEF--LHVHRSLDGSISDY 108 (249)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~--CR~~~~~--~~~~~~l~~~i~~~ 108 (249)
......+.||||++. +.+||....|||+||..||..|+...+...||+ |+..+.. +.+|..+..++..+
T Consensus 176 ~~~~~el~CPIcl~~--f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 176 EGGKIELTCPITCKP--YEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIA 248 (267)
T ss_dssp CSSBCCSBCTTTSSB--CSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHH
T ss_pred cCCceeeECcCccCc--ccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHH
Confidence 345678999999999 899997679999999999999987544578999 9998876 88898888888763
No 48
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=3.8e-11 Score=87.02 Aligned_cols=52 Identities=23% Similarity=0.632 Sum_probs=39.6
Q ss_pred CCcccccccccCccC------------CCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 41 NHGGVCAICLDKTVL------------QETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~------------~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.++..|+||++.|.. ..++.+++|+|.||..||..|+. ...+||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK--QNNRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT--TCCBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH--hCCCCCCcCCCcch
Confidence 356779999998421 11444556999999999999998 45799999998753
No 49
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.11 E-value=4e-11 Score=91.85 Aligned_cols=53 Identities=25% Similarity=0.552 Sum_probs=40.5
Q ss_pred CcccccccccCccCC---------------CceEecCCCCcccHHHHHHHHhc---CCCCCCCCCcccCcc
Q 025685 42 HGGVCAICLDKTVLQ---------------ETALVKGCEHAYCATCILRWASY---VRNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~---------------~pv~~l~CgH~FC~~CI~~w~~~---~~~~~CP~CR~~~~~ 94 (249)
.+..|+||++.|... ..+.+++|+|.||..||..|+.. ....+||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 456899999995221 12236899999999999999953 246799999998865
No 50
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.08 E-value=7.1e-11 Score=96.81 Aligned_cols=66 Identities=23% Similarity=0.345 Sum_probs=51.5
Q ss_pred ccCCCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc--cccchhhhhHH
Q 025685 36 EMGFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSI 105 (249)
Q Consensus 36 ~~~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~--~~~~~~l~~~i 105 (249)
+.....+.+.|+||++. +.+|+ .++|||+||..||..|+.. ....||+||.++.. +.++..+...+
T Consensus 11 ~~~~~~~~~~C~IC~~~--~~~pv-~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~~~~~~~i 78 (170)
T 3hcs_A 11 FDPPLESKYECPICLMA--LREAV-QTPCGHRFCKACIIKSIRD-AGHKCPVDNEILLENQLFPDNFAKREI 78 (170)
T ss_dssp ESSCCCGGGBCTTTCSB--CSSEE-ECTTSCEEEHHHHHHHHHH-HCSBCTTTCCBCCGGGCEECHHHHHHH
T ss_pred hccCCCCCCCCCCCChh--hcCcE-ECCCCCHHHHHHHHHHHHh-CCCCCCCCccCcchhhhhhhHHHHHHH
Confidence 45566788999999999 88898 4699999999999999974 34589999999876 44444444333
No 51
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.07 E-value=1.1e-10 Score=89.11 Aligned_cols=50 Identities=30% Similarity=0.567 Sum_probs=40.6
Q ss_pred CcccccccccCccCC---------------CceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 42 HGGVCAICLDKTVLQ---------------ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~---------------~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
+...|+||++.|... .++.+++|+|.||..||..|+. ...+||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~--~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK--TRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT--TCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH--cCCcCcCCCCcce
Confidence 457799999995322 1356789999999999999998 5788999999875
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.04 E-value=7.4e-11 Score=91.88 Aligned_cols=50 Identities=26% Similarity=0.726 Sum_probs=42.4
Q ss_pred CCcccccccccCccCCCc------eEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 41 NHGGVCAICLDKTVLQET------ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~p------v~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.+.+.|+||++. +.+| +.+++|||+||..||..|+. ...+||+||..+..
T Consensus 5 ~~~~~C~IC~~~--~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDG--YSEIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCB--HHHHHHTTCCEEEETTCCEEEHHHHHHHHT--TCSBCTTTCCBCTT
T ss_pred CCCCCCcccChh--hhCccccccCeEecCCCChhhHHHHHHHHH--hCCCCCCCCCcCcc
Confidence 467899999999 5555 24779999999999999998 46789999999875
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.03 E-value=4.7e-11 Score=95.57 Aligned_cols=51 Identities=24% Similarity=0.481 Sum_probs=43.5
Q ss_pred CCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
...+.+.|+||++. +.+|+ .++|||.||..||..|+.. ....||+||.++.
T Consensus 27 ~l~~~~~C~IC~~~--~~~pv-~~~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNV--LRRPF-QAQCGHRYCSFCLASILSS-GPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSB--CSSEE-ECTTSCEEEHHHHHHHGGG-SCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChh--hcCcE-ECCCCCccCHHHHHHHHhc-CCCCCCCCCCccc
Confidence 44678999999999 88998 5699999999999999974 4568999999753
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=7.1e-11 Score=79.61 Aligned_cols=46 Identities=22% Similarity=0.553 Sum_probs=38.7
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.+.+.|+||++. +.+|+ +++|||+||..||..| ...||+||..+..
T Consensus 4 ~~~~~C~IC~~~--~~~p~-~l~CgH~fC~~Ci~~~-----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAE--AKCPK-LLPCLHTLCSGCLEAS-----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSS--CBCCS-CSTTSCCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCc--cCCeE-EcCCCCcccHHHHccC-----CCCCCcCCcEeec
Confidence 467889999999 77887 6799999999998763 4579999998763
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.96 E-value=1.5e-10 Score=82.47 Aligned_cols=44 Identities=27% Similarity=0.686 Sum_probs=38.2
Q ss_pred CcccccccccCccCCCceEecCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHA-YCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~-FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
+.+.|+||++. +.+++ ++||||. ||..|+..| ..||+||.++..
T Consensus 23 ~~~~C~iC~~~--~~~~~-~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDR--NIAIV-FVPCGHLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSS--BCCEE-EETTCCBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCC--CCCEE-EcCCCChhHHHHhhhcC------ccCCCcCcCccC
Confidence 45679999999 78888 5699999 999999877 569999999875
No 56
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=5.8e-10 Score=80.86 Aligned_cols=54 Identities=20% Similarity=0.511 Sum_probs=44.3
Q ss_pred CCCcccccccccCccCCCceEecCCC-----CcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCE-----HAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~Cg-----H~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
..+...|.||++.+...+++ ++||. |.||..||.+|+......+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34567899999986555676 68996 99999999999986555799999999864
No 57
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.92 E-value=5.9e-10 Score=77.23 Aligned_cols=50 Identities=30% Similarity=0.693 Sum_probs=41.5
Q ss_pred CCcccccccccCccCCCceEe-cCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 41 NHGGVCAICLDKTVLQETALV-KGCEHA-YCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~-l~CgH~-FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
++...|+||++. ..+++++ +||||. ||..|+..|.. ....||+||.++..
T Consensus 6 ~~~~~C~IC~~~--~~~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGR--PKNGCIVHGKTGHLMACFTCAKKLKK--RNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSS--CSCEEEEETTEEEEEECHHHHHHHHH--TTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCC--CCCEEEECCCCCChhhHHHHHHHHHH--cCCcCCCcCcchhc
Confidence 355679999999 7777732 399999 89999999997 46789999999865
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.88 E-value=1e-09 Score=100.98 Aligned_cols=50 Identities=22% Similarity=0.713 Sum_probs=43.0
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.....|+||++. +.+|+ +++|||.||..||..|+.. ....||+||.++..
T Consensus 330 ~~~~~C~ICle~--~~~pv-~lpCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 330 STFQLCKICAEN--DKDVK-IEPCGHLMCTSCLTSWQES-EGQGCPFCRCEIKG 379 (389)
T ss_dssp TSSSBCTTTSSS--BCCEE-EETTCCEECHHHHHHHHHH-TCSBCTTTCCBCCE
T ss_pred CCCCCCCccCcC--CCCeE-EeCCCChhhHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 345799999999 77887 6799999999999999973 46789999999875
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.87 E-value=9.7e-10 Score=75.87 Aligned_cols=49 Identities=20% Similarity=0.533 Sum_probs=40.3
Q ss_pred CcccccccccCccCCCceE-ecCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 42 HGGVCAICLDKTVLQETAL-VKGCEHA-YCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~-~l~CgH~-FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
....|+||++. ..++++ .+||||. ||..|+..|.. ....||+||.++..
T Consensus 6 ~~~~C~IC~~~--~~~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKR--PRDGNIIHGRTGHLVTCFHCARRLKK--AGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSS--BSCEEEEETTEEEEEECHHHHHHHHH--TTCBCTTTCCBCCE
T ss_pred cCCCCcccCCc--CCCeEEEecCCCCHhHHHHHHHHHHH--hCCcCCCcCchhhc
Confidence 45679999998 677762 2499998 99999999887 35789999999865
No 60
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.87 E-value=2.8e-10 Score=88.35 Aligned_cols=50 Identities=30% Similarity=0.567 Sum_probs=1.0
Q ss_pred CcccccccccCccCC---------------CceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 42 HGGVCAICLDKTVLQ---------------ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~---------------~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
....|+||++.|... .++..++|+|.||..||..|+. ...+||+||.++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~--~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK--TRQVCPLDNREWE 111 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH--cCCcCCCCCCeee
Confidence 456899999995321 1333469999999999999998 4778999999864
No 61
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.82 E-value=1.2e-09 Score=80.99 Aligned_cols=49 Identities=18% Similarity=0.696 Sum_probs=37.6
Q ss_pred CCcccccccccCccCCCce--EecCCCCcccHHHHHHHHhcC------CCCCCCC--Cccc
Q 025685 41 NHGGVCAICLDKTVLQETA--LVKGCEHAYCATCILRWASYV------RNPTCPQ--CKHP 91 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv--~~l~CgH~FC~~CI~~w~~~~------~~~~CP~--CR~~ 91 (249)
.+.++|+||++. +..+. .+.+|||.||..||..|+... ....||. |+..
T Consensus 3 ~~~~~C~IC~~~--~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGE--YPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCC--CBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcc--cccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 356889999999 44443 335899999999999987631 2358999 9988
No 62
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.82 E-value=1.1e-09 Score=85.10 Aligned_cols=51 Identities=27% Similarity=0.755 Sum_probs=42.2
Q ss_pred CCCcccccccccCccCCCc------eEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 40 GNHGGVCAICLDKTVLQET------ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~p------v~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
..+...|+||++. +.++ +..++|||.||..||.+|+. ...+||+||..+..
