Query 025686
Match_columns 249
No_of_seqs 153 out of 1562
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 08:26:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 7.9E-45 1.7E-49 315.9 16.5 208 2-213 3-211 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.9 1.3E-21 2.7E-26 146.3 7.5 86 129-214 2-87 (87)
3 PF03083 MtN3_slv: Sugar efflu 99.8 7.2E-21 1.6E-25 142.2 5.7 86 7-95 2-87 (87)
4 KOG1623 Multitransmembrane pro 99.5 4.1E-14 8.9E-19 123.7 6.4 90 125-214 4-94 (243)
5 COG4095 Uncharacterized conser 99.3 3.4E-12 7.3E-17 94.2 5.5 81 127-210 5-85 (89)
6 COG4095 Uncharacterized conser 99.3 2.3E-11 4.9E-16 89.8 7.9 86 1-92 1-86 (89)
7 TIGR00951 2A43 Lysosomal Cysti 98.8 1.6E-07 3.5E-12 81.8 15.1 188 9-203 5-213 (220)
8 PF04193 PQ-loop: PQ loop repe 98.1 6.2E-06 1.4E-10 57.1 5.8 54 10-65 4-57 (61)
9 PF04193 PQ-loop: PQ loop repe 98.0 1.7E-05 3.8E-10 54.8 5.1 56 128-186 3-58 (61)
10 KOG3211 Predicted endoplasmic 97.7 0.00043 9.3E-09 59.3 11.0 191 10-213 33-226 (230)
11 KOG2913 Predicted membrane pro 97.1 0.0094 2E-07 53.3 11.6 171 6-182 7-215 (260)
12 PHA02246 hypothetical protein 96.3 0.2 4.4E-06 41.3 13.4 178 1-202 1-185 (192)
13 PRK01021 lpxB lipid-A-disaccha 95.4 0.48 1E-05 47.2 14.2 188 6-208 11-217 (608)
14 TIGR00951 2A43 Lysosomal Cysti 95.4 0.023 4.9E-07 49.6 4.5 50 127-179 4-53 (220)
15 smart00679 CTNS Repeated motif 94.9 0.024 5.1E-07 33.8 2.4 27 22-48 2-28 (32)
16 smart00679 CTNS Repeated motif 92.8 0.097 2.1E-06 31.1 2.2 28 144-171 2-29 (32)
17 KOG1589 Uncharacterized conser 90.3 0.22 4.8E-06 38.5 2.3 58 33-91 43-100 (118)
18 PF03650 MPC: Uncharacterised 89.7 0.21 4.4E-06 39.5 1.8 60 33-93 39-98 (119)
19 PF03650 MPC: Uncharacterised 87.9 0.16 3.6E-06 40.0 0.1 76 130-210 19-96 (119)
20 PHA02246 hypothetical protein 84.4 9 0.00019 31.8 8.5 36 15-50 116-151 (192)
21 KOG1589 Uncharacterized conser 83.1 0.28 6E-06 38.0 -0.7 56 155-210 43-100 (118)
22 PF10688 Imp-YgjV: Bacterial i 83.0 9.9 0.00021 31.5 8.5 125 45-203 30-154 (163)
23 KOG3211 Predicted endoplasmic 81.2 3.1 6.7E-05 36.1 4.9 72 20-93 154-225 (230)
24 PF07578 LAB_N: Lipid A Biosyn 77.6 4.6 0.0001 29.1 4.1 65 131-199 2-66 (72)
25 KOG2913 Predicted membrane pro 73.3 7.1 0.00015 35.0 5.2 58 125-185 7-64 (260)
26 KOG3145 Cystine transporter Cy 60.8 1.3E+02 0.0029 27.8 10.6 134 21-164 137-298 (372)
27 KOG2489 Transmembrane protein 59.9 1.8E+02 0.004 28.7 12.1 167 13-183 326-522 (592)
28 COG3952 Predicted membrane pro 56.4 8.2 0.00018 29.9 1.9 57 152-208 47-103 (113)
29 PF07578 LAB_N: Lipid A Biosyn 55.3 27 0.00059 25.1 4.3 54 22-79 12-65 (72)
30 PF07857 DUF1632: CEO family ( 49.9 42 0.00092 29.9 5.7 43 170-212 93-138 (254)
31 PF15102 TMEM154: TMEM154 prot 49.7 28 0.00061 28.5 4.1 30 187-216 60-89 (146)
32 PF10688 Imp-YgjV: Bacterial i 47.7 15 0.00033 30.4 2.4 37 45-84 118-154 (163)
33 TIGR00341 conserved hypothetic 40.1 44 0.00095 31.0 4.3 52 40-94 242-293 (325)
34 PF05602 CLPTM1: Cleft lip and 39.8 61 0.0013 31.1 5.5 70 11-83 305-375 (438)
35 KOG4314 Predicted carbohydrate 39.3 51 0.0011 28.8 4.3 54 121-174 126-179 (290)
36 PF01372 Melittin: Melittin; 36.3 67 0.0014 18.3 3.0 16 20-35 9-24 (26)
37 TIGR00341 conserved hypothetic 36.0 1.3E+02 0.0028 27.9 6.7 43 170-212 250-292 (325)
38 PF09586 YfhO: Bacterial membr 35.4 5.1E+02 0.011 26.6 14.6 17 23-39 231-247 (843)
39 TIGR02003 PTS-II-BC-unk1 PTS s 35.2 2E+02 0.0044 28.6 8.4 34 184-219 411-447 (548)
40 PHA03049 IMV membrane protein; 30.6 34 0.00073 24.2 1.5 45 194-248 8-52 (68)
41 PF06800 Sugar_transport: Suga 27.5 4.6E+02 0.01 23.6 8.8 96 43-141 139-238 (269)
42 KOG3106 ER lumen protein retai 27.4 1.2E+02 0.0026 26.2 4.5 59 143-206 129-191 (212)
43 PRK15049 L-asparagine permease 27.1 3.5E+02 0.0076 26.1 8.5 16 216-231 473-488 (499)
44 PF03600 CitMHS: Citrate trans 25.4 5E+02 0.011 23.4 10.9 15 23-37 116-130 (351)
45 KOG2887 Membrane protein invol 25.2 4.2E+02 0.0091 22.4 7.9 73 126-206 79-151 (175)
46 KOG2532 Permease of the major 24.7 3E+02 0.0065 26.6 7.5 139 6-147 263-412 (466)
47 PF06570 DUF1129: Protein of u 24.3 3.6E+02 0.0079 22.8 7.2 46 167-212 151-200 (206)
48 PRK15487 O-antigen ligase RfaL 22.8 6.5E+02 0.014 23.8 10.0 43 17-59 36-79 (400)
49 KOG3618 Adenylyl cyclase [Gene 22.2 7.9E+02 0.017 26.1 9.9 29 22-59 72-100 (1318)
50 KOG1621 1D-myo-inositol-tripho 21.5 22 0.00047 33.6 -1.0 29 210-238 275-303 (458)
51 PF13491 DUF4117: Domain of un 20.7 2.3E+02 0.0049 22.8 5.0 48 94-141 2-58 (171)
52 TIGR02896 spore_III_AF stage I 20.5 2.2E+02 0.0048 21.9 4.6 33 119-151 22-54 (106)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=7.9e-45 Score=315.89 Aligned_cols=208 Identities=48% Similarity=0.853 Sum_probs=183.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhcccccccCCeEeeeehhhHHHHHH
Q 025686 2 DIAHFLFGVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEI 81 (249)
Q Consensus 2 d~~~~ivg~l~~i~tv~m~~Splp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~v~~~N~~g~~l~~ 81 (249)
+....++|..|.++++++|++|+|+++||+|+||+|+.|..||+++.+||.+|+.||+ +.++|..++.+|++|+++..
T Consensus 3 ~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~--~~~~d~llitIN~~G~~ie~ 80 (243)
T KOG1623|consen 3 NVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGL--LKVHDYLLITINGIGLVIET 80 (243)
T ss_pred chHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhh--hccCceEEEEEehhcHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999997 56658999999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhhhhhccCcc-hhhhhhhhHHHHHHHHhhhhhhhhhhhhccCCCCc
Q 025686 82 IYVLIFLLFAPKKEKAKIFGLFMLVLTVFAAVALVSLLAFHGNA-RKIFCGFAATIFSIIMYASPLSIMRMVIKTKSVEF 160 (249)
Q Consensus 82 ~~l~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~lG~~~~~~ti~~f~sPl~~i~~viktks~~~ 160 (249)
+|+..|+.|+++|++.+.. .......++...++++...|+++ +.+.+|.+|.+++++||+|||..+++++|+||+|.
