Query 025686
Match_columns 249
No_of_seqs 153 out of 1562
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 15:25:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ym0_B Fibrinotic enzyme compo 37.1 21 0.00073 19.3 1.9 24 207-230 4-27 (27)
2 3dh4_A Sodium/glucose cotransp 22.2 3.9E+02 0.013 24.6 9.2 37 167-206 432-468 (530)
3 4djk_A Probable glutamate/gamm 18.8 1.3E+02 0.0044 27.1 5.0 18 130-147 370-387 (511)
4 3qrx_B Melittin; calcium-bindi 10.9 1.4E+02 0.0046 16.2 1.6 15 21-35 10-24 (26)
5 3l1l_A Arginine/agmatine antip 8.6 4.9E+02 0.017 22.5 5.6 26 131-156 354-379 (445)
6 2aqx_A Predicted: inositol 1,4 6.8 41 0.0014 29.3 -2.6 26 214-239 110-135 (289)
7 3tlw_A GLR4197 protein, GLIC; 6.5 1.1E+03 0.037 19.7 8.7 22 127-148 256-277 (321)
8 2b2h_A AMT-1, ammonium transpo 5.7 4.4E+02 0.015 23.8 3.6 31 153-183 31-61 (399)
9 2a98_A Inositol 1,4,5-trisphos 5.5 48 0.0016 28.4 -2.8 21 219-239 85-105 (259)
10 3dad_A FH1/FH2 domain-containi 5.4 4.2E+02 0.014 23.5 3.2 33 144-176 254-286 (339)
No 1
>1ym0_B Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Probab=37.09 E-value=21 Score=19.27 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=18.2
Q ss_pred eeEcCCCCCCCCCccCCCcccCCC
Q 025686 207 FIYHKKGEPEKPSAANGSVEMGQE 230 (249)
Q Consensus 207 ~~y~~k~~~~~~~~~~~~~~~~~~ 230 (249)
.+|+...-..+|-.+.|+.|+.||
T Consensus 4 vwypggqcgvsqysdagdmelppg 27 (27)
T 1ym0_B 4 VWYPGGQCGVSQYSDAGDMELPPG 27 (27)
T ss_dssp CSCTTSCCSCCSSTTTTCCCCCCC
T ss_pred eeccCCcccceecccccccccCCC
Confidence 467766666777788899998775
No 2
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=22.16 E-value=3.9e+02 Score=24.58 Aligned_cols=37 Identities=0% Similarity=-0.255 Sum_probs=18.2
Q ss_pred HHHHHhhhHHHhhhccCCCceEEeehhhHHHHHHHHhhhe
Q 025686 167 LFVFLCGTSWFVFGLLGRDPFVAVPNGFGCGLGTMQLILY 206 (249)
Q Consensus 167 ~~~~~n~~lW~~YG~l~~d~~v~~~N~iG~~l~~~ql~l~ 206 (249)
+.+++....|..+ ..|....-++.+++.++.+-.+..
T Consensus 432 i~G~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~v~v 468 (530)
T 3dh4_A 432 VASIPFALFLKFM---PLSMPFMDQMLYTLLFTMVVIAFT 468 (530)
T ss_dssp HHHHHHHHHHHTS---SSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---cCCccHHHHHHHHHHHHHHHHHHH
Confidence 3444444444332 223333345677777776655443
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=18.83 E-value=1.3e+02 Score=27.06 Aligned_cols=18 Identities=6% Similarity=-0.027 Sum_probs=8.1
Q ss_pred hhhhHHHHHHHHhhhhhh
Q 025686 130 CGFAATIFSIIMYASPLS 147 (249)
Q Consensus 130 lG~~~~~~ti~~f~sPl~ 147 (249)
+--+++......|..+..
T Consensus 370 l~~~~~~~~~~~y~~~~~ 387 (511)
T 4djk_A 370 ALALTVVIYLCAYFMLFI 387 (511)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444554443
No 4
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=10.92 E-value=1.4e+02 Score=16.17 Aligned_cols=15 Identities=13% Similarity=0.124 Sum_probs=12.4
Q ss_pred HhhHHHHHHHHHhcC
Q 025686 21 LAPTITFRRIVRRKS 35 (249)
Q Consensus 21 ~Splp~i~~i~k~ks 35 (249)
...+|.+..++|+|.