T Consensus 69 ~~~~~~C~iC~~~--~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDG--YSEIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCB--HHHHHHTTCCEEEETTSBEEEHHHHHHHHH--HCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCc--cccccccCcceEeCCCCChhhHHHHHHHHH--cCCCCCCCCCcCCh
Confidence 4577889999998 4443 24779999999999999998 46789999999864
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=1.1e-09 Score=77.99 Aligned_cols=44 Identities=27% Similarity=0.689 Sum_probs=37.1
Q ss_pred CcccccccccCccCCCceEecCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHA-YCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~-FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
+...|+||++. +.+|+ ++||||. ||..|+.. ...||+||.++..
T Consensus 24 ~~~~C~IC~~~--~~~~~-~~pCgH~~~C~~C~~~------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDR--NIAIV-FVPCGHLVTCKQCAEA------VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSS--CCCBC-CSSSCCCCBCHHHHHH------CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCC--CCCEE-EecCCCHHHHHHHhhC------CCCCccCCceecC
Confidence 34679999999 78887 6799999 99999953 3569999999875
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.80 E-value=9.6e-10 Score=79.38 Aligned_cols=43 Identities=23% Similarity=0.746 Sum_probs=36.9
Q ss_pred cccccccccCccCCCceEecCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 43 GGVCAICLDKTVLQETALVKGCEHA-YCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~l~CgH~-FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
...|+||++. ..+++ ++||||. ||..|+..| ..||+||.++..
T Consensus 18 ~~~C~IC~~~--~~~~v-~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEE--EINST-FCPCGHTVCCESCAAQL------QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSS--BCCEE-EETTCBCCBCHHHHTTC------SBCTTTCCBCCE
T ss_pred CCEeEEeCcc--cCcEE-EECCCCHHHHHHHHHhc------CcCCCCCchhhC
Confidence 4679999999 77887 6699999 999999765 369999999976
No 65
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=1.6e-08 Score=72.17 Aligned_cols=53 Identities=17% Similarity=0.515 Sum_probs=41.6
Q ss_pred CCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.+....|+||.+.|. .-.....|+|.||..||.+|+......+||+|+..+..
T Consensus 12 ~~~i~~C~IC~~~i~--~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 12 PDAVKICNICHSLLI--QGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSSCBCSSSCCBCS--SSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred cCCCCcCcchhhHcc--cCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 345578999999963 23334599999999999999985445899999998764
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=8.8e-09 Score=72.18 Aligned_cols=46 Identities=20% Similarity=0.579 Sum_probs=38.7
Q ss_pred CCCcccccccccCccCCCceEecCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCEHA-YCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~CgH~-FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
..+...|+||++. ..+++ ++||||. ||..|+.. ...||+||.++..
T Consensus 12 ~~~~~~C~IC~~~--~~~~v-~~pCgH~~~C~~C~~~------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNG--TVNWV-LLPCRHTCLCDGCVKY------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSS--CCCCE-ETTTTBCCSCTTHHHH------CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcC--CCCEE-EECCCChhhhHHHHhc------CCCCCCCCcchhc
Confidence 3457889999999 77776 7899999 99999973 3579999999876
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.64 E-value=1.1e-08 Score=70.19 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=41.0
Q ss_pred cccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.+.|+||++. +.+|+...+|||+|+..||..|+.. +.+||+++.++..
T Consensus 3 ~~~CpIs~~~--m~dPV~~~~sG~~yer~~I~~~l~~--~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKV--PRRPVLSPKSRTIFEKSLLEQYVKD--TGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSC--CSSEEEETTTTEEEEHHHHHHHHHH--HSBCTTTCCBCCG
T ss_pred eEEecCCCCC--CCCCEEeCCCCcEEcHHHHHHHHHh--CCCCcCCcCCCCh
Confidence 4789999999 8999954499999999999999984 4569999998865
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.56 E-value=1.4e-08 Score=92.52 Aligned_cols=44 Identities=25% Similarity=0.637 Sum_probs=38.5
Q ss_pred CcccccccccCccCCCceEecCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHA-YCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~-FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
+...|+||++. +.+|+ ++||||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~--~~~~v-~lpCgH~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDK--EVSVV-FIPCGHLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSS--BCCEE-EETTCCEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred CCCCCCccCCc--CCceE-EcCCCChhHhHHHHhcC------CcCCCCCCCccC
Confidence 56889999999 78888 5699999 999999877 469999999875
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.43 E-value=1.4e-07 Score=64.50 Aligned_cols=50 Identities=24% Similarity=0.628 Sum_probs=41.0
Q ss_pred CCcccccccccCccCCCceEecCCCC-----cccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEH-----AYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH-----~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
.+...|.||++. ..++. ++||.+ .||..||.+|+..+++.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~--~~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEE--LGNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEE--CSCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecC--CCCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 456789999998 56665 678654 899999999998656789999999874
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.17 E-value=1.4e-06 Score=65.02 Aligned_cols=47 Identities=21% Similarity=0.613 Sum_probs=39.2
Q ss_pred cccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 45 ~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.|++|--. ...-..++||.|.||.+|+..|... ...+||.|+.++..
T Consensus 3 fC~~C~~P--i~iygRmIPCkHvFCydCa~~~~~~-~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLP--IKVYGRMIPCKHVFCYDCAILHEKK-GDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSB--CSEEEEEETTCCEEEHHHHHHHHHT-TCCBCTTTCCBCSE
T ss_pred ecCccCCC--eEEEeeeccccccHHHHHHHHHHhc-cCCCCcCcCCeeee
Confidence 58888877 4445567899999999999999863 67899999999987
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.07 E-value=7.3e-07 Score=80.55 Aligned_cols=53 Identities=23% Similarity=0.456 Sum_probs=38.4
Q ss_pred CCcccccccccCccCC--CceE---ecCCCCcccHHHHHHHHhcCC---------CCCCCCCcccCc
Q 025685 41 NHGGVCAICLDKTVLQ--ETAL---VKGCEHAYCATCILRWASYVR---------NPTCPQCKHPFE 93 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~--~pv~---~l~CgH~FC~~CI~~w~~~~~---------~~~CP~CR~~~~ 93 (249)
.....|+||+..+... -|.. ...|+|.||..||..|+.... ...||.||.++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 4567899999985221 1211 248999999999999997311 147999999875
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.48 E-value=9e-05 Score=63.91 Aligned_cols=51 Identities=18% Similarity=0.499 Sum_probs=40.7
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
....|.||.+.+ ..-.....|+|.||..|+..|+...+...||.|+..+..
T Consensus 179 ~i~~C~iC~~iv--~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLL--IQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBC--SSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHH--hCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 467899999995 333444569999999999999985456799999998764
No 73
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.0013 Score=59.84 Aligned_cols=51 Identities=18% Similarity=0.406 Sum_probs=39.3
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHH--HHHHHhcCCCCCCCCCcccCcc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATC--ILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~C--I~~w~~~~~~~~CP~CR~~~~~ 94 (249)
-.+.|||-+.. +..|+....|.|.-|++- +..+........||+|...+..
T Consensus 248 vSL~CPlS~~r--i~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 248 MSLQCPISYTR--MKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp EESBCTTTSSB--CSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred EeecCCCcccc--ccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 45889999888 899999999999977765 3333333567899999888754
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.57 E-value=0.0027 Score=64.21 Aligned_cols=72 Identities=10% Similarity=0.075 Sum_probs=62.0
Q ss_pred cCCCCCcccccccccCccCCCceEecCCC-CcccHHHHHHHHhcCCCCCCCCCcccCcc--cccchhhhhHHHHhhhhHH
Q 025685 37 MGFGNHGGVCAICLDKTVLQETALVKGCE-HAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMFEES 113 (249)
Q Consensus 37 ~~~~~~~~~C~ICl~~~~~~~pv~~l~Cg-H~FC~~CI~~w~~~~~~~~CP~CR~~~~~--~~~~~~l~~~i~~~~~ees 113 (249)
.....+.+.|||-+++ +.+|| ++|-| ++|=..+|.+|+. ...+||.-|.++.. +.+|..+...|..+..+..
T Consensus 885 ~~~iP~~F~cPIs~~l--M~DPV-ilpsG~~TydR~~I~~wl~--~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTI--MKDPV-ILPASKMNIDRSTIKAHLL--SDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp HCCSCGGGBCTTTCSB--CSSEE-ECTTTCCEEEHHHHHHHHT--TCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred ccCCcHHhCCcchhhH--HhCCe-EcCCCCEEECHHHHHHHHh--cCCCCCCCCCCCCcccccccHHHHHHHHHHHHHHH
Confidence 3556789999999999 99999 66887 6999999999998 36789999999986 8899999999999765543
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.02 E-value=0.0037 Score=46.02 Aligned_cols=34 Identities=24% Similarity=0.592 Sum_probs=25.9
Q ss_pred CcccccccccCccCCCceEe-cCCCCcccHHHHHHH
Q 025685 42 HGGVCAICLDKTVLQETALV-KGCEHAYCATCILRW 76 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~-l~CgH~FC~~CI~~w 76 (249)
+++.|+||.+.+ ...++.. +.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~-~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDP-AQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSS-CCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCC-CCCceEECCcCChHHhHHHCHHH
Confidence 457899999752 3455532 899999999999973
No 76
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=92.50 E-value=0.15 Score=46.23 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=39.3
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHH--HHHHhcCCCCCCCCCcccCcc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCI--LRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI--~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.-.+.|||-+.. +..|+....|.|.-|++-. ..+........||+|...+..
T Consensus 213 ~vSL~CPlS~~r--i~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 213 RVSLMCPLGKMR--LTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp EEESBCTTTCSB--CSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred EEeeeCCCccce--eccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 346789999888 8899999999999776542 223333467899999998764
No 77
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.65 E-value=0.089 Score=38.56 Aligned_cols=47 Identities=28% Similarity=0.558 Sum_probs=35.5
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
.-+.|..|... .. ..+.-..|-+|..|+..++. .+..||+|+.++..