T Consensus 81 ~Yi~~f~~ya~~k~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~ 158 (243)
T KOG1623|consen 81 VYISIFLYYAPKKKTVKIV--LALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEY 158 (243)
T ss_pred HHHHHHheecCchheeEee--ehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceee
Confidence 9999999999987732221 11222233333445556667754 58899999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhhHHHhhhccCCCceEEeehhhHHHHHHHHhhheeeEcCCC
Q 025686 161 MPFFLSLFVFLCGTSWFVFGLLGRDPFVAVPNGFGCGLGTMQLILYFIYHKKG 213 (249)
Q Consensus 161 ~~~~~~~~~~~n~~lW~~YG~l~~d~~v~~~N~iG~~l~~~ql~l~~~y~~k~ 213 (249)
||++++.+.++++..|++||++++|.++.+||.+|++++++|+.+|++|++++
T Consensus 159 mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~~~~ 211 (243)
T KOG1623|consen 159 MPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYPKTT 211 (243)
T ss_pred echHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcCCCc
Confidence 99999999999999999999999999999999999999999999999999665
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.85 E-value=1.3e-21 Score=146.27 Aligned_cols=86 Identities=40% Similarity=0.621 Sum_probs=83.4
Q ss_pred hhhhhHHHHHHHHhhhhhhhhhhhhccCCCCcchhHHHHHHHHhhhHHHhhhccCCCceEEeehhhHHHHHHHHhhheee
Q 025686 129 FCGFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLGRDPFVAVPNGFGCGLGTMQLILYFI 208 (249)
Q Consensus 129 ~lG~~~~~~ti~~f~sPl~~i~~viktks~~~~~~~~~~~~~~n~~lW~~YG~l~~d~~v~~~N~iG~~l~~~ql~l~~~ 208 (249)
++|.+|++.++++++||++++++++|+|+++++|+.++++.++||.+|+.||++++|++++++|.+|.+++.+|+.+|++
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~~~~ 81 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVVYYI 81 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhheEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCC
Q 025686 209 YHKKGE 214 (249)
Q Consensus 209 y~~k~~ 214 (249)
|++|++
T Consensus 82 y~~~~~ 87 (87)
T PF03083_consen 82 YPSKKK 87 (87)
T ss_pred eCCCCC
Confidence 997653
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.83 E-value=7.2e-21 Score=142.18 Aligned_cols=86 Identities=27% Similarity=0.617 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhcccccccCCeEeeeehhhHHHHHHHHHHH
Q 025686 7 LFGVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLI 86 (249)
Q Consensus 7 ivg~l~~i~tv~m~~Splp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~v~~~N~~g~~l~~~~l~v 86 (249)
++|++|.+.++++++||+|++++++|+||++++++.|+++..+||.+|+.||+ +. +|++++.+|++|.+++.+|+.+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~--l~-~d~~i~~~N~~g~~~~~~~~~~ 78 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGI--LI-NDWPIIVPNVFGLVLSIIYLVV 78 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhh--hc-CCeeEEeeHHHHHHHHHHHHhh
Confidence 57899999999999999999999999999999999999999999999999996 44 6689999999999999999999
Q ss_pred HHhcCChhh
Q 025686 87 FLLFAPKKE 95 (249)
Q Consensus 87 ~~~y~~~~~ 95 (249)
|++|+++|+
T Consensus 79 ~~~y~~~~~ 87 (87)
T PF03083_consen 79 YYIYPSKKK 87 (87)
T ss_pred eEEeCCCCC
Confidence 999998864
No 4
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.48 E-value=4.1e-14 Score=123.71 Aligned_cols=90 Identities=27% Similarity=0.427 Sum_probs=84.3
Q ss_pred chhhhhhhhHHHHHHHHhhhhhhhhhhhhccCCCCcchhHHHHHHHHhhhHHHhhhccCC-CceEEeehhhHHHHHHHHh
Q 025686 125 ARKIFCGFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLGR-DPFVAVPNGFGCGLGTMQL 203 (249)
Q Consensus 125 ~~~~~lG~~~~~~ti~~f~sPl~~i~~viktks~~~~~~~~~~~~~~n~~lW~~YG~l~~-d~~v~~~N~iG~~l~~~ql 203 (249)
.....+|..|.++++++|.+|.++++|+.|+||+|+.+..|+++++++|.+|+.||.+.+ |..+...|.+|+++..+|+
T Consensus 4 ~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~~G~~ie~~Yi 83 (243)
T KOG1623|consen 4 VLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITINGIGLVIETVYI 83 (243)
T ss_pred hHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEehhcHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999887 8888889999999999999
Q ss_pred hheeeEcCCCC
Q 025686 204 ILYFIYHKKGE 214 (249)
Q Consensus 204 ~l~~~y~~k~~ 214 (249)
..|+.|.+|++
T Consensus 84 ~~f~~ya~~k~ 94 (243)
T KOG1623|consen 84 SIFLYYAPKKK 94 (243)
T ss_pred HHHheecCchh
Confidence 99999995554
No 5
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=3.4e-12 Score=94.16 Aligned_cols=81 Identities=20% Similarity=0.288 Sum_probs=76.6
Q ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhhccCCCCcchhHHHHHHHHhhhHHHhhhccCCCceEEeehhhHHHHHHHHhhhe
Q 025686 127 KIFCGFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLGRDPFVAVPNGFGCGLGTMQLILY 206 (249)
Q Consensus 127 ~~~lG~~~~~~ti~~f~sPl~~i~~viktks~~~~~~~~~~~~~~n~~lW~~YG~l~~d~~v~~~N~iG~~l~~~ql~l~ 206 (249)
.+.+|..|+.++.++| +||..+++|+||++++++.+++.....+++|+.||++++|.++...|.++..++.+-+...
T Consensus 5 ~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~~il~liIl~~k 81 (89)
T COG4095 5 IEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLIILFYK 81 (89)
T ss_pred hhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHH
Confidence 5678999999999999 8999999999999999999999999999999999999999999999999999999988877
Q ss_pred eeEc
Q 025686 207 FIYH 210 (249)
Q Consensus 207 ~~y~ 210 (249)
..|.
T Consensus 82 I~~~ 85 (89)
T COG4095 82 IKYI 85 (89)
T ss_pred HHHH
Confidence 7776
No 6
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=2.3e-11 Score=89.79 Aligned_cols=86 Identities=16% Similarity=0.223 Sum_probs=76.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhcccccccCCeEeeeehhhHHHHH
Q 025686 1 MDIAHFLFGVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIE 80 (249)
Q Consensus 1 ~d~~~~ivg~l~~i~tv~m~~Splp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~v~~~N~~g~~l~ 80 (249)
||...+..|..|...+. ++.+||..+++|+||++++|+.++......+++|++||+ +. ++.|+...|.++..++
T Consensus 1 m~~~~~viG~ia~iltt---f~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygI--Li-~~lPii~aN~i~~il~ 74 (89)
T COG4095 1 MDFFIEVIGTIAGILTT---FAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGI--LI-NDLPIIIANIISFILS 74 (89)
T ss_pred CcchhhhHHHHHHHHHH---HHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHH--HH-ccCcchhHHHHHHHHH
Confidence 78888899998888776 458999999999999999999999999999999999997 54 6689999999999999
Q ss_pred HHHHHHHHhcCC
Q 025686 81 IIYVLIFLLFAP 92 (249)
Q Consensus 81 ~~~l~v~~~y~~ 92 (249)
..-+....+|..
T Consensus 75 liIl~~kI~~~~ 86 (89)
T COG4095 75 LIILFYKIKYIL 86 (89)
T ss_pred HHHHHHHHHHHH
Confidence 998888777653
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=98.82 E-value=1.6e-07 Score=81.78 Aligned_cols=188 Identities=13% Similarity=0.057 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHh--------cccccccCCeEeeee----hhhH
Q 025686 9 GVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWY--------GLPFVSKNNILVSTI----NGTG 76 (249)
Q Consensus 9 g~l~~i~tv~m~~Splp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~Y--------G~~~l~~~~~~v~~~----N~~g 76 (249)
..+|.+..++-..+-+||+++++|+||++++|+..+..-..+...|..| .. . +..+.-.. |-+-
T Consensus 5 ~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~---~-~~~~~~~~~v~~edl~ 80 (220)
T TIGR00951 5 QILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSI---T-NEFPLSSPGVTQNDVF 80 (220)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhh---h-hccccccCCCcHHHHH
Confidence 3455555555567899999999999999999999999999999999999 32 2 22222211 3222
Q ss_pred -----HHHHHHHHHHHHhcCChhhHH--HHHHHHH-HHHHHHHHHHHhhhhhccCcchhhhhhhhHHHHHHHHhhhhhhh
Q 025686 77 -----SAIEIIYVLIFLLFAPKKEKA--KIFGLFM-LVLTVFAAVALVSLLAFHGNARKIFCGFAATIFSIIMYASPLSI 148 (249)
Q Consensus 77 -----~~l~~~~l~v~~~y~~~~~~~--~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~lG~~~~~~ti~~f~sPl~~ 148 (249)
.++......-+.+|.++.+|. +..+... ...+.++...........+.+....++.+-..++++-+ +||
T Consensus 81 ~ai~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~iky---iPQ 157 (220)
T TIGR00951 81 FTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKY---FPQ 157 (220)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH---hHH
Confidence 222222222223333321111 1111111 11111111111111111223444556666666666655 899
Q ss_pred hhhhhccCCCCcchhHHHHHHHHhhhHHHhhhcc-CCCceEEeehhhHHHHHHHHh
Q 025686 149 MRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLL-GRDPFVAVPNGFGCGLGTMQL 203 (249)
Q Consensus 149 i~~viktks~~~~~~~~~~~~~~n~~lW~~YG~l-~~d~~v~~~N~iG~~l~~~ql 203 (249)
++.-.|.||++++|......-+..+.--+.-... .+|...+.-..++..+..+-+
T Consensus 158 i~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~~~n~i~~ 213 (220)
T TIGR00951 158 AATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSSLFNGLFA 213 (220)
T ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888777775555444442 366666666777777666543
No 8
>PF04193 PQ-loop: PQ loop repeat
Probab=98.14 E-value=6.2e-06 Score=57.10 Aligned_cols=54 Identities=19% Similarity=0.248 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhcccccccC
Q 025686 10 VFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKN 65 (249)
Q Consensus 10 ~l~~i~tv~m~~Splp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~ 65 (249)
.+|.+..++...+.+||+++.+|+|+++++|...+.....+..+|+.|.+ +.++
T Consensus 4 ~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~--~~~~ 57 (61)
T PF04193_consen 4 ILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSI--LSNY 57 (61)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHH--HhcC
Confidence 34445555666889999999999999999999999999999999999996 4444
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=97.95 E-value=1.7e-05 Score=54.82 Aligned_cols=56 Identities=20% Similarity=0.386 Sum_probs=48.3
Q ss_pred hhhhhhHHHHHHHHhhhhhhhhhhhhccCCCCcchhHHHHHHHHhhhHHHhhhccCCCc
Q 025686 128 IFCGFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLGRDP 186 (249)
Q Consensus 128 ~~lG~~~~~~ti~~f~sPl~~i~~viktks~~~~~~~~~~~~~~n~~lW~~YG~l~~d~ 186 (249)
+.+|.++.++....+ +||+.+.+|+|+++++|+......+.++.+|+.|.+..++.
