BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025687
(249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QDL|A Chain A, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 422
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 117/218 (53%), Gaps = 18/218 (8%)
Query: 22 LVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLGR 81
L+ SSPE+L RV+ + P+AGT RG +EDL E EL+N EK AEH+MLVDL R
Sbjct: 220 LIGSSPELLFRVQDNIVETYPIAGTRPRGADQEEDLKLELELMNSEKDKAEHLMLVDLAR 279
Query: 82 NDXXXXXXXXXXXXEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGAP 141
ND +LM +E YSHV HI S V G L + + L A P GTVSGAP
Sbjct: 280 NDLGKVCVPGTVKVPELMYVEKYSHVQHIVSKVIGTLKKKYNALNVLSATFPAGTVSGAP 339
Query: 142 KVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVDK 201
K AM +I+ LE +RGPY+G G IS G+ + A+A+RT
Sbjct: 340 KPMAMNIIETLEEYKRGPYAGAVGFISADGNAEFAIAIRTAFL----------------- 382
Query: 202 RREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAI 239
+ + + AGAGIV DS+P E E E+K + AI
Sbjct: 383 -NKELLRIHAGAGIVYDSNPESEYFETEHKLKALKTAI 419
>pdb|4GRH|A Chain A, Crystal Structure Of Pabb Of Stenotrophomonas Maltophilia
Length = 457
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 119/223 (53%), Gaps = 19/223 (8%)
Query: 17 ARGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIML 76
A G +V+SSPE L V RP+AGT R + +D +EL+ K+ AEH+ML
Sbjct: 250 AHGRHVVSSSPERLVSVHAGHAQTRPIAGTRPRFEG-DDDAARIQELVGHPKERAEHVML 308
Query: 77 VDLGRNDXXXXXXXXXXXXEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGT 136
+DL RND ++LM +E Y+HV HI S V+G L +T + + A P GT
Sbjct: 309 IDLERNDLGRICLPGTVVVDELMTVESYAHVHHIVSNVSGHLRPEVTPGEVIAATFPGGT 368
Query: 137 VSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSY 196
++G PKV+ M++I ELE RG Y+G FG ++ GD+D+ + +RT
Sbjct: 369 ITGCPKVRCMQIISELEQVPRGAYTGAFGWLNRDGDLDLNILIRT--------------- 413
Query: 197 KDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAI 239
+VD + GAGIV DSDP+ E E KA G+ RA+
Sbjct: 414 AEVDGHE---VSFRTGAGIVVDSDPDKELDETRAKARGLLRAL 453
>pdb|1I1Q|A Chain A, Structure Of The Cooperative Allosteric Anthranilate
Synthase From Salmonella Typhimurium
Length = 520
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 118/238 (49%), Gaps = 26/238 (10%)
Query: 13 FSNQARGCILVASSPEILTR--VKKRKITNRPLAGTVRRGK----TPKEDL--VFEKELL 64
F Q L +SPE + R+I P+AGT RG+ T DL E ++
Sbjct: 294 FFMQDNDFTLFGASPESSLKYDAASRQIEIYPIAGTRPRGRRADGTLDRDLDSRIELDMR 353
Query: 65 NDEKQCAEHIMLVDLGRNDXXXXXXXXXXXXEKLMNIEHYSHVMHISSTVTGELLDHLTS 124
D K+ +EH+MLVDL RND L ++ YS+VMH+ S V GEL L +
Sbjct: 354 TDHKELSEHLMLVDLARNDLARICTPGSRYVADLTKVDRYSYVMHLVSRVVGELRHDLDA 413
Query: 125 WDALRAALPVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVF 184
A RA + +GT+SGAPKV+AM+LI + E RRG Y G G + GD+D + +R+ +
Sbjct: 414 LHAYRACMNMGTLSGAPKVRAMQLIADAEGQRRGSYGGAVGYFTAHGDLDTCIVIRSALV 473
Query: 185 PTATRYDTMYSYKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAIDLA 242
IA +QAGAGIV DS P E E NKA + RAI A
Sbjct: 474 ------------------ENGIATVQAGAGIVLDSVPQSEADETRNKARAVLRAIATA 513
>pdb|1K0E|A Chain A, The Crystal Structure Of Aminodeoxychorismate Synthase
From Formate Grown Crystals
pdb|1K0E|B Chain B, The Crystal Structure Of Aminodeoxychorismate Synthase
From Formate Grown Crystals
pdb|1K0G|A Chain A, The Crystal Structure Of Aminodeoxychorismate Synthase