T Consensus 27 G~~nCKsCWf~--~k--~LV~C~dHYLCl~CLtlmL~--~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 27 GPQFCKSCWFE--NK--GLVECNNHYLCLNCLTLLLS--VSNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCCSSCSC--CS--SEEECSSCEEEHHHHHHTCS--SSSEETTTTEECCC
T ss_pred CcccChhhccc--cC--CeeeecchhhHHHHHHHHHh--hccCCcccCCcCCc
Confidence 34669999877 33 32434468999999998887 56779999999875
No 78
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=88.67 E-value=0.47 Score=33.74 Aligned_cols=36 Identities=28% Similarity=0.695 Sum_probs=27.1
Q ss_pred CCCcccccccccCccCCCceEecCC----CCcccHHHHHHHHh
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGC----EHAYCATCILRWAS 78 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~C----gH~FC~~CI~~w~~ 78 (249)
.+..+.|.+|.+. +.+.-++ .| .|.||+.|-.....
T Consensus 12 ~~a~l~CtlC~er--LEdtHFV-QCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 12 NSGPLCCTICHER--LEDTHFV-QCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp SCCSCCCSSSCSC--CSSTTSE-ECSSCSSCEECHHHHHHHHH
T ss_pred CCCeeEeecchhh--hccCcee-eCCCccCCeeeccccHHHHH
Confidence 3567889999999 5555433 45 69999999888665
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=87.37 E-value=0.17 Score=35.06 Aligned_cols=53 Identities=21% Similarity=0.338 Sum_probs=34.7
Q ss_pred CCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhc--CCCCCCCCCcccC
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY--VRNPTCPQCKHPF 92 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~--~~~~~CP~CR~~~ 92 (249)
.++...|+||........-+.--.|...||..|+..-... .....||.|...+
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 3456779999887311123344578889999999653332 1467899997654
No 80
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=86.50 E-value=0.75 Score=31.29 Aligned_cols=48 Identities=19% Similarity=0.436 Sum_probs=35.0
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhc--CCCCCCCCCcccC
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY--VRNPTCPQCKHPF 92 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~--~~~~~CP~CR~~~ 92 (249)
....|.||.+. .+-+.--.|...||..|+...+.. .+...||.|....
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 45679999875 344555689999999999766542 2457899997643
No 81
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=85.05 E-value=1.7 Score=31.38 Aligned_cols=52 Identities=27% Similarity=0.584 Sum_probs=36.2
Q ss_pred CCcccccccccCccCCCc--eE--ecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 41 NHGGVCAICLDKTVLQET--AL--VKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~p--v~--~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
.....|.||-+.+.+... ++ .-.|+-..|..|+.--.. .++..||.|+..+.
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk-eG~q~CpqCktrYk 69 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR-EGTQNCPQCKTRYK 69 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH-TSCSSCTTTCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh-ccCccccccCCccc
Confidence 356789999998633211 21 235777889999875444 37889999988775
No 82
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=82.69 E-value=1.8 Score=34.07 Aligned_cols=50 Identities=22% Similarity=0.436 Sum_probs=36.6
Q ss_pred CCCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHh---------cCCCCCCCCCcc
Q 025685 38 GFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS---------YVRNPTCPQCKH 90 (249)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~---------~~~~~~CP~CR~ 90 (249)
..+..+..|.||.+- .+-+.--.|-..||..||.+-+. ..+...||.|..
T Consensus 58 d~Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CTTSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred cCCCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 345567889999986 34344468899999999986442 246789999964
No 83
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=80.66 E-value=0.95 Score=30.11 Aligned_cols=48 Identities=25% Similarity=0.573 Sum_probs=34.1
Q ss_pred CCCcccccccccCccCCCceEecCCCCcccHHHHHHHHh--cCCCCCCCCCcc
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS--YVRNPTCPQCKH 90 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~--~~~~~~CP~CR~ 90 (249)
..+...|.||... .+-+.--.|...||..|+..-+. ..+...||.|..
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3466789999875 34444567888999999986332 235678999964
No 84
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=80.59 E-value=0.36 Score=32.34 Aligned_cols=52 Identities=17% Similarity=0.435 Sum_probs=34.2
Q ss_pred CCCcccccccccCccC-CCceEecCCCCcccHHHHHHHHh---cCCCCCCCCCccc
Q 025685 40 GNHGGVCAICLDKTVL-QETALVKGCEHAYCATCILRWAS---YVRNPTCPQCKHP 91 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~-~~pv~~l~CgH~FC~~CI~~w~~---~~~~~~CP~CR~~ 91 (249)
.++...|+||...+.. ..-|.--.|...||..|+.--.. ....+.||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3567789999987421 22344457888999999854221 1246789999654
No 85
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=77.18 E-value=1.5 Score=35.79 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=34.0
Q ss_pred cccccccccCccCCC----ceEecCCCCcccHHHHHHH------Hh---cCCCCCCCCCcccCcc
Q 025685 43 GGVCAICLDKTVLQE----TALVKGCEHAYCATCILRW------AS---YVRNPTCPQCKHPFEF 94 (249)
Q Consensus 43 ~~~C~ICl~~~~~~~----pv~~l~CgH~FC~~CI~~w------~~---~~~~~~CP~CR~~~~~ 94 (249)
+..||||...+...+ -+..-.|...||..|+.-- +. ......||.|+.....
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 356999998864333 2344578899999998421 10 0026899999886553
No 86
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=76.28 E-value=6 Score=30.44 Aligned_cols=50 Identities=22% Similarity=0.443 Sum_probs=34.6
Q ss_pred CCCCCcccccccccCccCCCceEecCCCCcccHHHHHHHH------h---cCCCCCCCCCcc
Q 025685 38 GFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWA------S---YVRNPTCPQCKH 90 (249)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~------~---~~~~~~CP~CR~ 90 (249)
+.+..+..|.||.+- .+-+.--.|-..||..||.+-+ . ......|+.|..
T Consensus 52 d~Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CTTSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345566779999976 2323345788999999998742 1 235689999955
No 87
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=74.97 E-value=0.96 Score=36.64 Aligned_cols=48 Identities=17% Similarity=0.403 Sum_probs=34.0
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhc--CCCCCCCCCcccC
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY--VRNPTCPQCKHPF 92 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~--~~~~~CP~CR~~~ 92 (249)
++..|.+|.+. .+-+..-.|...||..|+.+-+.. .+...||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45669999875 344445678899999998664431 2457899998754
No 88
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=73.80 E-value=1.4 Score=32.12 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=30.8
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHh-cCCCCCCCCCcc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS-YVRNPTCPQCKH 90 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~-~~~~~~CP~CR~ 90 (249)
.+...| ||........-+.--.|...||..|+..-.. ......||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 445667 8876622223344467888999999865222 123579999964
No 89
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=73.66 E-value=0.81 Score=37.90 Aligned_cols=49 Identities=16% Similarity=0.344 Sum_probs=34.3
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHh--cCCCCCCCCCcccC
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS--YVRNPTCPQCKHPF 92 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~--~~~~~~CP~CR~~~ 92 (249)
.++..|.+|... .+-+..-.|...||..|+.+-+. ..+...||.|+..-
T Consensus 5 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 455679999876 33344467889999999866443 13567899998754
No 90
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=73.54 E-value=1.5 Score=32.49 Aligned_cols=50 Identities=26% Similarity=0.567 Sum_probs=33.4
Q ss_pred CCCcccccccccCccCCCceEecCCCCcccHHHHHHHHhc--CCCCCCCCCc
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY--VRNPTCPQCK 89 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~--~~~~~CP~CR 89 (249)
..++..|.||.+.-.+.+-+.-..|+..||..|+...... .....||.|+
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4567789999887212222445789999999999765431 2456677764
No 91
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=71.40 E-value=1.2 Score=29.62 Aligned_cols=49 Identities=24% Similarity=0.523 Sum_probs=33.4
Q ss_pred CCCcccccccccCccCCCceEecCCCCcccHHHHHHHHh--cCCCCCCCCCccc
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS--YVRNPTCPQCKHP 91 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~--~~~~~~CP~CR~~ 91 (249)
..+...|.||.+. .+-+.--.|...||..|+..-+. ..+...||.|...
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4466779999875 23333457888999999975332 1245789999664
No 92
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=71.03 E-value=2.9 Score=27.84 Aligned_cols=43 Identities=21% Similarity=0.554 Sum_probs=28.1
Q ss_pred ccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCC
Q 025685 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQC 88 (249)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~C 88 (249)
..|-.|...|.......-..|.+.||.+|= .++. .....||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD-~fiH-e~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCD-VFVH-DSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHH-HTTT-TTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchh-HHHH-hhccCCcCC
Confidence 358889888421111335689999999993 2332 356689988
No 93
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=70.93 E-value=6.5 Score=28.10 Aligned_cols=48 Identities=17% Similarity=0.408 Sum_probs=31.2
Q ss_pred CCcccccccccCccCCCc-eEecCCCCcccHHHHHHHHh--------------cCCCCCCCCCcc
Q 025685 41 NHGGVCAICLDKTVLQET-ALVKGCEHAYCATCILRWAS--------------YVRNPTCPQCKH 90 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~p-v~~l~CgH~FC~~CI~~w~~--------------~~~~~~CP~CR~ 90 (249)
..+..|.||-.. .... ....-|+-.||..|+.+.-. .....+||.|..
T Consensus 13 ~~D~~C~VC~~~--t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 13 VNDEMCDVCEVW--TAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCSCCCTTTCCC--CSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCcccCccccc--cccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 366789999854 2211 11235899999999999621 123468999943
No 94
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=70.79 E-value=1.7 Score=31.50 Aligned_cols=51 Identities=18% Similarity=0.357 Sum_probs=30.4
Q ss_pred CCCcccccccccCccCCCceEecC--CC-CcccHHHHHHHHhcCCCCCCCCCcccC
Q 025685 40 GNHGGVCAICLDKTVLQETALVKG--CE-HAYCATCILRWASYVRNPTCPQCKHPF 92 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~--Cg-H~FC~~CI~~w~~~~~~~~CP~CR~~~ 92 (249)
.++...| ||.... ...-+.--. |. ..||..|+.--........||.|+...