T Consensus 3 ~~~g~i~~~~~~~~~---lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~ 58 (61)
T PF04193_consen 3 NILGIISIVLWIISF---LPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYP 58 (61)
T ss_pred HHHHHHHHHHHHHHH---HhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356666666666655 99999999999999999999999999999999999988764
No 10
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=97.74 E-value=0.00043 Score=59.29 Aligned_cols=191 Identities=13% Similarity=0.132 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhcccccccCCeEeeeehhhHHHHHHHHHHHHHh
Q 025686 10 VFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLIFLL 89 (249)
Q Consensus 10 ~l~~i~tv~m~~Splp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~v~~~N~~g~~l~~~~l~v~~~ 89 (249)
.+|..+...-..--+||+-+|+..||++++|...+..-.++-..-+.|.+ ..+..+.-+--..=++++.+-+..+..
T Consensus 33 lLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~---~~g~pFss~gE~~fLl~Q~vili~~if 109 (230)
T KOG3211|consen 33 LLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSY---TSGYPFSSYGEYPFLLLQAVILILCIF 109 (230)
T ss_pred hhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehh---hcCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 33433333333558999999999999999999999999999999999995 555444333334445555544444333
Q ss_pred -cCChh-hHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhhHHHHHHHHhhhhhhhhhhhhccCCCCcchhHHHH
Q 025686 90 -FAPKK-EKAKIFGLFMLVLTVFAAVALVSLLAFHGNARKIFCGFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSL 167 (249)
Q Consensus 90 -y~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lG~~~~~~ti~~f~sPl~~i~~viktks~~~~~~~~~~ 167 (249)
|+... ...+.+.....+...+ ........++-...+...-+.-.+-+.|+..-+|+|+++.+++....
T Consensus 110 ~f~~~~~~~v~~l~~~~~v~~~~----------~sk~~p~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it~f 179 (230)
T KOG3211|consen 110 HFSGQTVTVVQFLGYIALVVSVL----------ASKALPLWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLITVF 179 (230)
T ss_pred HhccceeehhhHHHHHHHHHHHH----------HHhhhhHHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhHHHHHH
Confidence 33111 1111222222111000 11122223333333333334447789999999999999999999999
Q ss_pred HHHHhhhHHHhhhccC-CCceEEeehhhHHHHHHHHhhheeeEcCCC
Q 025686 168 FVFLCGTSWFVFGLLG-RDPFVAVPNGFGCGLGTMQLILYFIYHKKG 213 (249)
Q Consensus 168 ~~~~n~~lW~~YG~l~-~d~~v~~~N~iG~~l~~~ql~l~~~y~~k~ 213 (249)
.++-.|.--..|.... +|..+...-.+..+++.+-..=..+|++++
T Consensus 180 Lsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~ 226 (230)
T KOG3211|consen 180 LSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWSTA 226 (230)
T ss_pred HHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 9999999999999986 567776667777777766666566666544
No 11
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=97.05 E-value=0.0094 Score=53.29 Aligned_cols=171 Identities=14% Similarity=0.065 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhcccccccCCeEeeeehhhHHHHHHHHHH
Q 025686 6 FLFGVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVL 85 (249)
Q Consensus 6 ~ivg~l~~i~tv~m~~Splp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~v~~~N~~g~~l~~~~l~ 85 (249)
+....+|++.++|-..+-+||+.+..|+|+.+++|+.+.+.-.+....=+.|.. +. +--++...-..=..++-..+.
T Consensus 7 ~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~--l~-~~~~~~~~~~~yy~~~d~~l~ 83 (260)
T KOG2913|consen 7 TLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFF--LQ-PLGSTLKVQAVYYTLADSVLF 83 (260)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHH--hc-ccchhHHHHHHHHHHHHHHHH
Confidence 455667788888888899999999999999999999999988888888888885 33 322222212222222323334
Q ss_pred HHHhcCChhhH---------HH-HHHH---HH----------------HHHHHHHHHHHhhhh---hc--cC--c-chhh
Q 025686 86 IFLLFAPKKEK---------AK-IFGL---FM----------------LVLTVFAAVALVSLL---AF--HG--N-ARKI 128 (249)
Q Consensus 86 v~~~y~~~~~~---------~~-~~~~---~~----------------~~~~~~~~~~l~~~~---~~--~~--~-~~~~ 128 (249)
+...|.+++.+ .+ ..+. .. ......+.+...... .. .. + ...+
T Consensus 84 ~q~~yy~~~~~~~pll~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (260)
T KOG2913|consen 84 VQCLYYGNIYPREPLLPVPSFRSLLGGLEALLILSIKLFSPRFVKWPVVALGFLAIVFLICGAAYESLLRAVRVNGLEID 163 (260)
T ss_pred HHHHhcchhcccCccccccchhhhhcchHHHHHHHhhccCcchhhccchhhhhHHHHHHHHHHHhhccccccccchhhhc
Confidence 44444433222 00 0000 00 000001111111110 01 11 2 2334
Q ss_pred hhhhhHH-HHHHHHhhhhhhhhhhhhccCCCCcchhHHHHHHHHhhhHHHhhhcc
Q 025686 129 FCGFAAT-IFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLL 182 (249)
Q Consensus 129 ~lG~~~~-~~ti~~f~sPl~~i~~viktks~~~~~~~~~~~~~~n~~lW~~YG~l 182 (249)
.+|.+.. +...+-.++++||+..-+|.|+++++++.++...... =..|+.-
T Consensus 164 ~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~---n~~y~~s 215 (260)
T KOG2913|consen 164 SLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLG---NTTYILS 215 (260)
T ss_pred chHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHcc---ccccccc
Confidence 5666444 5555667899999999999999999998666554444 4566655
No 12
>PHA02246 hypothetical protein
Probab=96.32 E-value=0.2 Score=41.30 Aligned_cols=178 Identities=18% Similarity=0.225 Sum_probs=93.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhcccccccCC--eEeeeehhhHHH
Q 025686 1 MDIAHFLFGVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNN--ILVSTINGTGSA 78 (249)
Q Consensus 1 ~d~~~~ivg~l~~i~tv~m~~Splp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~--~~v~~~N~~g~~ 78 (249)
||.....+..+= ++..-....|+.+.+.|.|+.+++|- .|+-......+--.|-+ +..++ +.++. -..-+.