From Phosphate Grown Crystals
pdb|1K0G|B Chain B, The Crystal Structure Of Aminodeoxychorismate Synthase
From Phosphate Grown Crystals
Length = 453
Score = 130 bits (326), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 117/223 (52%), Gaps = 19/223 (8%)
Query: 18 RGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLV 77
+G IL + SPE +I RP+ GT+ R P+ED +L N K AE++M+V
Sbjct: 249 QGAIL-SLSPERFILCDNSEIQTRPIKGTLPRLPDPQEDSKQAVKLANSAKDRAENLMIV 307
Query: 78 DLGRNDXXXXXXXXXXXXEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTV 137
DL RND +L +E + V H+ ST+T +L + L + D LRAA P G++
Sbjct: 308 DLMRNDIGRVAVAGSVKVPELFVVEPFPAVHHLVSTITAQLPEQLHASDLLRAAFPGGSI 367
Query: 138 SGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYK 197
+GAPKV+AME+IDELE RR + G G +SF G+MD ++ +RT+ TA S
Sbjct: 368 TGAPKVRAMEIIDELEPQRRNAWCGSIGYLSFCGNMDTSITIRTL---TAINGQIFCS-- 422
Query: 198 DVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAID 240
AG GIVADS E +E +K I + ++
Sbjct: 423 -------------AGGGIVADSQEEAEYQETFDKVNRILKQLE 452
>pdb|1I7Q|A Chain A, Anthranilate Synthase From S. Marcescens
pdb|1I7Q|C Chain C, Anthranilate Synthase From S. Marcescens
pdb|1I7S|A Chain A, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
pdb|1I7S|C Chain C, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
Length = 519
Score = 120 bits (301), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 108/229 (47%), Gaps = 26/229 (11%)
Query: 22 LVASSPEILTR--VKKRKITNRPLAGTVRRGKTPKEDL------VFEKELLNDEKQCAEH 73
L +SPE + R+I P+AGT RG+ L E E+ D K+ AEH
Sbjct: 302 LFGASPESALKYDAGNRQIEIYPIAGTRPRGRRADGSLDLDLDSRIELEMRTDHKELAEH 361
Query: 74 IMLVDLGRNDXXXXXXXXXXXXEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALP 133
+MLVDL RND L ++ YS VMH+ S V G L L A +A +
Sbjct: 362 LMLVDLARNDLARICQAGSRYVADLTKVDRYSFVMHLVSRVVGTLRADLDVLHAYQACMN 421
Query: 134 VGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTM 193
+GT+SGAPKV+AM+LI L TRRG Y G G + ++D + +R+ R
Sbjct: 422 MGTLSGAPKVRAMQLIAALRSTRRGSYGGRVGYFTAVRNLDTCIVIRSAYVEDGHRT--- 478
Query: 194 YSYKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAIDLA 242
+QAGAG+V DS P E E NKA + RAI A
Sbjct: 479 ---------------VQAGAGVVQDSIPEREADETRNKARAVLRAIATA 512
>pdb|2FN0|A Chain A, Crystal Structure Of Yersinia Enterocolitica Salicylate
Synthase (Irp9)
pdb|2FN0|B Chain B, Crystal Structure Of Yersinia Enterocolitica Salicylate
Synthase (Irp9)
pdb|2FN1|A Chain A, Crystal Structures Of Yersinia Enterocolitica Salicylate
Synthase (Irp9) In Complex With The Reaction Products
Salicylate And Pyruvate
pdb|2FN1|B Chain B, Crystal Structures Of Yersinia Enterocolitica Salicylate
Synthase (Irp9) In Complex With The Reaction Products
Salicylate And Pyruvate
Length = 437
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 98/211 (46%), Gaps = 19/211 (9%)
Query: 26 SPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLGRNDXX 85
SPE++ V K+ PLAGT R P+ + E ELL+D K+ EHI+ V +
Sbjct: 241 SPELVMSVTGNKVVTEPLAGTRDRMGNPEHNKAKEAELLHDSKEVLEHILSVKEAIAELE 300
Query: 86 XXXXXXXXXXEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGAPKVKA 145
E LM++ V H+ S V+G+L ++ +WDA P T SG PK A
Sbjct: 301 AVCLPGSVVVEDLMSVRQRGSVQHLGSGVSGQLAENKDAWDAFTVLFPSITASGIPKNAA 360
Query: 146 MELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVDKRREW 205