T Consensus 33 ~~e~~yC-iC~~~~-~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 33 PNEPTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp SCCCBCS-TTCCBC-CSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCCCcEE-ECCCCC-CCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 3466778 999862 122221223 54 579999996211123567899997643
No 95
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=70.51 E-value=2.4 Score=29.51 Aligned_cols=53 Identities=15% Similarity=0.275 Sum_probs=33.8
Q ss_pred CCCcccccccccCcc-CCCceEecCCCCcccHHHHHHHHh---cCCCCCCCCCcccCc
Q 025685 40 GNHGGVCAICLDKTV-LQETALVKGCEHAYCATCILRWAS---YVRNPTCPQCKHPFE 93 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~-~~~pv~~l~CgH~FC~~CI~~w~~---~~~~~~CP~CR~~~~ 93 (249)
..+...| ||...+. ...-|.--.|...||..|+.--.. ....+.||.|+....
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 3455667 9988742 123344467888999999953111 125689999987643
No 96
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=69.74 E-value=1.5 Score=30.24 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=34.6
Q ss_pred CCCCCcccccccccCc--cCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcc
Q 025685 38 GFGNHGGVCAICLDKT--VLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90 (249)
Q Consensus 38 ~~~~~~~~C~ICl~~~--~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~ 90 (249)
....+...|.||...- ....-+.--.|.-.||..|+..-....+...||.|..
T Consensus 11 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 11 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred cCCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3456778899998751 0123333467888999999975333335678988854
No 97
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=69.66 E-value=1.9 Score=29.60 Aligned_cols=51 Identities=18% Similarity=0.357 Sum_probs=30.4
Q ss_pred CCCcccccccccCccCCCceEecC--CC-CcccHHHHHHHHhcCCCCCCCCCcccC
Q 025685 40 GNHGGVCAICLDKTVLQETALVKG--CE-HAYCATCILRWASYVRNPTCPQCKHPF 92 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~--Cg-H~FC~~CI~~w~~~~~~~~CP~CR~~~ 92 (249)
.++...| ||.... ...-+.--. |. ..||..|+.--....+...||.|+...
T Consensus 13 ~~~~~~C-~C~~~~-~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TTSCCCS-TTCCCS-CSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CCCCCEE-ECCCCC-CCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 3456778 898862 122221123 55 589999997211123567899997643
No 98
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=67.98 E-value=4.1 Score=27.70 Aligned_cols=33 Identities=30% Similarity=0.619 Sum_probs=25.4
Q ss_pred CCcccccccccCccCCCceEecCC-CCcccHHHHHHHH
Q 025685 41 NHGGVCAICLDKTVLQETALVKGC-EHAYCATCILRWA 77 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~C-gH~FC~~CI~~w~ 77 (249)
.+..-|.||.+. -.+..+.| +-.||..|+...-
T Consensus 6 ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCC----CeEEecCCCCceehHHHHHHHc
Confidence 455679999998 33567899 8899999987643
No 99
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=67.45 E-value=3.7 Score=25.82 Aligned_cols=46 Identities=22% Similarity=0.449 Sum_probs=29.6
Q ss_pred cccccccCccCCCceEecCCCCcccHHHHHHHHh--cCCCCCCCCCcc
Q 025685 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWAS--YVRNPTCPQCKH 90 (249)
Q Consensus 45 ~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~--~~~~~~CP~CR~ 90 (249)
.|.||...-....-+.--.|...||..|+..-+. ..+...||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4888886511123344467889999999965322 124578999964
No 100
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=66.58 E-value=1.7 Score=31.13 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=34.2
Q ss_pred CCcccccccccCcc--CCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 025685 41 NHGGVCAICLDKTV--LQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92 (249)
Q Consensus 41 ~~~~~C~ICl~~~~--~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~ 92 (249)
.++..|.||...-. ...-+.--.|.-.||..|+..-....+...||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 46688999997610 11223335788899999997533334677899996654
No 101
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.20 E-value=0.82 Score=29.79 Aligned_cols=48 Identities=19% Similarity=0.512 Sum_probs=32.2
Q ss_pred CCCcccccccccCccCCCceEecCCCCcccHHHHHHHHh--cCCCCCCCCCcc
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS--YVRNPTCPQCKH 90 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~--~~~~~~CP~CR~ 90 (249)
..++..|.||... ..-+.--.|...||..|+.+-+. ..+...||.|..
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3466779999976 34444567888999999875332 124567888853
No 102
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=65.07 E-value=2.9 Score=30.08 Aligned_cols=50 Identities=16% Similarity=0.460 Sum_probs=35.0
Q ss_pred CCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHh--cCCCCCCCCCccc
Q 025685 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS--YVRNPTCPQCKHP 91 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~--~~~~~~CP~CR~~ 91 (249)
...+...|.||... .+-+.--.|.-.||..|+.+-+. ..+...||.|...
T Consensus 21 ~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 44567789999976 34444567888999999966433 1346789999753
No 103
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=64.77 E-value=2.4 Score=29.19 Aligned_cols=50 Identities=18% Similarity=0.348 Sum_probs=31.7
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHh-------cCCCCCCCCCccc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS-------YVRNPTCPQCKHP 91 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~-------~~~~~~CP~CR~~ 91 (249)
.+...| ||........-|.--.|...||..|+.--.. ....+.||.|+..
T Consensus 14 ~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 14 PNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 345678 8988742223344457888999999842111 1257899999653
No 104
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=63.93 E-value=13 Score=29.56 Aligned_cols=50 Identities=20% Similarity=0.468 Sum_probs=32.0
Q ss_pred CCCCcccccccccCccCCCceEec--CCCCcccHHHHHHHHhc--------CCCCCCCCCccc
Q 025685 39 FGNHGGVCAICLDKTVLQETALVK--GCEHAYCATCILRWASY--------VRNPTCPQCKHP 91 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~l--~CgH~FC~~CI~~w~~~--------~~~~~CP~CR~~ 91 (249)
.+..+..|.||-+- .+-+.-- .|...||..||..++.. .....|=+|.-.
T Consensus 75 eDG~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 75 DDGYQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp TTSSBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CCCCcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 34456677777765 1222122 58899999999987653 245678888543
No 105
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=63.56 E-value=1.4 Score=29.04 Aligned_cols=47 Identities=19% Similarity=0.497 Sum_probs=31.9
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHh--cCCCCCCCCCcc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS--YVRNPTCPQCKH 90 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~--~~~~~~CP~CR~ 90 (249)
.++..|.||... ..-+.--.|...||..|+.+-+. ..+...||.|..
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 456779999875 34444568888999999875332 124567888844
No 106
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=62.52 E-value=1.6 Score=25.86 Aligned_cols=11 Identities=27% Similarity=0.899 Sum_probs=6.7
Q ss_pred CcccccccccC
Q 025685 42 HGGVCAICLDK 52 (249)
Q Consensus 42 ~~~~C~ICl~~ 52 (249)
+++.||||+..
T Consensus 4 EGFiCP~C~~~ 14 (34)
T 3mjh_B 4 EGFICPQCMKS 14 (34)
T ss_dssp EEEECTTTCCE
T ss_pred cccCCcHHHHH
Confidence 45666666655
No 107
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=62.43 E-value=1.3 Score=29.91 Aligned_cols=47 Identities=23% Similarity=0.500 Sum_probs=32.3
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHh--cCCCCCCCCCcc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS--YVRNPTCPQCKH 90 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~--~~~~~~CP~CR~ 90 (249)
.++..|.||.+. .+-+.--.|...||..|+.+-+. ..+...||.|..
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 466789999875 34444567888999999875322 124567998854
No 108
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=60.89 E-value=1.7 Score=29.65 Aligned_cols=52 Identities=13% Similarity=0.231 Sum_probs=32.3
Q ss_pred CCCCCcccccccccCccCCCceEecCCCCcccHHHHHHHHh-cCCCCCCCCCcc
Q 025685 38 GFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS-YVRNPTCPQCKH 90 (249)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~-~~~~~~CP~CR~ 90 (249)
....+...| ||........-|.--.|...||..|+.--.. ....+.||.|+.
T Consensus 14 ~~~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 14 LYFQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CTTTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 344567778 9988732112333456888999999854221 124578888864
No 109
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=60.62 E-value=15 Score=33.38 Aligned_cols=49 Identities=20% Similarity=0.516 Sum_probs=32.3
Q ss_pred CCCcccccccccCccCCCceEec--CCCCcccHHHHHHHHhc--------CCCCCCCCCccc
Q 025685 40 GNHGGVCAICLDKTVLQETALVK--GCEHAYCATCILRWASY--------VRNPTCPQCKHP 91 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l--~CgH~FC~~CI~~w~~~--------~~~~~CP~CR~~ 91 (249)
+..+..|.||-+- .+-+..- .|...||..||.+++.. .....|=+|.-.
T Consensus 90 DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 90 DGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 4455667777664 2222233 78899999999987742 246789888654
No 110
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=60.07 E-value=4.9 Score=30.60 Aligned_cols=35 Identities=20% Similarity=0.507 Sum_probs=24.4
Q ss_pred CCcccccccccCccCC-CceEecCCCCcccHHHHHH
Q 025685 41 NHGGVCAICLDKTVLQ-ETALVKGCEHAYCATCILR 75 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~-~pv~~l~CgH~FC~~CI~~ 75 (249)
.+...|.+|...|.+. ...--..||+.||..|...
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3456799999986433 2222468999999999643
No 111
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=57.84 E-value=3.1 Score=28.88 Aligned_cols=50 Identities=12% Similarity=0.232 Sum_probs=31.1
Q ss_pred CCcccccccccCccCCCceEec--CCCCcccHHHHHHHHhc-------CCCCCCCCCccc
Q 025685 41 NHGGVCAICLDKTVLQETALVK--GCEHAYCATCILRWASY-------VRNPTCPQCKHP 91 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l--~CgH~FC~~CI~~w~~~-------~~~~~CP~CR~~ 91 (249)
++...| ||........-|.-- .|...||..|+.--... ...+.||.|+..
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 456778 898873222223333 68889999998532111 136789999654
No 112
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=57.45 E-value=7.5 Score=27.14 Aligned_cols=36 Identities=19% Similarity=0.582 Sum_probs=24.9
Q ss_pred CCCcccccccccCccCC-CceEecCCCCcccHHHHHH
Q 025685 40 GNHGGVCAICLDKTVLQ-ETALVKGCEHAYCATCILR 75 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~-~pv~~l~CgH~FC~~CI~~ 75 (249)
+.+...|.+|...|.+. ..---..||..||..|...
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 34556799999986433 1222468999999999643
No 113
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=56.56 E-value=8.4 Score=27.02 Aligned_cols=37 Identities=14% Similarity=0.283 Sum_probs=25.7
Q ss_pred CCCCcccccccccCccCC-CceEecCCCCcccHHHHHH
Q 025685 39 FGNHGGVCAICLDKTVLQ-ETALVKGCEHAYCATCILR 75 (249)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~-~pv~~l~CgH~FC~~CI~~ 75 (249)
.+.+...|.+|...|.+. ..---..||+.||..|...