T Consensus 10 a~~LP~liSWiK~kr 24 (26)
T 3qrx_B 10 TTGLPALISWIKRKR 24 (26)
T ss_pred HccchHHHHHHHHHh
Confidence 457899999999885
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=8.63 E-value=4.9e+02 Score=22.47 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHhhhhhhhhhhhhccC
Q 025686 131 GFAATIFSIIMYASPLSIMRMVIKTK 156 (249)
Q Consensus 131 G~~~~~~ti~~f~sPl~~i~~viktk 156 (249)
.-+++......|..+.....+..|++
T Consensus 354 ~~~~~~~~~~~y~~~~~~~~~~r~~~ 379 (445)
T 3l1l_A 354 SSVSVIFTLVPYLYTCAALLLLGHGH 379 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33344444455554444444444443
No 6
>2aqx_A Predicted: inositol 1,4,5-trisphosphate 3-kinase; IP3K, ITPKB, IP3-3K, IP3-3KB, IP3, calmodu binding, transferase; HET: ATP; 2.50A {Mus musculus}
Probab=6.76 E-value=41 Score=29.33 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=18.1
Q ss_pred CCCCCCccCCCcccCCCCCccccccC
Q 025686 214 EPEKPSAANGSVEMGQEKPLEGTKMA 239 (249)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (249)
+..+...+.+-+++||++|+++||-+
T Consensus 110 p~~r~d~y~Kmi~~dp~apt~eek~~ 135 (289)
T 2aqx_A 110 PSLRKDMYQKMVEVDPEAPTEEEKAQ 135 (289)
T ss_dssp CCCBHHHHHHHHHHCTTCSCHHHHHH
T ss_pred chhhhhhhhhhhccCccCCccHHHHH
Confidence 34444555667789999998887743
No 7
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=6.53 E-value=1.1e+03 Score=19.67 Aligned_cols=22 Identities=5% Similarity=0.288 Sum_probs=11.0
Q ss_pred hhhhhhhHHHHHHHHhhhhhhh
Q 025686 127 KIFCGFAATIFSIIMYASPLSI 148 (249)
Q Consensus 127 ~~~lG~~~~~~ti~~f~sPl~~ 148 (249)
...+|..-.++-+++++|=+..
T Consensus 256 vp~i~~~~~~~~~~v~~sll~~ 277 (321)
T 3tlw_A 256 MTYTGAIIFMIYLFYFVAVIEV 277 (321)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4455655555555555554433
No 8
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=5.67 E-value=4.4e+02 Score=23.75 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=22.4
Q ss_pred hccCCCCcchhHHHHHHHHhhhHHHhhhccC
Q 025686 153 IKTKSVEFMPFFLSLFVFLCGTSWFVFGLLG 183 (249)
Q Consensus 153 iktks~~~~~~~~~~~~~~n~~lW~~YG~l~ 183 (249)
.|+||+-++=..-.....+.++.|.++|+-.
T Consensus 31 vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~l 61 (399)
T 2b2h_A 31 VRRKNAVNMIALSFISLIITVLLWIFYGYSV 61 (399)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred ccHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777666666677788888888877654
No 9
>2a98_A Inositol 1,4,5-trisphosphate 3-kinase C; structural genomics, structural genomics consortium, SGC, transferase; HET: I3P; 2.60A {Homo sapiens}
Probab=5.55 E-value=48 Score=28.37 Aligned_cols=21 Identities=10% Similarity=0.071 Sum_probs=15.5
Q ss_pred CccCCCcccCCCCCccccccC
Q 025686 219 SAANGSVEMGQEKPLEGTKMA 239 (249)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ 239 (249)
..+.+-+++||++|+++||.+
T Consensus 85 d~y~Kmv~~dp~apt~eek~~ 105 (259)
T 2a98_A 85 DMYEKMVAVDPGAPTPEEHAQ 105 (259)
T ss_dssp HHHHHHHTTCTTCSCHHHHHH
T ss_pred hhhhhhhccCCCCCchHHHHH
Confidence 344556788999998888754
No 10
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=5.44 E-value=4.2e+02 Score=23.47 Aligned_cols=33 Identities=9% Similarity=0.071 Sum_probs=28.9
Q ss_pred hhhhhhhhhhccCCCCcchhHHHHHHHHhhhHH
Q 025686 144 SPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSW 176 (249)
Q Consensus 144 sPl~~i~~viktks~~~~~~~~~~~~~~n~~lW 176 (249)
-|+..+.+++++|+..+.......++++|..+=
T Consensus 254 ~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~ 286 (339)
T 3dad_A 254 PPWANLVSILEEKNGADPELLVYTVTLINKTLA 286 (339)
T ss_dssp CTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHh
Confidence 478899999999999999999999999998654
Done!