+ I ++E T R YSG + T D AL LR++ D +R W
Sbjct: 361 LNAIMQIEKTPRELYSGAILLLDDT-RFDAALVLRSVF---------------QDSQRCW 404
Query: 206 IAHLQAGAGIVADSDPNDEQKECENKAAGIA 236
I QAGAGI+A S P E E K A IA
Sbjct: 405 I---QAGAGIIAQSTPERELTETREKLASIA 432
>pdb|3H9M|A Chain A, Crystal Structure Of Para-Aminobenzoate Synthetase,
Component I From Cytophaga Hutchinsonii
Length = 436
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 89/168 (52%)
Query: 22 LVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLGR 81
++++SPE + I ++P+ GT +RGK+ ED +++L EK+ +E+ +VDL R
Sbjct: 224 ILSASPERFIKKTGDTIISQPIKGTSKRGKSKAEDEXLKQQLGTSEKEQSENTXIVDLVR 283
Query: 82 NDXXXXXXXXXXXXEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGAP 141
ND +L + + +V + STV + +S D ++ A P G+ +GAP
Sbjct: 284 NDLSRTAVAGSVCVPELSGLYTFPNVHQLISTVQSTIDPACSSIDVIQQAFPXGSXTGAP 343
Query: 142 KVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATR 189
KV + ID +E RGP+SG G + D + +R+I + +AT+
Sbjct: 344 KVNVXKFIDRIESXARGPFSGTVGYXDPHDNFDFNVLIRSIFYNSATQ 391
>pdb|2G5F|A Chain A, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|B Chain B, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|C Chain C, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|D Chain D, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|3RV6|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Phenyl R-Group
pdb|3RV6|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Phenyl R-Group
pdb|3RV7|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV9|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
Length = 450
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 82/205 (40%), Gaps = 19/205 (9%)
Query: 13 FSNQARGCILVASSPEILTRVKKRKIT-NRPLAGTVRRGKTPKEDLVFEKELLNDEKQCA 71
F Q G + SPE++T V+ + PLAGT G+ P D + +L ++ K+
Sbjct: 237 FLLQLGGIRALGYSPELVTAVRADGVVITEPLAGTRALGRGPAIDRLARDDLESNSKEIV 296
Query: 72 EHIMLVDLGRNDXXXXXXXXXXXXEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAA 131
EH + V + M + V H+ ST+ L AL A
Sbjct: 297 EHAISVRSSLEEITDIAEPGSAAVIDFMTVRERGSVQHLGSTIRARLDPSSDRMAALEAL 356
Query: 132 LPVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYD 191
P T SG PK +E I L+ RG YSG +S G +D AL LR
Sbjct: 357 FPAVTASGIPKAAGVEAIFRLDECPRGLYSGAVVMLSADGGLDAALTLR----------- 405
Query: 192 TMYSYKDVDKRREWIAHLQAGAGIV 216
Y R W L+AGAGI+
Sbjct: 406 AAYQVGG----RTW---LRAGAGII 423
>pdb|3LOG|A Chain A, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|B Chain B, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|C Chain C, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|D Chain D, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3VEH|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
Length = 451
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 82/205 (40%), Gaps = 19/205 (9%)
Query: 13 FSNQARGCILVASSPEILTRVKKRKIT-NRPLAGTVRRGKTPKEDLVFEKELLNDEKQCA 71
F Q G + SPE++T V+ + PLAGT G+ P D + +L ++ K+
Sbjct: 239 FLLQLGGIRALGYSPELVTAVRADGVVITEPLAGTRALGRGPAIDRLARDDLESNSKEIV 298
Query: 72 EHIMLVDLGRNDXXXXXXXXXXXXEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAA 131
EH + V + M + V H+ ST+ L AL A
Sbjct: 299 EHAISVRSSLEEITDIAEPGSAAVIDFMTVRERGSVQHLGSTIRARLDPSSDRMAALEAL 358
Query: 132 LPVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYD 191