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 344567899999986433 2222468999999999643
No 114
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=56.50 E-value=1.9 Score=28.80 Aligned_cols=52 Identities=23% Similarity=0.501 Sum_probs=34.0
Q ss_pred CCCcccccccccCccC--CCceEecCCCCcccHHHHHHHHh-----cCCCCCCCCCccc
Q 025685 40 GNHGGVCAICLDKTVL--QETALVKGCEHAYCATCILRWAS-----YVRNPTCPQCKHP 91 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~--~~pv~~l~CgH~FC~~CI~~w~~-----~~~~~~CP~CR~~ 91 (249)
..++..|.||...... ..-+.--.|...||..|+..-+. ..+...||.|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 3466789999975211 23334468888999999875221 2356789988653
No 115
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=56.21 E-value=2.1 Score=34.17 Aligned_cols=50 Identities=20% Similarity=0.431 Sum_probs=32.3
Q ss_pred CCcccccccccCcc-CCCceEecCCCCcccHHHHHHHH---hcCCCCCCCCCccc
Q 025685 41 NHGGVCAICLDKTV-LQETALVKGCEHAYCATCILRWA---SYVRNPTCPQCKHP 91 (249)
Q Consensus 41 ~~~~~C~ICl~~~~-~~~pv~~l~CgH~FC~~CI~~w~---~~~~~~~CP~CR~~ 91 (249)
.+...| ||..... ...-+..-.|...||..|+.--. .......||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 466779 9988631 11234445788899999995311 11357899999764
No 116
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=53.54 E-value=3.7 Score=33.44 Aligned_cols=46 Identities=17% Similarity=0.439 Sum_probs=31.4
Q ss_pred ccccccccCccCCCceEecCCCCcccHHHHHHHHh--cCCCCCCCCCcccC
Q 025685 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWAS--YVRNPTCPQCKHPF 92 (249)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~--~~~~~~CP~CR~~~ 92 (249)
..|.+|... .+-+....|...||..|+.+-+. ..+...||.|+..-
T Consensus 3 ~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 469999876 33333457888999999865332 13567899997653
No 117
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=53.16 E-value=1.7 Score=30.85 Aligned_cols=41 Identities=27% Similarity=0.669 Sum_probs=24.4
Q ss_pred ccccccCccC---CCceEecCCCCcccHHHHHHHHhcCCCCCCC
Q 025685 46 CAICLDKTVL---QETALVKGCEHAYCATCILRWASYVRNPTCP 86 (249)
Q Consensus 46 C~ICl~~~~~---~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP 86 (249)
||-|-..+.. ..++.-..|++.||..|-..|-......+|.
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~ 71 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCE 71 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHH
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChH
Confidence 8877665311 1234344599999999988883322344553
No 118
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=53.03 E-value=7.9 Score=27.60 Aligned_cols=34 Identities=21% Similarity=0.554 Sum_probs=24.1
Q ss_pred CcccccccccCccCC-CceEecCCCCcccHHHHHH
Q 025685 42 HGGVCAICLDKTVLQ-ETALVKGCEHAYCATCILR 75 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~-~pv~~l~CgH~FC~~CI~~ 75 (249)
+...|.+|...|.+. ...--..||+.||..|...
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 446799999886433 2223468999999999654
No 119
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=51.46 E-value=2.4 Score=30.68 Aligned_cols=49 Identities=12% Similarity=0.233 Sum_probs=28.4
Q ss_pred CCCcccccccccCccCCCceEecCCC---CcccHHHHHHHHhcCCCCCCCC-Ccc
Q 025685 40 GNHGGVCAICLDKTVLQETALVKGCE---HAYCATCILRWASYVRNPTCPQ-CKH 90 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l~Cg---H~FC~~CI~~w~~~~~~~~CP~-CR~ 90 (249)
.++...| ||.... ...-|.--.|. ..||..|+.--....+...||. |+.
T Consensus 23 ~~~~~yC-iC~~~~-~g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 23 NQEEVYC-FCRNVS-YGPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp -CCSCCS-TTTCCC-SSSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCCcEE-EeCCCC-CCCEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 3566778 999852 22222223433 5899999862111224678999 853
No 120
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.31 E-value=10 Score=26.47 Aligned_cols=35 Identities=20% Similarity=0.520 Sum_probs=24.0
Q ss_pred CCCcccccccccCccCCC-ceEecCCCCcccHHHHH
Q 025685 40 GNHGGVCAICLDKTVLQE-TALVKGCEHAYCATCIL 74 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~-pv~~l~CgH~FC~~CI~ 74 (249)
+.+...|.+|...|.+.. .---..||..||..|..
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 345567999999864331 12236899999999953
No 121
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=51.15 E-value=1.6 Score=28.80 Aligned_cols=48 Identities=19% Similarity=0.401 Sum_probs=28.0
Q ss_pred CCcccccccccCccCCCceEecC--CC-CcccHHHHHHHHhcCCCCCCCCCcc
Q 025685 41 NHGGVCAICLDKTVLQETALVKG--CE-HAYCATCILRWASYVRNPTCPQCKH 90 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~--Cg-H~FC~~CI~~w~~~~~~~~CP~CR~ 90 (249)
++...| ||.... ...-+.--. |. ..||..|+.--....+...||.|+.
T Consensus 7 ~e~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 456678 998862 122222233 55 5899999972111224678998854
No 122
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=50.07 E-value=8.1 Score=29.81 Aligned_cols=33 Identities=15% Similarity=0.537 Sum_probs=23.8
Q ss_pred CCcccccccccCccCC--CceEecCCCCcccHHHH
Q 025685 41 NHGGVCAICLDKTVLQ--ETALVKGCEHAYCATCI 73 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~--~pv~~l~CgH~FC~~CI 73 (249)
.....|.+|...|.+- .......|.|.+|..|-
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 5678899999996322 23345788888888884
No 123
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=49.92 E-value=9 Score=30.27 Aligned_cols=49 Identities=20% Similarity=0.378 Sum_probs=33.3
Q ss_pred CcccccccccCccCC--CceEecCCCCcccHHHHHHHHhcCCCCCCCCCccc
Q 025685 42 HGGVCAICLDKTVLQ--ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHP 91 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~--~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~ 91 (249)
....|.+|...|.+- .......|.|.+|..|- .|........|-+|...
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 568899999986322 34456799999999995 24333345567777553
No 124
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=49.30 E-value=12 Score=26.60 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=24.2
Q ss_pred CCcccccccccCccCCC-ceEecCCCCcccHHHHHH
Q 025685 41 NHGGVCAICLDKTVLQE-TALVKGCEHAYCATCILR 75 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~-pv~~l~CgH~FC~~CI~~ 75 (249)
.+...|.+|...|.+.. .---..||+.||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 34567999999864332 222468999999999643
No 125
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=48.48 E-value=33 Score=25.09 Aligned_cols=47 Identities=19% Similarity=0.410 Sum_probs=29.5
Q ss_pred CcccccccccCc------cCCCceEecCCCCcccHHHHHH------HHhcCCCCCCCCCc
Q 025685 42 HGGVCAICLDKT------VLQETALVKGCEHAYCATCILR------WASYVRNPTCPQCK 89 (249)
Q Consensus 42 ~~~~C~ICl~~~------~~~~pv~~l~CgH~FC~~CI~~------w~~~~~~~~CP~CR 89 (249)
....|.+|+..- ...+-+.-..|+..||..|+.. .+. .....||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~-~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVK-ALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHH-TSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhh-ccccccccCC
Confidence 346799998751 0112334468999999999942 122 3567788774
No 126
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=48.19 E-value=1.7 Score=28.88 Aligned_cols=35 Identities=17% Similarity=0.601 Sum_probs=21.7
Q ss_pred ccccccccCccCC---CceEecC--CCCcccHHHHHHHHh
Q 025685 44 GVCAICLDKTVLQ---ETALVKG--CEHAYCATCILRWAS 78 (249)
Q Consensus 44 ~~C~ICl~~~~~~---~pv~~l~--CgH~FC~~CI~~w~~ 78 (249)
-.||-|...|... +.+.-.. |++.||..|...|..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 4588888875222 2222223 778888888777765
No 127
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.45 E-value=2 Score=30.98 Aligned_cols=50 Identities=20% Similarity=0.439 Sum_probs=31.1
Q ss_pred CCcccccccccCccCCCceEecCCCCcccHHHHHHHHh--cCCCCCCCCCcc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS--YVRNPTCPQCKH 90 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~--~~~~~~CP~CR~ 90 (249)
.+...|.||...-....-+..-.|...||..|+.+-+. ..+...||.|..
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 45667999998621112333457888999999864222 124567988843
No 128
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=47.20 E-value=13 Score=25.19 Aligned_cols=31 Identities=23% Similarity=0.524 Sum_probs=22.0
Q ss_pred ccccccccCccCC-CceEecCCCCcccHHHHH
Q 025685 44 GVCAICLDKTVLQ-ETALVKGCEHAYCATCIL 74 (249)
Q Consensus 44 ~~C~ICl~~~~~~-~pv~~l~CgH~FC~~CI~ 74 (249)
..|.+|...|.+. ..---..||..||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 4799999986432 222246899999999953
No 129
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=47.10 E-value=2.1 Score=28.63 Aligned_cols=48 Identities=19% Similarity=0.408 Sum_probs=27.9
Q ss_pred CCcccccccccCccCCCceEecC--CC-CcccHHHHHHHHhcCCCCCCCCCcc
Q 025685 41 NHGGVCAICLDKTVLQETALVKG--CE-HAYCATCILRWASYVRNPTCPQCKH 90 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~--Cg-H~FC~~CI~~w~~~~~~~~CP~CR~ 90 (249)
++...| ||.... ...-+.--. |. ..||..|+.--....+...||.|+.
