Query 025686
Match_columns 249
No_of_seqs 153 out of 1562
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 15:25:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025686.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025686hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 7.1 1.4E+02 0.01 15.1 2.1 16 75-90 10-25 (30)
2 d1b8ta2 g.39.1.3 (A:36-100) Cy 6.4 1.9E+02 0.014 17.7 2.9 29 211-244 33-61 (65)
3 d1xioa_ f.13.1.1 (A:) Sensory 5.9 4.9E+02 0.036 18.9 9.8 36 146-182 147-182 (226)
4 d1vf5c3 f.23.23.1 (C:250-286) 5.4 2.6E+02 0.019 15.1 4.1 29 7-40 6-34 (37)
5 d1hx6a1 b.121.2.1 (A:15-244) C 5.3 1.5E+02 0.011 21.5 2.1 42 202-246 147-190 (230)
6 d1rl2a1 b.34.5.3 (A:126-195) C 4.0 1.7E+02 0.013 18.0 1.4 21 223-246 16-36 (70)
7 d2axtm1 f.23.35.1 (M:1-36) Pho 3.7 2.5E+02 0.018 15.0 1.7 13 72-84 3-15 (36)
8 d2pila_ d.24.1.1 (A:) Pilin Gc 3.3 5.7E+02 0.042 16.0 4.2 24 5-33 7-30 (158)
9 d2croa_ a.35.1.2 (A:) cro 434 3.2 3.2E+02 0.023 15.6 2.1 36 23-58 29-64 (65)
10 d3dtub2 f.17.2.1 (B:30-129) Ba 3.2 1.8E+02 0.013 18.8 0.9 35 193-227 38-73 (100)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.08 E-value=1.4e+02 Score=15.08 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHhc
Q 025686 75 TGSAIEIIYVLIFLLF 90 (249)
Q Consensus 75 ~g~~l~~~~l~v~~~y 90 (249)
++++++.++.++|++-
T Consensus 10 fac~i~lfffaiffre 25 (30)
T d2axtt1 10 FACIIALFFFAIFFRE 25 (30)
T ss_dssp HHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4455555555555543
No 2
>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=6.38 E-value=1.9e+02 Score=17.72 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=17.0
Q ss_pred CCCCCCCCCccCCCcccCCCCCccccccCCCCCC
Q 025686 211 KKGEPEKPSAANGSVEMGQEKPLEGTKMANGNGA 244 (249)
Q Consensus 211 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (249)
+|+-...+.+ |.|.+|++. ...+++.+++
T Consensus 33 PkG~G~G~ga--g~l~~d~g~---~~g~~~~~~~ 61 (65)
T d1b8ta2 33 PKGKGKGMGA--GTLSTDKGE---SLGIKYEEGQ 61 (65)
T ss_dssp CCCCCCCCCC--CCCCCCCCC---CCCCCCCCCC
T ss_pred CCcccccccc--ceeeecccc---cCCcCCCCcc
Confidence 4444445555 889999866 4444444443
No 3
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=5.92 E-value=4.9e+02 Score=18.90 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=20.2
Q ss_pred hhhhhhhhccCCCCcchhHHHHHHHHhhhHHHhhhcc
Q 025686 146 LSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLL 182 (249)
Q Consensus 146 l~~i~~viktks~~~~~~~~~~~~~~n~~lW~~YG~l 182 (249)
....++..++++.+ ....-.....+...+|..|++.
T Consensus 147 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~v~W~~YPi~ 182 (226)
T d1xioa_ 147 WNPLRAKTRTQSSE-LANLYDKLVTYFTVLWIGYPIV 182 (226)
T ss_dssp HTHHHHHHTTSCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555554432 2333334455667899999876
No 4
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.43 E-value=2.6e+02 Score=15.11 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCcc
Q 025686 7 LFGVFGNATALFLFLAPTITFRRIVRRKSTEQFS 40 (249)
Q Consensus 7 ivg~l~~i~tv~m~~Splp~i~~i~k~kst~~~s 40 (249)
+-|.++..+++ .+.|+.-+.|+|..+.+.
T Consensus 6 v~gl~~F~~~v-----~laQi~lVlKKKQ~EkVQ 34 (37)
T d1vf5c3 6 VKWMIAFICLV-----MLAQLMLILKKKQVEKVQ 34 (37)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHTGGGCTTG
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 45666655554 567888899999988765
No 5
>d1hx6a1 b.121.2.1 (A:15-244) Coat protein p3 {Bacteriophage prd1 [TaxId: 10658]}
Probab=5.27 E-value=1.5e+02 Score=21.48 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=29.2
Q ss_pred HhhheeeEcCCCCCCCCCccCCCc--ccCCCCCccccccCCCCCCcc
Q 025686 202 QLILYFIYHKKGEPEKPSAANGSV--EMGQEKPLEGTKMANGNGALV 246 (249)
Q Consensus 202 ql~l~~~y~~k~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 246 (249)
.+.+|+|-| -.+++++-+|.| ...+++..++-..||.|.||.