P T SG PK +E I L+ RG YSG +S G +D AL LR
Sbjct: 359 FPAVTASGIPKAAGVEAIFRLDECPRGLYSGAVVMLSADGGLDAALTLR----------- 407
Query: 192 TMYSYKDVDKRREWIAHLQAGAGIV 216
Y R W L+AGAGI+
Sbjct: 408 AAYQVGG----RTW---LRAGAGII 425
>pdb|3RV8|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3ST6|A Chain A, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|B Chain B, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|C Chain C, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|D Chain D, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
Length = 450
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 82/205 (40%), Gaps = 19/205 (9%)
Query: 13 FSNQARGCILVASSPEILTRVKKRKIT-NRPLAGTVRRGKTPKEDLVFEKELLNDEKQCA 71
F Q G + SPE++T V+ + PLAGT G+ P D + +L ++ K+
Sbjct: 237 FLLQLGGIRALGYSPELVTAVRADGVVITEPLAGTRALGRGPAIDRLARDDLESNSKEIV 296
Query: 72 EHIMLVDLGRNDXXXXXXXXXXXXEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAA 131
EH + V + M + V H+ ST+ L AL A
Sbjct: 297 EHAISVRSSLEEITDIAEPGSAAVIDFMTVRERGSVQHLGSTIRARLDPSSDRMAALEAL 356
Query: 132 LPVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYD 191
P T SG PK +E I L+ RG YSG +S G +D AL LR
Sbjct: 357 FPAVTASGIPKAAGVEAIFRLDECPRGLYSGAVVMLSADGGLDAALTLR----------- 405
Query: 192 TMYSYKDVDKRREWIAHLQAGAGIV 216
Y R W L+AGAGI+
Sbjct: 406 AAYQVGG----RTW---LRAGAGII 423
>pdb|2I6Y|A Chain A, Structure And Mechanism Of Mycobacterium Tuberculosis
Salicylate Synthase, Mbti
Length = 470
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 82/205 (40%), Gaps = 19/205 (9%)
Query: 13 FSNQARGCILVASSPEILTRVKKRKIT-NRPLAGTVRRGKTPKEDLVFEKELLNDEKQCA 71
F Q G + SPE++T V+ + PLAGT G+ P D + +L ++ K+
Sbjct: 257 FLLQLGGIRALGYSPELVTAVRADGVVITEPLAGTRALGRGPAIDRLARDDLESNSKEIV 316
Query: 72 EHIMLVDLGRNDXXXXXXXXXXXXEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAA 131
EH + V + M + V H+ ST+ L AL A
Sbjct: 317 EHAISVRSSLEEITDIAEPGSAAVIDFMTVRERGSVQHLGSTIRARLDPSSDRMAALEAL 376
Query: 132 LPVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYD 191
P T SG PK +E I L+ RG YSG +S G +D AL LR
Sbjct: 377 FPAVTASGIPKAAGVEAIFRLDECPRGLYSGAVVMLSADGGLDAALTLR----------- 425
Query: 192 TMYSYKDVDKRREWIAHLQAGAGIV 216
Y R W L+AGAGI+
Sbjct: 426 AAYQVGG----RTW---LRAGAGII 443
>pdb|3GSE|A Chain A, Crystal Structure Of Menaquinone-specific Isochorismate
Synthase From Yersinia Pestis Co92
Length = 458
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 96/215 (44%), Gaps = 25/215 (11%)
Query: 22 LVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLGR 81
+ SSPE L ++ + LAGTV + + V L++DEK E++++VD
Sbjct: 255 FLGSSPERLYLRQQLHLETEALAGTVSNLDSDPQAAVLADWLMHDEKNQRENLLVVD--- 311
Query: 82 NDXXXXXXXXXXXXEKLM-NIEHYSHVMHISSTVTGELLDHLTSWDALRAALPVGTVSGA 140
D + + I V H+ + +L + D L+ P V+G
Sbjct: 312 -DICQRLQGGVTAVDVMPPEIIRLRKVQHLRRRICAQL-SRASDTDCLQRLQPTAAVAGL 369
Query: 141 PKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVD 200
P+ A + I + E+ RG Y+G G +S + ++ALR+ VD
Sbjct: 370 PREAARQFIAKHELFSRGWYAGSAGYLSLK-RTEFSVALRS---------------ARVD 413
Query: 201 KRREWIAHLQAGAGIVADSDPNDEQKECENKAAGI 235
++ HL AGAGIVA SD E +E +NK+AG+
Sbjct: 414 GQQ---IHLYAGAGIVAGSDAEQEWQEIDNKSAGL 445
>pdb|3OS6|A Chain A, Crystal Structure Of Putative
2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
Dhbc From Bacillus Anthracis.