T Consensus 1 md~~~~~~s~~y---ailit~gYipgL~slvk~~nv~GvS~-~FWYLi~~tvgiSfyNl--L~T~~~~fqi~s-vg~nl~ 73 (192)
T PHA02246 1 MDNLSHYLSILY---AILITVGYIPGLVALVKAESVKGVSN-YFWYLIVATVGISFYNL--LLTDASVFQIVS-VGLNLT 73 (192)
T ss_pred CchHHHHHHHHH---HHHHHhhhhhhHHHHhhhcccccHHH-HHHHHHHHHHHHHHHHH--HhcCCceEEEee-eehhhh
Confidence 676666555543 33334568999999999999999874 44555555666777876 44332 33332 233345
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhhHHHHHHHHhhhhhhhhhhhhccCCC
Q 025686 79 IEIIYVLIFLLFAPKKEKAKIFGLFMLVLTVFAAVALVSLLAFHGNARKIFCGFAATIFSIIMYASPLSIMRMVIKTKSV 158 (249)
Q Consensus 79 l~~~~l~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lG~~~~~~ti~~f~sPl~~i~~viktks~ 158 (249)
++++.+.+-- |+ +|......+.. .++.+. . .+.+ ..++--.+|+..-+..| .+|+.+-+|||++
T Consensus 74 lgivcLlv~~-~r---kkd~f~~~fii---ifSLll-f---ll~~--~~evtQtVat~tIiLaY---i~QIIqfyKTK~S 137 (192)
T PHA02246 74 LGIVCLLVAS-YR---KKDYFSIPFII---VFSLLL-F---LLSD--FTALTQTVATITIILAY---VTQITTFYKTKSA 137 (192)
T ss_pred hhhhheeeeh-hh---ccccccchHHH---HHHHHH-H---HHhh--hHHHHHHHHHHHHHHHH---HHHHHHHhhhccc
Confidence 5555554322 21 22211111111 112111 1 1111 11222223333333334 7899999999999
Q ss_pred CcchhHHHHHHHHhhhHHHhhhccCCC--ceEEee---hhhHHHHHHHH
Q 025686 159 EFMPFFLSLFVFLCGTSWFVFGLLGRD--PFVAVP---NGFGCGLGTMQ 202 (249)
Q Consensus 159 ~~~~~~~~~~~~~n~~lW~~YG~l~~d--~~v~~~---N~iG~~l~~~q 202 (249)
|+.++..++.-.. ++.-+.....+.+ .++++. |.+=.+.|-.|
T Consensus 138 Eg~n~~l~lii~~-GL~~L~~~m~Lthv~~hIiiTEf~N~iLiLiCy~q 185 (192)
T PHA02246 138 EGTNRFLFLIIGL-GLASLIVSMVLTHTYVHIIATEFVNFVLILICYLQ 185 (192)
T ss_pred CCCChhHHHHHHH-HHHHHHHHHhhhCCcceeeHHHHHHHHHHHHHHHH
Confidence 9998877754333 2333444555544 455544 55555555444
No 13
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.38 E-value=0.48 Score=47.18 Aligned_cols=188 Identities=14% Similarity=0.166 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCccchhH-HHHHHHHHHHHHhcccccccCCeEeeeehhhHHHHHHHHH
Q 025686 6 FLFGVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPY-VMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYV 84 (249)
Q Consensus 6 ~ivg~l~~i~tv~m~~Splp~i~~i~k~kst~~~s~~p~-~~~~~n~~lW~~YG~~~l~~~~~~v~~~N~~g~~l~~~~l 84 (249)
..+|++|-+.- ..--+-|-..-.|+|. ++-|.-| .....++.+-+.||+ +. +|.+++.-..+|.++..=-+
T Consensus 11 ~~~G~~~q~~F---~~rf~~QW~~sek~~~--s~~p~~FW~~Sl~g~~~l~~y~~--~~-~~~~~~~~q~~~~~iy~rNl 82 (608)
T PRK01021 11 YPLGLFANLFF---GSAFCIQWFLSKKRKY--SYVPKIFWILSSIGAVLMICHGF--IQ-SQFPIALLHSFNLIIYFRNL 82 (608)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHhcCC--ccCchHHHHHHHHHHHHHHHHHH--Hh-cCCcEEEecccceEEEeehh
Confidence 34555554332 2333444444444443 3444444 677888999999996 44 45667766666654311111
Q ss_pred HHHHhcCChhhH-HHHHHHHHHHHHHHH-HHHHhhhh--hc---------cC--cchh---hhhhhhHHHHHHHHhhhhh
Q 025686 85 LIFLLFAPKKEK-AKIFGLFMLVLTVFA-AVALVSLL--AF---------HG--NARK---IFCGFAATIFSIIMYASPL 146 (249)
Q Consensus 85 ~v~~~y~~~~~~-~~~~~~~~~~~~~~~-~~~l~~~~--~~---------~~--~~~~---~~lG~~~~~~ti~~f~sPl 146 (249)
.. ...++.- +....++....++++ -+.+.++. .. ++ ++.. ..+|++|.++-..-| +
T Consensus 83 ~l---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~f~~Rf---~ 156 (608)
T PRK01021 83 NI---ASSRPLSVSKTLSLLVLSATAITLPFAIGTRYYPNMTWMASPNIFHLPLPPANLSWHLIGCIGLTIFSLRF---F 156 (608)
T ss_pred hh---cccccchHHHHHHHHHhhhHhhhhHHHHHHHHhcCcchhhhHHHhhCCCcchhHHHHHHHHHHHHHHHHHH---H
Confidence 11 1111111 112112221111111 01111111 11 11 1222 346777766655555 3
Q ss_pred hhhhhhhccCCCCcchhHHHHHHHHhhhHHHhhhccCCCceEEeehhhHHHHHHHHhhheee
Q 025686 147 SIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLGRDPFVAVPNGFGCGLGTMQLILYFI 208 (249)
Q Consensus 147 ~~i~~viktks~~~~~~~~~~~~~~n~~lW~~YG~l~~d~~v~~~N~iG~~l~~~ql~l~~~ 208 (249)
-|-..- +++.-+.+|..-...+++.+++=++|++.++|+-.+....+|.+...=.+.+...
T Consensus 157 ~Qw~~s-e~~~~s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv~i~g~~~g~~~y~rnl~li~~ 217 (608)
T PRK01021 157 IQWFYL-EYNNQSALPALFWKASLLGGSLALLYFIRTGDPVNILCYGCGLFPSLANLRIAYK 217 (608)
T ss_pred HHHHHH-HhcCCCCCcHHHHHHHHHhHHHHHHHHHHhCCceEEEccccchhHHHHHHHHHHh
Confidence 343333 3334456798888999999999999999999999999999999877777744333
No 14
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=95.36 E-value=0.023 Score=49.60 Aligned_cols=50 Identities=16% Similarity=0.196 Sum_probs=43.9
Q ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhhccCCCCcchhHHHHHHHHhhhHHHhh
Q 025686 127 KIFCGFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVF 179 (249)
Q Consensus 127 ~~~lG~~~~~~ti~~f~sPl~~i~~viktks~~~~~~~~~~~~~~n~~lW~~Y 179 (249)
...+|....++....+ +||+.+.+|+||++++|+.......+....|..|
T Consensus 4 S~~lG~~~~~~~~~~~---~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 4 SQILGWGYVAAWSISF---YPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHHHHHH---hhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 3467777777777766 8999999999999999999999999999999999
No 15
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=94.93 E-value=0.024 Score=33.83 Aligned_cols=27 Identities=30% Similarity=0.186 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHhcCCCCccchhHHHHH
Q 025686 22 APTITFRRIVRRKSTEQFSGIPYVMTL 48 (249)
Q Consensus 22 Splp~i~~i~k~kst~~~s~~p~~~~~ 48 (249)
+-+||+++++|+|+++++|+..+....
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~ 28 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWL 28 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHH
Confidence 568999999999999999976665443
No 16
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=92.82 E-value=0.097 Score=31.09 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=23.0
Q ss_pred hhhhhhhhhhccCCCCcchhHHHHHHHH
Q 025686 144 SPLSIMRMVIKTKSVEFMPFFLSLFVFL 171 (249)
Q Consensus 144 sPl~~i~~viktks~~~~~~~~~~~~~~ 171 (249)
+-+||+.+++|+|+++++|+...+..+.
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 4579999999999999999887765443
No 17
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.32 E-value=0.22 Score=38.53 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=51.9
Q ss_pred hcCCCCccchhHHHHHHHHHHHHHhcccccccCCeEeeeehhhHHHHHHHHHHHHHhcC
Q 025686 33 RKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLIFLLFA 91 (249)
Q Consensus 33 ~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~v~~~N~~g~~l~~~~l~v~~~y~ 91 (249)
.|..+.+|.............|..|++ .+...++.++.+|.+=.+.+.+++.=.+.|.
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySl-VI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~ 100 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSL-VITPKNYSLFSVNFFVAITGIYQLTRIANYQ 100 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeE-EEeccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999998 4556778999999999999999999888884
No 18
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=89.71 E-value=0.21 Score=39.48 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=52.7
Q ss_pred hcCCCCccchhHHHHHHHHHHHHHhcccccccCCeEeeeehhhHHHHHHHHHHHHHhcCCh
Q 025686 33 RKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLIFLLFAPK 93 (249)
Q Consensus 33 ~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~v~~~N~~g~~l~~~~l~v~~~y~~~ 93 (249)
+|..+.+|..+-...++.+.+|+.|++ .+...|+.++.+|.+-...+.+++.=++.|...
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~-~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~ 98 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSL-VITPRNYLLFACNFFNATTQLYQLYRKLNYQYS 98 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHhe-eecCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 588999999999999999999999998 455778889999999999999999877777643
No 19
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=87.85 E-value=0.16 Score=40.01 Aligned_cols=76 Identities=17% Similarity=0.132 Sum_probs=59.1
Q ss_pred hhhhHHHHHHHHhhhhhhhhhhhhccCCCCcchhHHHHHHHHhhhHHHhhhccC--CCceEEeehhhHHHHHHHHhhhee
Q 025686 130 CGFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLG--RDPFVAVPNGFGCGLGTMQLILYF 207 (249)
Q Consensus 130 lG~~~~~~ti~~f~sPl~~i~~viktks~~~~~~~~~~~~~~n~~lW~~YG~l~--~d~~v~~~N~iG~~l~~~ql~l~~ 207 (249)
+-+.|.++.-..-++++.++ +|..|.+|..+..+-++.+.+|.-|++.+ +|+.++..|.+-...+..|+.=+.
T Consensus 19 ~hFWaP~~kWgl~iA~i~D~-----~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~ 93 (119)
T PF03650_consen 19 THFWAPVAKWGLPIAGIADM-----KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKL 93 (119)
T ss_pred EEeehhheeheeeeeehhhc-----CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444433334444443 58999999999999999999999999998 688888889999999999998777
Q ss_pred eEc
Q 025686 208 IYH 210 (249)
Q Consensus 208 ~y~ 210 (249)
.|.