T Consensus 147 eltmyywvp---laysetdltgavlanvpqskqrlklefannntafa 190 (230)
T d1hx6a1 147 ELTMYYWVP---LAYSETDLTGAVLANVPQSKQRLKLEFANNNTAFA 190 (230)
T ss_dssp EEEEEEEEE---SSSSSSCCTTCEECSSCCSCCEEEEEECCTTTSEE
T ss_pred ceEEEEEEE---eeecccccchHHHhcCcchhhhheeeeccCCccee
Confidence 567788877 334455556665 455677778888899998874
No 6
>d1rl2a1 b.34.5.3 (A:126-195) C-terminal domain of ribosomal protein L2 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=4.01 E-value=1.7e+02 Score=18.04 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=15.3
Q ss_pred CCcccCCCCCccccccCCCCCCcc
Q 025686 223 GSVEMGQEKPLEGTKMANGNGALV 246 (249)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~ 246 (249)
-.+|+.|++ +.|++-..|.+.
T Consensus 16 ~niE~~pg~---ggk~~RsAGt~a 36 (70)
T d1rl2a1 16 HNIELKPGR---GGQLVRAAGTSA 36 (70)
T ss_dssp ESEESSTTS---CEEESSSSSCCE
T ss_pred EEEEeeccC---CcEEEEccCceE
Confidence 356888887 888877776654
No 7
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.73 E-value=2.5e+02 Score=15.02 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=6.3
Q ss_pred ehhhHHHHHHHHH
Q 025686 72 INGTGSAIEIIYV 84 (249)
Q Consensus 72 ~N~~g~~l~~~~l 84 (249)
+|.+|++....++
T Consensus 3 vN~Lg~iAt~LFi 15 (36)
T d2axtm1 3 VNQLGLIATALFV 15 (36)
T ss_dssp CCTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 3555555544443
No 8
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=3.31 E-value=5.7e+02 Score=16.05 Aligned_cols=24 Identities=13% Similarity=0.283 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 025686 5 HFLFGVFGNATALFLFLAPTITFRRIVRR 33 (249)
Q Consensus 5 ~~ivg~l~~i~tv~m~~Splp~i~~i~k~ 33 (249)
..++.++|.++++ .+|.+.+.+++
T Consensus 7 lVViaIIgILaai-----a~P~~~~~~~~ 30 (158)
T d2pila_ 7 MIVIAIVGILAAV-----ALPAYQDYTAR 30 (158)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 3445555555554 35666665554
No 9
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=3.21 E-value=3.2e+02 Score=15.55 Aligned_cols=36 Identities=14% Similarity=-0.025 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhc
Q 025686 23 PTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYG 58 (249)
Q Consensus 23 plp~i~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG 58 (249)
.-.++.++.+.++...-...-+.-.+-...-|+++|
T Consensus 29 s~~ti~~~E~g~~~~~~~l~~ia~~l~v~~~~Ll~G 64 (65)
T d2croa_ 29 KQQSIQLIEAGVTKRPRFLFEIAMALNCDPVWLQYG 64 (65)
T ss_dssp CHHHHHHHHTTCCSSCTTHHHHHHHTTSCHHHHHHC
T ss_pred CHhHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHhhC
Confidence 345667776666543322222233333356677776
No 10
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.18 E-value=1.8e+02 Score=18.85 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhheeeEc-CCCCCCCCCccCCCccc
Q 025686 193 GFGCGLGTMQLILYFIYH-KKGEPEKPSAANGSVEM 227 (249)
Q Consensus 193 ~iG~~l~~~ql~l~~~y~-~k~~~~~~~~~~~~~~~ 227 (249)
.++.+....-....++|+ +|++...+...|-.+|+
T Consensus 38 ~I~~~V~~~l~~~~~~~r~~~~~~~~~~~~n~~LEi 73 (100)
T d3dtub2 38 AITIFVTLLILYAVWRFHEKRNKVPARFTHNSPLEI 73 (100)
T ss_dssp HHHHHHHHHHHHHHHHHBTTTCCSCCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhccCCCCCccccCcchHHH
Done!