pdb|3OS6|B Chain B, Crystal Structure Of Putative
2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
Dhbc From Bacillus Anthracis.
pdb|3OS6|C Chain C, Crystal Structure Of Putative
2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
Dhbc From Bacillus Anthracis.
pdb|3OS6|D Chain D, Crystal Structure Of Putative
2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
Dhbc From Bacillus Anthracis
Length = 399
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 100/229 (43%), Gaps = 21/229 (9%)
Query: 22 LVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDEKQCAEHIMLVDLGR 81
L+ +SPE+L ++ + PLAG+ R P ED +ELL+ K EH ++V+
Sbjct: 191 LIGASPELLVSRHGXQVISNPLAGSRPRSDDPVEDKRRAEELLSSPKDLHEHAVVVEAVA 250
Query: 82 NDXXXXXXXXXXXXEKLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAAL-PVGTVSGA 140
+ ++ H H+S+ V GEL + TS L AL P V G
Sbjct: 251 AALRPYCHTLYVPEKP--SVIHSEAXWHLSTEVKGELKNPNTSSLELAIALHPTPAVCGT 308
Query: 141 PKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVD 200
P +A E I ++E R ++G G GD + + +R + +T+ Y
Sbjct: 309 PXEEAREAIQKIEPFDREFFTGXLGWSDLNGDGEWIVTIRC----AEVQENTLRLY---- 360
Query: 201 KRREWIAHLQAGAGIVADSDPNDEQKECENKAAGIARAIDLAESSFVDK 249
AGAG+VA+S P DE E K +A+ L +SS +K
Sbjct: 361 ----------AGAGVVAESKPEDELAETSAKFQTXLKALGLNDSSLNEK 399
>pdb|2EUA|A Chain A, Structure And Mechanism Of Menf, The Menaquinone-Specific
Isochorismate Synthase From Escherichia Coli
pdb|2EUA|B Chain B, Structure And Mechanism Of Menf, The Menaquinone-Specific
Isochorismate Synthase From Escherichia Coli
pdb|3BZM|A Chain A, Crystal Structure Of Open Form Of Menaquinone-Specific
Isochorismate Synthase, Menf
pdb|3BZN|A Chain A, Crystal Structure Of Open Form Of Menaquinone-Specific
Isochorismate Synthase, Menf
Length = 431
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 88/228 (38%), Gaps = 24/228 (10%)
Query: 8 CLCIYFSNQARGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKELLNDE 67
C Y + L SSPE L R + + + LAGTV K+ + L+ D+
Sbjct: 221 CYHFYMAFDGENAFL-GSSPERLWRRRDKALRTEALAGTVANNPDDKQAQQLGEWLMADD 279
Query: 68 KQCAEHIMLVDLGRNDXXXXXXXXXXXXEKLMNIEHYSHVMHISSTVTGELLDHLTSWDA 127
K E++++V+ +++ + H+ T + D +
Sbjct: 280 KNQRENMLVVEDICQRLQADTQTLDVLPPQVLRLRKVQHLRRCIWTSLNKADDVI----C 335
Query: 128 LRAALPVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALRTIVFPTA 187
L P V+G P+ A + I E R Y+G G +S + ++LR+
Sbjct: 336 LHQLQPTAAVAGLPRDLARQFIARHEPFTREWYAGSAGYLSLQQS-EFCVSLRSAKISGN 394
Query: 188 TRYDTMYSYKDVDKRREWIAHLQAGAGIVADSDPNDEQKECENKAAGI 235
+ L AGAGIV SDP E +E +NKAAG+
Sbjct: 395 ------------------VVRLYAGAGIVRGSDPEQEWQEIDNKAAGL 424
>pdb|3HWO|A Chain A, Crystal Structure Of Escherichia Coli
Enterobactin-Specific Isochorismate Synthase Entc In
Complex With Isochorismate
pdb|3HWO|B Chain B, Crystal Structure Of Escherichia Coli
Enterobactin-Specific Isochorismate Synthase Entc In
Complex With Isochorismate
Length = 394
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 87/227 (38%), Gaps = 52/227 (22%)
Query: 17 ARGCILVASSPEILTRVKKRKITNRPLAGTVRRGKTPKEDLVFEKE----LLNDEKQCAE 72