T Consensus 94 ~y~ 96 (119)
T PF03650_consen 94 NYQ 96 (119)
T ss_pred HHH
Confidence 776
No 20
>PHA02246 hypothetical protein
Probab=84.38 E-value=9 Score=31.81 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=28.7
Q ss_pred HHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHH
Q 025686 15 TALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLN 50 (249)
Q Consensus 15 ~tv~m~~Splp~i~~i~k~kst~~~s~~p~~~~~~n 50 (249)
.++...+..+||+.+-+|+|+.|+.|+.-|+.....
T Consensus 116 at~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~G 151 (192)
T PHA02246 116 ATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLG 151 (192)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHH
Confidence 445556789999999999999999998877655444
No 21
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.07 E-value=0.28 Score=38.02 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=50.4
Q ss_pred cCCCCcchhHHHHHHHHhhhHHHhhhccC--CCceEEeehhhHHHHHHHHhhheeeEc
Q 025686 155 TKSVEFMPFFLSLFVFLCGTSWFVFGLLG--RDPFVAVPNGFGCGLGTMQLILYFIYH 210 (249)
Q Consensus 155 tks~~~~~~~~~~~~~~n~~lW~~YG~l~--~d~~v~~~N~iG~~l~~~ql~l~~~y~ 210 (249)
.|..|.+|..-.++-+..++.|.-|++.+ +|+.+.-.|.+-.+.+..|+.=.+.|.
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~ 100 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQ 100 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999998 789999999999999999999888885
No 22
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=83.02 E-value=9.9 Score=31.50 Aligned_cols=125 Identities=10% Similarity=0.114 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhcccccccCCeEeeeehhhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhhhhhccCc
Q 025686 45 VMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLIFLLFAPKKEKAKIFGLFMLVLTVFAAVALVSLLAFHGN 124 (249)
Q Consensus 45 ~~~~~n~~lW~~YG~~~l~~~~~~v~~~N~~g~~l~~~~l~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 124 (249)
......|.++...-. +.+. + +-+....++..-..+..++++ +.....+....... .....+
T Consensus 30 ~~~~~~~~~~~ihf~--LLGa-~----taa~~~~ls~~R~~~s~~~~~----~~v~~~Fi~~~~~~--------~~~~~~ 90 (163)
T PF10688_consen 30 LLQAISCLLFAIHFA--LLGA-W----TAALSMLLSAVRNFVSIRTRS----RWVMAVFIALSLVM--------GLFTWQ 90 (163)
T ss_pred HHHHHHHHHHHHHHH--HhCh-H----HHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHH--------HHHHHh
Confidence 444555555555443 3322 2 456667777777777666554 11111111111111 112235
Q ss_pred chhhhhhhhHHHHHHHHhhhhhhhhhhhhccCCCCcchhHHHHHHHHhhhHHHhhhccCCCceEEeehhhHHHHHHHHh
Q 025686 125 ARKIFCGFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLGRDPFVAVPNGFGCGLGTMQL 203 (249)
Q Consensus 125 ~~~~~lG~~~~~~ti~~f~sPl~~i~~viktks~~~~~~~~~~~~~~n~~lW~~YG~l~~d~~v~~~N~iG~~l~~~ql 203 (249)
...+.++.+|++....... ++ +++... +...+++.+|..|++..+++....-|........+.+
T Consensus 91 g~~~~l~~~as~~~t~a~f----------~~---~~~~mR--~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n~~~i 154 (163)
T PF10688_consen 91 GWIELLPYAASVLGTIALF----------ML---DGIKMR--ILMLVGTLCWLIYNILIGSWGGTLMEALFIISNLITI 154 (163)
T ss_pred hHHHHHHHHHHHHHHHHHH----------hc---CchhHH--HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 5667788877766555431 11 233322 4578999999999999999888888887777666554
No 23
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=81.20 E-value=3.1 Score=36.05 Aligned_cols=72 Identities=14% Similarity=0.148 Sum_probs=60.1
Q ss_pred HHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhcccccccCCeEeeeehhhHHHHHHHHHHHHHhcCCh
Q 025686 20 FLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLIFLLFAPK 93 (249)
Q Consensus 20 ~~Splp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~v~~~N~~g~~l~~~~l~v~~~y~~~ 93 (249)
..|-++|+..-+|+|++|..|.+.....+..|..=++|.. ..++|+.+...-++...++.+-..-..+|.+.
T Consensus 154 v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsi--q~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~ 225 (230)
T KOG3211|consen 154 VVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSI--QETGDFLMLLRFVISLALNGLITAQVLRYWST 225 (230)
T ss_pred hHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHH--HhcCChhhHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 3678999999999999999999999999999999999997 56787877777777778877766666666543
No 24
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=77.62 E-value=4.6 Score=29.09 Aligned_cols=65 Identities=14% Similarity=0.297 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHhhhhhhhhhhhhccCCCCcchhHHHHHHHHhhhHHHhhhccCCCceEEeehhhHHHHH
Q 025686 131 GFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLGRDPFVAVPNGFGCGLG 199 (249)
Q Consensus 131 G~~~~~~ti~~f~sPl~~i~~viktks~~~~~~~~~~~~~~n~~lW~~YG~l~~d~~v~~~N~iG~~l~ 199 (249)
|.+|.++-..-| +-|-..--|+|. +.+|..-...+.+.+.+=++||+.++|...+....+|.+..
T Consensus 2 G~~gq~lF~~Rf---~~QW~~SEk~k~-sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilgq~~gl~iy 66 (72)
T PF07578_consen 2 GFIGQLLFSSRF---IVQWIYSEKAKK-SVVPVAFWYLSLIGSLLLLIYAIIRKDPVFILGQSFGLFIY 66 (72)
T ss_pred cHHHHHHHHHHH---HHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHhcChHHH
Confidence 444444433333 334333334443 45688888999999999999999999997766667666543
No 25
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=73.29 E-value=7.1 Score=34.97 Aligned_cols=58 Identities=14% Similarity=0.012 Sum_probs=45.9
Q ss_pred chhhhhhhhHHHHHHHHhhhhhhhhhhhhccCCCCcchhHHHHHHHHhhhHHHhhhccCCC
Q 025686 125 ARKIFCGFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLGRD 185 (249)
Q Consensus 125 ~~~~~lG~~~~~~ti~~f~sPl~~i~~viktks~~~~~~~~~~~~~~n~~lW~~YG~l~~d 185 (249)
......|.+..++....+ .||+.+..|+|+.+++|+...+...+....=+.|..+.+-
T Consensus 7 ~~s~~~g~ls~~~w~v~~---iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~ 64 (260)
T KOG2913|consen 7 TLSTILGILSTVCWCVQL---IPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPL 64 (260)
T ss_pred HHHHHHHHHHHHhhhhhh---hhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhccc
Confidence 344456666666666655 7999999999999999999999888888888888877753
No 26
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=60.79 E-value=1.3e+02 Score=27.77 Aligned_cols=134 Identities=17% Similarity=0.164 Sum_probs=65.9
Q ss_pred HhhHHHHHHHHHhcCCCCccchhHH--------HHHHHHHHHHHhccccccc--------CCeEeeeeh-----hhHHHH
Q 025686 21 LAPTITFRRIVRRKSTEQFSGIPYV--------MTLLNCLLSAWYGLPFVSK--------NNILVSTIN-----GTGSAI 79 (249)
Q Consensus 21 ~Splp~i~~i~k~kst~~~s~~p~~--------~~~~n~~lW~~YG~~~l~~--------~~~~v~~~N-----~~g~~l 79 (249)
.|..||++--+|+||+.++|+=-.+ -+..|+.+ .|.. .+.+ +..|+. .| .=|+++
T Consensus 137 ISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~l--y~~~-~iq~~y~~~~p~g~~pv~-~nDv~fslHa~lm 212 (372)
T KOG3145|consen 137 ISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLL--YYCP-KIQNQYDTSYPLGVPPVT-LNDVVFSLHAVLM 212 (372)
T ss_pred eeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHH--HhcH-HhccceeccCCCCCCccc-hhhhhhhHHHHHH
Confidence 4788999999999999988752111 11222221 1111 1111 111222 12 234555
Q ss_pred HHHHHHHHHhcCChhhHH--H-HHHHHHHHHHHHHHHHHhhhhhccCc----chhhhhhhhHHHHHHHHhhhhhhhhhhh
Q 025686 80 EIIYVLIFLLFAPKKEKA--K-IFGLFMLVLTVFAAVALVSLLAFHGN----ARKIFCGFAATIFSIIMYASPLSIMRMV 152 (249)
Q Consensus 80 ~~~~l~v~~~y~~~~~~~--~-~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~lG~~~~~~ti~~f~sPl~~i~~v 152 (249)
..+-+.-+..|.+..+|. . .++.+.+ ..+++....+ .+...+ +....+..+=...|.+=| +||...-
T Consensus 213 t~Iti~Qc~~yeR~~q~vs~~ialgil~i-~~~f~~~~~~--va~~~~~~wL~f~~~~syiKl~mTliKY---iPQa~mN 286 (372)
T KOG3145|consen 213 TVITILQCFFYERGWQRVSKGIALGILAI-FWLFAVVFMY--VAYWYVIRWLAFLNNLSYIKLAMTLIKY---IPQAYMN 286 (372)
T ss_pred HHHHHHHHHhhhhcccccchhHHHHHHHH-HHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHhhc
Confidence 666666666676654432 1 2222211 1122221111 011111 122334444445555556 7899999
Q ss_pred hccCCCCcchhH
Q 025686 153 IKTKSVEFMPFF 164 (249)
Q Consensus 153 iktks~~~~~~~ 164 (249)
.++||+++.|..