T Consensus 9 ~e~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 455677 998862 122221223 44 7899999963222234678998864
No 130
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=46.59 E-value=34 Score=18.93 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhh
Q 025685 222 EAADKAAASKHQQHLARLGRNLEAR 246 (249)
Q Consensus 222 ~~~~~~~~~k~~~~~~~~~~~~~~~ 246 (249)
+|.+|+-|+- +-.|+.|.++||+-
T Consensus 4 ealekkcaal-esklqalekkleal 27 (31)
T 3ljm_A 4 EALEKKCAAL-ESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3445554443 44577788888863
No 131
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=45.88 E-value=4.7 Score=30.06 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=27.4
Q ss_pred ccccccccCcc-------CCCceEecCCCCcccHHHHHHHH-----hcCCCCCCCCC
Q 025685 44 GVCAICLDKTV-------LQETALVKGCEHAYCATCILRWA-----SYVRNPTCPQC 88 (249)
Q Consensus 44 ~~C~ICl~~~~-------~~~pv~~l~CgH~FC~~CI~~w~-----~~~~~~~CP~C 88 (249)
..|.||+..-. ..+-+.-..|+..||..|+.... .......||.|
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C 58 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC 58 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc
Confidence 35899987520 01224446889999999986421 11245667766
No 132
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=45.76 E-value=11 Score=28.65 Aligned_cols=49 Identities=16% Similarity=0.403 Sum_probs=28.4
Q ss_pred CCCcccccccccCccCC-CceEecCCCCcccHHHHHHHHhcCCCCCCCCCcc
Q 025685 40 GNHGGVCAICLDKTVLQ-ETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~-~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~ 90 (249)
+.....|.+|...|.+. ..--...||..||..|...... ....|-.|-.
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~--~vRVC~~C~~ 65 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN--GPRLCLLCQR 65 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC------CCEEHHHHH
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC--CceECHHHHH
Confidence 44556799999985432 1222468999999999655443 3456766643
No 133
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=45.55 E-value=9.8 Score=31.44 Aligned_cols=33 Identities=21% Similarity=0.655 Sum_probs=23.3
Q ss_pred CcccccccccCccCC-CceEecCCCCcccHHHHH
Q 025685 42 HGGVCAICLDKTVLQ-ETALVKGCEHAYCATCIL 74 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~-~pv~~l~CgH~FC~~CI~ 74 (249)
+...|.+|...|.+. ...-...||+.||..|..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 457899999886432 222246899999999954
No 134
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=44.99 E-value=2.2 Score=28.18 Aligned_cols=47 Identities=17% Similarity=0.364 Sum_probs=27.1
Q ss_pred CCcccccccccCccCCCc-eEecC--CC-CcccHHHHHHHHhcCCCCCCCCCcc
Q 025685 41 NHGGVCAICLDKTVLQET-ALVKG--CE-HAYCATCILRWASYVRNPTCPQCKH 90 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~p-v~~l~--Cg-H~FC~~CI~~w~~~~~~~~CP~CR~ 90 (249)
++...| ||... .... +.--. |. ..||..|+.--....+...||.|..
T Consensus 8 ~e~~~C-~C~~~--~~g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQV--SYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEE--CCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCc--CCCCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 455667 89886 3222 21223 44 5799999972111235678998854
No 135
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=43.63 E-value=19 Score=26.52 Aligned_cols=46 Identities=15% Similarity=0.357 Sum_probs=33.8
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
+-+.|..|...| ........=|..||..|....+ ...|+.|..+|.
T Consensus 29 ~CF~C~~C~~~L--~~~~f~~~~g~~yC~~cy~~~~----~~~C~~C~~~I~ 74 (126)
T 2xqn_T 29 KHFCCFDCDSIL--AGEIYVMVNDKPVCKPCYVKNH----AVVCQGCHNAID 74 (126)
T ss_dssp GGSBCTTTCCBC--TTSEEEEETTEEEEHHHHHHHS----CCBCTTTCSBCC
T ss_pred CCCCcCCCCCCC--CcCEEEeECCEEechHHhCcCc----CccCcccCCcCC
Confidence 568899999884 4333345668889999986644 356999999886
No 136
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=43.20 E-value=2.1 Score=30.03 Aligned_cols=35 Identities=23% Similarity=0.623 Sum_probs=22.6
Q ss_pred cccccc--cccCccCC---CceEec-----CCCCcccHHHHHHHH
Q 025685 43 GGVCAI--CLDKTVLQ---ETALVK-----GCEHAYCATCILRWA 77 (249)
Q Consensus 43 ~~~C~I--Cl~~~~~~---~pv~~l-----~CgH~FC~~CI~~w~ 77 (249)
..-||- |...+... ..+.-. .|++.||..|...|-
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYH 69 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcccc
Confidence 556876 77664221 233333 699999999987664
No 137
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=41.63 E-value=13 Score=31.04 Aligned_cols=34 Identities=15% Similarity=0.484 Sum_probs=23.8
Q ss_pred CcccccccccCccCC-CceEecCCCCcccHHHHHH
Q 025685 42 HGGVCAICLDKTVLQ-ETALVKGCEHAYCATCILR 75 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~-~pv~~l~CgH~FC~~CI~~ 75 (249)
+...|.+|...|.+. ...-...||+.||..|-..
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 456899999886433 2222468999999999643
No 138
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=40.95 E-value=5.7 Score=35.89 Aligned_cols=50 Identities=18% Similarity=0.324 Sum_probs=0.0
Q ss_pred CCcccccccccCccCC-CceEecCCCCcccHHHHHHHHhc-----CCCCCCCCCcc
Q 025685 41 NHGGVCAICLDKTVLQ-ETALVKGCEHAYCATCILRWASY-----VRNPTCPQCKH 90 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~-~pv~~l~CgH~FC~~CI~~w~~~-----~~~~~CP~CR~ 90 (249)
.+...|.+|...|.+. ...-...||+.||..|....... .....|-.|-.
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~ 428 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFG 428 (434)
T ss_dssp --------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHH
Confidence 3456799999885322 11224689999999998664421 12345666643
No 139
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=40.48 E-value=3.6 Score=29.31 Aligned_cols=50 Identities=20% Similarity=0.416 Sum_probs=32.1
Q ss_pred cccccccccCccC-CCc-eEecCCCCcccHHHHHHHHh------cCCCCCCCCCcccC
Q 025685 43 GGVCAICLDKTVL-QET-ALVKGCEHAYCATCILRWAS------YVRNPTCPQCKHPF 92 (249)
Q Consensus 43 ~~~C~ICl~~~~~-~~p-v~~l~CgH~FC~~CI~~w~~------~~~~~~CP~CR~~~ 92 (249)
...|.||...-.. .+. ++--.|...||..|+..-+. ..+...||.|....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 4679999976111 122 33357889999999876332 23567899996543
No 140
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=39.57 E-value=11 Score=27.61 Aligned_cols=12 Identities=25% Similarity=1.210 Sum_probs=11.0
Q ss_pred cccHHHHHHHHh
Q 025685 67 AYCATCILRWAS 78 (249)
Q Consensus 67 ~FC~~CI~~w~~ 78 (249)
.||..|+..|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999987
No 141
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=39.15 E-value=11 Score=27.60 Aligned_cols=13 Identities=23% Similarity=0.989 Sum_probs=11.3
Q ss_pred cccHHHHHHHHhc
Q 025685 67 AYCATCILRWASY 79 (249)
Q Consensus 67 ~FC~~CI~~w~~~ 79 (249)
.||..|+..|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999873
No 142
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=38.15 E-value=9.5 Score=24.16 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=26.0
Q ss_pred ccccccCccCCC-ceEec-CCCCcccHHHHHHHHh--cCCCCCCCCCc
Q 025685 46 CAICLDKTVLQE-TALVK-GCEHAYCATCILRWAS--YVRNPTCPQCK 89 (249)
Q Consensus 46 C~ICl~~~~~~~-pv~~l-~CgH~FC~~CI~~w~~--~~~~~~CP~CR 89 (249)
|.||...+.... -+.-- .|...||..|+.--.. ......||.|+
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 678887742122 23333 5777999999853111 02578899985
No 143
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.04 E-value=8.5 Score=26.18 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=27.2
Q ss_pred CCcccccccccCccCCCceEecCC---CCcccHHHHHHHHhcCCCCCCCCCccc
Q 025685 41 NHGGVCAICLDKTVLQETALVKGC---EHAYCATCILRWASYVRNPTCPQCKHP 91 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l~C---gH~FC~~CI~~w~~~~~~~~CP~CR~~ 91 (249)
++...| ||.... ...-|.--.| ...||..|+.--........||.|...
T Consensus 4 ~~~~yC-~C~~~~-~g~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 4 GSSGYC-ICNQVS-YGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAA 55 (70)
T ss_dssp SCCCCS-TTSCCC-CSSEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCeEE-EcCCCC-CCCEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCcc
Confidence 455667 588761 2222222233 268999999632222346789988543
No 144
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=36.72 E-value=4.7 Score=27.41 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=31.4
Q ss_pred CCCcccccccccCccCC-CceEecCCCCcccHHHHHHHHh--cCCCCCCCCCccc
Q 025685 40 GNHGGVCAICLDKTVLQ-ETALVKGCEHAYCATCILRWAS--YVRNPTCPQCKHP 91 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~-~pv~~l~CgH~FC~~CI~~w~~--~~~~~~CP~CR~~ 91 (249)
..+...| ||....... .-+.--.|...||..|+.--.. ....+.||.|+..
T Consensus 13 ~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 13 DNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp CSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 4456778 798763222 2344457888899999853211 1245789988653
No 145
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=34.87 E-value=34 Score=22.75 Aligned_cols=34 Identities=18% Similarity=0.414 Sum_probs=22.0
Q ss_pred CCcccccccccCccCCCc-eEec-CCCCcccHHHHH
Q 025685 41 NHGGVCAICLDKTVLQET-ALVK-GCEHAYCATCIL 74 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~p-v~~l-~CgH~FC~~CI~ 74 (249)
.....|++|...+..... +.-- .|.-.||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 455679999998533322 3334 788899999984
No 146
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=34.54 E-value=10 Score=32.02 Aligned_cols=46 Identities=20% Similarity=0.517 Sum_probs=26.4
Q ss_pred cccccccCccCCCceEecCCCCcccHHHHHHHHhc--CC-CCCCCCCcc
Q 025685 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASY--VR-NPTCPQCKH 90 (249)
Q Consensus 45 ~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~--~~-~~~CP~CR~ 90 (249)
.|.+|...-....-+..-.|...||..|+.+-+.. .+ ...||.|..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 57888763111233344578899999999753331 23 568999965
No 147
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=34.54 E-value=2.7 Score=30.82 Aligned_cols=43 Identities=23% Similarity=0.493 Sum_probs=27.8
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
....||+|...+... =++.+|..|-..+. ....||.|..++..