A G +L+ +SPE+L R + ++ PLAG+ RR + D V ++E LL EK E
Sbjct: 189 ADGGVLLGASPELLLRKDGERFSSIPLAGSARR----QPDEVLDREAGNRLLASEKDRHE 244
Query: 73 HIMLVDLGRNDXXXXXXXXXXXXEKLMNIEHYSHVMHISSTVTGELLDHL---------T 123
H ++ E L HV +T L HL +
Sbjct: 245 HELVTQ--------------AMKEVLRERSSELHVPSSPQLITTPTLWHLATPFEGKANS 290
Query: 124 SWDALRAAL---PVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFTGDMDIALALR 180
+AL A P +SG P A ++I ELE R + G G G+ + + +R
Sbjct: 291 QENALTLACLLHPTPALSGFPHQAATQVIAELEPFDRELFGGIVGWCDSEGNGEWVVTIR 350
Query: 181 TIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAGIVADSDPNDEQKE 227
K RE L AGAGIV S P E +E
Sbjct: 351 CA------------------KLRENQVRLFAGAGIVPASSPLGEWRE 379
>pdb|3S88|H Chain H, Crystal Structure Of Sudan Ebolavirus Glycoprotein (Strain
Gulu) Bound To 16f6
Length = 220
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 161 SGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAG 214
SGG G ++ G + ++ A F YD + ++ +KR EW+A++ +G G
Sbjct: 7 SGG-GLVTPGGSLKLSCAASGFAF---NYYDMFWVRQNTEKRLEWVAYINSGGG 56
>pdb|3VE0|A Chain A, Crystal Structure Of Sudan Ebolavirus Glycoprotein (Strain
Boniface) Bound To 16f6
Length = 220
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 161 SGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAG 214
SGG G ++ G + ++ A F YD + ++ +KR EW+A++ +G G
Sbjct: 7 SGG-GLVTPGGSLKLSCAASGFAF---NYYDMFWVRQNTEKRLEWVAYINSGGG 56
>pdb|1F4W|H Chain H, Crystal Structure Of An Anti-Carbohydrate Antibody
Directed Against Vibrio Cholerae O1 In Complex With
Antigen
pdb|1F4X|H Chain H, Crystal Structure Of An Anti-Carbohydrate Antibody
Directed Against Vibrio Cholerae O1 In Complex With
Antigen
pdb|1F4Y|H Chain H, Crystal Structure Of An Anti-Carbohydrate Antibody
Directed Against Vibrio Cholerae O1 In Complex With
Antigen
Length = 216
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 161 SGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAGIVADSD 220
SGG G ++ G + ++ A VF T YD + + +KR EW+A + +G G + D
Sbjct: 7 SGG-GLVTPGGSLRLSCAASGYVFST---YDMSWVRQTPEKRLEWVAFISSGGGRTSYPD 62
>pdb|2ZUQ|C Chain C, Crystal Structure Of Dsbb-Fab Complex
pdb|2ZUQ|F Chain F, Crystal Structure Of Dsbb-Fab Complex
pdb|2LTQ|C Chain C, High Resolution Structure Of Dsbb C41s By Joint
Calculation With Solid-state Nmr And X-ray Data
pdb|2LTQ|F Chain F, High Resolution Structure Of Dsbb C41s By Joint
Calculation With Solid-state Nmr And X-ray Data
Length = 221
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 161 SGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAG 214
SGG G + G + ++ A F + YD + + +KR EW+A++ +G G
Sbjct: 7 SGG-GLVKPGGSLKLSCAASGFAF---SSYDMSWVRQTPEKRLEWVAYISSGGG 56
>pdb|3R74|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
pdb|3R74|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
Length = 645
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 92/238 (38%), Gaps = 46/238 (19%)
Query: 22 LVASSPEILTRVKKRKITNRPLAGTVRRGKT-PKEDLVFEKELLNDEKQCAEHIMLVD-- 78
V ++PE + + T P++GT R ++ P D + L D K+ E M++D
Sbjct: 197 FVGATPERHLTLHEGCATMNPISGTYRYPQSGPTIDGI--NAFLGDRKESDELYMVLDEE 254