T Consensus 287 ~tRKSt~gwsIg 298 (372)
T KOG3145|consen 287 FTRKSTVGWSIG 298 (372)
T ss_pred ceeccccccccc
Confidence 999999988743
No 27
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=59.93 E-value=1.8e+02 Score=28.69 Aligned_cols=167 Identities=19% Similarity=0.126 Sum_probs=107.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhcccccc-cCCeEeeeehhhHHHHHHHHHHH-----
Q 025686 13 NATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVS-KNNILVSTINGTGSAIEIIYVLI----- 86 (249)
Q Consensus 13 ~i~tv~m~~Splp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~-~~~~~v~~~N~~g~~l~~~~l~v----- 86 (249)
.+-++.=|++-=.++--+.|+||-+++|.-..+.-++++..=++|=+ . .-++.|.++-++|+++..+=+--
T Consensus 326 ~lH~vFdfLAFKNDIqFWn~rKsmeGLS~rsvl~~~F~s~IIflYll---DneTs~mVlvs~gvG~~IE~WKi~K~m~v~ 402 (592)
T KOG2489|consen 326 ILHSVFDFLAFKNDIQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYLL---DNETSFMVLVSVGVGLLIELWKIKKAMKVE 402 (592)
T ss_pred HHHHHHHHHHhcchHHHhccccccccccHHHHHHHHHHHHhhhheee---cCCccEEEEEeccceeeeeeeecceEEEEE
Confidence 33455556666677778889999999999999999999999888885 4 33456778888888876543210
Q ss_pred -------H-----------HhcCChhhH---HHHHHHHHHHH--HHHHHHHHhhhh-hccCcchhhhhhhhHHHHHHHHh
Q 025686 87 -------F-----------LLFAPKKEK---AKIFGLFMLVL--TVFAAVALVSLL-AFHGNARKIFCGFAATIFSIIMY 142 (249)
Q Consensus 87 -------~-----------~~y~~~~~~---~~~~~~~~~~~--~~~~~~~l~~~~-~~~~~~~~~~lG~~~~~~ti~~f 142 (249)
. =.|+.++.+ +...+.+..++ .++++ .+++++ ..|..-...++-.+.+.+-.+-|
T Consensus 403 id~~g~i~gv~pRl~f~dkgsysE~~Tk~yD~~A~kYLs~~L~PL~vg~-aVYSLlY~~hKsWYSWvLn~l~~~vy~FGF 481 (592)
T KOG2489|consen 403 IDWSGLIPGVLPRLSFSDKGSYSESKTKEYDDQAMKYLSYLLFPLLVGG-AVYSLLYVEHKSWYSWVLNSLYNGVYAFGF 481 (592)
T ss_pred EecccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHH-HHHhhhhcccccHHHHHHHHHHhHHHHHHH
Confidence 0 011111111 11222222211 11121 223322 23445566777777777777777
Q ss_pred hhhhhhhhhhhccCCCCcchhHHHHHHHHhhhHHHhhhccC
Q 025686 143 ASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLG 183 (249)
Q Consensus 143 ~sPl~~i~~viktks~~~~~~~~~~~~~~n~~lW~~YG~l~ 183 (249)
.--+||+---+|=||++.+|-.+..==++|.+.==+++..+
T Consensus 482 i~M~PQLFINYKLKSVAHLPWR~~tYKa~NTFIDDlFAFVI 522 (592)
T KOG2489|consen 482 IFMLPQLFINYKLKSVAHLPWRAFTYKAFNTFIDDLFAFVI 522 (592)
T ss_pred HHhChHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999888888877654554443
No 28
>COG3952 Predicted membrane protein [Function unknown]
Probab=56.40 E-value=8.2 Score=29.86 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=48.1
Q ss_pred hhccCCCCcchhHHHHHHHHhhhHHHhhhccCCCceEEeehhhHHHHHHHHhhheee
Q 025686 152 VIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLGRDPFVAVPNGFGCGLGTMQLILYFI 208 (249)
Q Consensus 152 viktks~~~~~~~~~~~~~~n~~lW~~YG~l~~d~~v~~~N~iG~~l~~~ql~l~~~ 208 (249)
..+.++.+.+|.+-.-++.+.+.+-+.|.+-++|..-+..|.+|+..++..+-+...
T Consensus 47 ~se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~l~nL~L~~k 103 (113)
T COG3952 47 ASEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIYLRNLWLIIK 103 (113)
T ss_pred HHHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHHHHHHHHHHH
Confidence 356777888999999999999999999999999987777899999988877755443
No 29
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=55.32 E-value=27 Score=25.14 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhcccccccCCeEeeeehhhHHHH
Q 025686 22 APTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAI 79 (249)
Q Consensus 22 Splp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~v~~~N~~g~~l 79 (249)
--+-|-..-.|+|. ..++..-.......+.+=+.||+ . .+|+..+....+|.+.
T Consensus 12 Rf~~QW~~SEk~k~-sv~P~~FW~lSl~Gs~lll~Y~i--~-r~DpV~ilgq~~gl~i 65 (72)
T PF07578_consen 12 RFIVQWIYSEKAKK-SVVPVAFWYLSLIGSLLLLIYAI--I-RKDPVFILGQSFGLFI 65 (72)
T ss_pred HHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHH--H-HcChHHHHHHhcChHH
Confidence 34455555555554 33444555778899999999996 4 4656444444555443
No 30
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=49.88 E-value=42 Score=29.95 Aligned_cols=43 Identities=26% Similarity=0.284 Sum_probs=27.5
Q ss_pred HHhhhHHHhhhccC---CCceEEeehhhHHHHHHHHhhheeeEcCC
Q 025686 170 FLCGTSWFVFGLLG---RDPFVAVPNGFGCGLGTMQLILYFIYHKK 212 (249)
Q Consensus 170 ~~n~~lW~~YG~l~---~d~~v~~~N~iG~~l~~~ql~l~~~y~~k 212 (249)
++.+-.|..||+.- ++..--.-|.+|+.+.++-..+|..-.++
T Consensus 93 ~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~ 138 (254)
T PF07857_consen 93 CLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSE 138 (254)
T ss_pred HHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCC
Confidence 34444555577764 33333344999999999998888665533
No 31
>PF15102 TMEM154: TMEM154 protein family
Probab=49.69 E-value=28 Score=28.51 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=18.0
Q ss_pred eEEeehhhHHHHHHHHhhheeeEcCCCCCC
Q 025686 187 FVAVPNGFGCGLGTMQLILYFIYHKKGEPE 216 (249)
Q Consensus 187 ~v~~~N~iG~~l~~~ql~l~~~y~~k~~~~ 216 (249)
.|++|-+++.++-+.-.++..+|+||+.+.
T Consensus 60 mIlIP~VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 60 MILIPLVLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred EEeHHHHHHHHHHHHHHHheeEEeecccCC
Confidence 556776666555555566666666665533
No 32
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=47.72 E-value=15 Score=30.39 Aligned_cols=37 Identities=11% Similarity=0.111 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcccccccCCeEeeeehhhHHHHHHHHH
Q 025686 45 VMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYV 84 (249)
Q Consensus 45 ~~~~~n~~lW~~YG~~~l~~~~~~v~~~N~~g~~l~~~~l 84 (249)
..+.+++.+|+.|++ +. +.++....|......+.+.+
T Consensus 118 ~~~l~~~~~w~~~n~--~i-gS~~g~l~e~~~~~~n~~~i 154 (163)
T PF10688_consen 118 ILMLVGTLCWLIYNI--LI-GSWGGTLMEALFIISNLITI 154 (163)
T ss_pred HHHHHHHHHHHHHHH--HH-cCHHHHHHHHHHHHHHHHHH
Confidence 568999999999996 44 55777777888777776644
No 33
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=40.08 E-value=44 Score=30.98 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=38.2
Q ss_pred cchhHHHHHHHHHHHHHhcccccccCCeEeeeehhhHHHHHHHHHHHHHhcCChh
Q 025686 40 SGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLIFLLFAPKK 94 (249)
Q Consensus 40 s~~p~~~~~~n~~lW~~YG~~~l~~~~~~v~~~N~~g~~l~~~~l~v~~~y~~~~ 94 (249)
+..|..+...-+..|-.|.. ......++.+|.+|..++..-++.++.++|++
T Consensus 242 aLvPPa~~~Gi~la~g~~~~---a~ga~~L~~~Nl~~I~la~~~vf~~~g~~p~~ 293 (325)
T TIGR00341 242 SLLPPAVATGILLVISPLPL---AVKSLILTLINVAGLMAGSLAGVYVYGIRAYR 293 (325)
T ss_pred HhhchHHHHHHHHHhccHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 44566666666666666664 23446688999999999999888888888764
No 34
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=39.84 E-value=61 Score=31.06 Aligned_cols=70 Identities=23% Similarity=0.193 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhcccccc-cCCeEeeeehhhHHHHHHHH
Q 025686 11 FGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVS-KNNILVSTINGTGSAIEIIY 83 (249)
Q Consensus 11 l~~i~tv~m~~Splp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~-~~~~~v~~~N~~g~~l~~~~ 83 (249)
+..+-+++=|++-=.++.-++++||.+++|....+.-+++...=++|=+ . +-.+.|.+++++|+++..+=
T Consensus 305 vs~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL~---D~~ts~lil~~~gig~~ie~WK 375 (438)
T PF05602_consen 305 VSLLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYLL---DNETSWLILVPSGIGLLIEAWK 375 (438)
T ss_pred HHHHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeEE---eCCCcEEeehHhHhHHhHhhee
Confidence 4445577778888899999999999999999888887777777777764 3 33457889999999988753
No 35
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=39.34 E-value=51 Score=28.78 Aligned_cols=54 Identities=19% Similarity=0.153 Sum_probs=44.4
Q ss_pred ccCcchhhhhhhhHHHHHHHHhhhhhhhhhhhhccCCCCcchhHHHHHHHHhhh
Q 025686 121 FHGNARKIFCGFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGT 174 (249)
Q Consensus 121 ~~~~~~~~~lG~~~~~~ti~~f~sPl~~i~~viktks~~~~~~~~~~~~~~n~~ 174 (249)
.+++..++.+|+.|++.+..|-+--=-.+|+.+-..|.++.+.-+...+++|-+
T Consensus 126 ~DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~ 179 (290)
T KOG4314|consen 126 ADNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLC 179 (290)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 344667889999999999998876667789999999999998888888887743
No 36
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=36.34 E-value=67 Score=18.28 Aligned_cols=16 Identities=13% Similarity=0.108 Sum_probs=13.4
Q ss_pred HHhhHHHHHHHHHhcC
Q 025686 20 FLAPTITFRRIVRRKS 35 (249)
Q Consensus 20 ~~Splp~i~~i~k~ks 35 (249)
..+.+|++..++|+|.