T Consensus 31 M~~~CP~Cq~eL~~~-------g~~~hC~~C~~~f~---~~a~CPdC~q~Lev 73 (101)
T 2jne_A 31 MELHCPQCQHVLDQD-------NGHARCRSCGEFIE---MKALCPDCHQPLQV 73 (101)
T ss_dssp CCCBCSSSCSBEEEE-------TTEEEETTTCCEEE---EEEECTTTCSBCEE
T ss_pred ccccCccCCCcceec-------CCEEECccccchhh---ccccCcchhhHHHH
Confidence 458999999883211 13445887854322 24579999998765
No 148
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.78 E-value=12 Score=26.02 Aligned_cols=46 Identities=26% Similarity=0.459 Sum_probs=29.0
Q ss_pred cccccccCccCCCceEecCCCCcccHHHHHHHHhc--CC-CCCCCCCcc
Q 025685 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASY--VR-NPTCPQCKH 90 (249)
Q Consensus 45 ~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~--~~-~~~CP~CR~ 90 (249)
.|.||...-....-+.--.|...||..|+.+-+.. .+ ...||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 67888864112233334578899999999753321 23 568999964
No 149
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=32.71 E-value=17 Score=26.92 Aligned_cols=49 Identities=22% Similarity=0.352 Sum_probs=30.5
Q ss_pred CCCcccccccccCccCCCceEec--CCCCcccHHHHHHHHh--cCCCCCCCCCcccCc
Q 025685 40 GNHGGVCAICLDKTVLQETALVK--GCEHAYCATCILRWAS--YVRNPTCPQCKHPFE 93 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~l--~CgH~FC~~CI~~w~~--~~~~~~CP~CR~~~~ 93 (249)
..++..|.+|.+. .+-+.-- .|-..||..|+. +. ..+...||.|...+.
T Consensus 12 ~~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 12 QMHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp CSSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 3466779999864 3322222 477899999986 32 124567887765443
No 150
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=32.70 E-value=13 Score=25.14 Aligned_cols=45 Identities=20% Similarity=0.527 Sum_probs=26.7
Q ss_pred ccccccCccCCCceEecCCCCcccHHHHHHHHhc--CC-CCCCCCCcc
Q 025685 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASY--VR-NPTCPQCKH 90 (249)
Q Consensus 46 C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~--~~-~~~CP~CR~ 90 (249)
|.||...-....-+.--.|...||..|+.+-+.. .+ ...||.|..
T Consensus 21 C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 21 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp BTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 4566643101222333568899999999753321 24 678999965
No 151
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=32.56 E-value=9.4 Score=26.54 Aligned_cols=45 Identities=20% Similarity=0.537 Sum_probs=25.6
Q ss_pred ccccccCccCCCceEecCCCCcccHHHHHHHHhc--CCC-CCCCCCcc
Q 025685 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASY--VRN-PTCPQCKH 90 (249)
Q Consensus 46 C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~--~~~-~~CP~CR~ 90 (249)
|.||...-....-+.--.|...||..|+.+-+.. .+. ..||.|+.
T Consensus 29 C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 29 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp BTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 5555554111112223578889999999764332 233 78999964
No 152
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=32.15 E-value=9.7 Score=26.04 Aligned_cols=50 Identities=14% Similarity=0.333 Sum_probs=30.1
Q ss_pred CCcccccccccCccC-CCceEecCCCCcccHHHHHHHHhc---CCCCCCCCCccc
Q 025685 41 NHGGVCAICLDKTVL-QETALVKGCEHAYCATCILRWASY---VRNPTCPQCKHP 91 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~-~~pv~~l~CgH~FC~~CI~~w~~~---~~~~~CP~CR~~ 91 (249)
+....| ||...+.. ..-|.--.|.-.||..|+.--... ...+.||.|+..
T Consensus 8 ~~~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 8 TVPVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CCeeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 344555 88876311 123344568889999999532211 145789999654
No 153
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.91 E-value=38 Score=24.86 Aligned_cols=51 Identities=12% Similarity=-0.003 Sum_probs=34.2
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
+-+.|..|...|..........=|..||..|....+. ....|..|..+|..
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~--~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG--NSGAGGSGGHMGSG 81 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC--CCCSSSCSSCCSCC
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcC--CCCccccCCCCcCc
Confidence 3477999988842111222446678899999987664 22369999988864
No 154
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=31.35 E-value=7.1 Score=34.44 Aligned_cols=47 Identities=15% Similarity=0.448 Sum_probs=32.3
Q ss_pred CCcccccccccCccCCCceEec---CCC--CcccHHHHHHHHhcCCCCCCCCCccc
Q 025685 41 NHGGVCAICLDKTVLQETALVK---GCE--HAYCATCILRWASYVRNPTCPQCKHP 91 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~l---~Cg--H~FC~~CI~~w~~~~~~~~CP~CR~~ 91 (249)
.....||+|-.. ..-.+... .=| +.+|..|-..|-. ....||.|...
T Consensus 180 ~~~~~CPvCGs~--P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~--~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSP--PMAGMIRQGGKETGLRYLSCSLCACEWHY--VRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCC--EEEEEEEC----CCEEEEEETTTCCEEEC--CTTSCSSSCCC
T ss_pred ccCCCCCCCCCc--CceeEEeecCCCCCcEEEEeCCCCCEEee--cCcCCcCCCCC
Confidence 567899999987 33222111 123 5679999888876 57789999775
No 155
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=31.21 E-value=20 Score=23.22 Aligned_cols=13 Identities=15% Similarity=0.181 Sum_probs=10.2
Q ss_pred CCcccccccccCc
Q 025685 41 NHGGVCAICLDKT 53 (249)
Q Consensus 41 ~~~~~C~ICl~~~ 53 (249)
-+-+.||+|...+
T Consensus 8 L~iL~CP~c~~~L 20 (56)
T 2kpi_A 8 LEILACPACHAPL 20 (56)
T ss_dssp TTSCCCSSSCSCE
T ss_pred HhheeCCCCCCcc
Confidence 4567899999874
No 156
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=30.81 E-value=4.6 Score=27.19 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=25.9
Q ss_pred CcccccccccCccCCCceEec--CCCCcccHHHHHHHHhc------CCCCCCCCCcc
Q 025685 42 HGGVCAICLDKTVLQETALVK--GCEHAYCATCILRWASY------VRNPTCPQCKH 90 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l--~CgH~FC~~CI~~w~~~------~~~~~CP~CR~ 90 (249)
+...| ||........-|.-- .|...||..|+.--... ...+.||.||.
T Consensus 9 ~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 44667 796652122222221 37778999997421110 12478999964
No 157
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=30.78 E-value=31 Score=25.40 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=33.9
Q ss_pred CcccccccccCccCC-CceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 42 HGGVCAICLDKTVLQ-ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~-~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
+-+.|..|...|... .+. ...=|..||..|....+. ....|..|..+|.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~-~~~~g~~yC~~~y~~~~~--~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRL-YYKLGRKLCRRDYLRLFG--QDGLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCE-EEETTEEECHHHHHHHHC--CCEECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeE-EEECCEEeecCchhhhCC--CccChhhcCCccC
Confidence 568899998884211 233 445678899999887654 2226999988875
No 158
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=30.33 E-value=32 Score=25.09 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=32.2
Q ss_pred cccccccccCccCC-CceEec-CCCCcccHHHHHHHH--------hcCCCCCCCCCcccCc
Q 025685 43 GGVCAICLDKTVLQ-ETALVK-GCEHAYCATCILRWA--------SYVRNPTCPQCKHPFE 93 (249)
Q Consensus 43 ~~~C~ICl~~~~~~-~pv~~l-~CgH~FC~~CI~~w~--------~~~~~~~CP~CR~~~~ 93 (249)
...|+||...+... .-+.-- .|...||..|+.--. .......||.|+....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 35799999985332 223233 678899999984211 1114578999976543
No 159
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=29.44 E-value=13 Score=20.77 Aligned_cols=13 Identities=23% Similarity=0.559 Sum_probs=9.8
Q ss_pred CCCCCCCcccCcc
Q 025685 82 NPTCPQCKHPFEF 94 (249)
Q Consensus 82 ~~~CP~CR~~~~~ 94 (249)
...||+|+.....
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 4679999887653
No 160
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=29.17 E-value=18 Score=25.40 Aligned_cols=46 Identities=24% Similarity=0.483 Sum_probs=31.7
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
+-+.|..|...| ........=|..||..|.... -...|..|..+|.
T Consensus 32 ~CF~C~~C~~~L--~~~~~~~~~g~~yC~~cy~~~----~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPL--ANETFVAKDNKILCNKCTTRE----DSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCT--TSSCCEEETTEEECHHHHTTC----CCCBCSSSCCBCC
T ss_pred cCCcccccCCCC--CcCeeECcCCEEEChhHhhhh----cCCccccCCCccc
Confidence 557899998884 333224456788999987432 2457999988876
No 161
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=28.72 E-value=23 Score=35.06 Aligned_cols=52 Identities=17% Similarity=0.554 Sum_probs=35.4
Q ss_pred CCCcccccccccCccCCCc---------eEecCCCCcc--------------------cHHHHHHHHhc------CCCCC
Q 025685 40 GNHGGVCAICLDKTVLQET---------ALVKGCEHAY--------------------CATCILRWASY------VRNPT 84 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~p---------v~~l~CgH~F--------------------C~~CI~~w~~~------~~~~~ 84 (249)
..+--+|+-|+..+ .+| +....||..| |..|-..+... .+...
T Consensus 103 ~pD~a~C~~Cl~e~--~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~a 180 (772)
T 4g9i_A 103 PPDIAICDDCLREL--FDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTA 180 (772)
T ss_dssp CCCCCCCHHHHHHH--SSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCC
T ss_pred CCchhhhHHHHHHh--cCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCC
Confidence 45677899999873 333 1124677555 99999988763 24568
Q ss_pred CCCCcccCc
Q 025685 85 CPQCKHPFE 93 (249)
Q Consensus 85 CP~CR~~~~ 93 (249)
||.|.=.+.
T Consensus 181 C~~CGP~l~ 189 (772)
T 4g9i_A 181 CPVCGPSYR 189 (772)
T ss_dssp CTTTSCCEE
T ss_pred CccCCceEE
Confidence 999965543
No 162
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=28.04 E-value=23 Score=26.25 Aligned_cols=29 Identities=24% Similarity=0.592 Sum_probs=18.8
Q ss_pred CceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 025685 57 ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92 (249)
Q Consensus 57 ~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~ 92 (249)
.|.....||+.|+. .......||.|+...