Query: 79 ---LGRNDXXXXXXXXXXXXE--KLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALP 133
+ R E +L + E++ V H + V D LR +
Sbjct: 255 LKMMARICPAGGQVTGPHLREMARLAHTEYFI-VGHTEADVR----------DLLRETMF 303
Query: 134 VGTVSGAPKVKAMELIDELEVTRRGPYSG--GFGGISFTGD--MDIALALRTIVFPTATR 189
TV+G+P A +I E RG YSG G G +D A+ +RT
Sbjct: 304 APTVTGSPIESATRVIARHERAGRGYYSGIAALIGRDARGGRTLDSAILIRT-------- 355
Query: 190 YDTMYSYKDVDKRREWIAHLQAGAG--IVADSDPNDEQKECENKAAGIARAIDLAESS 245
++D+ H++ G G +V SD E E K A ++ A D E+
Sbjct: 356 -------AEIDR----AGHVRIGVGSTLVRHSDAVSEVMETHAKVAALSNAFDPPEAG 402
>pdb|3R75|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate, Glutamine And
Contaminating Zn2+
pdb|3R75|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate, Glutamine And
Contaminating Zn2+
pdb|3R76|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate And Glutamine
pdb|3R76|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate And Glutamine
Length = 645
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 92/238 (38%), Gaps = 46/238 (19%)
Query: 22 LVASSPEILTRVKKRKITNRPLAGTVRRGKT-PKEDLVFEKELLNDEKQCAEHIMLVD-- 78
V ++PE + + T P++GT R ++ P D + L D K+ E M++D
Sbjct: 197 FVGATPERHLTLHEGCATMNPISGTYRYPQSGPTIDGI--NAFLGDRKESDELYMVLDEE 254
Query: 79 ---LGRNDXXXXXXXXXXXXE--KLMNIEHYSHVMHISSTVTGELLDHLTSWDALRAALP 133
+ R E +L + E++ V H + V D LR +
Sbjct: 255 LKMMARICPAGGQVTGPHLREMARLAHTEYFI-VGHTEADVR----------DLLRETMF 303
Query: 134 VGTVSGAPKVKAMELIDELEVTRRGPYSG--GFGGISFTGD--MDIALALRTIVFPTATR 189
TV+G+P A +I E RG YSG G G +D A+ +RT
Sbjct: 304 APTVTGSPIESATRVIARHERAGRGYYSGIAALIGRDARGGRTLDSAILIRT-------- 355
Query: 190 YDTMYSYKDVDKRREWIAHLQAGAG--IVADSDPNDEQKECENKAAGIARAIDLAESS 245
++D+ H++ G G +V SD E E K A ++ A D E+
Sbjct: 356 -------AEIDR----AGHVRIGVGSTLVRHSDAVSEVMETHAKVAALSNAFDPPEAG 402
>pdb|2QHR|H Chain H, Crystal Structure Of The 13f6-1-2 Fab Fragment Bound To
Its Ebola Virus Glycoprotein Peptide Epitope
Length = 222
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 161 SGGFGGISFTGDMDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAGIVADSD 220
SGG G + G + ++ A F + YD + + +KR EW+A++ G G D
Sbjct: 7 SGG-GLVKPGGSLKLSCAASGFAF---SSYDMSWVRQTPEKRLEWVAYISRGGGYTYYPD 62
>pdb|2KH2|B Chain B, Solution Structure Of A Scfv-Il-1b Complex
Length = 254
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 188 TRYDTMYSYKDVDKRREWIAHLQAGAG 214
+RYD + + KR EW+A++ +G G
Sbjct: 159 SRYDMSWVRQAPGKRLEWVAYISSGGG 185
>pdb|4AWE|A Chain A, The Crystal Structure Of Chrysonilia Sitophila
Endo-Beta-D- 1,4-Mannanase
Length = 387
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 171 GDMDIALALRTIVFPTATRYDTMYSYKDVDKRREWIAHLQAGAGIVAD 218
GD D L LR + F T Y +S K ++ +WI H A +G A+
Sbjct: 249 GDFDRELGLRNVDFGTMHLYPDWWS-KSIEWSNQWI-HDHAASGRAAN 294
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,955,304
Number of Sequences: 62578
Number of extensions: 269667
Number of successful extensions: 609
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 566
Number of HSP's gapped (non-prelim): 32
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)