T Consensus 9 la~~LP~lISWIK~kr 24 (26)
T PF01372_consen 9 LATGLPTLISWIKNKR 24 (26)
T ss_dssp HHTHHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHh
Confidence 4578999999999874
No 37
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=35.97 E-value=1.3e+02 Score=27.93 Aligned_cols=43 Identities=9% Similarity=-0.094 Sum_probs=26.9
Q ss_pred HHhhhHHHhhhccCCCceEEeehhhHHHHHHHHhhheeeEcCC
Q 025686 170 FLCGTSWFVFGLLGRDPFVAVPNGFGCGLGTMQLILYFIYHKK 212 (249)
Q Consensus 170 ~~n~~lW~~YG~l~~d~~v~~~N~iG~~l~~~ql~l~~~y~~k 212 (249)
+--++.|--|....+-...+..|.+|+.++..-.+.+.-|++.
T Consensus 250 ~Gi~la~g~~~~a~ga~~L~~~Nl~~I~la~~~vf~~~g~~p~ 292 (325)
T TIGR00341 250 TGILLVISPLPLAVKSLILTLINVAGLMAGSLAGVYVYGIRAY 292 (325)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3333444444445555667778999999887666655555543
No 38
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=35.43 E-value=5.1e+02 Score=26.60 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhcCCCCc
Q 025686 23 PTITFRRIVRRKSTEQF 39 (249)
Q Consensus 23 plp~i~~i~k~kst~~~ 39 (249)
-+|.+..+.+++..+.-
T Consensus 231 llP~~~~~l~~~r~~~~ 247 (843)
T PF09586_consen 231 LLPTILSLLQSKRSGGS 247 (843)
T ss_pred HHHHHHHHHhCCCccCC
Confidence 57888888888877664
No 39
>TIGR02003 PTS-II-BC-unk1 PTS system, IIBC component. This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter.
Probab=35.16 E-value=2e+02 Score=28.59 Aligned_cols=34 Identities=12% Similarity=0.037 Sum_probs=19.0
Q ss_pred CCceEEeehhhHHHHHHHHhhheeeEcCC---CCCCCCC
Q 025686 184 RDPFVAVPNGFGCGLGTMQLILYFIYHKK---GEPEKPS 219 (249)
Q Consensus 184 ~d~~v~~~N~iG~~l~~~ql~l~~~y~~k---~~~~~~~ 219 (249)
+++..+++ +|.+...+|-++|...=+| +.+.|++
T Consensus 411 ~~~~~~~~--iGi~~~~iYy~vF~f~I~kfnlkTPGRe~ 447 (548)
T TIGR02003 411 MDLINFVI--VSILFAGIMFFIADFLIKKFHLATAGRAG 447 (548)
T ss_pred cCchhHHH--HHHHHHHHHHHHHHHHHHHcCCCCCCCCc
Confidence 34544433 6888777777766444322 4555553
No 40
>PHA03049 IMV membrane protein; Provisional
Probab=30.57 E-value=34 Score=24.22 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=26.5
Q ss_pred hHHHHHHHHhhheeeEcCCCCCCCCCccCCCcccCCCCCccccccCCCCCCcccc
Q 025686 194 FGCGLGTMQLILYFIYHKKGEPEKPSAANGSVEMGQEKPLEGTKMANGNGALVEQ 248 (249)
Q Consensus 194 iG~~l~~~ql~l~~~y~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (249)
++....++-+++|-+|.+|+.....-- .+..-|||.|-+-.+|+.
T Consensus 8 ~iICVaIi~lIvYgiYnkk~~~q~~~p----------~~e~ye~~e~~kT~yvD~ 52 (68)
T PHA03049 8 VIICVVIIGLIVYGIYNKKTTTSQNPP----------SQEKYEKMEDLKTGYVDK 52 (68)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCCC----------ChhhccCchhhhhhHHhh
Confidence 344455677889999987764432211 122346777766666653
No 41
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=27.54 E-value=4.6e+02 Score=23.63 Aligned_cols=96 Identities=11% Similarity=0.030 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHhcccccc----cCCeEeeeehhhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 025686 43 PYVMTLLNCLLSAWYGLPFVS----KNNILVSTINGTGSAIEIIYVLIFLLFAPKKEKAKIFGLFMLVLTVFAAVALVSL 118 (249)
Q Consensus 43 p~~~~~~n~~lW~~YG~~~l~----~~~~~v~~~N~~g~~l~~~~l~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (249)
-.....++...+..|.. +- .|-+..+.|..+|++++..-...+- ..+.++|..............+.+.++..
T Consensus 139 gi~~Ll~stigy~~Y~~--~~~~~~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~~~~k~~~~nil~G~~w~ignl~~~is 215 (269)
T PF06800_consen 139 GILALLISTIGYWIYSV--IPKAFHVSGWSAFLPQAIGMLIGAFIFNLFS-KKPFFEKKSWKNILTGLIWGIGNLFYLIS 215 (269)
T ss_pred HHHHHHHHHHHHHHHHH--HHHhcCCChhHhHHHHHHHHHHHHHHHhhcc-cccccccchHHhhHHHHHHHHHHHHHHHh
Confidence 35677788888888985 22 1334477899999999765444433 22222222222233322222222222211
Q ss_pred hhccCcchhhhhhhhHHHHHHHH
Q 025686 119 LAFHGNARKIFCGFAATIFSIIM 141 (249)
Q Consensus 119 ~~~~~~~~~~~lG~~~~~~ti~~ 141 (249)
...-+....-.++..+.+++.+-
T Consensus 216 ~~~~G~a~af~lSQ~~vvIStlg 238 (269)
T PF06800_consen 216 AQKNGVATAFTLSQLGVVISTLG 238 (269)
T ss_pred HHhccchhhhhHHhHHHHHHHhh
Confidence 12222445556677776666543
No 42
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.37 E-value=1.2e+02 Score=26.21 Aligned_cols=59 Identities=25% Similarity=0.428 Sum_probs=41.8
Q ss_pred hhhhhhhhhhhccCCCCcch----hHHHHHHHHhhhHHHhhhccCCCceEEeehhhHHHHHHHHhhhe
Q 025686 143 ASPLSIMRMVIKTKSVEFMP----FFLSLFVFLCGTSWFVFGLLGRDPFVAVPNGFGCGLGTMQLILY 206 (249)
Q Consensus 143 ~sPl~~i~~viktks~~~~~----~~~~~~~~~n~~lW~~YG~l~~d~~v~~~N~iG~~l~~~ql~l~ 206 (249)
.+=|||++.+.|++.+|.+- +.+.+.=++-+.-| +|-...+|.+ ..+.++.+++|.++|
T Consensus 129 VaILPQL~~lq~tg~~E~~TahYvfaLG~yR~ly~~~W-I~r~~~e~~~----~~iai~agiVQT~ly 191 (212)
T KOG3106|consen 129 VAILPQLFMLQKTGEAETITAHYLFALGLYRALYIANW-IYRYVTEDFW----DPIAIVAGIVQTVLY 191 (212)
T ss_pred HHHhHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHH-HHHHHhhccc----cchHHHHHHHHHHHH
Confidence 34589999999999999984 33445556677778 6777777732 345566777787765
No 43
>PRK15049 L-asparagine permease; Provisional
Probab=27.12 E-value=3.5e+02 Score=26.11 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=10.5
Q ss_pred CCCCccCCCcccCCCC
Q 025686 216 EKPSAANGSVEMGQEK 231 (249)
Q Consensus 216 ~~~~~~~~~~~~~~~~ 231 (249)
.+..+++-++|+|+++
T Consensus 473 ~~~~~~~~~~~~~~~~ 488 (499)
T PRK15049 473 AEIHSTAPVVEEDEEK 488 (499)
T ss_pred ccccCCCCcccccccc
Confidence 3344555788888866
No 44
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=25.42 E-value=5e+02 Score=23.36 Aligned_cols=15 Identities=7% Similarity=-0.020 Sum_probs=10.3
Q ss_pred hHHHHHHHHHhcCCC
Q 025686 23 PTITFRRIVRRKSTE 37 (249)
Q Consensus 23 plp~i~~i~k~kst~ 37 (249)
-.|-+.++.|+.+..