T Consensus 66 ~p~~C~~CG~~F~~-------~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 66 KPAQCRKCGFVFKA-------EINIPSRCPKCKSEW 94 (105)
T ss_dssp CCCBBTTTCCBCCC-------CSSCCSSCSSSCCCC
T ss_pred ECcChhhCcCeecc-------cCCCCCCCcCCCCCc
Confidence 44457799999921 112346799998754
No 163
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=26.95 E-value=25 Score=34.18 Aligned_cols=50 Identities=18% Similarity=0.566 Sum_probs=33.1
Q ss_pred CCcccccccccCccCCCc---------eEecCCCCcc--------------------cHHHHHHHHhc------CCCCCC
Q 025685 41 NHGGVCAICLDKTVLQET---------ALVKGCEHAY--------------------CATCILRWASY------VRNPTC 85 (249)
Q Consensus 41 ~~~~~C~ICl~~~~~~~p---------v~~l~CgH~F--------------------C~~CI~~w~~~------~~~~~C 85 (249)
.+--+|+-|+..+ .+| +....||..| |..|-..+-.. .+...|
T Consensus 15 pD~a~C~~Cl~e~--~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aC 92 (657)
T 3ttc_A 15 PDAATCPACLAEM--NTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVAC 92 (657)
T ss_dssp CCBCCCHHHHHHH--TSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCC
T ss_pred CchhhhHHHHHHh--cCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcC
Confidence 4667788888763 222 1124566555 99999998773 245789
Q ss_pred CCCcccC
Q 025685 86 PQCKHPF 92 (249)
Q Consensus 86 P~CR~~~ 92 (249)
|.|.=.+
T Consensus 93 p~CGP~l 99 (657)
T 3ttc_A 93 PECGPYL 99 (657)
T ss_dssp TTTSCCE
T ss_pred cccCccc
Confidence 9996655
No 164
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.57 E-value=55 Score=21.47 Aligned_cols=42 Identities=24% Similarity=0.458 Sum_probs=25.8
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
....|+-|...|.....+ +..-+..||..| +.|-.|..++..
T Consensus 10 ~~~~C~~C~~~I~~~~~~-~~a~~~~~H~~C----------F~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKI-VNSNGELYHEQC----------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTC-EEETTEEECTTT----------CCCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceE-EEeCccEecccc----------CeECCCCCCCCC
Confidence 456788888885323343 334566677665 347778777653
No 165
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.33 E-value=93 Score=20.01 Aligned_cols=33 Identities=21% Similarity=0.409 Sum_probs=15.5
Q ss_pred cccccccccCccCCCceEecCCCCcccHHHHHHHH
Q 025685 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWA 77 (249)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~ 77 (249)
-+.|..|...| ........=+..||..|....+
T Consensus 33 CF~C~~C~~~L--~~~~~~~~~~~~yC~~cy~~~~ 65 (72)
T 1x61_A 33 CFVCSTCRAQL--RGQHFYAVERRAYCEGCYVATL 65 (72)
T ss_dssp TCBCSSSCCBC--TTSCEEESSSCEEEHHHHHHHH
T ss_pred CCcccccCCcC--CcCcCEeeCCeEECHHHHHHHH
Confidence 35555555553 2221233345556666655544
No 166
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=23.54 E-value=28 Score=34.42 Aligned_cols=51 Identities=20% Similarity=0.552 Sum_probs=33.7
Q ss_pred CCCcccccccccCccCCCc---------eEecCCCCcc--------------------cHHHHHHHHhc------CCCCC
Q 025685 40 GNHGGVCAICLDKTVLQET---------ALVKGCEHAY--------------------CATCILRWASY------VRNPT 84 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~p---------v~~l~CgH~F--------------------C~~CI~~w~~~------~~~~~ 84 (249)
..+--+|+-|+..+ .+| +....||..| |..|-..+-.. .+...
T Consensus 108 ~pD~a~C~~Cl~e~--~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~a 185 (761)
T 3vth_A 108 SPDMGVCEDCLREL--KDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVA 185 (761)
T ss_dssp CCCBCCCHHHHHHH--TCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCC
T ss_pred CCCccccHHHHHHh--cCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCc
Confidence 35667899999873 332 1124666444 99999988763 24568
Q ss_pred CCCCcccC
Q 025685 85 CPQCKHPF 92 (249)
Q Consensus 85 CP~CR~~~ 92 (249)
||.|.=.+
T Consensus 186 C~~CGP~l 193 (761)
T 3vth_A 186 CFDCGPSL 193 (761)
T ss_dssp CTTTSCCE
T ss_pred CCccCCee
Confidence 99995544
No 167
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=23.46 E-value=5.7 Score=28.11 Aligned_cols=41 Identities=24% Similarity=0.720 Sum_probs=21.9
Q ss_pred ccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCcc
Q 025685 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (249)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~~ 94 (249)
..||.|...+.... ++.+|..|-..+.. ...||.|..++..
T Consensus 3 ~~CP~C~~~l~~~~-------~~~~C~~C~~~~~~---~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERNG-------DTAHCETCAKDFSL---QALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEECS-------SEEECTTTCCEEEE---EEECSSSCSCCCE
T ss_pred CCCCCCCCccccCC-------CceECccccccCCC---cccCcchhhHHHH
Confidence 57888888742211 13345556332222 2367777777643
No 168
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=22.93 E-value=13 Score=34.72 Aligned_cols=51 Identities=14% Similarity=0.237 Sum_probs=31.5
Q ss_pred CCCcccccccccCcc-CCCceEecCCCCcccHHHHHHHHhc---CCCCCCCCCccc
Q 025685 40 GNHGGVCAICLDKTV-LQETALVKGCEHAYCATCILRWASY---VRNPTCPQCKHP 91 (249)
Q Consensus 40 ~~~~~~C~ICl~~~~-~~~pv~~l~CgH~FC~~CI~~w~~~---~~~~~CP~CR~~ 91 (249)
..+...| ||...+. ...-+..-.|...||..|+.--... .....||.|+..
T Consensus 34 ~~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 34 PPPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCCCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3445566 9987631 1233445678889999999532221 135789999753
No 169
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.34 E-value=81 Score=20.17 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=20.7
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHh
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS 78 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~ 78 (249)
+-+.|..|...| ........=+..||..|....+.
T Consensus 30 ~CF~C~~C~~~L--~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 30 DCFVCVTCSKKL--AGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTTBCTTTCCBC--TTSCEEECSSCEEEHHHHHHHHT
T ss_pred CcCEECCCCCCC--CCCccEeECCEEECHHHhHHHhc
Confidence 456777777773 22222344567778777766553
No 170
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.93 E-value=53 Score=21.19 Aligned_cols=35 Identities=20% Similarity=0.421 Sum_probs=17.8
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHh
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS 78 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~ 78 (249)
+-+.|..|...| ........-+..||..|..+.+.
T Consensus 30 ~CF~C~~C~~~L--~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 30 ECFRCDLCQEVL--ADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp TTSBCSSSCCBC--SSSCCEEETTEEECHHHHHHHHC
T ss_pred cCCEeCCCCCcC--CCCccEeECCeEECHHHhhhhcC
Confidence 345666666653 22122334455666666655443
No 171
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.88 E-value=71 Score=21.84 Aligned_cols=28 Identities=11% Similarity=0.207 Sum_probs=14.9
Q ss_pred cccccccccCccCCCceEecCCCCcccHHHH
Q 025685 43 GGVCAICLDKTVLQETALVKGCEHAYCATCI 73 (249)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI 73 (249)
...|+.|...| ...+ +..-+..||..|+
T Consensus 25 ~~~C~~C~~~I--~~~~-v~a~~~~~H~~CF 52 (90)
T 2dar_A 25 TPMCAHCNQVI--RGPF-LVALGKSWHPEEF 52 (90)
T ss_dssp CCBBSSSCCBC--CSCE-EEETTEEECTTTC
T ss_pred CCCCccCCCEe--cceE-EEECCccccccCC
Confidence 34577777664 2222 2344566666665
No 172
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=20.64 E-value=43 Score=18.62 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=16.3
Q ss_pred ccccccccCccCCCceEecCCCCcccHHH
Q 025685 44 GVCAICLDKTVLQETALVKGCEHAYCATC 72 (249)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~l~CgH~FC~~C 72 (249)
..|+.|...+-..+. +..-|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek--~~~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEK--VNCLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGC--CCSSSSCCCGGG
T ss_pred CcCCccCCEEeccee--EEECCeEecccC
Confidence 468888887322222 334567777777
No 173
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=20.57 E-value=1.1e+02 Score=23.63 Aligned_cols=45 Identities=18% Similarity=0.387 Sum_probs=32.5
Q ss_pred CcccccccccCccCCCceEecCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 025685 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (249)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~l~CgH~FC~~CI~~w~~~~~~~~CP~CR~~~~ 93 (249)
+-+.|..|...| ....+ ..=|..||..|....+. ..|..|...|.
T Consensus 32 ~CF~C~~C~~~L--~~~~f-~~~g~~yC~~~y~~~f~----~~C~~C~~~I~ 76 (169)
T 2rgt_A 32 KCLKCSDCHVPL--AERCF-SRGESVYCKDDFFKRFG----TKCAACQLGIP 76 (169)
T ss_dssp TTSBCTTTCCBC--CSCCE-ESSSCEECHHHHHHHHS----CBCTTTCCBCC
T ss_pred ccCccCCCCCcC--CCCCc-ccCCeeeeccccccccc----ccccccccccC
Confidence 568899999884 33223 35678899999877553 45999988775
No 174
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=20.21 E-value=65 Score=23.05 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=18.8
Q ss_pred ccccccccCccCCCceEecC--CCCcccHH
Q 025685 44 GVCAICLDKTVLQETALVKG--CEHAYCAT 71 (249)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~l~--CgH~FC~~ 71 (249)
..|..|... ..+-..-+. |||.+|..
T Consensus 26 ~~C~~C~~~--~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 26 GTCQDCKVQ--GPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TCCSSSCCC--CSSCEEECCTTCCCEECCT
T ss_pred CcCcCcCCC--CCCceeeecccCCCcccCC
Confidence 569999955 344345778 99999954
Done!