T Consensus 116 ~~Pi~~~~~~~~~i~ 130 (351)
T PF03600_consen 116 MIPIVLSLARKLGIP 130 (351)
T ss_pred hHHHHHHHHHHcCCC
Confidence 347788888876643
No 45
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.16 E-value=4.2e+02 Score=22.38 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=43.8
Q ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhccCCCCcchhHHHHHHHHhhhHHHhhhccCCCceEEeehhhHHHHHHHHhhh
Q 025686 126 RKIFCGFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLGRDPFVAVPNGFGCGLGTMQLIL 205 (249)
Q Consensus 126 ~~~~lG~~~~~~ti~~f~sPl~~i~~viktks~~~~~~~~~~~~~~n~~lW~~YG~l~~d~~v~~~N~iG~~l~~~ql~l 205 (249)
.-..+|.+..+.+.+.-..|..++++....+ -.+.-...+.|.+=++|.-+.-+..++ +.+.++++..-++.
T Consensus 79 l~~TlGnll~i~sf~fLmGP~~ql~~m~~p~------Rl~~T~~~l~~~~~Tly~al~~ks~iL--tllf~ilq~laliw 150 (175)
T KOG2887|consen 79 LLYTLGNLLAIGSFAFLMGPVSQLKHMFSPE------RLPATLSYLATMVLTLYVALWLKSKIL--TLLFCILQVLALIW 150 (175)
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhcChh------HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 3456888888888888899999999987332 233344455555556666555333332 44444444444444
Q ss_pred e
Q 025686 206 Y 206 (249)
Q Consensus 206 ~ 206 (249)
|
T Consensus 151 Y 151 (175)
T KOG2887|consen 151 Y 151 (175)
T ss_pred H
Confidence 3
No 46
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=24.72 E-value=3e+02 Score=26.59 Aligned_cols=139 Identities=12% Similarity=0.234 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHH-H--HHhcCCCCccchhHHHHHHHHHHHHHhcccccccCCe----EeeeehhhHHH
Q 025686 6 FLFGVFGNATALFLFLAPTITFRR-I--VRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNI----LVSTINGTGSA 78 (249)
Q Consensus 6 ~ivg~l~~i~tv~m~~Splp~i~~-i--~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~----~v~~~N~~g~~ 78 (249)
..+...+.-.+..+++.-.|+-.+ + ..-|++|=.+.+|++.+......+-.-+- ++..+.. -.-.-|.++..
T Consensus 263 i~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD-~l~~~~ls~t~~rkifn~i~~~ 341 (466)
T KOG2532|consen 263 IWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSD-RLTFRILSETTVRKIFNTIAFG 341 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHH-HHhhccCchHhHHHHHHhHHHH
Confidence 344445555666677778888766 2 23456778899999999988877766664 3332200 12345888877
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhhhhhccC----cchhhhhhhhHHHHHHHHhhhhhh
Q 025686 79 IEIIYVLIFLLFAPKKEKAKIFGLFMLVLTVFAAVALVSLLAFHG----NARKIFCGFAATIFSIIMYASPLS 147 (249)
Q Consensus 79 l~~~~l~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~lG~~~~~~ti~~f~sPl~ 147 (249)
...+.+..- -|.++..+...+.++.... .+.......+..-+. +-...++|..-.+.++..+.+|+.
T Consensus 342 ~~ai~l~~l-~~~~~~~~~~a~~~l~~~~-~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~ 412 (466)
T KOG2532|consen 342 GPAVFLLVL-AFTSDEHRLLAVILLTIAI-GLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLL 412 (466)
T ss_pred HHHHHHHee-eecCCCcchHHHHHHHHHH-HHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777666553 3334333321222222111 111111111111111 223445777777888888888765
No 47
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=24.32 E-value=3.6e+02 Score=22.75 Aligned_cols=46 Identities=24% Similarity=0.248 Sum_probs=29.8
Q ss_pred HHHHHhhhHHHhhh----ccCCCceEEeehhhHHHHHHHHhhheeeEcCC
Q 025686 167 LFVFLCGTSWFVFG----LLGRDPFVAVPNGFGCGLGTMQLILYFIYHKK 212 (249)
Q Consensus 167 ~~~~~n~~lW~~YG----~l~~d~~v~~~N~iG~~l~~~ql~l~~~y~~k 212 (249)
....+...+|+.-- .+-....+.+|+...++++++-...++++.+|
T Consensus 151 ~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~~~lkkk 200 (206)
T PF06570_consen 151 LISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALRFYLKKK 200 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556774221 12244566789999999999988887666644
No 48
>PRK15487 O-antigen ligase RfaL; Provisional
Probab=22.83 E-value=6.5e+02 Score=23.75 Aligned_cols=43 Identities=12% Similarity=0.141 Sum_probs=25.8
Q ss_pred HHHHHhhHHHHHHHHHhcCC-CCccchhHHHHHHHHHHHHHhcc
Q 025686 17 LFLFLAPTITFRRIVRRKST-EQFSGIPYVMTLLNCLLSAWYGL 59 (249)
Q Consensus 17 v~m~~Splp~i~~i~k~kst-~~~s~~p~~~~~~n~~lW~~YG~ 59 (249)
+.+.+.-++.+++..|+|.. -..-..|+....+--.+|+.|+.
T Consensus 36 ~~~~l~~~~~L~~l~~d~k~~~~~l~~~l~i~~lll~ll~l~S~ 79 (400)
T PRK15487 36 LIIILMTITAIYYLSRDPKHFLSLFKNSLFYSVAVLSLALLYSI 79 (400)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 34445555566655544432 12333566667777788999997
No 49
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=22.22 E-value=7.9e+02 Score=26.10 Aligned_cols=29 Identities=24% Similarity=0.199 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhcc
Q 025686 22 APTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGL 59 (249)
Q Consensus 22 Splp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~ 59 (249)
+-+||.++-.|. .+ .-..+.|++|.+|=.
T Consensus 72 ~~Fpq~r~RfR~-------~L--~YI~~~~l~W~lYfa 100 (1318)
T KOG3618|consen 72 RCFPQTRRRFRY-------AL--FYIGFACLLWSLYFA 100 (1318)
T ss_pred hhCHHHHHHHHH-------HH--HHHHHHHHHHHHHhe
Confidence 346676664442 22 334567899999986
No 50
>KOG1621 consensus 1D-myo-inositol-triphosphate 3-kinase A [Lipid transport and metabolism]
Probab=21.46 E-value=22 Score=33.57 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=25.5
Q ss_pred cCCCCCCCCCccCCCcccCCCCCcccccc
Q 025686 210 HKKGEPEKPSAANGSVEMGQEKPLEGTKM 238 (249)
Q Consensus 210 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (249)
.+|++..+.+.+.+-|++||++|+++|+-
T Consensus 275 arkrp~lRkDmYeKMvavDp~aPTeEE~a 303 (458)
T KOG1621|consen 275 ARKRPKLRKDMYEKMVAVDPDAPTEEERA 303 (458)
T ss_pred hhcCcchhHHHHHHHhccCCCCCCHHHhh
Confidence 46778889999999999999999999873
No 51
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=20.70 E-value=2.3e+02 Score=22.79 Aligned_cols=48 Identities=21% Similarity=0.375 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhccC---------cchhhhhhhhHHHHHHHH
Q 025686 94 KEKAKIFGLFMLVLTVFAAVALVSLLAFHG---------NARKIFCGFAATIFSIIM 141 (249)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~~~lG~~~~~~ti~~ 141 (249)
|.++++..+.....+++..+.+++|-..++ .+.++..|.+|..++=.+
T Consensus 2 r~~~~i~~~~l~~~~~fl~~al~sy~~~D~~~~~~~~~~~~~~N~~G~~Ga~~a~~l 58 (171)
T PF13491_consen 2 RRKREILGIALLLLALFLLLALISYSPSDPSWNSSGSTDAEVHNLMGILGAYLADFL 58 (171)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccccCCCcCCCChHhHHHHHhH
Confidence 445566666666555666556565532221 133456777776655443
No 52
>TIGR02896 spore_III_AF stage III sporulation protein AF. This family represents the stage III sporulation protein AF of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of this protein is poorly conserved, so only the N-terminal region, which includes two predicted transmembrane domains, is included in the seed alignment.
Probab=20.51 E-value=2.2e+02 Score=21.90 Aligned_cols=33 Identities=9% Similarity=0.287 Sum_probs=26.7
Q ss_pred hhccCcchhhhhhhhHHHHHHHHhhhhhhhhhh
Q 025686 119 LAFHGNARKIFCGFAATIFSIIMYASPLSIMRM 151 (249)
Q Consensus 119 ~~~~~~~~~~~lG~~~~~~ti~~f~sPl~~i~~ 151 (249)
..+++...+..+.++++.+-+...++|+..+.+
T Consensus 22 ~llP~~~~kkYvr~v~Gl~Li~~il~Pi~~l~~ 54 (106)
T TIGR02896 22 MLLPNSSLKKYVKFVVGLILMVVILNPIIKLLT 54 (106)
T ss_pred HHCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 346778888899999999999999999876554
Done!